4AAZA

X-ray structure of nicotiana alata defensin 1 nad1
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
molecule tags Antimicrobial protein
molecule keywords FLOWER-SPECIFIC DEFENSIN
total genus 13
structure length 47
sequence length 47
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4aazA00
1I6FA 3PSMA 1KV0A 1T7BA 1ZYWA 2KSKA 2KBKA 1SN4A 1SNBA 1LQQA 1AYJA 1NRBA 1ZU3A 2N66A 2M8BB 1ZYVA 1NH5A 2KJAA 1DQ7A 1I2VA 2SN3A 2N69A 2LR3A 1PTXA 1CN2A 1T7EA 1BK8A 1JZAA 2E0HA 2MZ0A 1CHZA 1BRZA 1ZVGA 4HE7A 2LJ7A 1OZZA 4V1DC 1ZUTA 1N4NA 1LQHA 2LI7A 1JZBA 4CQKA 1C55A 2LT8A 4AB0A 1WT7A 1OMYA 2LJMA 4HHFA 2KBJA 1DJTA 1PX9A 4KYPA 2LY5A 1TI5A 1GPSA 1LQIA 2KGQA 1PE4A 5KK4A 2NY8X 2LKBA 2ATBA 1JKZA 3E7RL 1NPIA 1I6GA 4AEIA 1VNBA 4AAZA 1GPTA 2LY6A 2A7TA 1P00A 2B3CA 1P0AA 2N2QA 1T0ZA 2KBHA 2I61A 1I2UA 1ICAA 1MR4A 5CY0A 2KPYA 1MYNA 1NE5A 2NY9X 3E7UX 1JXCA 1L4VA 1SN1A 2YBRC 1AHOA 1FH3A 2YEOA 2YC1C 4UJ0A 2E3FA 1BCGA 2ASCA 1BMRA 1WWNA 1SEGA 1VNAA 1T7AA 2N2RA 1ZVEA 1B3CA 1ZFUA 2BRZA 2GL1A 1T1TA 1B7DA 2B68A 2E3GA 2KYQA 1NRAA 1WMTA 1C56A
chains in the Genus database with same CATH superfamily
1I6FA 3PSMA 2LN8A 1KV0A 1T7BA 1GPSA 3ATUA 5AQYA 5AQSA 1ZYWA 2KSKA 5AQWA 4H5NA 5F2RA 1QQNA 2KBKA 5AQNA 3QFPA 1SN4A 1SNBA 3A8YA 4UADE 1LQQA 2E8AA 2QXLA 5AQOA 1AYJA 1NRBA 1ZU3A 3KOWA 3GDQA 3SF4D 2N66A 1KAZA 3KP1A 1NGCA 1NGFA 3KVGA 2M8BB 1ZYVA 5FPNA 1NH5A 2MN5A 1QQMA 2KJAA 1BA1A 3KP0A 4UAEF 1DQ7A 3CQXA 1NGEA 3L56A 1UGLA 1I2VA 1NGGA 1NGDA 2SN3A 2N69A 2LR3A 5AR0A 1NGHA 4KBOA 1PTXA 1CN2A 1T7EA 5FPEA 1BK8A 2E88A 3FZFA 1NGBA 3R2VA 2YIPA 1KAXA 5BPNA 5AQRA 1JZAA 2E0HA 2MZ0A 3FZHA 1HJOA 5EX5A 1S3XA 1CHZA 1BRZA 1ZVGA 4HE7A 2QWOA 3ATVA 5BPMA 5BN9A 2LJ7A 4GNIA 1OZZA 4FL9A 5AQLA 4V1DC 1ZUTA 5AQIA 1N4NA 1LQHA 2JDQD 2KHOA 3D2EB 5AQVA 2LI7A 5AQXA 1JZBA 2QWMA 2QWPA 2E2FA 4CQKA 3KOXA 1C55A 2LT8A 3GKUA 3L4IA 4AB0A 1WT7A 1POIA 2V7ZA 1OMYA 3D2EA 5AQGA 3L6QA 2LJMA 3JXUA 3QFUA 2KBJA 4HHFA 1DJTA 1PX9A 4KYPA 2LY5A 1NGIA 1TI5A 1LQIA 2KGQA 3FZMA 3HSCA 1PE4A 3QMLA 5KK4A 2NY8X 2LKBA 2D56A 2ATBA 1JKZA 5EVZA 1ATRA 3FZLA 1NGAA 3E7RL 1NPIA 1I6GA 5BN8A 2YIOA 4AEIA 1YUWA 1VNBA 4H5RA 2GMOA 5F1XA 1QQOA 4AAZA 1GPTA 5F0XA 3LDOA 2LY6A 1BA0A 4HWIA 2A7TA 3C7NB 3IUCA 5EY4A 