4AB0A

X-ray crystal structure of nicotiana alata defensin nad1
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
46
structure length
46
Chain Sequence
ECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Dimerization of Plant Defensin Nad1 Enhances its Antifungal Activity.
pubmed doi rcsb
total genus 11
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4ab0A00
1BCGA 2KJAA 1DQ7A 2YBRC 2KGQA 1SNBA 1T0ZA 1GPSA 1NPIA 2LI7A 1FH3A 2KYQA 2LY6A 1CHZA 3PSMA 1OZZA 1AYJA 5CY0A 1I2UA 3E7RL 1DJTA 2ATBA 1I6GA 1ZYVA 4AB0A 2N66A 2M8BB 1P0AA 1WWNA 1ZU3A 1T7EA 2BRZA 1SEGA 2LJ7A 1T1TA 3E7UX 1B3CA 1LQHA 1SN4A 1VNAA 1LQQA 4V1DC 1ZVEA 2B3CA 1ZFUA 1L4VA 4UJ0A 2LR3A 2LKBA 1JZBA 2NY8X 1B7DA 1KV0A 2N69A 1C55A 4AAZA 4KYPA 1P00A 1BK8A 2ASCA 1MYNA 1N4NA 1ZUTA 5KK4A 2SN3A 2LT8A 2A7TA 4AEIA 1T7AA 1JKZA 1SN1A 2NY9X 2KBHA 1BRZA 2LY5A 2E0HA 2B68A 1PX9A 2N2QA 2I61A 4HE7A 1CN2A 1T7BA 1ZYWA 1PE4A 1LQIA 2KBKA 1I6FA 1BMRA 1I2VA 1C56A 2E3GA 1WT7A 1VNBA 1ZVGA 1NRAA 2E3FA 2YC1C 1JXCA 2LJMA 2N2RA 2GL1A 2KSKA 1AHOA 2KPYA 1TI5A 1NE5A 2MZ0A 2KBJA 1NH5A 1PTXA 4HHFA 1MR4A 1NRBA 4CQKA 1ICAA 2YEOA 1GPTA 1OMYA 1JZAA 1WMTA
chains in the Genus database with same CATH superfamily
1BCGA 2KJAA 2YILA 1DQ7A 2YBRC 5AQWA 1ATSA 2KGQA 3LDPA 5AQMA 1SNBA 1T0ZA 2QWNA 5AQGA 1GPSA 3GL1A 3KOZA 1NPIA 3KP1A 3IUCA 1NGBA 1NGAA 1NGDA 2QXLA 5AQPA 2LI7A 5FPMA 5F2RA 1FH3A 2KYQA 2LY6A 3QMLA 1CHZA 1ATRA 1NGJA 3PSMA 3KC6A 1XRSB 1OZZA 3FZLA 3FZMA 1AYJA 5AQSA 1HPMA 2E2FA 5CY0A 1I2UA 3CW4A 3D2EA 3E7RL 3I33A 2MBKA 1DJTA 1POIA 2ATBA 1I6GA 5AQYA 5EXWA 3KOWA 4H5RA 5BPMA 1NGCA 1ZYVA 3R2VA 3KOXA 3FE1A 4AB0A 1YUWA 2G2KA 2N66A 3CQXA 5AQFA 5AQQA 3L6QA 3M3ZA 2M8BB 5FPNA 5BPLA 1QQOA 3C7NB 1HX1A 1P0AA 1WWNA 1ZU3A 5AQLA 4FL9A 1T7EA 3KOYA 2BRZA 1SEGA 2QWQA 3GDQA 2LJ7A 4KBOA 3L56A 3JXUA 1T1TA 1QQMA 3E7UX 4HWIA 1LQHA 5AQRA 1B3CA 1SN4A 3BK3C 1VNAA 4UAFE 1LQQA 4V1DC 5EVZA 1ZVEA 2B3CA 5AQHA 1ZFUA 1BUPA 5F1XA 1L4VA 4UJ0A 2YIOA 2LR3A 4FSVA 5AQZA 2LKBA 5BN9A 1S3XA 1JZBA 2YIPA 2NY8X 1B7DA 5FPDA 1KV0A 3D2FB 4GNIA 3LDOA 1QQNA 2N69A 5BPNA 1NGEA 1C55A 4AAZA 4H5VA 4KYPA 1BA0A 2JDQD 2LN8A 1P00A 2QWMA 1BK8A 