3E7RL

X-ray crystal structure of racemic plectasin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
40
structure length
40
Chain Sequence
GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Racemic crystallography of synthetic protein enantiomers used to determine the X-ray structure of plectasin by direct methods
pubmed doi rcsb
molecule keywords Plectasin
molecule tags Antimicrobial protein
total genus 9
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2008-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 3e7rL01
1BRZA 3E7UX 2KBJA 1OZZA 1P00A 2BRZA 2GL1A 1ZYVA 1I2VA 2NY8X 2N66A 1ZYWA 1T1TA 1ZVGA 4AEIA 5KK4A 2NY9X 1GPTA 2LR3A 1B7DA 1VNBA 1JKZA 2KJAA 1JZBA 1LQHA 1GPSA 1ICAA 1CHZA 1T0ZA 2YEOA 1SN1A 2LI7A 2KBKA 2KPYA 1WT7A 1DQ7A 2ASCA 1B3CA 1WMTA 1KV0A 2E0HA 1C55A 1L4VA 1PX9A 1BMRA 4AAZA 2KSKA 1SN4A 1ZUTA 4HHFA 2YC1C 2KGQA 2LY5A 3PSMA 2KYQA 1ZVEA 4HE7A 1BK8A 2N69A 4KYPA 1ZU3A 1SEGA 1T7EA 4UJ0A 1PE4A 2LJMA 1I6GA 2LY6A 2KBHA 3E7RL 1NH5A 1ZFUA 1FH3A 2YBRC 2E3FA 2I61A 2A7TA 1TI5A 1NPIA 2SN3A 4AB0A 2B68A 1DJTA 1JXCA 1WWNA 1PTXA 1C56A 1MR4A 2LKBA 1I6FA 1LQIA 2M8BB 2LT8A 1AHOA 1BCGA 2B3CA 5CY0A 1CN2A 2E3GA 1P0AA 1N4NA 1NRBA 1OMYA 1T7AA 4V1DC 2N2QA 2N2RA 1MYNA 1JZAA 2ATBA 1NE5A 1VNAA 1LQQA 4CQKA 1SNBA 1I2UA 1T7BA 1AYJA 2MZ0A 1NRAA 2LJ7A
chains in the Genus database with same CATH superfamily
4GNIA 2QWMA 1BRZA 3E7UX 3FZKA 1OZZA 2BRZA 1P00A 2G2KA 2KBJA 3FZMA 1UGLA 2GL1A 1ZYVA 3KOYA 5AQTA 1I2VA 2NY8X 2N66A 3QFPA 1BUPA 3SF4D 1ZYWA 3D2FA 3KOZA 3LDQA 1NGBA 1T1TA 1ZVGA 4AEIA 1NGCA 3BK3C 3KOXA 5KK4A 5AQOA 1NGIA 5BN8A 2QWOA 5BPLA 2NY9X 5AQIA 1GPTA 1HX1A 2LR3A 2QWPA 5F2RA 1B7DA 1VNBA 3KP0A 1KAYA 1BA1A 1XRSB 2K35A 2KJAA 4UADE 5AQZA 5F1XA 1JKZA 1JZBA 3ATUA 1K8BA 1LQHA 5EY4A 3KC6A 2E88A 1GPSA 3FE1A 1ICAA 1CHZA 1T0ZA 2YEOA 1ATRA 1SN1A 2LI7A 2KBKA 3LDPA 2KPYA 1NGGA 2MBKA 3LDOA 1QQOA 1WT7A 4FL9A 5F0XA 1DQ7A 3CW4A 5EX5A 2ASCA 4H5RA 1QQNA 1B3CA 1WMTA 4UAFE 5AQMA 1KV0A 3A8YA 2E0HA 3L6QA 5AQWA 2VY6A 1NGJA 1C55A 2JDQD 5AR0A 1L4VA 1PX9A 1BMRA 5FPEA 1KAZA 2YIOA 4AAZA 2KSKA 2MN5A 1SN4A 3GKUA 1NGFA 1ZUTA 2YC1C 3HSCA 3LDLA 3QMLA 4HHFA 4H5TA 2KGQA 2LY5A 1BA0A 3PSMA 5FPNA 2GMOA 5AQPA 2LN8A 2KYQA 1ZVEA 3FZHA 5BN9A 4HE7A 5EXWA 5AQFA 2N69A 1BK8A 1ATSA 4KYPA 1NGAA 1ZU3A 5BPMA 