4AB0A

X-ray crystal structure of nicotiana alata defensin nad1
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
46
structure length
46
Chain Sequence
ECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-6)S3 (41-45)TI1 (7-10)AH1 (17-27)EMPTYTIV1 (35-38)S2 (31-34)TIV2 (36-39)Updating...
connected with : NaN
molecule tags Antimicrobial protein
publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
molecule keywords FLOWER-SPECIFIC DEFENSIN
total genus 11
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4ab0A00
2E0HA 1JZAA 2KBHA 4UJ0A 1MR4A 1P00A 2N69A 1T7BA 1AHOA 2A7TA 2KBJA 1DJTA 1NRAA 1TI5A 1ZFUA 1GPSA 2KPYA 4KYPA 1DQ7A 3E7UX 1BMRA 1WWNA 1NPIA 1NH5A 1B7DA 1LQIA 1LQHA 1I2UA 1WT7A 1CHZA 2LKBA 2N66A 2M8BB 2MZ0A 2LY5A 1PE4A 2NY9X 3PSMA 1WMTA 1GPTA 1T7EA 2KJAA 1P0AA 1JXCA 1NE5A 1BK8A 1ZUTA 2B3CA 4CQKA 5KK4A 1L4VA 1I2VA 1OMYA 1SNBA 2YEOA 1JZBA 2KBKA 4AAZA 4HE7A 1C55A 1SEGA 1MYNA 2E3FA 1AYJA 2N2QA 1PX9A 1I6FA 2B68A 1ZVGA 2LY6A 2LI7A 2ASCA 1CN2A 2KGQA 1JKZA 2E3GA 2BRZA 2ATBA 1ZVEA 1OZZA 1SN1A 1VNBA 1T0ZA 1BRZA 2LJMA 1ZYWA 2I61A 1ZYVA 1VNAA 1C56A 1SN4A 1ZU3A 2KYQA 4HHFA 1NRBA 1PTXA 4AB0A 4AEIA 2N2RA 4V1DC 2SN3A 1FH3A 2YC1C 5CY0A 2GL1A 1T7AA 2NY8X 2LR3A 1KV0A 1I6GA 1T1TA 1LQQA 2YBRC 1B3CA 2LJ7A 2KSKA 2LT8A 1BCGA 1N4NA 3E7RL 1ICAA
chains in the Genus database with same CATH superfamily
2E0HA 1JZAA 2KBHA 3L56A 4UAEF 4UJ0A 1KAXA 1MR4A 1P00A 3CQXA 2MBKA 3FZLA 5AQKA 2N69A 5AQJA 3KHWA 5AQRA 1QQMA 5BN8A 5FPDA 1KAZA 2GMOA 1T7BA 5AQLA 1AHOA 2A7TA 2KBJA 1DJTA 4GNIA 2QWRA 3AY9A 4H5NA 5FPMA 1UGLA 5AQMA 5AQFA 4KBOA 3KOXA 1NRAA 1TI5A 1ZFUA 3KP1A 1GPSA 2KPYA 4KYPA 5AQTA 1DQ7A 3E7UX 3LDLA 1BMRA 5AQHA 1WWNA 1NPIA 5EX5A 1NH5A 3JXUA 3QI7A 2V7ZA 4H5RA 1NGGA 1NGDA 3LDNA 1B7DA 1LQIA 5AQQA 1LQHA 3GL1A 3C7NB 5AQSA 2E88A 3KC6A 1ATRA 1I2UA 1WT7A 2E8AA 1CHZA 2LKBA 2N66A 3LDOA 2QWOA 1NGAA 2M8BB 2MZ0A 3SF4D 2K35A 1XRSB 2LY5A 5BPMA 3I33A 1PE4A 3C7NA 5AQVA 2NY9X 1NGEA 3PSMA 1WMTA 3ATUA 1NGJA 1GPTA 1T7EA 1DKGD 1BA0A 2QW9A 2QXLA 3KOZA 2KJAA 1P0AA 1JXCA 5BN9A 1NE5A 4UAFE 1BK8A 1ZUTA 2B3CA 4CQKA 3CW4A 5KK4A 2YIPA 5AR0A 1OMYA 1I2VA 1L4VA 1NGCA 5EY4A 1SNBA 2QWQA 2YEOA 1JZBA 2KBKA 3GDQA 5AQWA 4AAZA 4HE7A 5EXWA 1SEGA 1MYNA 1C55A 3FZKA 2E3FA 3M3ZA 2G2KA 1NGHA 3LDPA 1AYJA 3QFUA 1NGIA 5AQPA 5F2RA 2N2QA 