2QWPA 2ASCA 1MYNA 2BUPA 1N4NA 3A8YA 5AQVA 1NGGA 1ZUTA 2E8AA 3KHWA 3QFPA 5KK4A 2GMOA 2SN3A 5AR0A 5F0XA 2MN5A 2LT8A 5FPEA 2A7TA 3LDLA 4AEIA 1NGIA 2QWOA 3FZKA 1T7AA 3GKUA 1JKZA 1K8BA 1SN1A 2NY9X 3LDNA 3QI7A 2KBHA 1BRZA 2LY5A 2QWRA 2E0HA 5AQXA 2B68A 1PX9A 5AQTA 2N2QA 5AQUA 2I61A 3D2EB 3FZFA 4H5TA 4HE7A 1T7BA 1CN2A 1BA1A 3QFUA 5AQNA 1ZYWA 5EX5A 2VY6A 1PE4A 1LQIA 2K35A 1I6FA 2KBKA 3AY9A 1BMRA 1I2VA 1C56A 3L4IA 2E3GA 4IO8A 2D56A 1KAXA 3FZHA 1NGHA 1WT7A 1VNBA 3C7NA 1ZVGA 1NRAA 2E3FA 4H5WA 2E88A 2QWLA 2QW9A 2YC1C 3SF4D 1JXCA 2LJMA 2N2RA 3KVGA 2GL1A 2V7ZA 5AQIA 2KSKA 3ATVA 1AHOA 2KPYA 5AQJA 1KAZA 1TI5A 1NE5A 2MZ0A 1NH5A 2KBJA 5EY4A 1PTXA 1UGLA 1MR4A 1NRBA 4HHFA 4CQKA 1ICAA 1HJOA 2YEOA 3ATUA 1NGFA 5AQKA 3KP0A 4UADE 3LDQA 4H5NA 1KAYA 2KHOA 3HSCA 3D2FA 1GPTA 4UAEF 5AQOA 1DKGD 1OMYA 5BN8A 1JZAA 1WMTA
chains in the Genus database with same CATH topology
1BCGA 2KJAA 1DQ7A 2YBRC 2KGQA 1SNBA 1T0ZA 1GPSA 1NPIA 2LI7A 1FH3A 2KYQA 2LY6A 1CHZA 3PSMA 1OZZA 1AYJA 5CY0A 1I2UA 3E7RL 1DJTA 2ATBA 1I6GA 1ZYVA 4AB0A 2N66A 2M8BB 1P0AA 1WWNA 1ZU3A 1T7EA 2BRZA 1SEGA 2LJ7A 1T1TA 3E7UX 1B3CA 1LQHA 1SN4A 1VNAA 1LQQA 4V1DC 1ZVEA 2B3CA 1ZFUA 1L4VA 4UJ0A 2LR3A 2LKBA 1JZBA 2NY8X 1B7DA 1KV0A 2N69A 1C55A 4AAZA 4KYPA 1P00A 1BK8A 2ASCA 1MYNA 1N4NA 1ZUTA 5KK4A 2SN3A 2LT8A 2A7TA 4AEIA 1T7AA 1JKZA 1SN1A 2NY9X 2KBHA 1BRZA 2LY5A 2E0HA 2B68A 1PX9A 2N2QA 2I61A 4HE7A 1CN2A 1T7BA 1ZYWA 1PE4A 1LQIA 2KBKA 1I6FA 1BMRA 1I2VA 1C56A 2E3GA 1WT7A 1VNBA 1ZVGA 1NRAA 2E3FA 2YC1C 1JXCA 2LJMA 2N2RA 2GL1A 2KSKA 1AHOA 2KPYA 1TI5A 1NE5A 2MZ0A 2KBJA 1NH5A 1PTXA 4HHFA 1MR4A 1NRBA 4CQKA 1ICAA 2YEOA 1GPTA 1OMYA 1JZAA 1WMTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BCG A;  2KJA A;  1DQ7 A;  2YBR C;  2KGQ A;  1SNB A;  1T0Z A;  1GPS A;  1NPI A;  2LI7 A;  1FH3 A;  2KYQ A;  2LY6 A;  1CHZ A;  3PSM A;  1OZZ A;  1AYJ A;  5CY0 A;  1I2U A;  3E7R L;  1DJT A;  2ATB A;  1I6G A;  1ZYV A;  4AB0 A;  2N66 A;  2M8B B;  1P0A A;  1WWN A;  1ZU3 A;  1T7E A;  2BRZ A;  1SEG A;  2LJ7 A;  1T1T A;  3E7U X;  1B3C A;  1LQH A;  1SN4 A;  1VNA A;  1LQQ A;  4V1D C;  1ZVE A;  2B3C A;  1ZFU A;  1L4V