1P00A 2YILA 5AQZA 5AQHA 5BPLA 3KOYA 2B3CA 2K35A 2QW9A 1P0AA 4FSVA 2N2QA 1T0ZA 2KBHA 2I61A 1I2UA 3LDQA 2G2KA 3C7NA 3GL1A 5AQPA 1HPMA 1ICAA 1HX1A 1MR4A 2BUPA 3CW4A 4H5WA 5CY0A 2KPYA 3D2FB 5FPDA 5FPMA 1MYNA 1NE5A 2NY9X 3KC6A 2QWNA 3E7UX 2MBKA 3KHWA 1JXCA 1L4VA 1SN1A 2YBRC 3I33A 1NGJA 3D2FA 5AQTA 1ATSA 3FZKA 5AQKA 3AY9A 4H5TA 1AHOA 3BK3C 5EXWA 1BUPA 5AQJA 4H5VA 1K8BA 1FH3A 3LDLA 2YEOA 2QWQA 2YC1C 5AQFA 4UJ0A 2QWRA 1KAYA 1BCGA 2E3FA 5AQUA 1XRSB 3M3ZA 2ASCA 4UAFE 3KOZA 1WWNA 1SEGA 5AQQA 1BMRA 1VNAA 1T7AA 2N2RA 1ZVEA 2VY6A 3FE1A 1B3CA 1ZFUA 2BRZA 2GL1A 3QI7A 1DKGD 1B7DA 1T1TA 2QWLA 2B68A 2E3GA 3LDPA 2KYQA 1NRAA 1WMTA 3LDNA 4IO8A 5AQMA 1C56A
chains in the Genus database with same CATH topology
1I6FA 3PSMA 1KV0A 1T7BA 1ZYWA 2KSKA 2KBKA 1SN4A 1SNBA 1LQQA 1AYJA 1NRBA 1ZU3A 2N66A 2M8BB 1ZYVA 1NH5A 2KJAA 1DQ7A 1I2VA 2SN3A 2N69A 2LR3A 1PTXA 1CN2A 1T7EA 1BK8A 1JZAA 2E0HA 2MZ0A 1CHZA 1BRZA 1ZVGA 4HE7A 2LJ7A 1OZZA 4V1DC 1ZUTA 1N4NA 1LQHA 2LI7A 1JZBA 4CQKA 1C55A 2LT8A 4AB0A 1WT7A 1OMYA 2LJMA 4HHFA 2KBJA 1DJTA 1PX9A 4KYPA 2LY5A 1TI5A 1GPSA 1LQIA 2KGQA 1PE4A 5KK4A 2NY8X 2LKBA 2ATBA 1JKZA 3E7RL 1NPIA 1I6GA 4AEIA 1VNBA 4AAZA 1GPTA 2LY6A 2A7TA 1P00A 2B3CA 1P0AA 2N2QA 1T0ZA 2KBHA 2I61A 1I2UA 1ICAA 1MR4A 5CY0A 2KPYA 1MYNA 1NE5A 2NY9X 3E7UX 1JXCA 1L4VA 1SN1A 2YBRC 1AHOA 1FH3A 2YEOA 2YC1C 4UJ0A 2E3FA 1BCGA 2ASCA 1BMRA 1WWNA 1SEGA 1VNAA 1T7AA 2N2RA 1ZVEA 1B3CA 1ZFUA 2BRZA 2GL1A 1T1TA 1B7DA 2B68A 2E3GA 2KYQA 1NRAA 1WMTA 1C56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I6F A;  3PSM A;  1KV0 A;  1T7B A;  1ZYW A;  2KSK A;  2KBK A;  1SN4 A;  1SNB A;  1LQQ A;  1AYJ A;  1NRB A;  1ZU3 A;  2N66 A;  2M8B B;  1ZYV A;  1NH5 A;  2KJA A;  1DQ7 A;  1I2V A;  2SN3 A;  2N69 A;  2LR3 A;  1PTX A;  1CN2 A;  1T7E A;  1BK8 A;  1JZA A;  2E0H A;  2MZ0 A;  1CHZ A;  1BRZ A;  1ZVG A;  4HE7 A;  2LJ7 A;  1OZZ A;  4V1D C;  1ZUT A;  1N4N A;  1LQH A;  2LI7 A;  1JZB A;  4CQK A;  1C55 A;  2LT8 A;  4AB0 A;  1WT7 A;  1OMY A;  2LJM A;  4HHF A;  2KBJ A;  1DJT A;  1PX9 A;  4KYP A;  2LY5 A;  1TI5 A;  1GPS A;  1LQI A;  2KGQ A;  1PE4 A;  5KK4 A;  2NY8 X;  2LKB A;  2ATB A;  1JKZ A;  3E7R L;  1NPI A;  1I6G A;  4AEI A;  1VNB A;  4AAZ A;  1GPT A;  2LY6 A;  