3E7RL

X-ray crystal structure of racemic plectasin
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
40
structure length
40
Chain Sequence
GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Racemic crystallography of synthetic protein enantiomers used to determine the X-ray structure of plectasin by direct methods
pubmed doi rcsb
molecule keywords Plectasin
molecule tags Antimicrobial protein
total genus 9
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2008-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 3e7rL01
3E7RL 2E3GA 1GPTA 1NRAA 1N4NA 1DJTA 1L4VA 1PTXA 1PE4A 1SNBA 2E3FA 5KK4A 1PX9A 1FH3A 1KV0A 1T7EA 2KSKA 4KYPA 4AB0A 1JKZA 1LQHA 1T1TA 1ICAA 1ZFUA 2E0HA 2LT8A 1B3CA 1SN1A 4HE7A 1NH5A 1NPIA 2LKBA 1P0AA 1NE5A 1ZU3A 2LR3A 1C56A 1T7BA 1ZYVA 1T7AA 1I6FA 2MZ0A 1BRZA 1C55A 2KPYA 2N69A 2NY9X 1GPSA 1SEGA 1WWNA 1LQIA 1T0ZA 1ZVGA 2KYQA 1WT7A 2N66A 2LY6A 2A7TA 1TI5A 1ZVEA 2LI7A 1VNBA 2KBHA 2LJ7A 2N2QA 1CHZA 1VNAA 1NRBA 1I2UA 2M8BB 2BRZA 1DQ7A 2NY8X 4V1DC 1BK8A 2GL1A 2LY5A 2ATBA 1OMYA 2KGQA 1JXCA 1I2VA 1I6GA 1LQQA 2YBRC 1JZBA 1JZAA 1WMTA 1ZYWA 3E7UX 1BMRA 1AHOA 1BCGA 1ZUTA 2I61A 1MR4A 2B68A 2YC1C 5CY0A 4CQKA 2ASCA 1P00A 4AAZA 4AEIA 1AYJA 2KBKA 3PSMA 2B3CA 2SN3A 4HHFA 2KJAA 2YEOA 2N2RA 1CN2A 1OZZA 1SN4A 1B7DA 4UJ0A 1MYNA 2LJMA 2KBJA
chains in the Genus database with same CATH superfamily
3E7RL 3KOXA 2E3GA 1GPTA 5FPEA 1NRAA 3GDQA 5F2RA 3FZHA 5AQHA 3ATVA 1UGLA 1DJTA 1N4NA 1L4VA 1PTXA 1PE4A 4UAEF 1ATRA 2E3FA 5KK4A 1PX9A 1FH3A 3LDQA 1KV0A 1T7EA 5F1XA 2KHOA 1BA0A 4KBOA 3LDPA 4H5RA 1NGAA 2KSKA 5EX5A 3CW4A 2YIPA 2VY6A 4KYPA 1LQHA 4AB0A 1JKZA 1T1TA 1ICAA 3HSCA 1ZFUA 1NGJA 5AQPA 2QWPA 5AQFA 4H5NA 2E0HA 2LT8A 2QWMA 5AQOA 1B3CA 2YIOA 3QMLA 3AY9A 4IO8A 1SN1A 4HE7A 2JDQD 3FZKA 1NH5A 5AQUA 1K8BA 3KOZA 1NPIA 2LKBA 3LDOA 1XRSB 4H5TA 1P0AA 5BN8A 2QWRA 1NE5A 1ZU3A 2LR3A 3R2VA 1C56A 3JXUA 4H5WA 1T7BA 3A8YA 3BK3C 3L6QA 1ZYVA 2QWNA 3D2FB 1T7AA 5FPDA 1POIA 3LDLA 1I6FA 2MZ0A 1BRZA 1NGCA 1C55A 2KPYA 3FZMA 2N69A 3KC6A 5EY4A 2E88A 2NY9X 5AQRA 1GPSA 1SEGA 5FPNA 1WWNA 5AQSA 1LQIA 3L56A 5BPNA 1QQOA 5AQGA 3C7NB 3KP0A 1T0ZA 1ZVGA 5EVZA 5AQXA 3SF4D 1WT7A 1YUWA 2KYQA 3QFUA 5EXWA 3C7NA 2N66A 4HWIA 3IUCA 1KAXA 2LY6A 2QWLA 3KVGA 2E8AA 2A7TA 2KBJA 1TI5A 1ZVEA 2V7ZA 