3L56A

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
202
structure length
194
Chain Sequence
NGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biological and structural characterization of a host-adapting amino acid in influenza virus.
pubmed doi rcsb
molecule tags Viral protein
source organism Influenza a virus
molecule keywords Polymerase PB2
total genus 51
structure length 194
sequence length 202
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3l56A02
3R2VA 2JDQD 2GMOA 3CW4A 4UAFE 2VY6A 4UAEF 3KC6A 3KHWA 3L56A 4UADE
chains in the Genus database with same CATH superfamily
5CY0A 5EY4A 5F2RA 5AQQA 3FZHA 3GKUA 1T0ZA 3ATVA 1SN1A 4FSVA 2A7TA 2LN8A 4IO8A 1T7BA 5F1XA 2LJ7A 3R2VA 3FZKA 5AQLA 3KP1A 3KOXA 4AEIA 2YIPA 2M8BB 1SN4A 2YEOA 1OMYA 2KYQA 1POIA 2E0HA 2YC1C 1MR4A 4V1DC 1QQOA 3D2EB 1YUWA 5AQTA 1NPIA 5BN9A 1I2UA 5AQUA 1ZU3A 1BCGA 1VNBA 1P00A 1T1TA 3LDQA 4H5RA 3QMLA 5AQZA 1ZVEA 3IUCA 3M3ZA 4H5NA 4UJ0A 5AQYA 2N66A 2SN3A 1LQHA 5BN8A 2E3FA 1NGAA 1OZZA 1GPTA 1NRAA 1NGEA 1QQMA 1N4NA 1I6FA 2GL1A 5AQMA 4AB0A 1DQ7A 5AQVA 5AQKA 3PSMA 3KOYA 5KK4A 1NGJA 2K35A 2VY6A 5EVZA 5AQSA 3KHWA 2QWNA 3FZMA 2KSKA 1NGDA 2E3GA 1ZVGA 2KBKA 1CHZA 3FZLA 2G2KA 1PX9A 3KOZA 5AQFA 3LDLA 5AQWA 1NRBA 3JXUA 4CQKA 2D56A 1P0AA 2N2QA 1JXCA 2GMOA 5AQNA 3KVGA 1UGLA 1GPSA 1BA0A 3KOWA 3LDPA 3QFPA 5AR0A 1QQNA 3KC6A 5AQOA 1BA1A 1BMRA 3ATUA 2N69A 1NGFA 1ATRA 2LR3A 3KP0A 4HE7A 2KGQA 5AQIA 1K8BA 2LI7A 5AQJA 4H5VA 2QWMA 1TI5A 3C7NA 1WMTA 2JDQD 4H5WA 1DKGD 1HPMA 5AQXA 3HSCA 2N2RA 5F0XA 1L4VA 5BPLA 2YIOA 1LQIA 1MYNA 2E88A 5EXWA 5EX5A 1FH3A 1NGBA 5AQHA 3LDOA 2BRZA 3A8YA 1HJOA 1NGCA 1ZUTA 2YILA 1ZFUA 2QWOA 1T7EA 1PE4A 1JKZA 4GNIA 3I33A 5AQGA 4AAZA 4KBOA 1VNAA 1JZBA 1WT7A 3SF4D 1CN2A 1HX1A 3D2FA 1KAYA 1I2VA 4FL9A 1I6GA 2MN5A 1NGHA 2KJAA 4H5TA 1NGGA 2LY6A 1LQQA 2KHOA 2YBRC 3GDQA 1C56A 4UAFE 3L6QA 2NY8X 1JZAA 3L4IA 4UADE 1WWNA 5FPMA 2KBJA 3QFUA 2BUPA 1BRZA 2V7ZA 3AY9A 3CQXA 5AQRA 3BK3C 2KBHA 2MBKA 5FPEA 1C55A 2NY9X 1AYJA 1NGIA 3FE1A 1NE5A 2LJMA 4UAEF 1BUPA 3D2EA 1SEGA 2QWPA 2I61A 5BPMA 1KAZA 3C7NB 1ICAA 2LY5A 1B7DA 4KYPA 2QW9A 5FPDA 4HWIA 1ZYWA 2E2FA 2QWQA 2QWRA 3GL1A 1ATSA 1SNBA 4HHFA 2MZ0A 3L56A 2QWLA 5FPNA 2E8AA 1ZYVA 5BPNA 1DJTA 1BK8A 1XRSB 2LT8A 3E7RL 1KAXA 2B68A 2LKBA 1PTXA 3FZFA 1T7AA 3QI7A 1AHOA 3E7UX 2QXLA 2ATBA 1NH5A 1S3XA 1B3CA 3CW4A 5AQPA 3LDNA 2ASCA 2KPYA 2B3CA 1KV0A 3D2FB
chains in the Genus database with same CATH topology
