4KYPA

Beta-scorpion toxin folded in the periplasm of e.coli
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
72
structure length
72
Chain Sequence
KKNGYPLDRNGKTTECSGVNAIAPHYCNSECTKVYYAESGYCCWGACYCFGLEDDKPIGPMKDITKKYCDVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Chaperone-mediated native folding of a beta-scorpion toxin in the periplasm of Escherichia coli.
pubmed doi rcsb
molecule tags Toxin
source organism Hottentotta judaicus
molecule keywords Beta-insect excitatory toxin Bj-xtrIT
total genus 18
structure length 72
sequence length 72
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4kypA00
4HE7A 1CHZA 4CQKA 1MYNA 3PSMA 1P00A 1SN1A 1BMRA 1P0AA 1ZUTA 1I2UA 1LQQA 1JKZA 1C56A 2E3GA 1GPSA 1NRAA 4HHFA 1NRBA 2NY8X 1SNBA 1PE4A 1T7BA 1ZYVA 1MR4A 2GL1A 1VNBA 2E0HA 1DJTA 1T0ZA 5CY0A 2E3FA 4AEIA 1GPTA 1FH3A 1NE5A 1TI5A 1WT7A 3E7RL 1I6GA 1ZYWA 2BRZA 1BK8A 2KGQA 1WWNA 4UJ0A 2ASCA 2KPYA 1WMTA 4AAZA 2LKBA 1OZZA 2LR3A 1KV0A 2B68A 1N4NA 2N2RA 2MZ0A 1L4VA 2ATBA 4V1DC 2B3CA 1SN4A 4KYPA 2LT8A 1AYJA 1AHOA 1VNAA 1LQHA 1JZAA 1LQIA 2YEOA 1T1TA 1CN2A 2I61A 1JZBA 1ICAA 2N2QA 1BCGA 1SEGA 2A7TA 2LJMA 2KYQA 1T7EA 1NPIA 2LJ7A 2SN3A 1PX9A 1I6FA 3E7UX 1BRZA 1C55A 2KSKA 1JXCA 2LY6A 2YC1C 1B7DA 2NY9X 1B3CA 2LY5A 1PTXA 1I2VA 1T7AA 2N66A 1DQ7A 2KBJA 2M8BB 5KK4A 1ZVEA 2LI7A 2YBRC 1ZU3A 2KBKA 1NH5A 2KJAA 1ZFUA 4AB0A 1ZVGA 2N69A 2KBHA 1OMYA
chains in the Genus database with same CATH superfamily
2K35A 5EXWA 5AQNA 4HE7A 3GL1A 3QFPA 3C7NA 4FSVA 1YUWA 5F0XA 5AQMA 5AR0A 3KHWA 1CHZA 3FZKA 3LDOA 5BN9A 4CQKA 2QWLA 1NGFA 5AQFA 2QXLA 2QWNA 2GMOA 1MYNA 3PSMA 2JDQD 2QWRA 1HX1A 2KHOA 1P00A 5FPDA 1NGGA 1SN1A 4AAZA 1BMRA 1BUPA 2QWPA 1P0AA 3FZLA 1NGIA 3FZMA 1NGHA 1ZUTA 1I2UA 1LQQA 3LDPA 1JKZA 1C56A 3KVGA 2E3GA 1GPSA 5FPEA 3L4IA 1NRAA 4HHFA 3KC6A 3LDNA 4KBOA 1NRBA 2NY8X 3L56A 5F1XA 1SNBA 4UAFE 3D2EA 1PE4A 1T7BA 3KOWA 1QQMA 1KAZA 3D2FB 3JXUA 2BUPA 1ZYVA 2YIPA 1MR4A 5AQXA 5AQZA 1NGDA 2GL1A 5AQJA 3KOZA 5AQTA 1VNBA 2E0HA 3L6QA 2QWQA 1DJTA 4H5RA 5EVZA 1T0ZA 1POIA 3LDLA 5BN8A 4H5NA 5CY0A 5BPMA 3GKUA 1NGJA 1HJOA 3BK3C 3KOYA 4H5VA 2E3FA 2MN5A 3A8YA 5AQQA 1KAXA 4AEIA 1GPTA 1FH3A 1NE5A 2QW9A 3AY9A 3FE1A 3QFUA 4UADE 2G2KA 3FZHA 5AQHA 5AQIA 3KP0A 1DKGD 1TI5A 1WT7A 5BPNA 1L4VA 3E7RL 1I6GA 1ZYWA 1XRSB 2BRZA 1BK8A 3C7NB 