1SEGA 2V7ZA 1T7EA 3R2VA 4UJ0A 1PE4A 1YUWA 4KBOA 5AQXA 2LJMA 1NGHA 3FZFA 3KVGA 4IO8A 1I6GA 2LY6A 5AQVA 1S3XA 2KBHA 3E7RL 3QI7A 1NH5A 3D2EB 3AY9A 1ZFUA 2YILA 2YBRC 1FH3A 5FPMA 2E3FA 2KHOA 3L56A 3M3ZA 2D56A 1DKGD 2A7TA 2I61A 2QWNA 1TI5A 1NPIA 2QWQA 2SN3A 4UAEF 4AB0A 2B68A 3GL1A 1DJTA 3D2EA 3QFUA 5AQSA 1JXCA 1WWNA 2QW9A 2QWRA 1PTXA 2BUPA 5AQLA 1C56A 4H5VA 2QXLA 4H5NA 5BPNA 3L4IA 1MR4A 2LKBA 1I6FA 3D2FB 3KHWA 3FZLA 3KP1A 1LQIA 2M8BB 5AQYA 2LT8A 3IUCA 3JXUA 1AHOA 1BCGA 2B3CA 3C7NB 4FSVA 5CY0A 1CN2A 4H5WA 5AQNA 2E3GA 3I33A 4HWIA 1P0AA 5AQQA 1QQMA 3CQXA 1N4NA 5AQGA 5AQUA 1NRBA 2QWLA 1OMYA 1HJOA 5AQKA 3GDQA 1POIA 1T7AA 3ATVA 3C7NA 4V1DC 2N2QA 2N2RA 2E2FA 5FPDA 1HPMA 1MYNA 1JZAA 2YIPA 5AQHA 2ATBA 5AQJA 1NE5A 5AQRA 1VNAA 1LQQA 1NGDA 5EVZA 4CQKA 1SNBA 1I2UA 1T7BA 3LDNA 1AYJA 2MZ0A 1NRAA 1NGEA 2E8AA 1KAXA 2LJ7A 3KOWA
chains in the Genus database with same CATH topology
1BRZA 3E7UX 2KBJA 1OZZA 1P00A 2BRZA 2GL1A 1ZYVA 1I2VA 2NY8X 2N66A 1ZYWA 1T1TA 1ZVGA 4AEIA 5KK4A 2NY9X 1GPTA 2LR3A 1B7DA 1VNBA 1JKZA 2KJAA 1JZBA 1LQHA 1GPSA 1ICAA 1CHZA 1T0ZA 2YEOA 1SN1A 2LI7A 2KBKA 2KPYA 1WT7A 1DQ7A 2ASCA 1B3CA 1WMTA 1KV0A 2E0HA 1C55A 1L4VA 1PX9A 1BMRA 4AAZA 2KSKA 1SN4A 1ZUTA 4HHFA 2YC1C 2KGQA 2LY5A 3PSMA 2KYQA 1ZVEA 4HE7A 1BK8A 2N69A 4KYPA 1ZU3A 1SEGA 1T7EA 4UJ0A 1PE4A 2LJMA 1I6GA 2LY6A 2KBHA 3E7RL 1NH5A 1ZFUA 1FH3A 2YBRC 2E3FA 2I61A 2A7TA 1TI5A 1NPIA 2SN3A 4AB0A 2B68A 1DJTA 1JXCA 1WWNA 1PTXA 1C56A 1MR4A 2LKBA 1I6FA 1LQIA 2M8BB 2LT8A 1AHOA 1BCGA 2B3CA 5CY0A 1CN2A 2E3GA 1P0AA 1N4NA 1NRBA 1OMYA 1T7AA 4V1DC 2N2QA 2N2RA 1MYNA 1JZAA 2ATBA 1NE5A 1VNAA 1LQQA 4CQKA 1SNBA 1I2UA 1T7BA 1AYJA 2MZ0A 1NRAA 2LJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BRZ A;  3E7U X;  2KBJ A;  1OZZ A;  1P00 A;  2BRZ A;  2GL1 A;  1ZYV A;  1I2V A;  2NY8 X;  2N66 A;  1ZYW A;  1T1T A;  1ZVG A;  4AEI A;  5KK4 A;  2NY9 X;  1GPT A;  2LR3 A;  1B7D A;  1VNB A;  1JKZ A;  2KJA A;  1JZB A;  1LQH A;  1GPS A;  1ICA A;  1CHZ A;  1T0Z A;  2YEO A;  1SN1 A;  2LI7 A;  2KBK A;  2KPY A;  1WT7 A;  1DQ7 A;  2ASC A;  1B3C A;  1WMT A;  1KV0 A;  2E0H A;  1C55 A;  1L4V A;  1PX9 A;  1BMR A;  4AAZ A;  2KSK A;  1SN4 A;  1ZUT A;  4HHF A;  2YC1 C;  2KGQ A;  2LY5 A;  3PSM A;  2KYQ A;  1ZVE A;  4HE7 A;  1BK8 A;  2N69 A;  4KYP A;  