4AAZA

X-ray structure of nicotiana alata defensin 1 nad1
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
total genus 13
structure length 47
sequence length 47
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4aazA00
2LY6A 3E7UX 1VNAA 1NRAA 1P00A 4UJ0A 1N4NA 2KGQA 1WMTA 1DJTA 4HE7A 1BRZA 2BRZA 1BK8A 1NPIA 1PE4A 2N2QA 1P0AA 1I6FA 1ZVEA 2LY5A 1T0ZA 1BMRA 4V1DC 2KPYA 2KYQA 2LKBA 1I2UA 1PTXA 1AYJA 2B68A 1NE5A 1OZZA 2YEOA 1B7DA 2LJMA 1SN1A 1ICAA 2SN3A 1I6GA 1MYNA 1WT7A 2ASCA 1LQIA 2B3CA 1TI5A 1VNBA 1GPSA 1CHZA 2KSKA 2N66A 1SEGA 1FH3A 1ZUTA 1C55A 1BCGA 2NY8X 2KBJA 1GPTA 1ZYWA 1LQHA 2YC1C 2E3GA 2KBHA 1T7EA 1T1TA 1B3CA 1T7BA 2LI7A 1PX9A 1L4VA 1NRBA 1T7AA 2KJAA 1SNBA 2ATBA 2I61A 4AAZA 1JZAA 1JZBA 4HHFA 1AHOA 2YBRC 1I2VA 1MR4A 1SN4A 4AEIA 2E3FA 2LR3A 2LJ7A 3PSMA 1ZVGA 2NY9X 1JKZA 1KV0A 4CQKA 1NH5A 2N2RA 1OMYA 1C56A 2E0HA 2GL1A 1WWNA 2M8BB 5KK4A 5CY0A 2N69A 4KYPA 4AB0A 1ZFUA 1LQQA 1ZU3A 2LT8A 1DQ7A 1JXCA 1CN2A 3E7RL 1ZYVA 2A7TA 2MZ0A 2KBKA
chains in the Genus database with same CATH superfamily
2LY6A 2YILA 3E7UX 1VNAA 2E88A 4HWIA 3KP0A 5AQQA 1NRAA 1P00A 1POIA 1N4NA 2KGQA 2QWQA 5AQIA 4UJ0A 1WMTA 1DJTA 4HE7A 1BRZA 2BRZA 3FZMA 3M3ZA 1BK8A 5FPDA 1NPIA 1PE4A 3L6QA 5BPNA 1HJOA 1YUWA 5EY4A 2N2QA 1P0AA 1I6FA 1ZVEA 1QQMA 5AQRA 2LY5A 1T0ZA 3FZLA 5AQUA 4V1DC 1BMRA 2KPYA 4H5NA 3HSCA 2KYQA 2LKBA 2QWPA 3IUCA 1I2UA 1PTXA 1QQNA 2B68A 2KHOA 1AYJA 1NE5A 1OZZA 5AQMA 3GL1A 5BPMA 2YEOA 2K35A 1B7DA 3L4IA 2YIOA 2LJMA 1SN1A 4UAFE 5AQPA 1ICAA 2SN3A 3L56A 1I6GA 3KHWA 1K8BA 1MYNA 1WT7A 1BA1A 2ASCA 4H5RA 1LQIA 2B3CA 1TI5A 2LN8A 1VNBA 3D2EA 1GPSA 2E8AA 2G2KA 1KAXA 1CHZA 5F1XA 5FPMA 1QQOA 3LDOA 1NGDA 1NGCA 5AQGA 5AQFA 4UADE 2KSKA 3R2VA 2MBKA 2N66A 3QFUA 1SEGA 3KOZA 4FL9A 4IO8A 1FH3A 1ATRA 3ATUA 5AQSA 1BUPA 5AQTA 3D2EB 2JDQD 1ZUTA 2E2FA 5EX5A 1HX1A 1C55A 3AY9A 3KOWA 4H5VA 5AQWA 4GNIA 4H5WA 1BCGA 3KP1A 3FZKA 2NY8X 2KBJA 1GPTA 1ZYWA 3I33A 1LQHA 5F2RA 2YC1C 2E3GA 2KBHA 3C7NA 4H5TA 5AQHA 1T7EA 1T1TA 1B3CA 2V7ZA 1T7BA 1ATSA 1NGGA 2LI7A 1HPMA 1S3XA 3LDPA 5AQNA 4FSVA 5AQKA 1PX9A 5F0XA 1NGFA 1L4VA 2QWNA 5FPNA 1NRBA 1T7AA 2KJAA 3SF4D 1SNBA 3QMLA 2ATBA 5BPLA 2I61A 3A8YA 4AAZA 3GDQA 2QW9A 3C7NB 5EVZA 5AQJA 1JZAA 