2KGQA 3GDQA 1BA0A 1BA1A 5BPLA 1WWNA 4UJ0A 2ASCA 2KPYA 1WMTA 2E2FA 2YIOA 2LKBA 1NGEA 1OZZA 2LR3A 3R2VA 1KV0A 1ATSA 2B68A 1N4NA 2MBKA 2MZ0A 1NGCA 2N2RA 1UGLA 3CW4A 2ATBA 3I33A 3LDQA 4V1DC 5FPMA 1ATRA 2B3CA 1SN4A 4KYPA 2LT8A 1AYJA 1AHOA 1QQNA 1QQOA 1VNAA 1LQHA 2V7ZA 1JZAA 1LQIA 2YEOA 5AQRA 3M3ZA 5AQLA 5AQKA 1T1TA 3KOXA 3CQXA 5EX5A 1CN2A 2YILA 1HPMA 2I61A 1JZBA 5F2RA 1ICAA 2N2QA 1BCGA 4FL9A 5AQUA 1SEGA 2A7TA 1S3XA 2LJMA 3KP1A 4HWIA 2KYQA 1T7EA 4IO8A 5AQSA 3IUCA 3D2FA 1NPIA 2LJ7A 2QWOA 2SN3A 3D2EB 1PX9A 3SF4D 1I6FA 3E7UX 5AQWA 1BRZA 1C55A 2KSKA 1JXCA 2LY6A 1NGAA 2E88A 5AQGA 2YC1C 1B7DA 2NY9X 5AQOA 1B3CA 2LY5A 1PTXA 2VY6A 2E8AA 5AQVA 2LN8A 2QWMA 4H5WA 1I2VA 1T7AA 2N66A 4H5TA 1DQ7A 5FPNA 2KBJA 2M8BB 5KK4A 1ZVEA 5EY4A 2LI7A 2YBRC 1ZU3A 1NGBA 2KBKA 1NH5A 2KJAA 3FZFA 4GNIA 3HSCA 3ATVA 1K8BA 1KAYA 1ZFUA 3ATUA 4UAEF 4AB0A 3QMLA 1ZVGA 2N69A 5AQYA 5AQPA 2KBHA 1OMYA 2D56A 3QI7A
chains in the Genus database with same CATH topology
4HE7A 1CHZA 4CQKA 1MYNA 3PSMA 1P00A 1SN1A 1BMRA 1P0AA 1ZUTA 1I2UA 1LQQA 1JKZA 1C56A 2E3GA 1GPSA 1NRAA 4HHFA 1NRBA 2NY8X 1SNBA 1PE4A 1T7BA 1ZYVA 1MR4A 2GL1A 1VNBA 2E0HA 1DJTA 1T0ZA 5CY0A 2E3FA 4AEIA 1GPTA 1FH3A 1NE5A 1TI5A 1WT7A 3E7RL 1I6GA 1ZYWA 2BRZA 1BK8A 2KGQA 1WWNA 4UJ0A 2ASCA 2KPYA 1WMTA 4AAZA 2LKBA 1OZZA 2LR3A 1KV0A 2B68A 1N4NA 2N2RA 2MZ0A 1L4VA 2ATBA 4V1DC 2B3CA 1SN4A 4KYPA 2LT8A 1AYJA 1AHOA 1VNAA 1LQHA 1JZAA 1LQIA 2YEOA 1T1TA 1CN2A 2I61A 1JZBA 1ICAA 2N2QA 1BCGA 1SEGA 2A7TA 2LJMA 2KYQA 1T7EA 1NPIA 2LJ7A 2SN3A 1PX9A 1I6FA 3E7UX 1BRZA 1C55A 2KSKA 1JXCA 2LY6A 2YC1C 1B7DA 2NY9X 1B3CA 2LY5A 1PTXA 1I2VA 1T7AA 2N66A 1DQ7A 2KBJA 2M8BB 5KK4A 1ZVEA 2LI7A 2YBRC 1ZU3A 2KBKA 1NH5A 2KJAA 1ZFUA 4AB0A 1ZVGA 2N69A 2KBHA 1OMYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HE7 A;  1CHZ A;  4CQK A;  1MYN A;  3PSM A;  1P00 A;  1SN1 A;  1BMR A;  1P0A A;  1ZUT A;  1I2U A;  1LQQ A;  1JKZ A;  1C56 A;  2E3G A;  1GPS A;  1NRA A;  4HHF A;  1NRB A;  2NY8 X;  1SNB A;  1PE4 A;  1T7B A;  1ZYV A;  1MR4 A;  2GL1 A;  1VNB A;  2E0H A;  1DJT A;  1T0Z A;  5CY0 A;  2E3F A;  4AEI A;  1GPT A;  1FH3 A;  1NE5 A;  1TI5 A;  1WT7 A;  3E7R L;  1I6G A;  1ZYW A;  2BRZ A;  1BK8 A;  2KGQ A;  1WWN A;  4UJ0 A;  2ASC A;  2KPY A;  1WMT A;  4AAZ A;  2LKB A;  1OZZ A;  2LR3 A;  1KV0 A;  2B68 A;  1N4N