3L56A

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
202
structure length
194
Chain Sequence
NGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biological and structural characterization of a host-adapting amino acid in influenza virus.
pubmed doi rcsb
molecule tags Viral protein
source organism Influenza a virus
molecule keywords Polymerase PB2
total genus 51
structure length 194
sequence length 202
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3l56A02
4UADE 2JDQD 2VY6A 4UAEF 3CW4A 4UAFE 3R2VA 3KHWA 2GMOA 3L56A 3KC6A
chains in the Genus database with same CATH superfamily
2N2RA 3PSMA 2JDQD 5AQTA 2I61A 3QI7A 1NGGA 2KYQA 1NH5A 2KBHA 3ATUA 4GNIA 1T1TA 5EVZA 1JKZA 1ZYWA 1NGIA 3QMLA 3FZHA 3QFUA 3LDQA 1QQNA 2MN5A 4FSVA 1I2VA 2MBKA 4V1DC 2E3FA 1KAXA 1I2UA 4AB0A 3KP0A 1ZVEA 5AQFA 2GMOA 2E3GA 4IO8A 4FL9A 1I6GA 2YILA 1NGBA 2E2FA 3QFPA 4UJ0A 2N66A 1N4NA 1JZAA 2YIPA 2SN3A 3GL1A 1BMRA 3KOXA 1KV0A 1OZZA 1CHZA 1WT7A 1SNBA 3KC6A 1ATRA 5AR0A 5AQIA 5BN9A 5BPMA 2LKBA 2MZ0A 2QWQA 3CW4A 1GPSA 5F1XA 1SEGA 5FPMA 3SF4D 1VNBA 3GDQA 5EY4A 5F2RA 1B7DA 1P00A 1I6FA 2KBKA 5FPDA 2KSKA 3C7NA 2KPYA 1ZFUA 3KVGA 1NGJA 3L4IA 5BPNA 1NE5A 2LY5A 5BN8A 3I33A 1MYNA 2KGQA 1DKGD 4AEIA 3FE1A 1K8BA 1BRZA 3C7NB 5EX5A 1HJOA 2B68A 2KBJA 5FPEA 4HWIA 3LDLA 1NRBA 2GL1A 2YBRC 4H5TA 1BA0A 5AQZA 1TI5A 3E7RL 4AAZA 1QQOA 5AQKA 3R2VA 3A8YA 5AQNA 4H5RA 3LDOA 5AQSA 1NGCA 1NGHA 2KHOA 2QWNA 2QWMA 2YEOA 3BK3C 2KJAA 3FZLA 1ZYVA 1DJTA 3E7UX 1NPIA 3LDNA 5AQLA 5AQGA 5AQRA 2G2KA 1C55A 4H5VA 1HX1A 2QW9A 2ATBA 2NY8X 3JXUA 1WMTA 5AQYA 1ATSA 1MR4A 3D2EA 1B3CA 5KK4A 2N2QA 2V7ZA 2LI7A 5AQOA 1T0ZA 2E8AA 1JXCA 2E0HA 1PE4A 1BUPA 4HHFA 3FZKA 1AHOA 3ATVA 1C56A 1NRAA 4H5NA 4UAFE 3D2EB 3LDPA 1GPTA 1DQ7A 1NGDA 2K35A 2YIOA 3D2FA 1CN2A 1JZBA 5AQWA 1XRSB 1FH3A 1HPMA 1WWNA 5AQVA 5FPNA 5AQUA 3AY9A 3KOYA 5AQPA 3KHWA 1VNAA 1SN4A 1T7BA 1NGFA 2BUPA 3HSCA 3L6QA 4UADE 1POIA 3GKUA 3D2FB 5EXWA 5AQHA 3KOWA 2QWLA 5F0XA 2LT8A 2N69A 1ZU3A 3IUCA 4KBOA 2D56A 3KP1A 5AQXA 3CQXA 4CQKA 5AQJA 2LN8A 2QXLA 2A7TA 2QWRA 1KAZA 1LQHA 1BA1A 1LQQA 5AQMA 2BRZA 4UAEF 2LJ7A 2E88A 5AQQA 1PTXA 2LJMA 1P0AA 2B3CA 5CY0A 1BK8A 3FZFA 2LY6A 2M8BB 2QWOA 1S3XA 2VY6A 1OMYA 1NGAA 1PX9A 1ZUTA 3KOZA 1UGLA 4H5WA 1L4VA 1T7AA 2YC1C 2NY9X 3M3ZA 2LR3A 1NGEA 1LQIA 1AYJA 4KYPA 1T7EA 4HE7A 2ASCA 1KAYA 1SN1A 1ZVGA 3FZMA 5BPLA 1BCGA 1QQMA 1ICAA 3L56A 1YUWA 2QWPA
chains in the Genus database with same CATH topology