5BPMA 1NGDA 2LI7A 1VNBA 2KBHA 1NGBA 3CQXA 2LJ7A 3KOWA 2N2QA 1ATSA 5BPLA 5AQWA 1NGIA 1CHZA 1VNAA 1NRBA 3LDNA 2BUPA 2K35A 1I2UA 5BN9A 2GMOA 1S3XA 2YILA 2M8BB 1HX1A 2MBKA 1BUPA 3D2FA 2BRZA 1DQ7A 1BA1A 5AR0A 2NY8X 4V1DC 3D2EB 1BK8A 1NGEA 2GL1A 2QXLA 3KOYA 1HPMA 3ATUA 5AQNA 2LY5A 2G2KA 3FE1A 2ATBA 4UAFE 2LN8A 4UADE 4H5VA 5AQIA 1OMYA 3D2EA 3GKUA 2KGQA 1JXCA 4FSVA 1KAYA 1QQMA 1I2VA 2MN5A 3L4IA 1LQQA 1I6GA 5AQMA 2YBRC 1JZBA 1HJOA 1JZAA 1WMTA 1ZYWA 3E7UX 5F0XA 4GNIA 1BMRA 1AHOA 4FL9A 1NGHA 1DKGD 3I33A 5AQLA 1BCGA 1ZUTA 3GL1A 1NGGA 2I61A 1MR4A 5AQJA 5AQTA 5AQKA 2B68A 2YC1C 5FPMA 4CQKA 5CY0A 2ASCA 1P00A 5AQYA 3M3ZA 4AAZA 4AEIA 3FZFA 5AQVA 2QW9A 1AYJA 2KBKA 3PSMA 1KAZA 2B3CA 2SN3A 4HHFA 5AQZA 2KJAA 2YEOA 3KHWA 1QQNA 2D56A 3KP1A 5AQQA 3QI7A 2N2RA 2QWQA 1CN2A 1OZZA 2E2FA 2QWOA 3QFPA 1SN4A 1B7DA 4UJ0A 3FZLA 1MYNA 2LJMA 1SNBA 1NGFA
chains in the Genus database with same CATH topology
3E7RL 2E3GA 1GPTA 1NRAA 1N4NA 1DJTA 1L4VA 1PTXA 1PE4A 1SNBA 2E3FA 5KK4A 1PX9A 1FH3A 1KV0A 1T7EA 2KSKA 4KYPA 4AB0A 1JKZA 1LQHA 1T1TA 1ICAA 1ZFUA 2E0HA 2LT8A 1B3CA 1SN1A 4HE7A 1NH5A 1NPIA 2LKBA 1P0AA 1NE5A 1ZU3A 2LR3A 1C56A 1T7BA 1ZYVA 1T7AA 1I6FA 2MZ0A 1BRZA 1C55A 2KPYA 2N69A 2NY9X 1GPSA 1SEGA 1WWNA 1LQIA 1T0ZA 1ZVGA 2KYQA 1WT7A 2N66A 2LY6A 2A7TA 1TI5A 1ZVEA 2LI7A 1VNBA 2KBHA 2LJ7A 2N2QA 1CHZA 1VNAA 1NRBA 1I2UA 2M8BB 2BRZA 1DQ7A 2NY8X 4V1DC 1BK8A 2GL1A 2LY5A 2ATBA 1OMYA 2KGQA 1JXCA 1I2VA 1I6GA 1LQQA 2YBRC 1JZBA 1JZAA 1WMTA 1ZYWA 3E7UX 1BMRA 1AHOA 1BCGA 1ZUTA 2I61A 1MR4A 2B68A 2YC1C 5CY0A 4CQKA 2ASCA 1P00A 4AAZA 4AEIA 1AYJA 2KBKA 3PSMA 2B3CA 2SN3A 4HHFA 2KJAA 2YEOA 2N2RA 1CN2A 1OZZA 1SN4A 1B7DA 4UJ0A 1MYNA 2LJMA 2KBJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E7R L;  2E3G A;  1GPT A;  1NRA A;  1N4N A;  1DJT A;  1L4V A;  1PTX A;  1PE4 A;  1SNB A;  2E3F A;  5KK4 A;  1PX9 A;  1FH3 A;  1KV0 A;  1T7E A;  2KSK A;  4KYP A;  4AB0 A;  1JKZ A;  1LQH A;  1T1T A;  1ICA A;  1ZFU A;  2E0H A;  2LT8 A;  1B3C A;  1SN1 A;  4HE7 A;  1NH5 A;  1NPI A;  2LKB A;  1P0A A;  1NE5 A;  1ZU3 A;  2LR3 A;  1C56 A;  1T7B A;  1ZYV A;  1T7A A;  1I6F A;  2MZ0 A;  1BRZ A;  1C55 A;  2KPY A;  2N69 A;  2NY9 X;  1GPS A;  1SEG A;  1WWN A;  1LQI A;  1T0Z A;  1ZVG A;  2KYQ A;  1WT7 A;  2N66 A;  2LY6 A;  2A7T