4HHFA

Crystal structure of chemically synthesized scorpion alpha-toxin od1
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
65
structure length
65
Chain Sequence
GVRDAYIADDKNCVYTCASNGYCNTECTKNGAESGYCQWIGRYGNACWCIKLPDEVPIRIPGKCR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (53-56)S1 (2-6)O1 (13-64)S2 (8-9)S3 (13-14)TI1 (9-12)S4 (34-39)S5 (45-53)AH1 (20-30)3H1 (41-43)Updating...
connected with : NaN
molecule tags Toxin
publication title Chemical engineering and structural and pharmacological characterization of the alpha-scorpion toxin OD1.
pubmed doi rcsb
molecule keywords Alpha-toxin OD1
total genus 17
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4hhfA00
4KYPA 2KBKA 1SNBA 1JZAA 2N69A 3E7RL 1WT7A 1NRAA 2LJMA 1ZFUA 2KBHA 1MYNA 1C55A 4HE7A 1T7AA 1ZYVA 2N2RA 2ATBA 1C56A 1GPTA 1TI5A 2LI7A 4UJ0A 1SN1A 1WWNA 1FH3A 2KPYA 1B7DA 1P0AA 1NH5A 1AYJA 2MZ0A 2KYQA 1PE4A 1NPIA 3E7UX 1I6GA 2LKBA 1VNBA 2NY9X 1ZVGA 4V1DC 5KK4A 2GL1A 1LQIA 1DQ7A 2YBRC 1NRBA 2NY8X 1CN2A 1I2UA 2N66A 1I6FA 1ICAA 1BRZA 2A7TA 1MR4A 1LQHA 1ZUTA 1L4VA 1OMYA 2N2QA 4AAZA 1AHOA 1LQQA 2B68A 2YC1C 1P00A 1ZU3A 2LR3A 1BK8A 1BCGA 1T0ZA 1SN4A 1T1TA 1ZYWA 4CQKA 2KSKA 1BMRA 1WMTA 1N4NA 1ZVEA 1T7EA 2BRZA 4HHFA 2ASCA 2LT8A 1JXCA 2B3CA 2E3GA 2E0HA 4AB0A 1GPSA 2SN3A 2KBJA 2KJAA 2LJ7A 2LY5A 2LY6A 2YEOA 3PSMA 1CHZA 1T7BA 2M8BB 1I2VA 5CY0A 2KGQA 1PX9A 1PTXA 1VNAA 1DJTA 1OZZA 2E3FA 1NE5A 4AEIA 1SEGA 1KV0A 1JZBA 1JKZA 2I61A 1B3CA
chains in the Genus database with same CATH superfamily
3KOXA 3LDQA 4KYPA 2KBKA 1SNBA 1JZAA 2N69A 3E7RL 4FSVA 1WT7A 1NRAA 2LJMA 1ZFUA 2KBHA 1MYNA 2QWQA 2LN8A 2QWOA 3KC6A 3KOWA 4HE7A 5EY4A 1C55A 3FZLA 1T7AA 2BUPA 1ZYVA 3GL1A 3KOZA 5EXWA 2N2RA 2ATBA 2GMOA 1C56A 1NGIA 5F2RA 1TI5A 2LI7A 1GPTA 4KBOA 4UJ0A 1QQOA 1NGJA 1SN1A 1WWNA 1NGAA 4UAEF 1FH3A 2KPYA 1B7DA 1P0AA 1QQNA 2E8AA 3KOYA 4UADE 5AQFA 1NH5A 5EX5A 5AQWA 3I33A 4HWIA 1HPMA 3KHWA 2MZ0A 5AQPA 2QWRA 1AYJA 1KAXA 2KYQA 3LDPA 5AQTA 5F1XA 3LDLA 3SF4D 1PE4A 2QWMA 1NPIA 3QFUA 1BA1A 3C7NA 1S3XA 3A8YA 3E7UX 1HX1A 2YILA 2LKBA 3KVGA 5AQVA 4IO8A 1I6GA 1VNBA 5BN9A 2NY9X 1ZVGA 4V1DC 3KP1A 1NGHA 2QW9A 3AY9A 3L56A 5KK4A 2GL1A 1LQIA 3C7NB 2KHOA 1DQ7A 2YBRC 5AQKA 3KP0A 5F0XA 5BPNA 1NRBA 2NY8X 1CN2A 1I2UA 3L6QA 3LDNA 2N66A 3QMLA 5AR0A 1K8BA 1I6FA 5AQSA 5AQZA 