2JDQD 5AQTA 3QI7A 1NGGA 3ATUA 4GNIA 5EVZA 1NGIA 3QMLA 3FZHA 3QFUA 3LDQA 1QQNA 2MN5A 4FSVA 2MBKA 1KAXA 5AQFA 2GMOA 4IO8A 4FL9A 2YILA 1NGBA 2E2FA 3QFPA 2YIPA 3GL1A 3KC6A 1ATRA 5AR0A 5AQIA 5BN9A 5BPMA 2QWQA 3CW4A 5F1XA 5FPMA 3SF4D 3GDQA 5F2RA 5FPDA 3C7NA 3KVGA 1NGJA 3L4IA 5BPNA 5BN8A 3I33A 1DKGD 3FE1A 3C7NB 5EX5A 1HJOA 5FPEA 4HWIA 3LDLA 4H5TA 1BA0A 5AQZA 1QQOA 5AQKA 3R2VA 3A8YA 5AQNA 4H5RA 3LDOA 5AQSA 1NGCA 1NGHA 2KHOA 2QWNA 2QWMA 3BK3C 5EY4A 3FZLA 3LDNA 5AQLA 5AQGA 5AQRA 4H5VA 1HX1A 2QW9A 3JXUA 5AQYA 1ATSA 3D2EA 2V7ZA 5AQOA 2E8AA 1BUPA 3FZKA 3ATVA 4H5NA 4UAFE 3D2EB 3LDPA 1NGDA 2K35A 2YIOA 3D2FA 5AQWA 1HPMA 5AQVA 5FPNA 5AQUA 3AY9A 5AQPA 3KHWA 2BUPA 1NGFA 3HSCA 3L6QA 4UADE 1POIA 3D2FB 5EXWA 5AQHA 2QWLA 5F0XA 3IUCA 4KBOA 2D56A 5AQXA 3CQXA 5AQJA 2LN8A 2QXLA 2QWRA 1KAZA 1BA1A 5AQMA 4UAEF 2E88A 5AQQA 3FZFA 2VY6A 2QWOA 1S3XA 1NGAA 4H5WA 3M3ZA 1NGEA 3FZMA 1KAYA 5BPLA 1QQMA 3L56A 1YUWA 2QWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UAD E;  2JDQ D;  2VY6 A;  4UAE F;  3CW4 A;  4UAF E;  3R2V A;  3KHW A;  2GMO A;  3L56 A;  3KC6 A; 
#chains in the Genus database with same CATH topology
 2N2R A;  3PSM A;  2JDQ D;  5AQT A;  2I61 A;  3QI7 A;  1NGG A;  2KYQ A;  1NH5 A;  2KBH A;  3ATU A;  4GNI A;  1T1T A;  5EVZ A;  1JKZ A;  1ZYW A;  1NGI A;  3QML A;  3FZH A;  3QFU A;  3LDQ A;  1QQN A;  2MN5 A;  4FSV A;  1I2V A;  2MBK A;  4V1D C;  2E3F A;  1KAX A;  1I2U A;  4AB0 A;  3KP0 A;  1ZVE A;  5AQF A;  2GMO A;  2E3G A;  4IO8 A;  4FL9 A;  1I6G A;  2YIL A;  1NGB A;  2E2F A;  3QFP A;  4UJ0 A;  2N66 A;  1N4N A;  1JZA A;  2YIP A;  2SN3 A;  3GL1 A;  1BMR A;  3KOX A;  1KV0 A;  1OZZ A;  1CHZ A;  1WT7 A;  1SNB A;  3KC6 A;  1ATR A;  5AR0 A;  5AQI A;  5BN9 A;  5BPM A;  2LKB A;  2MZ0 A;  2QWQ A;  3CW4 A;  1GPS A;  5F1X A;  1SEG A;  5FPM A;  3SF4 D;  1VNB A;  3GDQ A;  5EY4 A;  5F2R A;  1B7D A;  1P00 A;  1I6F A;  2KBK A;  5FPD A;  2KSK A;  3C7N A;  2KPY A;  1ZFU A;  3KVG A;  1NGJ A;  3L4I A;  5BPN A;  1NE5 A;  2LY5 A;  5BN8 A;  3I33 A;  1MYN A;  2KGQ A;  1DKG D;  4AEI A;  3FE1 A;  1K8B A;  1BRZ A;  3C7N B;  5EX5 A;  1HJO A;  2B68 A;  2KBJ A;  5FPE A;  4HWI A;  3LDL A;  1NRB A;  2GL1 A;  2YBR C;  4H5T A;  1BA0 A;  5AQZ A;  1TI5 A;  3E7R L;  4AAZ A;  1QQO A;  5AQK A;  3R2V A;  3A8Y A;  5AQN A;  4H5R A;  3LDO A;  5AQS A;  1NGC A;  1NGH A;  2KHO A;  2QWN A;  2QWM A;  2YEO A;  3BK3 C;  2KJA A;  3FZL A;  1ZYV A;  1DJT A;  3E7U X;  1NPI A;  3LDN A;  5AQL A;  5AQG A;  5AQR A;  2G2K A;  1C55 A;  4H5V A;  1HX1 A;  2QW9 A;  2ATB A;  2NY8 X;  3JXU A;  1WMT A;  5AQY A;  1ATS A;  1MR4 A;  3D2E A;  1B3C A;  5KK4 A;  2N2Q A;  2V7Z A;  2LI7 A;  5AQO A;  1T0Z A;  2E8A A;  1JXC A;  2E0H A;  1PE4 A;  1BUP A;  4HHF A;  3FZK A;  1AHO A;  3ATV A;  