A;  1TI5 A;  1ZVE A;  2LI7 A;  1VNB A;  2KBH A;  2LJ7 A;  2N2Q A;  1CHZ A;  1VNA A;  1NRB A;  1I2U A;  2M8B B;  2BRZ A;  1DQ7 A;  2NY8 X;  4V1D C;  1BK8 A;  2GL1 A;  2LY5 A;  2ATB A;  1OMY A;  2KGQ A;  1JXC A;  1I2V A;  1I6G A;  1LQQ A;  2YBR C;  1JZB A;  1JZA A;  1WMT A;  1ZYW A;  3E7U X;  1BMR A;  1AHO A;  1BCG A;  1ZUT A;  2I61 A;  1MR4 A;  2B68 A;  2YC1 C;  5CY0 A;  4CQK A;  2ASC A;  1P00 A;  4AAZ A;  4AEI A;  1AYJ A;  2KBK A;  3PSM A;  2B3C A;  2SN3 A;  4HHF A;  2KJA A;  2YEO A;  2N2R A;  1CN2 A;  1OZZ A;  1SN4 A;  1B7D A;  4UJ0 A;  1MYN A;  2LJM A;  2KBJ A; 
#chains in the Genus database with same CATH topology
 3E7R L;  3KOX A;  2E3G A;  1GPT A;  5FPE A;  1NRA A;  3GDQ A;  5F2R A;  3FZH A;  5AQH A;  3ATV A;  1UGL A;  1DJT A;  1N4N A;  1L4V A;  1PTX A;  1PE4 A;  4UAE F;  1ATR A;  2E3F A;  5KK4 A;  1PX9 A;  1FH3 A;  3LDQ A;  1KV0 A;  1T7E A;  5F1X A;  2KHO A;  1BA0 A;  4KBO A;  3LDP A;  4H5R A;  1NGA A;  2KSK A;  5EX5 A;  3CW4 A;  2YIP A;  2VY6 A;  4KYP A;  1LQH A;  4AB0 A;  1JKZ A;  1T1T A;  1ICA A;  3HSC A;  1ZFU A;  1NGJ A;  5AQP A;  2QWP A;  5AQF A;  4H5N A;  2E0H A;  2LT8 A;  2QWM A;  5AQO A;  1B3C A;  2YIO A;  3QML A;  3AY9 A;  4IO8 A;  1SN1 A;  4HE7 A;  2JDQ D;  3FZK A;  1NH5 A;  5AQU A;  1K8B A;  3KOZ A;  1NPI A;  2LKB A;  3LDO A;  1XRS B;  4H5T A;  1P0A A;  5BN8 A;  2QWR A;  1NE5 A;  1ZU3 A;  2LR3 A;  3R2V A;  1C56 A;  3JXU A;  4H5W A;  1T7B A;  3A8Y A;  3BK3 C;  3L6Q A;  1ZYV A;  2QWN A;  3D2F B;  1T7A A;  5FPD A;  1POI A;  3LDL A;  1I6F A;  2MZ0 A;  1BRZ A;  1NGC A;  1C55 A;  2KPY A;  3FZM A;  2N69 A;  3KC6 A;  5EY4 A;  2E88 A;  2NY9 X;  5AQR A;  1GPS A;  1SEG A;  5FPN A;  1WWN A;  5AQS A;  1LQI A;  3L56 A;  5BPN A;  1QQO A;  5AQG A;  3C7N B;  3KP0 A;  1T0Z A;  1ZVG A;  5EVZ A;  5AQX A;  3SF4 D;  1WT7 A;  1YUW A;  2KYQ A;  3QFU A;  5EXW A;  3C7N A;  2N66 A;  4HWI A;  3IUC A;  1KAX A;  2LY6 A;  2QWL A;  3KVG A;  2E8A A;  2A7T A;  2KBJ A;  1TI5 A;  1ZVE A;  2V7Z A;  5BPM A;  1NGD A;  2LI7 A;  1VNB A;  2KBH A;  1NGB A;  3CQX A;  2LJ7 A;  3KOW A;  2N2Q A;  1ATS A;  5BPL A;  5AQW A;  1NGI A;  1CHZ A;  1VNA A;  1NRB A;  3LDN A;  2BUP A;  2K35 A;  1I2U A;  5BN9 A;  2GMO A;  1S3X A;  2YIL A;  2M8B B;  1HX1 A;  2MBK A;  1BUP A;  