2MN5A 1POIA 2K35A 1ICAA 1BRZA 2A7TA 1NGDA 5BN8A 1MR4A 1KAYA 5FPEA 1LQHA 1BUPA 1ZUTA 2MBKA 3CW4A 1OMYA 5AQGA 1L4VA 4H5NA 2N2QA 4AAZA 1AHOA 3LDOA 4H5TA 5AQXA 1LQQA 3FZKA 2QWNA 2B68A 2YC1C 1P00A 5BPLA 1ZU3A 1XRSB 3FZHA 3FE1A 5FPMA 2LR3A 3FZFA 1KAZA 1NGGA 1BCGA 1YUWA 5AQHA 5AQYA 1BK8A 1HJOA 1BA0A 2D56A 1T0ZA 1NGCA 1SN4A 1T1TA 1ZYWA 3L4IA 4CQKA 1ATRA 2JDQD 2QWPA 2KSKA 2QWLA 3D2EA 5EVZA 1BMRA 3HSCA 3GDQA 4H5RA 1WMTA 1N4NA 1ZVEA 1T7EA 1NGEA 3JXUA 2BRZA 4HHFA 2ASCA 2LT8A 3CQXA 1JXCA 3R2VA 3IUCA 2B3CA 5AQUA 2E3GA 4GNIA 2E0HA 4AB0A 5AQOA 2E88A 2YIOA 4UAFE 2SN3A 1UGLA 5AQIA 3BK3C 5AQLA 1GPSA 2YIPA 2KBJA 3QI7A 2QXLA 1QQMA 5AQRA 5AQNA 2KJAA 1NGBA 5AQMA 2LJ7A 4H5VA 2E2FA 2LY5A 2LY6A 2YEOA 3ATUA 1CHZA 1T7BA 2M8BB 3PSMA 1DKGD 3FZMA 1I2VA 5CY0A 1NGFA 5AQQA 2KGQA 1ATSA 1PX9A 1PTXA 1VNAA 3D2FA 5FPDA 2V7ZA 3GKUA 1DJTA 1OZZA 2E3FA 1NE5A 4AEIA 5AQJA 2VY6A 3ATVA 4FL9A 1SEGA 1KV0A 3D2FB 2G2KA 3QFPA 4H5WA 1JZBA 3D2EB 5FPNA 5BPMA 1JKZA 2I61A 1B3CA 3M3ZA
chains in the Genus database with same CATH topology
4KYPA 2KBKA 1SNBA 1JZAA 2N69A 3E7RL 1WT7A 1NRAA 2LJMA 1ZFUA 2KBHA 1MYNA 1C55A 4HE7A 1T7AA 1ZYVA 2N2RA 2ATBA 1C56A 1GPTA 1TI5A 2LI7A 4UJ0A 1SN1A 1WWNA 1FH3A 2KPYA 1B7DA 1P0AA 1NH5A 1AYJA 2MZ0A 2KYQA 1PE4A 1NPIA 3E7UX 1I6GA 2LKBA 1VNBA 2NY9X 1ZVGA 4V1DC 5KK4A 2GL1A 1LQIA 1DQ7A 2YBRC 1NRBA 2NY8X 1CN2A 1I2UA 2N66A 1I6FA 1ICAA 1BRZA 2A7TA 1MR4A 1LQHA 1ZUTA 1L4VA 1OMYA 2N2QA 4AAZA 1AHOA 1LQQA 2B68A 2YC1C 1P00A 1ZU3A 2LR3A 1BK8A 1BCGA 1T0ZA 1SN4A 1T1TA 1ZYWA 4CQKA 2KSKA 1BMRA 1WMTA 1N4NA 1ZVEA 1T7EA 2BRZA 4HHFA 2ASCA 2LT8A 1JXCA 2B3CA 2E3GA 2E0HA 4AB0A 1GPSA 2SN3A 2KBJA 2KJAA 2LJ7A 2LY5A 2LY6A 2YEOA 3PSMA 1CHZA 1T7BA 2M8BB 1I2VA 5CY0A 2KGQA 1PX9A 1PTXA 1VNAA 1DJTA 1OZZA 2E3FA 1NE5A 4AEIA 1SEGA 1KV0A 1JZBA 1JKZA 2I61A 1B3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KYP A;  2KBK A;  1SNB A;  1JZA A;  2N69 A;  3E7R L;  1WT7 A;  1NRA A;  2LJM A;  1ZFU A;  2KBH A;  1MYN A;  1C55 A;  4HE7 A;  1T7A A;  1ZYV A;  2N2R A;  2ATB A;  1C56 A;  1GPT A;  1TI5 A;  2LI7 A;  4UJ0 A;  1SN1 A;  1WWN A;  1FH3 A;  2KPY A;  1B7D A;  1P0A A;  1NH5 A;  1AYJ A;  2MZ0 A;  2KYQ A;  1PE4 A;  1NPI A;  3E7U X;  1I6G A;  2LKB A;  1VNB A;  2NY9 X;  1ZVG A;  4V1D C;  5KK4 A;  2GL1 A;  1LQI A;  1DQ7 A;  2YBR C;  1NRB A;  2NY8 X;  1CN2 