1C56 A;  1NRA A;  4H5N A;  4UAF E;  3D2E B;  3LDP A;  1GPT A;  1DQ7 A;  1NGD A;  2K35 A;  2YIO A;  3D2F A;  1CN2 A;  1JZB A;  5AQW A;  1XRS B;  1FH3 A;  1HPM A;  1WWN A;  5AQV A;  5FPN A;  5AQU A;  3AY9 A;  3KOY A;  5AQP A;  3KHW A;  1VNA A;  1SN4 A;  1T7B A;  1NGF A;  2BUP A;  3HSC A;  3L6Q A;  4UAD E;  1POI A;  3GKU A;  3D2F B;  5EXW A;  5AQH A;  3KOW A;  2QWL A;  5F0X A;  2LT8 A;  2N69 A;  1ZU3 A;  3IUC A;  4KBO A;  2D56 A;  3KP1 A;  5AQX A;  3CQX A;  4CQK A;  5AQJ A;  2LN8 A;  2QXL A;  2A7T A;  2QWR A;  1KAZ A;  1LQH A;  1BA1 A;  1LQQ A;  5AQM A;  2BRZ A;  4UAE F;  2LJ7 A;  2E88 A;  5AQQ A;  1PTX A;  2LJM A;  1P0A A;  2B3C A;  5CY0 A;  1BK8 A;  3FZF A;  2LY6 A;  2M8B B;  2QWO A;  1S3X A;  2VY6 A;  1OMY A;  1NGA A;  1PX9 A;  1ZUT A;  3KOZ A;  1UGL A;  4H5W A;  1L4V A;  1T7A A;  2YC1 C;  2NY9 X;  3M3Z A;  2LR3 A;  1NGE A;  1LQI A;  1AYJ A;  4KYP A;  1T7E A;  4HE7 A;  2ASC A;  1KAY A;  1SN1 A;  1ZVG A;  3FZM A;  5BPL A;  1BCG A;  1QQM A;  1ICA A;  3L56 A;  1YUW A;  2QWP A; 
#chains in the Genus database with same CATH homology
 2JDQ D;  5AQT A;  3QI7 A;  1NGG A;  3ATU A;  4GNI A;  5EVZ A;  1NGI A;  3QML A;  3FZH A;  3QFU A;  3LDQ A;  1QQN A;  2MN5 A;  4FSV A;  2MBK A;  1KAX A;  5AQF A;  2GMO A;  4IO8 A;  4FL9 A;  2YIL A;  1NGB A;  2E2F A;  3QFP A;  2YIP A;  3GL1 A;  3KC6 A;  1ATR A;  5AR0 A;  5AQI A;  5BN9 A;  5BPM A;  2QWQ A;  3CW4 A;  5F1X A;  5FPM A;  3SF4 D;  3GDQ A;  5F2R A;  5FPD A;  3C7N A;  3KVG A;  1NGJ A;  3L4I A;  5BPN A;  5BN8 A;  3I33 A;  1DKG D;  3FE1 A;  3C7N B;  5EX5 A;  1HJO A;  5FPE A;  4HWI A;  3LDL A;  4H5T A;  1BA0 A;  5AQZ A;  1QQO A;  5AQK A;  3R2V A;  3A8Y A;  5AQN A;  4H5R A;  3LDO A;  5AQS A;  1NGC A;  1NGH A;  2KHO A;  2QWN A;  2QWM A;  3BK3 C;  5EY4 A;  3FZL A;  3LDN A;  5AQL A;  5AQG A;  5AQR A;  4H5V A;  1HX1 A;  2QW9 A;  3JXU A;  5AQY A;  1ATS A;  3D2E A;  2V7Z A;  5AQO A;  2E8A A;  1BUP A;  3FZK A;  3ATV A;  4H5N A;  4UAF E;  3D2E B;  3LDP A;  1NGD A;  2K35 A;  2YIO A;  3D2F A;  5AQW A;  1HPM A;  5AQV A;  5FPN A;  5AQU A;  3AY9 A;  5AQP A;  3KHW A;  2BUP A;  1NGF A;  3HSC A;  3L6Q A;  4UAD E;  1POI A;  3D2F B;  5EXW A;  5AQH A;  2QWL A;  5F0X A;  3IUC A;  4KBO A;  2D56 A;  5AQX A;  3CQX A;  5AQJ A;  2LN8 A;  2QXL A;  2QWR A;  1KAZ A;  1BA1 A;  5AQM A;  4UAE F;  2E88 A;  5AQQ A;  3FZF A;  2VY6 A;  2QWO A;  1S3X A;  1NGA A;  4H5W A;  3M3Z A;  1NGE A;  3FZM A;  1KAY A;  5BPL A;  1QQM A;  3L56 A;  1YUW A;  2QWP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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