2A7T A;  1P00 A;  2B3C A;  1P0A A;  2N2Q A;  1T0Z A;  2KBH A;  2I61 A;  1I2U A;  1ICA A;  1MR4 A;  5CY0 A;  2KPY A;  1MYN A;  1NE5 A;  2NY9 X;  3E7U X;  1JXC A;  1L4V A;  1SN1 A;  2YBR C;  1AHO A;  1FH3 A;  2YEO A;  2YC1 C;  4UJ0 A;  2E3F A;  1BCG A;  2ASC A;  1BMR A;  1WWN A;  1SEG A;  1VNA A;  1T7A A;  2N2R A;  1ZVE A;  1B3C A;  1ZFU A;  2BRZ A;  2GL1 A;  1T1T A;  1B7D A;  2B68 A;  2E3G A;  2KYQ A;  1NRA A;  1WMT A;  1C56 A; 
#chains in the Genus database with same CATH topology
 1I6F A;  3PSM A;  2LN8 A;  1KV0 A;  1T7B A;  1GPS A;  3ATU A;  5AQY A;  5AQS A;  1ZYW A;  2KSK A;  5AQW A;  4H5N A;  5F2R A;  1QQN A;  2KBK A;  5AQN A;  3QFP A;  1SN4 A;  1SNB A;  3A8Y A;  4UAD E;  1LQQ A;  2E8A A;  2QXL A;  5AQO A;  1AYJ A;  1NRB A;  1ZU3 A;  3KOW A;  3GDQ A;  3SF4 D;  2N66 A;  1KAZ A;  3KP1 A;  1NGC A;  1NGF A;  3KVG A;  2M8B B;  1ZYV A;  5FPN A;  1NH5 A;  2MN5 A;  1QQM A;  2KJA A;  1BA1 A;  3KP0 A;  4UAE F;  1DQ7 A;  3CQX A;  1NGE A;  3L56 A;  1UGL A;  1I2V A;  1NGG A;  1NGD A;  2SN3 A;  2N69 A;  2LR3 A;  5AR0 A;  1NGH A;  4KBO A;  1PTX A;  1CN2 A;  1T7E A;  5FPE A;  1BK8 A;  2E88 A;  3FZF A;  1NGB A;  3R2V A;  2YIP A;  1KAX A;  5BPN A;  5AQR A;  1JZA A;  2E0H A;  2MZ0 A;  3FZH A;  1HJO A;  5EX5 A;  1S3X A;  1CHZ A;  1BRZ A;  1ZVG A;  4HE7 A;  2QWO A;  3ATV A;  5BPM A;  5BN9 A;  2LJ7 A;  4GNI A;  1OZZ A;  4FL9 A;  5AQL A;  4V1D C;  1ZUT A;  5AQI A;  1N4N A;  1LQH A;  2JDQ D;  2KHO A;  3D2E B;  5AQV A;  2LI7 A;  5AQX A;  1JZB A;  2QWM A;  2QWP A;  2E2F A;  4CQK A;  3KOX A;  1C55 A;  2LT8 A;  3GKU A;  3L4I A;  4AB0 A;  1WT7 A;  1POI A;  2V7Z A;  1OMY A;  3D2E A;  5AQG A;  3L6Q A;  2LJM A;  3JXU A;  3QFU A;  2KBJ A;  4HHF A;  1DJT A;  1PX9 A;  4KYP A;  2LY5 A;  1NGI A;  1TI5 A;  1LQI A;  2KGQ A;  3FZM A;  3HSC A;  1PE4 A;  3QML A;  5KK4 A;  2NY8 X;  2LKB A;  2D56 A;  2ATB A;  1JKZ A;  5EVZ A;  1ATR A;  3FZL A;  1NGA A;  3E7R L;  1NPI A;  1I6G A;  5BN8 A;  2YIO A;  4AEI A;  1YUW A;  1VNB A;  4H5R A;  2GMO A;  5F1X A;  1QQO A;  4AAZ A;  1GPT A;  5F0X A;  3LDO A;  2LY6 A;  1BA0 A;  4HWI A;  2A7T A;  3C7N B;  3IUC A;  5EY4 A;  1P00 A;  2YIL A;  5AQZ A;  5AQH A;  5BPL A;  3KOY A;  2B3C A;  2K35 A;  2QW9 