3L6QA 1PX9A 1KAYA 1I6FA 2B68A 1ZVGA 2LY6A 2LI7A 3D2EA 5AQUA 2ASCA 1QQNA 1CN2A 3QMLA 4FSVA 5BPNA 1NGBA 1HJOA 3KOYA 2KGQA 1K8BA 1JKZA 5AQIA 2E3GA 2BRZA 2ATBA 4IO8A 1ZVEA 2MN5A 3LDQA 1OZZA 4HWIA 5F0XA 5AQZA 1HPMA 2BUPA 5FPEA 1POIA 3GKUA 1SN1A 1S3XA 1T0ZA 1VNBA 2QWLA 2VY6A 2YILA 4FL9A 4H5WA 3D2FB 4H5VA 2LJMA 1BRZA 1ZYWA 2I61A 2KHOA 3D2EB 5F1XA 1ZYVA 3IUCA 1VNAA 3KP0A 2JDQD 2LN8A 3KOWA 3QFPA 5BPLA 1C56A 1BUPA 1SN4A 3FZHA 1ZU3A 2KYQA 2QWMA 3FE1A 3R2VA 4HHFA 1NRBA 5FPNA 3D2FA 5AQXA 3FZFA 5AQOA 1PTXA 2YIOA 4AB0A 1QQOA 1YUWA 1HX1A 4AEIA 3A8YA 5EVZA 2N2RA 4H5TA 2E2FA 3FZMA 4V1DC 2SN3A 2QWNA 2YC1C 1FH3A 3HSCA 5CY0A 1BA1A 2GL1A 1T7AA 1NGFA 5AQNA 5AQGA 2NY8X 3L4IA 1ATSA 2LR3A 1KV0A 1I6GA 1T1TA 2D56A 1LQQA 2YBRC 4UADE 2LJ7A 1B3CA 2KSKA 2LT8A 1BCGA 1N4NA 3BK3C 3KVGA 5AQYA 2QWPA 3ATVA 3E7RL 1ICAA
chains in the Genus database with same CATH topology
2E0HA 1JZAA 2KBHA 4UJ0A 1MR4A 1P00A 2N69A 1T7BA 1AHOA 2A7TA 2KBJA 1DJTA 1NRAA 1TI5A 1ZFUA 1GPSA 2KPYA 4KYPA 1DQ7A 3E7UX 1BMRA 1WWNA 1NPIA 1NH5A 1B7DA 1LQIA 1LQHA 1I2UA 1WT7A 1CHZA 2LKBA 2N66A 2M8BB 2MZ0A 2LY5A 1PE4A 2NY9X 3PSMA 1WMTA 1GPTA 1T7EA 2KJAA 1P0AA 1JXCA 1NE5A 1BK8A 1ZUTA 2B3CA 4CQKA 5KK4A 1L4VA 1I2VA 1OMYA 1SNBA 2YEOA 1JZBA 2KBKA 4AAZA 4HE7A 1C55A 1SEGA 1MYNA 2E3FA 1AYJA 2N2QA 1PX9A 1I6FA 2B68A 1ZVGA 2LY6A 2LI7A 2ASCA 1CN2A 2KGQA 1JKZA 2E3GA 2BRZA 2ATBA 1ZVEA 1OZZA 1SN1A 1VNBA 1T0ZA 1BRZA 2LJMA 1ZYWA 2I61A 1ZYVA 1VNAA 1C56A 1SN4A 1ZU3A 2KYQA 4HHFA 1NRBA 1PTXA 4AB0A 4AEIA 2N2RA 4V1DC 2SN3A 1FH3A 2YC1C 5CY0A 2GL1A 1T7AA 2NY8X 2LR3A 1KV0A 1I6GA 1T1TA 1LQQA 2YBRC 1B3CA 2LJ7A 2KSKA 2LT8A 1BCGA 1N4NA 3E7RL 1ICAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E0H A;  1JZA A;  2KBH A;  4UJ0 A;  1MR4 A;  1P00 A;  2N69 A;  1T7B A;  1AHO A;  2A7T A;  2KBJ A;  1DJT A;  1NRA A;  1TI5 A;  1ZFU A;  1GPS A;  2KPY A;  4KYP A;  1DQ7 A;  3E7U X;  1BMR A;  1WWN A;  1NPI A;  1NH5 A;  1B7D A;  1LQI A;  1LQH A;  1I2U A;  1WT7 A;  1CHZ A;  2LKB A;  2N66 A;  2M8B B;  2MZ0 A;  2LY5 A;  1PE4 A;  2NY9 X;  3PSM A;  1WMT A;  1GPT A;  1T7E A;  2KJA A;  1P0A A;  1JXC A;  1NE5 A;  1BK8 A;  1ZUT A;  2B3C A;  4CQK A;  5KK4 A;  1L4V A;  1I2V A;  1OMY A;  1SNB A;  2YEO A;  1JZB A;  2KBK A;  4AAZ A;  4HE7 A;  1C55 A;  1SEG A;  1MYN A;  2E3F A;  1AYJ A;  2N2Q