A;  1I2U A;  2N66 A;  1I6F A;  1ICA A;  1BRZ A;  2A7T A;  1MR4 A;  1LQH A;  1ZUT A;  1L4V A;  1OMY A;  2N2Q A;  4AAZ A;  1AHO A;  1LQQ A;  2B68 A;  2YC1 C;  1P00 A;  1ZU3 A;  2LR3 A;  1BK8 A;  1BCG A;  1T0Z A;  1SN4 A;  1T1T A;  1ZYW A;  4CQK A;  2KSK A;  1BMR A;  1WMT A;  1N4N A;  1ZVE A;  1T7E A;  2BRZ A;  4HHF A;  2ASC A;  2LT8 A;  1JXC A;  2B3C A;  2E3G A;  2E0H A;  4AB0 A;  1GPS A;  2SN3 A;  2KBJ A;  2KJA A;  2LJ7 A;  2LY5 A;  2LY6 A;  2YEO A;  3PSM A;  1CHZ A;  1T7B A;  2M8B B;  1I2V A;  5CY0 A;  2KGQ A;  1PX9 A;  1PTX A;  1VNA A;  1DJT A;  1OZZ A;  2E3F A;  1NE5 A;  4AEI A;  1SEG A;  1KV0 A;  1JZB A;  1JKZ A;  2I61 A;  1B3C A; 
#chains in the Genus database with same CATH topology
 3KOX A;  3LDQ A;  4KYP A;  2KBK A;  1SNB A;  1JZA A;  2N69 A;  3E7R L;  4FSV A;  1WT7 A;  1NRA A;  2LJM A;  1ZFU A;  2KBH A;  1MYN A;  2QWQ A;  2LN8 A;  2QWO A;  3KC6 A;  3KOW A;  4HE7 A;  5EY4 A;  1C55 A;  3FZL A;  1T7A A;  2BUP A;  1ZYV A;  3GL1 A;  3KOZ A;  5EXW A;  2N2R A;  2ATB A;  2GMO A;  1C56 A;  1NGI A;  5F2R A;  1TI5 A;  2LI7 A;  1GPT A;  4KBO A;  4UJ0 A;  1QQO A;  1NGJ A;  1SN1 A;  1WWN A;  1NGA A;  4UAE F;  1FH3 A;  2KPY A;  1B7D A;  1P0A A;  1QQN A;  2E8A A;  3KOY A;  4UAD E;  5AQF A;  1NH5 A;  5EX5 A;  5AQW A;  3I33 A;  4HWI A;  1HPM A;  3KHW A;  2MZ0 A;  5AQP A;  2QWR A;  1AYJ A;  1KAX A;  2KYQ A;  3LDP A;  5AQT A;  5F1X A;  3LDL A;  3SF4 D;  1PE4 A;  2QWM A;  1NPI A;  3QFU A;  1BA1 A;  3C7N A;  1S3X A;  3A8Y A;  3E7U X;  1HX1 A;  2YIL A;  2LKB A;  3KVG A;  5AQV A;  4IO8 A;  1I6G A;  1VNB A;  5BN9 A;  2NY9 X;  1ZVG A;  4V1D C;  3KP1 A;  1NGH A;  2QW9 A;  3AY9 A;  3L56 A;  5KK4 A;  2GL1 A;  1LQI A;  3C7N B;  2KHO A;  1DQ7 A;  2YBR C;  5AQK A;  3KP0 A;  5F0X A;  5BPN A;  1NRB A;  2NY8 X;  1CN2 A;  1I2U A;  3L6Q A;  3LDN A;  2N66 A;  3QML A;  5AR0 A;  1K8B A;  1I6F A;  5AQS A;  5AQZ A;  2MN5 A;  1POI A;  2K35 A;  1ICA A;  1BRZ A;  2A7T A;  1NGD A;  5BN8 A;  1MR4 A;  1KAY A;  5FPE A;  1LQH A;  1BUP A;  1ZUT A;  2MBK A;  3CW4 A;  1OMY A;  5AQG A;  1L4V A;  4H5N A;  2N2Q A;  4AAZ A;  1AHO A;  3LDO A;  4H5T A;  5AQX A;  1LQQ A;  3FZK A;  2QWN A;  2B68 A;  2YC1 C;  1P00 A;  5BPL A;  1ZU3 A;  1XRS B;  3FZH A;  3FE1 A;  5FPM A;  2LR3 A;  3FZF A;  1KAZ A;  1NGG A;  1BCG A;  1YUW A;  