A;  2N2R A;  2MZ0 A;  1L4V A;  2ATB A;  4V1D C;  2B3C A;  1SN4 A;  4KYP A;  2LT8 A;  1AYJ A;  1AHO A;  1VNA A;  1LQH A;  1JZA A;  1LQI A;  2YEO A;  1T1T A;  1CN2 A;  2I61 A;  1JZB A;  1ICA A;  2N2Q A;  1BCG A;  1SEG A;  2A7T A;  2LJM A;  2KYQ A;  1T7E A;  1NPI A;  2LJ7 A;  2SN3 A;  1PX9 A;  1I6F A;  3E7U X;  1BRZ A;  1C55 A;  2KSK A;  1JXC A;  2LY6 A;  2YC1 C;  1B7D A;  2NY9 X;  1B3C A;  2LY5 A;  1PTX A;  1I2V A;  1T7A A;  2N66 A;  1DQ7 A;  2KBJ A;  2M8B B;  5KK4 A;  1ZVE A;  2LI7 A;  2YBR C;  1ZU3 A;  2KBK A;  1NH5 A;  2KJA A;  1ZFU A;  4AB0 A;  1ZVG A;  2N69 A;  2KBH A;  1OMY A; 
#chains in the Genus database with same CATH topology
 2K35 A;  5EXW A;  5AQN A;  4HE7 A;  3GL1 A;  3QFP A;  3C7N A;  4FSV A;  1YUW A;  5F0X A;  5AQM A;  5AR0 A;  3KHW A;  1CHZ A;  3FZK A;  3LDO A;  5BN9 A;  4CQK A;  2QWL A;  1NGF A;  5AQF A;  2QXL A;  2QWN A;  2GMO A;  1MYN A;  3PSM A;  2JDQ D;  2QWR A;  1HX1 A;  2KHO A;  1P00 A;  5FPD A;  1NGG A;  1SN1 A;  4AAZ A;  1BMR A;  1BUP A;  2QWP A;  1P0A A;  3FZL A;  1NGI A;  3FZM A;  1NGH A;  1ZUT A;  1I2U A;  1LQQ A;  3LDP A;  1JKZ A;  1C56 A;  3KVG A;  2E3G A;  1GPS A;  5FPE A;  3L4I A;  1NRA A;  4HHF A;  3KC6 A;  3LDN A;  4KBO A;  1NRB A;  2NY8 X;  3L56 A;  5F1X A;  1SNB A;  4UAF E;  3D2E A;  1PE4 A;  1T7B A;  3KOW A;  1QQM A;  1KAZ A;  3D2F B;  3JXU A;  2BUP A;  1ZYV A;  2YIP A;  1MR4 A;  5AQX A;  5AQZ A;  1NGD A;  2GL1 A;  5AQJ A;  3KOZ A;  5AQT A;  1VNB A;  2E0H A;  3L6Q A;  2QWQ A;  1DJT A;  4H5R A;  5EVZ A;  1T0Z A;  1POI A;  3LDL A;  5BN8 A;  4H5N A;  5CY0 A;  5BPM A;  3GKU A;  1NGJ A;  1HJO A;  3BK3 C;  3KOY A;  4H5V A;  2E3F A;  2MN5 A;  3A8Y A;  5AQQ A;  1KAX A;  4AEI A;  1GPT A;  1FH3 A;  1NE5 A;  2QW9 A;  3AY9 A;  3FE1 A;  3QFU A;  4UAD E;  2G2K A;  3FZH A;  5AQH A;  5AQI A;  3KP0 A;  1DKG D;  1TI5 A;  1WT7 A;  5BPN A;  1L4V A;  3E7R L;  1I6G A;  1ZYW A;  1XRS B;  2BRZ A;  1BK8 A;  3C7N B;  2KGQ A;  3GDQ A;  1BA0 A;  1BA1 A;  5BPL A;  1WWN A;  4UJ0 A;  2ASC A;  2KPY A;  1WMT A;  2E2F A;  2YIO A;  2LKB A;  1NGE A;  1OZZ A;  2LR3 A;  3R2V A;  1KV0 A;  1ATS A;  2B68 A;  1N4N A;  2MBK A;  2MZ0 A;  1NGC A;  2N2R A;  1UGL A;  3CW4 A;  2ATB A;  3I33 A;  3LDQ A;  4V1D C;  5FPM A;  1ATR A;  2B3C A;  1SN4 A;  4KYP A;  2LT8 A;  1AYJ A;  1AHO A;  