A;  1PX9 A;  1I6F A;  2B68 A;  1ZVG A;  2LY6 A;  2LI7 A;  2ASC A;  1CN2 A;  2KGQ A;  1JKZ A;  2E3G A;  2BRZ A;  2ATB A;  1ZVE A;  1OZZ A;  1SN1 A;  1VNB A;  1T0Z A;  1BRZ A;  2LJM A;  1ZYW A;  2I61 A;  1ZYV A;  1VNA A;  1C56 A;  1SN4 A;  1ZU3 A;  2KYQ A;  4HHF A;  1NRB A;  1PTX A;  4AB0 A;  4AEI A;  2N2R A;  4V1D C;  2SN3 A;  1FH3 A;  2YC1 C;  5CY0 A;  2GL1 A;  1T7A A;  2NY8 X;  2LR3 A;  1KV0 A;  1I6G A;  1T1T A;  1LQQ A;  2YBR C;  1B3C A;  2LJ7 A;  2KSK A;  2LT8 A;  1BCG A;  1N4N A;  3E7R L;  1ICA A; 
#chains in the Genus database with same CATH topology
 2E0H A;  1JZA A;  2KBH A;  3L56 A;  4UAE F;  4UJ0 A;  1KAX A;  1MR4 A;  1P00 A;  3CQX A;  2MBK A;  3FZL A;  5AQK A;  2N69 A;  5AQJ A;  3KHW A;  5AQR A;  1QQM A;  5BN8 A;  5FPD A;  1KAZ A;  2GMO A;  1T7B A;  5AQL A;  1AHO A;  2A7T A;  2KBJ A;  1DJT A;  4GNI A;  2QWR A;  3AY9 A;  4H5N A;  5FPM A;  1UGL A;  5AQM A;  5AQF A;  4KBO A;  3KOX A;  1NRA A;  1TI5 A;  1ZFU A;  3KP1 A;  1GPS A;  2KPY A;  4KYP A;  5AQT A;  1DQ7 A;  3E7U X;  3LDL A;  1BMR A;  5AQH A;  1WWN A;  1NPI A;  5EX5 A;  1NH5 A;  3JXU A;  3QI7 A;  2V7Z A;  4H5R A;  1NGG A;  1NGD A;  3LDN A;  1B7D A;  1LQI A;  5AQQ A;  1LQH A;  3GL1 A;  3C7N B;  5AQS A;  2E88 A;  3KC6 A;  1ATR A;  1I2U A;  1WT7 A;  2E8A A;  1CHZ A;  2LKB A;  2N66 A;  3LDO A;  2QWO A;  1NGA A;  2M8B B;  2MZ0 A;  3SF4 D;  2K35 A;  1XRS B;  2LY5 A;  5BPM A;  3I33 A;  1PE4 A;  3C7N A;  5AQV A;  2NY9 X;  1NGE A;  3PSM A;  1WMT A;  3ATU A;  1NGJ A;  1GPT A;  1T7E A;  1DKG D;  1BA0 A;  2QW9 A;  2QXL A;  3KOZ A;  2KJA A;  1P0A A;  1JXC A;  5BN9 A;  1NE5 A;  4UAF E;  1BK8 A;  1ZUT A;  2B3C A;  4CQK A;  3CW4 A;  5KK4 A;  2YIP A;  5AR0 A;  1OMY A;  1I2V A;  1L4V A;  1NGC A;  5EY4 A;  1SNB A;  2QWQ A;  2YEO A;  1JZB A;  2KBK A;  3GDQ A;  5AQW A;  4AAZ A;  4HE7 A;  5EXW A;  1SEG A;  1MYN A;  1C55 A;  3FZK A;  2E3F A;  3M3Z A;  2G2K A;  1NGH A;  3LDP A;  1AYJ A;  3QFU A;  1NGI A;  5AQP A;  5F2R A;  2N2Q A;  3L6Q A;  1PX9 A;  1KAY A;  1I6F A;  2B68 A;  1ZVG A;  2LY6 A;  2LI7 A;  3D2E A;  5AQU A;  2ASC A;  1QQN A;  1CN2 A;  3QML A;  4FSV A;  5BPN A;  1NGB A;  1HJO A;  3KOY A;  2KGQ A;  1K8B A;  1JKZ A;  5AQI A;  2E3G A;  2BRZ A;  2ATB A;  4IO8 A;  1ZVE A;  2MN5 A;  3LDQ A;  1OZZ A;  4HWI A;  5F0X A;  