3FE1A 1JZBA 1NGBA 2QWLA 4HHFA 1AHOA 3KC6A 2YBRC 3JXUA 1I2VA 5AQOA 1MR4A 3LDQA 3KOXA 1SN4A 1DKGD 4AEIA 2E3FA 2LR3A 2LJ7A 2YIPA 1NGJA 3PSMA 3ATVA 3FZHA 1XRSB 1ZVGA 2BUPA 2NY9X 2QWMA 1NGEA 3QI7A 1JKZA 1KV0A 4CQKA 1NH5A 2N2RA 1OMYA 3D2FA 3LDNA 5AQZA 1C56A 3KOYA 2QWRA 2QWOA 2D56A 2E0HA 2GL1A 1NGIA 1WWNA 2M8BB 4KBOA 5AQVA 5KK4A 5CY0A 2N69A 4KYPA 4AB0A 2MN5A 1ZFUA 2VY6A 5BN8A 1LQQA 1ZU3A 5AR0A 3CW4A 3BK3C 3FZFA 3QFPA 3D2FB 5AQXA 2LT8A 3LDLA 5AQLA 3KVGA 1DQ7A 1KAYA 5EXWA 5BN9A 1JXCA 5AQYA 3CQXA 2QXLA 1BA0A 1NGAA 1KAZA 3E7RL 1ZYVA 2A7TA 1UGLA 1CN2A 2MZ0A 3GKUA 5FPEA 1NGHA 2GMOA 2KBKA 4UAEF
chains in the Genus database with same CATH topology
2LY6A 3E7UX 1VNAA 1NRAA 1P00A 4UJ0A 1N4NA 2KGQA 1WMTA 1DJTA 4HE7A 1BRZA 2BRZA 1BK8A 1NPIA 1PE4A 2N2QA 1P0AA 1I6FA 1ZVEA 2LY5A 1T0ZA 1BMRA 4V1DC 2KPYA 2KYQA 2LKBA 1I2UA 1PTXA 1AYJA 2B68A 1NE5A 1OZZA 2YEOA 1B7DA 2LJMA 1SN1A 1ICAA 2SN3A 1I6GA 1MYNA 1WT7A 2ASCA 1LQIA 2B3CA 1TI5A 1VNBA 1GPSA 1CHZA 2KSKA 2N66A 1SEGA 1FH3A 1ZUTA 1C55A 1BCGA 2NY8X 2KBJA 1GPTA 1ZYWA 1LQHA 2YC1C 2E3GA 2KBHA 1T7EA 1T1TA 1B3CA 1T7BA 2LI7A 1PX9A 1L4VA 1NRBA 1T7AA 2KJAA 1SNBA 2ATBA 2I61A 4AAZA 1JZAA 1JZBA 4HHFA 1AHOA 2YBRC 1I2VA 1MR4A 1SN4A 4AEIA 2E3FA 2LR3A 2LJ7A 3PSMA 1ZVGA 2NY9X 1JKZA 1KV0A 4CQKA 1NH5A 2N2RA 1OMYA 1C56A 2E0HA 2GL1A 1WWNA 2M8BB 5KK4A 5CY0A 2N69A 4KYPA 4AB0A 1ZFUA 1LQQA 1ZU3A 2LT8A 1DQ7A 1JXCA 1CN2A 3E7RL 1ZYVA 2A7TA 2MZ0A 2KBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LY6 A;  3E7U X;  1VNA A;  1NRA A;  1P00 A;  4UJ0 A;  1N4N A;  2KGQ A;  1WMT A;  1DJT A;  4HE7 A;  1BRZ A;  2BRZ A;  1BK8 A;  1NPI A;  1PE4 A;  2N2Q A;  1P0A A;  1I6F A;  1ZVE A;  2LY5 A;  1T0Z A;  1BMR A;  4V1D C;  2KPY A;  2KYQ A;  2LKB A;  1I2U A;  1PTX A;  1AYJ A;  2B68 A;  1NE5 A;  1OZZ A;  2YEO A;  1B7D A;  2LJM A;  1SN1 A;  1ICA A;  2SN3 A;  1I6G A;  1MYN A;  1WT7 A;  2ASC A;  1LQI A;  2B3C A;  1TI5 A;  1VNB A;  1GPS A;  1CHZ A;  2KSK A;  2N66 A;  1SEG A;  1FH3 A;  1ZUT A;  1C55 A;  1BCG A;  2NY8 X;  2KBJ A;  1GPT A;  1ZYW A;  1LQH A;  2YC1 C;  2E3G A;  2KBH A;  1T7E A;  1T1T A;  1B3C A;  1T7B A;  2LI7 A;  1PX9 A;  1L4V A;  1NRB A;  1T7A A;  2KJA A;  1SNB A;  2ATB A;  2I61 A;  4AAZ A;  1JZA A;  1JZB A;  4HHF A;  1AHO A;  2YBR C;  1I2V A;  1MR4 A;  1SN4 A;  4AEI A;  2E3F A;  2LR3 A;  2LJ7 A;  3PSM A;  1ZVG A;  2NY9 X;  1JKZ A;  1KV0 A;  4CQK A;  1NH5 A;  2N2R A;  1OMY A;  1C56 A;  2E0H A;  2GL1 A;  1WWN A;  2M8B B;  5KK4 A;  5CY0 A;  2N69 A;  4KYP A;  4AB0 A;  1ZFU A;  1LQQ A;  1ZU3 A;  2LT8 A;  1DQ7 A;  1JXC A;  1CN2 A;  3E7R L;  1ZYV A;  2A7T A;  2MZ0 A;  2KBK A; 
#chains in the Genus database with same CATH topology
 2LY6 A;  2YIL A;  3E7U X;  1VNA A;  2E88 A;  4HWI A;  3KP0 A;  5AQQ A;  1NRA A;  1P00 A;  1POI A;  1N4N A;  2KGQ A;  2QWQ A;  5AQI A;  4UJ0 A;  1WMT A;  1DJT A;  4HE7 A;  1BRZ A;  2BRZ A;  3FZM A;  3M3Z A;  1BK8 A;  5FPD A;  1NPI A;  1PE4 A;  3L6Q A;  5BPN A;  1HJO A;  1YUW A;  5EY4 A;  2N2Q A;  1P0A A;  1I6F A;  1ZVE A;  1QQM A;  5AQR A;  2LY5 A;  1T0Z A;  3FZL A;  5AQU A;  4V1D C;  1BMR A;  2KPY A;  4H5N A;  3HSC A;  2KYQ A;  2LKB A;  2QWP A;  3IUC A;  1I2U A;  1PTX A;  1QQN A;  2B68 A;  2KHO A;  1AYJ A;  1NE5 A;  1OZZ A;  5AQM A;  3GL1 A;  5BPM A;  2YEO A;  2K35 A;  1B7D A;  3L4I A;  2YIO A;  2LJM A;  1SN1 A;  4UAF E;  5AQP A;  1ICA A;  2SN3 A;  3L56 A;  1I6G A;  3KHW A;  1K8B A;  1MYN A;  1WT7 A;  1BA1 A;  2ASC A;  4H5R A;  1LQI A;  2B3C A;  1TI5 A;  2LN8 A;  1VNB A;  3D2E A;  1GPS A;  2E8A A;  2G2K A;  1KAX A;  1CHZ A;  5F1X A;  5FPM A;  1QQO A;  3LDO A;  1NGD A;  1NGC A;  5AQG A;  5AQF A;  4UAD E;  2KSK A;  3R2V A;  2MBK A;  2N66 A;  3QFU A;  1SEG A;  3KOZ A;  4FL9 A;  4IO8 A;  1FH3 A;  1ATR A;  3ATU A;  5AQS A;  1BUP A;  5AQT A;  3D2E B;  2JDQ D;  1ZUT A;  2E2F A;  5EX5 A;  1HX1 A;  1C55 A;  3AY9 A;  3KOW A;  4H5V A;  5AQW A;  4GNI A;  4H5W A;  1BCG A;  3KP1 A;  3FZK A;  2NY8 X;  2KBJ A;  1GPT A;  1ZYW A;  3I33 A;  1LQH A;  5F2R A;  2YC1 C;  2E3G A;  2KBH A;  3C7N A;  4H5T A;  5AQH A;  1T7E A;  1T1T A;  1B3C A;  2V7Z A;  1T7B A;  1ATS A;  1NGG A;  2LI7 A;  1HPM A;  1S3X A;  3LDP A;  5AQN A;  4FSV A;  5AQK A;  1PX9 A;  5F0X A;  1NGF A;  1L4V A;  2QWN A;  5FPN A;  1NRB A;  1T7A A;  2KJA A;  3SF4 D;  1SNB A;  3QML A;  2ATB A;  5BPL A;  2I61 A;  3A8Y A;  4AAZ A;  3GDQ A;  2QW9 A;  3C7N B;  5EVZ A;  5AQJ A;  1JZA A;  3FE1 A;  1JZB