1QQN A;  1QQO A;  1VNA A;  1LQH A;  2V7Z A;  1JZA A;  1LQI A;  2YEO A;  5AQR A;  3M3Z A;  5AQL A;  5AQK A;  1T1T A;  3KOX A;  3CQX A;  5EX5 A;  1CN2 A;  2YIL A;  1HPM A;  2I61 A;  1JZB A;  5F2R A;  1ICA A;  2N2Q A;  1BCG A;  4FL9 A;  5AQU A;  1SEG A;  2A7T A;  1S3X A;  2LJM A;  3KP1 A;  4HWI A;  2KYQ A;  1T7E A;  4IO8 A;  5AQS A;  3IUC A;  3D2F A;  1NPI A;  2LJ7 A;  2QWO A;  2SN3 A;  3D2E B;  1PX9 A;  3SF4 D;  1I6F A;  3E7U X;  5AQW A;  1BRZ A;  1C55 A;  2KSK A;  1JXC A;  2LY6 A;  1NGA A;  2E88 A;  5AQG A;  2YC1 C;  1B7D A;  2NY9 X;  5AQO A;  1B3C A;  2LY5 A;  1PTX A;  2VY6 A;  2E8A A;  5AQV A;  2LN8 A;  2QWM A;  4H5W A;  1I2V A;  1T7A A;  2N66 A;  4H5T A;  1DQ7 A;  5FPN A;  2KBJ A;  2M8B B;  5KK4 A;  1ZVE A;  5EY4 A;  2LI7 A;  2YBR C;  1ZU3 A;  1NGB A;  2KBK A;  1NH5 A;  2KJA A;  3FZF A;  4GNI A;  3HSC A;  3ATV A;  1K8B A;  1KAY A;  1ZFU A;  3ATU A;  4UAE F;  4AB0 A;  3QML A;  1ZVG A;  2N69 A;  5AQY A;  5AQP A;  2KBH A;  1OMY A;  2D56 A;  3QI7 A; 
#chains in the Genus database with same CATH homology
 4HE7 A;  1CHZ A;  4CQK A;  1MYN A;  3PSM A;  1P00 A;  1SN1 A;  1BMR A;  1P0A A;  1ZUT A;  1I2U A;  1LQQ A;  1JKZ A;  1C56 A;  2E3G A;  1GPS A;  1NRA A;  4HHF A;  1NRB A;  2NY8 X;  1SNB A;  1PE4 A;  1T7B A;  1ZYV A;  1MR4 A;  2GL1 A;  1VNB A;  2E0H A;  1DJT A;  1T0Z A;  5CY0 A;  2E3F A;  4AEI A;  1GPT A;  1FH3 A;  1NE5 A;  1TI5 A;  1WT7 A;  3E7R L;  1I6G A;  1ZYW A;  2BRZ A;  1BK8 A;  2KGQ A;  1WWN A;  4UJ0 A;  2ASC A;  2KPY A;  1WMT A;  4AAZ A;  2LKB A;  1OZZ A;  2LR3 A;  1KV0 A;  2B68 A;  1N4N A;  2N2R A;  2MZ0 A;  1L4V A;  2ATB A;  4V1D C;  2B3C A;  1SN4 A;  4KYP A;  2LT8 A;  1AYJ A;  1AHO A;  1VNA A;  1LQH A;  1JZA A;  1LQI A;  2YEO A;  1T1T A;  1CN2 A;  2I61 A;  1JZB A;  1ICA A;  2N2Q A;  1BCG A;  1SEG A;  2A7T A;  2LJM A;  2KYQ A;  1T7E A;  1NPI A;  2LJ7 A;  2SN3 A;  1PX9 A;  1I6F A;  3E7U X;  1BRZ A;  1C55 A;  2KSK A;  1JXC A;  2LY6 A;  2YC1 C;  1B7D A;  2NY9 X;  1B3C A;  2LY5 A;  1PTX A;  1I2V A;  1T7A A;  2N66 A;  1DQ7 A;  2KBJ A;  2M8B B;  5KK4 A;  1ZVE A;  2LI7 A;  2YBR C;  1ZU3 A;  2KBK A;  1NH5 A;  2KJA A;  1ZFU A;  4AB0 A;  1ZVG A;  2N69 A;  2KBH A;  1OMY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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