5AQZ A;  1HPM A;  2BUP A;  5FPE A;  1POI A;  3GKU A;  1SN1 A;  1S3X A;  1T0Z A;  1VNB A;  2QWL A;  2VY6 A;  2YIL A;  4FL9 A;  4H5W A;  3D2F B;  4H5V A;  2LJM A;  1BRZ A;  1ZYW A;  2I61 A;  2KHO A;  3D2E B;  5F1X A;  1ZYV A;  3IUC A;  1VNA A;  3KP0 A;  2JDQ D;  2LN8 A;  3KOW A;  3QFP A;  5BPL A;  1C56 A;  1BUP A;  1SN4 A;  3FZH A;  1ZU3 A;  2KYQ A;  2QWM A;  3FE1 A;  3R2V A;  4HHF A;  1NRB A;  5FPN A;  3D2F A;  5AQX A;  3FZF A;  5AQO A;  1PTX A;  2YIO A;  4AB0 A;  1QQO A;  1YUW A;  1HX1 A;  4AEI A;  3A8Y A;  5EVZ A;  2N2R A;  4H5T A;  2E2F A;  3FZM A;  4V1D C;  2SN3 A;  2QWN A;  2YC1 C;  1FH3 A;  3HSC A;  5CY0 A;  1BA1 A;  2GL1 A;  1T7A A;  1NGF A;  5AQN A;  5AQG A;  2NY8 X;  3L4I A;  1ATS A;  2LR3 A;  1KV0 A;  1I6G A;  1T1T A;  2D56 A;  1LQQ A;  2YBR C;  4UAD E;  2LJ7 A;  1B3C A;  2KSK A;  2LT8 A;  1BCG A;  1N4N A;  3BK3 C;  3KVG A;  5AQY A;  2QWP A;  3ATV A;  3E7R L;  1ICA A; 
#chains in the Genus database with same CATH homology
 2E0H A;  1JZA A;  2KBH A;  4UJ0 A;  1MR4 A;  1P00 A;  2N69 A;  1T7B A;  1AHO A;  2A7T A;  2KBJ A;  1DJT A;  1NRA A;  1TI5 A;  1ZFU A;  1GPS A;  2KPY A;  4KYP A;  1DQ7 A;  3E7U X;  1BMR A;  1WWN A;  1NPI A;  1NH5 A;  1B7D A;  1LQI A;  1LQH A;  1I2U A;  1WT7 A;  1CHZ A;  2LKB A;  2N66 A;  2M8B B;  2MZ0 A;  2LY5 A;  1PE4 A;  2NY9 X;  3PSM A;  1WMT A;  1GPT A;  1T7E A;  2KJA A;  1P0A A;  1JXC A;  1NE5 A;  1BK8 A;  1ZUT A;  2B3C A;  4CQK A;  5KK4 A;  1L4V A;  1I2V A;  1OMY A;  1SNB A;  2YEO A;  1JZB A;  2KBK A;  4AAZ A;  4HE7 A;  1C55 A;  1SEG A;  1MYN A;  2E3F A;  1AYJ A;  2N2Q A;  1PX9 A;  1I6F A;  2B68 A;  1ZVG A;  2LY6 A;  2LI7 A;  2ASC A;  1CN2 A;  2KGQ A;  1JKZ A;  2E3G A;  2BRZ A;  2ATB A;  1ZVE A;  1OZZ A;  1SN1 A;  1VNB A;  1T0Z A;  1BRZ A;  2LJM A;  1ZYW A;  2I61 A;  1ZYV A;  1VNA A;  1C56 A;  1SN4 A;  1ZU3 A;  2KYQ A;  4HHF A;  1NRB A;  1PTX A;  4AB0 A;  4AEI A;  2N2R A;  4V1D C;  2SN3 A;  1FH3 A;  2YC1 C;  5CY0 A;  2GL1 A;  1T7A A;  2NY8 X;  2LR3 A;  1KV0 A;  1I6G A;  1T1T A;  1LQQ A;  2YBR C;  1B3C A;  2LJ7 A;  2KSK A;  2LT8 A;  1BCG A;  1N4N A;  3E7R L;  1ICA A; 
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similar chains in the pdb database (?% sequence similarity)

 
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