1ZU3 A;  1SEG A;  1T7E A;  4UJ0 A;  1PE4 A;  2LJM A;  1I6G A;  2LY6 A;  2KBH A;  3E7R L;  1NH5 A;  1ZFU A;  1FH3 A;  2YBR C;  2E3F A;  2I61 A;  2A7T A;  1TI5 A;  1NPI A;  2SN3 A;  4AB0 A;  2B68 A;  1DJT A;  1JXC A;  1WWN A;  1PTX A;  1C56 A;  1MR4 A;  2LKB A;  1I6F A;  1LQI A;  2M8B B;  2LT8 A;  1AHO A;  1BCG A;  2B3C A;  5CY0 A;  1CN2 A;  2E3G A;  1P0A A;  1N4N A;  1NRB A;  1OMY A;  1T7A A;  4V1D C;  2N2Q A;  2N2R A;  1MYN A;  1JZA A;  2ATB A;  1NE5 A;  1VNA A;  1LQQ A;  4CQK A;  1SNB A;  1I2U A;  1T7B A;  1AYJ A;  2MZ0 A;  1NRA A;  2LJ7 A; 
#chains in the Genus database with same CATH topology
 4GNI A;  2QWM A;  1BRZ A;  3E7U X;  3FZK A;  1OZZ A;  2BRZ A;  1P00 A;  2G2K A;  2KBJ A;  3FZM A;  1UGL A;  2GL1 A;  1ZYV A;  3KOY A;  5AQT A;  1I2V A;  2NY8 X;  2N66 A;  3QFP A;  1BUP A;  3SF4 D;  1ZYW A;  3D2F A;  3KOZ A;  3LDQ A;  1NGB A;  1T1T A;  1ZVG A;  4AEI A;  1NGC A;  3BK3 C;  3KOX A;  5KK4 A;  5AQO A;  1NGI A;  5BN8 A;  2QWO A;  5BPL A;  2NY9 X;  5AQI A;  1GPT A;  1HX1 A;  2LR3 A;  2QWP A;  5F2R A;  1B7D A;  1VNB A;  3KP0 A;  1KAY A;  1BA1 A;  1XRS B;  2K35 A;  2KJA A;  4UAD E;  5AQZ A;  5F1X A;  1JKZ A;  1JZB A;  3ATU A;  1K8B A;  1LQH A;  5EY4 A;  3KC6 A;  2E88 A;  1GPS A;  3FE1 A;  1ICA A;  1CHZ A;  1T0Z A;  2YEO A;  1ATR A;  1SN1 A;  2LI7 A;  2KBK A;  3LDP A;  2KPY A;  1NGG A;  2MBK A;  3LDO A;  1QQO A;  1WT7 A;  4FL9 A;  5F0X A;  1DQ7 A;  3CW4 A;  5EX5 A;  2ASC A;  4H5R A;  1QQN A;  1B3C A;  1WMT A;  4UAF E;  5AQM A;  1KV0 A;  3A8Y A;  2E0H A;  3L6Q A;  5AQW A;  2VY6 A;  1NGJ A;  1C55 A;  2JDQ D;  5AR0 A;  1L4V A;  1PX9 A;  1BMR A;  5FPE A;  1KAZ A;  2YIO A;  4AAZ A;  2KSK A;  2MN5 A;  1SN4 A;  3GKU A;  1NGF A;  1ZUT A;  2YC1 C;  3HSC A;  3LDL A;  3QML A;  4HHF A;  4H5T A;  2KGQ A;  2LY5 A;  1BA0 A;  3PSM A;  5FPN A;  2GMO A;  5AQP A;  2LN8 A;  2KYQ A;  1ZVE A;  3FZH A;  5BN9 A;  4HE7 A;  5EXW A;  5AQF A;  2N69 A;  1BK8 A;  1ATS A;  4KYP A;  1NGA A;  1ZU3 A;  5BPM A;  1SEG A;  2V7Z A;  1T7E A;  3R2V A;  4UJ0 A;  1PE4 A;  1YUW A;  4KBO A;  5AQX A;  2LJM A;  1NGH A;  3FZF A;  3KVG A;  4IO8 A;  1I6G A;  2LY6 A;  5AQV A;  1S3X A;  2KBH A;  3E7R L;  3QI7 A;  1NH5 A;  3D2E B;  3AY9 A;  1ZFU A;  2YIL A;  2YBR C;  1FH3 A;  5FPM A;  2E3F A;  2KHO A;  