A;  1NGB A;  2QWL A;  4HHF A;  1AHO A;  3KC6 A;  2YBR C;  3JXU A;  1I2V A;  5AQO A;  1MR4 A;  3LDQ A;  3KOX A;  1SN4 A;  1DKG D;  4AEI A;  2E3F A;  2LR3 A;  2LJ7 A;  2YIP A;  1NGJ A;  3PSM A;  3ATV A;  3FZH A;  1XRS B;  1ZVG A;  2BUP A;  2NY9 X;  2QWM A;  1NGE A;  3QI7 A;  1JKZ A;  1KV0 A;  4CQK A;  1NH5 A;  2N2R A;  1OMY A;  3D2F A;  3LDN A;  5AQZ A;  1C56 A;  3KOY A;  2QWR A;  2QWO A;  2D56 A;  2E0H A;  2GL1 A;  1NGI A;  1WWN A;  2M8B B;  4KBO A;  5AQV A;  5KK4 A;  5CY0 A;  2N69 A;  4KYP A;  4AB0 A;  2MN5 A;  1ZFU A;  2VY6 A;  5BN8 A;  1LQQ A;  1ZU3 A;  5AR0 A;  3CW4 A;  3BK3 C;  3FZF A;  3QFP A;  3D2F B;  5AQX A;  2LT8 A;  3LDL A;  5AQL A;  3KVG A;  1DQ7 A;  1KAY A;  5EXW A;  5BN9 A;  1JXC A;  5AQY A;  3CQX A;  2QXL A;  1BA0 A;  1NGA A;  1KAZ A;  3E7R L;  1ZYV A;  2A7T A;  1UGL A;  1CN2 A;  2MZ0 A;  3GKU A;  5FPE A;  1NGH A;  2GMO A;  2KBK A;  4UAE F; 
#chains in the Genus database with same CATH homology
 2LY6 A;  3E7U X;  1VNA A;  1NRA A;  1P00 A;  4UJ0 A;  1N4N A;  2KGQ A;  1WMT A;  1DJT A;  4HE7 A;  1BRZ A;  2BRZ A;  1BK8 A;  1NPI A;  1PE4 A;  2N2Q A;  1P0A A;  1I6F A;  1ZVE A;  2LY5 A;  1T0Z A;  1BMR A;  4V1D C;  2KPY A;  2KYQ A;  2LKB A;  1I2U A;  1PTX A;  1AYJ A;  2B68 A;  1NE5 A;  1OZZ A;  2YEO A;  1B7D A;  2LJM A;  1SN1 A;  1ICA A;  2SN3 A;  1I6G A;  1MYN A;  1WT7 A;  2ASC A;  1LQI A;  2B3C A;  1TI5 A;  1VNB A;  1GPS A;  1CHZ A;  2KSK A;  2N66 A;  1SEG A;  1FH3 A;  1ZUT A;  1C55 A;  1BCG A;  2NY8 X;  2KBJ A;  1GPT A;  1ZYW A;  1LQH A;  2YC1 C;  2E3G A;  2KBH A;  1T7E A;  1T1T A;  1B3C A;  1T7B A;  2LI7 A;  1PX9 A;  1L4V A;  1NRB A;  1T7A A;  2KJA A;  1SNB A;  2ATB A;  2I61 A;  4AAZ A;  1JZA A;  1JZB A;  4HHF A;  1AHO A;  2YBR C;  1I2V A;  1MR4 A;  1SN4 A;  4AEI A;  2E3F A;  2LR3 A;  2LJ7 A;  3PSM A;  1ZVG A;  2NY9 X;  1JKZ A;  1KV0 A;  4CQK A;  1NH5 A;  2N2R A;  1OMY A;  1C56 A;  2E0H A;  2GL1 A;  1WWN A;  2M8B B;  5KK4 A;  5CY0 A;  2N69 A;  4KYP A;  4AB0 A;  1ZFU A;  1LQQ A;  1ZU3 A;  2LT8 A;  1DQ7 A;  1JXC A;  1CN2 A;  3E7R L;  1ZYV A;  2A7T A;  2MZ0 A;  2KBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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