5EY4A 5F2RA 5AQQA 3FZHA 3ATVA 4FSVA 2LN8A 4IO8A 5F1XA 3R2VA 3FZKA 5AQLA 2YIPA 1POIA 1QQOA 3D2EB 1YUWA 5AQTA 5BN9A 5AQUA 3LDQA 4H5RA 5AQZA 3QMLA 3IUCA 3M3ZA 4H5NA 5AQYA 5BN8A 1NGAA 1NGEA 1QQMA 5AQMA 5AQVA 5AQKA 1NGJA 2K35A 2VY6A 5EVZA 5AQSA 3KHWA 2QWNA 3FZMA 1NGDA 3FZLA 5AQFA 3LDLA 5AQWA 3JXUA 2D56A 2GMOA 5AQNA 3KVGA 1BA0A 3LDPA 3QFPA 5AR0A 1QQNA 3KC6A 5AQOA 1BA1A 3ATUA 1NGFA 1ATRA 5AQIA 5AQJA 4H5VA 2QWMA 3C7NA 2JDQD 4H5WA 1DKGD 1HPMA 5AQXA 3HSCA 5F0XA 5BPLA 2YIOA 5EXWA 2E88A 5EX5A 1NGBA 5AQHA 3LDOA 3A8YA 1HJOA 1NGCA 2YILA 2QWOA 4GNIA 3I33A 5AQGA 4KBOA 3SF4D 1HX1A 3D2FA 1KAYA 4FL9A 2MN5A 1NGHA 4H5TA 1NGGA 2KHOA 3GDQA 4UAFE 3L6QA 3L4IA 4UADE 5FPMA 3QFUA 2BUPA 2V7ZA 3AY9A 3CQXA 5AQRA 3BK3C 2MBKA 5FPEA 1NGIA 3FE1A 4UAEF 1BUPA 3D2EA 2QWPA 5BPMA 1KAZA 3C7NB 2QW9A 5FPDA 4HWIA 2E2FA 2QWQA 2QWRA 3GL1A 1ATSA 3L56A 2QWLA 5FPNA 2E8AA 5BPNA 1KAXA 3FZFA 3QI7A 2QXLA 1S3XA 3CW4A 5AQPA 3LDNA 3D2FB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R2V A;  2JDQ D;  2GMO A;  3CW4 A;  4UAF E;  2VY6 A;  4UAE F;  3KC6 A;  3KHW A;  3L56 A;  4UAD E; 
#chains in the Genus database with same CATH topology
 5CY0 A;  5EY4 A;  5F2R A;  5AQQ A;  3FZH A;  3GKU A;  1T0Z A;  3ATV A;  1SN1 A;  4FSV A;  2A7T A;  2LN8 A;  4IO8 A;  1T7B A;  5F1X A;  2LJ7 A;  3R2V A;  3FZK A;  5AQL A;  3KP1 A;  3KOX A;  4AEI A;  2YIP A;  2M8B B;  1SN4 A;  2YEO A;  1OMY A;  2KYQ A;  1POI A;  2E0H A;  2YC1 C;  1MR4 A;  4V1D C;  1QQO A;  3D2E B;  1YUW A;  5AQT A;  1NPI A;  5BN9 A;  1I2U A;  5AQU A;  1ZU3 A;  1BCG A;  1VNB A;  1P00 A;  1T1T A;  3LDQ A;  4H5R A;  3QML A;  5AQZ A;  1ZVE A;  3IUC A;  3M3Z A;  4H5N A;  4UJ0 A;  5AQY A;  2N66 A;  2SN3 A;  1LQH A;  5BN8 A;  2E3F A;  1NGA A;  1OZZ A;  1GPT A;  1NRA A;  1NGE A;  1QQM A;  1N4N A;  1I6F A;  2GL1 A;  5AQM A;  4AB0 A;  1DQ7 A;  5AQV A;  5AQK A;  3PSM A;  3KOY A;  5KK4 A;  1NGJ A;  2K35 A;  2VY6 A;  5EVZ A;  5AQS A;  3KHW A;  2QWN A;  3FZM A;  2KSK A;  1NGD A;  2E3G A;  1ZVG A;  2KBK A;  1CHZ A;  3FZL A;  2G2K A;  1PX9 A;  3KOZ A;  5AQF A;  3LDL A;  5AQW A;  1NRB A;  3JXU A;  4CQK A;  2D56 A;  1P0A A;  2N2Q A;  1JXC A;  2GMO A;  5AQN A;  3KVG A;  1UGL A;  1GPS A;  1BA0 A;  3KOW A;  3LDP A;  3QFP A;  5AR0 A;  1QQN A;  3KC6 A;  5AQO A;  1BA1 A;  1BMR A;  3ATU A;  2N69 A;  1NGF A;  1ATR A;  2LR3 A;  3KP0 A;  4HE7 A;  2KGQ A;  5AQI A;  1K8B A;  2LI7 A;  5AQJ A;  4H5V A;  2QWM A;  1TI5 A;  3C7N A;  1WMT A;  2JDQ D;  4H5W A;  1DKG D;  1HPM A;  5AQX A;  3HSC A;  2N2R A;  5F0X A;  1L4V A;  5BPL A;  2YIO A;  1LQI A;  1MYN A;  2E88 A;  5EXW A;  5EX5 A;  1FH3 A;  1NGB A;  5AQH A;  3LDO A;  2BRZ A;  3A8Y A;  1HJO A;  1NGC A;  1ZUT A;  2YIL A;  1ZFU A;  2QWO A;  1T7E A;  1PE4 A;  1JKZ A;  4GNI A;  3I33 A;  5AQG A;  4AAZ A;  4KBO A;  1VNA A;  1JZB A;  1WT7 A;  3SF4 D;  1CN2 A;  1HX1 A;  3D2F A;  1KAY A;  1I2V A;  4FL9 A;  1I6G A;  2MN5 A;  1NGH A;  2KJA A;  4H5T A;  1NGG A;  2LY6 A;  1LQQ A;  2KHO A;  2YBR C;  3GDQ A;  1C56 A;  4UAF E;  3L6Q A;  2NY8 X;  1JZA A;  3L4I A;  4UAD E;  1WWN A;  5FPM A;  2KBJ A;  3QFU A;  2BUP A;  1BRZ A;  2V7Z A;  3AY9 A;  3CQX A;  5AQR A;  3BK3 C;  2KBH A;  2MBK A;  5FPE A;  1C55 A;  2NY9 X;  1AYJ A;  1NGI A;  3FE1 A;  1NE5 A;  2LJM A;  4UAE F;  1BUP A;  3D2E A;  1SEG A;  2QWP A;  2I61 A;  5BPM A;  1KAZ A;  3C7N B;  1ICA A;  2LY5 A;  1B7D A;  4KYP A;  2QW9 A;  5FPD A;  4HWI A;  1ZYW A;  2E2F A;  2QWQ A;  2QWR A;  3GL1 A;  1ATS A;  1SNB A;  4HHF A;  2MZ0 A;  3L56 A;  2QWL A;  5FPN A;  2E8A A;  1ZYV A;  5BPN A;  1DJT A;  1BK8 A;  1XRS B;  2LT8 A;  3E7R L;  1KAX A;  2B68 A;  2LKB A;  1PTX A;  3FZF A;  1T7A A;  3QI7 A;  1AHO A;  3E7U X;  2QXL A;  2ATB A;  1NH5 A;  1S3X A;  1B3C A;  3CW4 A;  5AQP A;  3LDN A;  2ASC A;  2KPY A;  2B3C A;  1KV0 A;  3D2F B; 
#chains in the Genus database with same CATH homology
 5EY4 A;  5F2R A;  5AQQ A;  3FZH A;  3ATV A;  4FSV A;  2LN8 A;  4IO8 A;  5F1X A;  3R2V A;  3FZK A;  5AQL A;  2YIP A;  1POI A;  1QQO A;  3D2E B;  1YUW A;  5AQT A;  5BN9 A;  5AQU A;  3LDQ A;  4H5R A;  5AQZ A;  3QML A;  3IUC A;  3M3Z A;  4H5N A;  5AQY A;  5BN8 A;  1NGA A;  1NGE A;  1QQM A;  5AQM A;  5AQV A;  5AQK A;  1NGJ A;  2K35 A;  2VY6 A;  5EVZ A;  5AQS A;  3KHW A;  2QWN A;  3FZM A;  1NGD A;  3FZL A;  5AQF A;  3LDL A;  5AQW A;  3JXU A;  2D56 A;  2GMO A;  5AQN A;  3KVG A;  1BA0 A;  3LDP A;  3QFP A;  5AR0 A;  1QQN A;  3KC6 A;  5AQO A;  1BA1 A;  3ATU A;  1NGF A;  1ATR A;  5AQI A;  5AQJ A;  4H5V A;  2QWM A;  3C7N A;  2JDQ D;  4H5W A;  1DKG D;  1HPM A;  5AQX A;  3HSC A;  5F0X A;  5BPL A;  2YIO A;  5EXW A;  2E88 A;  5EX5 A;  1NGB A;  5AQH A;  3LDO A;  3A8Y A;  1HJO A;  1NGC A;  2YIL A;  2QWO A;  4GNI A;  3I33 A;  5AQG A;  4KBO A;  3SF4 D;  1HX1 A;  3D2F A;  1KAY A;  4FL9 A;  2MN5 A;  1NGH A;  4H5T A;  1NGG A;  2KHO A;  3GDQ A;  4UAF E;  3L6Q A;  3L4I A;  4UAD E;  5FPM A;  3QFU A;  2BUP A;  2V7Z A;  3AY9 A;  3CQX A;  5AQR A;  3BK3 C;  2MBK A;  5FPE A;  1NGI A;  3FE1 A;  4UAE F;  1BUP A;  3D2E A;  2QWP A;  5BPM A;  1KAZ A;  3C7N B;  2QW9 A;  5FPD A;  4HWI A;  2E2F A;  2QWQ A;  2QWR A;  3GL1 A;  1ATS A;  3L56 A;  2QWL A;  5FPN A;  2E8A A;  5BPN A;  1KAX A;  3FZF A;  3QI7 A;  2QXL A;  1S3X A;  3CW4 A;  5AQP A;  3LDN A;  3D2F B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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