5AQH A;  5AQY A;  1BK8 A;  1HJO A;  1BA0 A;  2D56 A;  1T0Z A;  1NGC A;  1SN4 A;  1T1T A;  1ZYW A;  3L4I A;  4CQK A;  1ATR A;  2JDQ D;  2QWP A;  2KSK A;  2QWL A;  3D2E A;  5EVZ A;  1BMR A;  3HSC A;  3GDQ A;  4H5R A;  1WMT A;  1N4N A;  1ZVE A;  1T7E A;  1NGE A;  3JXU A;  2BRZ A;  4HHF A;  2ASC A;  2LT8 A;  3CQX A;  1JXC A;  3R2V A;  3IUC A;  2B3C A;  5AQU A;  2E3G A;  4GNI A;  2E0H A;  4AB0 A;  5AQO A;  2E88 A;  2YIO A;  4UAF E;  2SN3 A;  1UGL A;  5AQI A;  3BK3 C;  5AQL A;  1GPS A;  2YIP A;  2KBJ A;  3QI7 A;  2QXL A;  1QQM A;  5AQR A;  5AQN A;  2KJA A;  1NGB A;  5AQM A;  2LJ7 A;  4H5V A;  2E2F A;  2LY5 A;  2LY6 A;  2YEO A;  3ATU A;  1CHZ A;  1T7B A;  2M8B B;  3PSM A;  1DKG D;  3FZM A;  1I2V A;  5CY0 A;  1NGF A;  5AQQ A;  2KGQ A;  1ATS A;  1PX9 A;  1PTX A;  1VNA A;  3D2F A;  5FPD A;  2V7Z A;  3GKU A;  1DJT A;  1OZZ A;  2E3F A;  1NE5 A;  4AEI A;  5AQJ A;  2VY6 A;  3ATV A;  4FL9 A;  1SEG A;  1KV0 A;  3D2F B;  2G2K A;  3QFP A;  4H5W A;  1JZB A;  3D2E B;  5FPN A;  5BPM A;  1JKZ A;  2I61 A;  1B3C A;  3M3Z A; 
#chains in the Genus database with same CATH homology
 4KYP A;  2KBK A;  1SNB A;  1JZA A;  2N69 A;  3E7R L;  1WT7 A;  1NRA A;  2LJM A;  1ZFU A;  2KBH A;  1MYN A;  1C55 A;  4HE7 A;  1T7A A;  1ZYV A;  2N2R A;  2ATB A;  1C56 A;  1GPT A;  1TI5 A;  2LI7 A;  4UJ0 A;  1SN1 A;  1WWN A;  1FH3 A;  2KPY A;  1B7D A;  1P0A A;  1NH5 A;  1AYJ A;  2MZ0 A;  2KYQ A;  1PE4 A;  1NPI A;  3E7U X;  1I6G A;  2LKB A;  1VNB A;  2NY9 X;  1ZVG A;  4V1D C;  5KK4 A;  2GL1 A;  1LQI A;  1DQ7 A;  2YBR C;  1NRB A;  2NY8 X;  1CN2 A;  1I2U A;  2N66 A;  1I6F A;  1ICA A;  1BRZ A;  2A7T A;  1MR4 A;  1LQH A;  1ZUT A;  1L4V A;  1OMY A;  2N2Q A;  4AAZ A;  1AHO A;  1LQQ A;  2B68 A;  2YC1 C;  1P00 A;  1ZU3 A;  2LR3 A;  1BK8 A;  1BCG A;  1T0Z A;  1SN4 A;  1T1T A;  1ZYW A;  4CQK A;  2KSK A;  1BMR A;  1WMT A;  1N4N A;  1ZVE A;  1T7E A;  2BRZ A;  4HHF A;  2ASC A;  2LT8 A;  1JXC A;  2B3C A;  2E3G A;  2E0H A;  4AB0 A;  1GPS A;  2SN3 A;  2KBJ A;  2KJA A;  2LJ7 A;  2LY5 A;  2LY6 A;  2YEO A;  3PSM A;  1CHZ A;  1T7B A;  2M8B B;  1I2V A;  5CY0 A;  2KGQ A;  1PX9 A;  1PTX A;  1VNA A;  1DJT A;  1OZZ A;  2E3F A;  1NE5 A;  4AEI A;  1SEG A;  1KV0 A;  1JZB A;  1JKZ A;  2I61 A;  1B3C A; 
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