3D2F A;  2BRZ A;  1DQ7 A;  1BA1 A;  5AR0 A;  2NY8 X;  4V1D C;  3D2E B;  1BK8 A;  1NGE A;  2GL1 A;  2QXL A;  3KOY A;  1HPM A;  3ATU A;  5AQN A;  2LY5 A;  2G2K A;  3FE1 A;  2ATB A;  4UAF E;  2LN8 A;  4UAD E;  4H5V A;  5AQI A;  1OMY A;  3D2E A;  3GKU A;  2KGQ A;  1JXC A;  4FSV A;  1KAY A;  1QQM A;  1I2V A;  2MN5 A;  3L4I A;  1LQQ A;  1I6G A;  5AQM A;  2YBR C;  1JZB A;  1HJO A;  1JZA A;  1WMT A;  1ZYW A;  3E7U X;  5F0X A;  4GNI A;  1BMR A;  1AHO A;  4FL9 A;  1NGH A;  1DKG D;  3I33 A;  5AQL A;  1BCG A;  1ZUT A;  3GL1 A;  1NGG A;  2I61 A;  1MR4 A;  5AQJ A;  5AQT A;  5AQK A;  2B68 A;  2YC1 C;  5FPM A;  4CQK A;  5CY0 A;  2ASC A;  1P00 A;  5AQY A;  3M3Z A;  4AAZ A;  4AEI A;  3FZF A;  5AQV A;  2QW9 A;  1AYJ A;  2KBK A;  3PSM A;  1KAZ A;  2B3C A;  2SN3 A;  4HHF A;  5AQZ A;  2KJA A;  2YEO A;  3KHW A;  1QQN A;  2D56 A;  3KP1 A;  5AQQ A;  3QI7 A;  2N2R A;  2QWQ A;  1CN2 A;  1OZZ A;  2E2F A;  2QWO A;  3QFP A;  1SN4 A;  1B7D A;  4UJ0 A;  3FZL A;  1MYN A;  2LJM A;  1SNB A;  1NGF A; 
#chains in the Genus database with same CATH homology
 3E7R L;  2E3G A;  1GPT A;  1NRA A;  1N4N A;  1DJT A;  1L4V A;  1PTX A;  1PE4 A;  1SNB A;  2E3F A;  5KK4 A;  1PX9 A;  1FH3 A;  1KV0 A;  1T7E A;  2KSK A;  4KYP A;  4AB0 A;  1JKZ A;  1LQH A;  1T1T A;  1ICA A;  1ZFU A;  2E0H A;  2LT8 A;  1B3C A;  1SN1 A;  4HE7 A;  1NH5 A;  1NPI A;  2LKB A;  1P0A A;  1NE5 A;  1ZU3 A;  2LR3 A;  1C56 A;  1T7B A;  1ZYV A;  1T7A A;  1I6F A;  2MZ0 A;  1BRZ A;  1C55 A;  2KPY A;  2N69 A;  2NY9 X;  1GPS A;  1SEG A;  1WWN A;  1LQI A;  1T0Z A;  1ZVG A;  2KYQ A;  1WT7 A;  2N66 A;  2LY6 A;  2A7T A;  1TI5 A;  1ZVE A;  2LI7 A;  1VNB A;  2KBH A;  2LJ7 A;  2N2Q A;  1CHZ A;  1VNA A;  1NRB A;  1I2U A;  2M8B B;  2BRZ A;  1DQ7 A;  2NY8 X;  4V1D C;  1BK8 A;  2GL1 A;  2LY5 A;  2ATB A;  1OMY A;  2KGQ A;  1JXC A;  1I2V A;  1I6G A;  1LQQ A;  2YBR C;  1JZB A;  1JZA A;  1WMT A;  1ZYW A;  3E7U X;  1BMR A;  1AHO A;  1BCG A;  1ZUT A;  2I61 A;  1MR4 A;  2B68 A;  2YC1 C;  5CY0 A;  4CQK A;  2ASC A;  1P00 A;  4AAZ A;  4AEI A;  1AYJ A;  2KBK A;  3PSM A;  2B3C A;  2SN3 A;  4HHF A;  2KJA A;  2YEO A;  2N2R A;  1CN2 A;  1OZZ A;  1SN4 A;  1B7D A;  4UJ0 A;  1MYN A;  2LJM A;  2KBJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...