A;  1P0A A;  4FSV A;  2N2Q A;  1T0Z A;  2KBH A;  2I61 A;  1I2U A;  3LDQ A;  2G2K A;  3C7N A;  3GL1 A;  5AQP A;  1HPM A;  1ICA A;  1HX1 A;  1MR4 A;  2BUP A;  3CW4 A;  4H5W A;  5CY0 A;  2KPY A;  3D2F B;  5FPD A;  5FPM A;  1MYN A;  1NE5 A;  2NY9 X;  3KC6 A;  2QWN A;  3E7U X;  2MBK A;  3KHW A;  1JXC A;  1L4V A;  1SN1 A;  2YBR C;  3I33 A;  1NGJ A;  3D2F A;  5AQT A;  1ATS A;  3FZK A;  5AQK A;  3AY9 A;  4H5T A;  1AHO A;  3BK3 C;  5EXW A;  1BUP A;  5AQJ A;  4H5V A;  1K8B A;  1FH3 A;  3LDL A;  2YEO A;  2QWQ A;  2YC1 C;  5AQF A;  4UJ0 A;  2QWR A;  1KAY A;  1BCG A;  2E3F A;  5AQU A;  1XRS B;  3M3Z A;  2ASC A;  4UAF E;  3KOZ A;  1WWN A;  1SEG A;  5AQQ A;  1BMR A;  1VNA A;  1T7A A;  2N2R A;  1ZVE A;  2VY6 A;  3FE1 A;  1B3C A;  1ZFU A;  2BRZ A;  2GL1 A;  3QI7 A;  1DKG D;  1B7D A;  1T1T A;  2QWL A;  2B68 A;  2E3G A;  3LDP A;  2KYQ A;  1NRA A;  1WMT A;  3LDN A;  4IO8 A;  5AQM A;  1C56 A; 
#chains in the Genus database with same CATH homology
 1I6F A;  3PSM A;  1KV0 A;  1T7B A;  1ZYW A;  2KSK A;  2KBK A;  1SN4 A;  1SNB A;  1LQQ A;  1AYJ A;  1NRB A;  1ZU3 A;  2N66 A;  2M8B B;  1ZYV A;  1NH5 A;  2KJA A;  1DQ7 A;  1I2V A;  2SN3 A;  2N69 A;  2LR3 A;  1PTX A;  1CN2 A;  1T7E A;  1BK8 A;  1JZA A;  2E0H A;  2MZ0 A;  1CHZ A;  1BRZ A;  1ZVG A;  4HE7 A;  2LJ7 A;  1OZZ A;  4V1D C;  1ZUT A;  1N4N A;  1LQH A;  2LI7 A;  1JZB A;  4CQK A;  1C55 A;  2LT8 A;  4AB0 A;  1WT7 A;  1OMY A;  2LJM A;  4HHF A;  2KBJ A;  1DJT A;  1PX9 A;  4KYP A;  2LY5 A;  1TI5 A;  1GPS A;  1LQI A;  2KGQ A;  1PE4 A;  5KK4 A;  2NY8 X;  2LKB A;  2ATB A;  1JKZ A;  3E7R L;  1NPI A;  1I6G A;  4AEI A;  1VNB A;  4AAZ A;  1GPT A;  2LY6 A;  2A7T A;  1P00 A;  2B3C A;  1P0A A;  2N2Q A;  1T0Z A;  2KBH A;  2I61 A;  1I2U A;  1ICA A;  1MR4 A;  5CY0 A;  2KPY A;  1MYN A;  1NE5 A;  2NY9 X;  3E7U X;  1JXC A;  1L4V A;  1SN1 A;  2YBR C;  1AHO A;  1FH3 A;  2YEO A;  2YC1 C;  4UJ0 A;  2E3F A;  1BCG A;  2ASC A;  1BMR A;  1WWN A;  1SEG A;  1VNA A;  1T7A A;  2N2R A;  1ZVE A;  1B3C A;  1ZFU A;  2BRZ A;  2GL1 A;  1T1T A;  1B7D A;  2B68 A;  2E3G A;  2KYQ A;  1NRA A;  1WMT A;  1C56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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