3L56 A;  3M3Z A;  2D56 A;  1DKG D;  2A7T A;  2I61 A;  2QWN A;  1TI5 A;  1NPI A;  2QWQ A;  2SN3 A;  4UAE F;  4AB0 A;  2B68 A;  3GL1 A;  1DJT A;  3D2E A;  3QFU A;  5AQS A;  1JXC A;  1WWN A;  2QW9 A;  2QWR A;  1PTX A;  2BUP A;  5AQL A;  1C56 A;  4H5V A;  2QXL A;  4H5N A;  5BPN A;  3L4I A;  1MR4 A;  2LKB A;  1I6F A;  3D2F B;  3KHW A;  3FZL A;  3KP1 A;  1LQI A;  2M8B B;  5AQY A;  2LT8 A;  3IUC A;  3JXU A;  1AHO A;  1BCG A;  2B3C A;  3C7N B;  4FSV A;  5CY0 A;  1CN2 A;  4H5W A;  5AQN A;  2E3G A;  3I33 A;  4HWI A;  1P0A A;  5AQQ A;  1QQM A;  3CQX A;  1N4N A;  5AQG A;  5AQU A;  1NRB A;  2QWL A;  1OMY A;  1HJO A;  5AQK A;  3GDQ A;  1POI A;  1T7A A;  3ATV A;  3C7N A;  4V1D C;  2N2Q A;  2N2R A;  2E2F A;  5FPD A;  1HPM A;  1MYN A;  1JZA A;  2YIP A;  5AQH A;  2ATB A;  5AQJ A;  1NE5 A;  5AQR A;  1VNA A;  1LQQ A;  1NGD A;  5EVZ A;  4CQK A;  1SNB A;  1I2U A;  1T7B A;  3LDN A;  1AYJ A;  2MZ0 A;  1NRA A;  1NGE A;  2E8A A;  1KAX A;  2LJ7 A;  3KOW A; 
#chains in the Genus database with same CATH homology
 1BRZ A;  3E7U X;  2KBJ A;  1OZZ A;  1P00 A;  2BRZ A;  2GL1 A;  1ZYV A;  1I2V A;  2NY8 X;  2N66 A;  1ZYW A;  1T1T A;  1ZVG A;  4AEI A;  5KK4 A;  2NY9 X;  1GPT A;  2LR3 A;  1B7D A;  1VNB A;  1JKZ A;  2KJA A;  1JZB A;  1LQH A;  1GPS A;  1ICA A;  1CHZ A;  1T0Z A;  2YEO A;  1SN1 A;  2LI7 A;  2KBK A;  2KPY A;  1WT7 A;  1DQ7 A;  2ASC A;  1B3C A;  1WMT A;  1KV0 A;  2E0H A;  1C55 A;  1L4V A;  1PX9 A;  1BMR A;  4AAZ A;  2KSK A;  1SN4 A;  1ZUT A;  4HHF A;  2YC1 C;  2KGQ A;  2LY5 A;  3PSM A;  2KYQ A;  1ZVE A;  4HE7 A;  1BK8 A;  2N69 A;  4KYP A;  1ZU3 A;  1SEG A;  1T7E A;  4UJ0 A;  1PE4 A;  2LJM A;  1I6G A;  2LY6 A;  2KBH A;  3E7R L;  1NH5 A;  1ZFU A;  1FH3 A;  2YBR C;  2E3F A;  2I61 A;  2A7T A;  1TI5 A;  1NPI A;  2SN3 A;  4AB0 A;  2B68 A;  1DJT A;  1JXC A;  1WWN A;  1PTX A;  1C56 A;  1MR4 A;  2LKB A;  1I6F A;  1LQI A;  2M8B B;  2LT8 A;  1AHO A;  1BCG A;  2B3C A;  5CY0 A;  1CN2 A;  2E3G A;  1P0A A;  1N4N A;  1NRB A;  1OMY A;  1T7A A;  4V1D C;  2N2Q A;  2N2R A;  1MYN A;  1JZA A;  2ATB A;  1NE5 A;  1VNA A;  1LQQ A;  4CQK A;  1SNB A;  1I2U A;  1T7B A;  1AYJ A;  2MZ0 A;  1NRA A;  2LJ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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