A;  4UJ0 A;  2LR3 A;  2LKB A;  1JZB A;  2NY8 X;  1B7D A;  1KV0 A;  2N69 A;  1C55 A;  4AAZ A;  4KYP A;  1P00 A;  1BK8 A;  2ASC A;  1MYN A;  1N4N A;  1ZUT A;  5KK4 A;  2SN3 A;  2LT8 A;  2A7T A;  4AEI A;  1T7A A;  1JKZ A;  1SN1 A;  2NY9 X;  2KBH A;  1BRZ A;  2LY5 A;  2E0H A;  2B68 A;  1PX9 A;  2N2Q A;  2I61 A;  4HE7 A;  1CN2 A;  1T7B A;  1ZYW A;  1PE4 A;  1LQI A;  2KBK A;  1I6F A;  1BMR A;  1I2V A;  1C56 A;  2E3G A;  1WT7 A;  1VNB A;  1ZVG A;  1NRA A;  2E3F A;  2YC1 C;  1JXC A;  2LJM A;  2N2R A;  2GL1 A;  2KSK A;  1AHO A;  2KPY A;  1TI5 A;  1NE5 A;  2MZ0 A;  2KBJ A;  1NH5 A;  1PTX A;  4HHF A;  1MR4 A;  1NRB A;  4CQK A;  1ICA A;  2YEO A;  1GPT A;  1OMY A;  1JZA A;  1WMT A; 
#chains in the Genus database with same CATH topology
 1BCG A;  2KJA A;  2YIL A;  1DQ7 A;  2YBR C;  5AQW A;  1ATS A;  2KGQ A;  3LDP A;  5AQM A;  1SNB A;  1T0Z A;  2QWN A;  5AQG A;  1GPS A;  3GL1 A;  3KOZ A;  1NPI A;  3KP1 A;  3IUC A;  1NGB A;  1NGA A;  1NGD A;  2QXL A;  5AQP A;  2LI7 A;  5FPM A;  5F2R A;  1FH3 A;  2KYQ A;  2LY6 A;  3QML A;  1CHZ A;  1ATR A;  1NGJ A;  3PSM A;  3KC6 A;  1XRS B;  1OZZ A;  3FZL A;  3FZM A;  1AYJ A;  5AQS A;  1HPM A;  2E2F A;  5CY0 A;  1I2U A;  3CW4 A;  3D2E A;  3E7R L;  3I33 A;  2MBK A;  1DJT A;  1POI A;  2ATB A;  1I6G A;  5AQY A;  5EXW A;  3KOW A;  4H5R A;  5BPM A;  1NGC A;  1ZYV A;  3R2V A;  3KOX A;  3FE1 A;  4AB0 A;  1YUW A;  2G2K A;  2N66 A;  3CQX A;  5AQF A;  5AQQ A;  3L6Q A;  3M3Z A;  2M8B B;  5FPN A;  5BPL A;  1QQO A;  3C7N B;  1HX1 A;  1P0A A;  1WWN A;  1ZU3 A;  5AQL A;  4FL9 A;  1T7E A;  3KOY A;  2BRZ A;  1SEG A;  2QWQ A;  3GDQ A;  2LJ7 A;  4KBO A;  3L56 A;  3JXU A;  1T1T A;  1QQM A;  3E7U X;  4HWI A;  1LQH A;  5AQR A;  1B3C A;  1SN4 A;  3BK3 C;  1VNA A;  4UAF E;  1LQQ A;  4V1D C;  5EVZ A;  1ZVE A;  2B3C A;  5AQH A;  1ZFU A;  1BUP A;  5F1X A;  1L4V A;  4UJ0 A;  2YIO A;  2LR3 A;  4FSV A;  5AQZ A;  2LKB A;  5BN9 A;  1S3X A;  1JZB A;  2YIP A;  2NY8 X;  1B7D A;  5FPD A;  1KV0 A;  3D2F B;  4GNI A;  3LDO A;  1QQN A;  2N69 A;  5BPN A;  1NGE A;  1C55 A;  4AAZ A;  4H5V A;  4KYP A;  1BA0 A;  2JDQ D;  2LN8 A;  1P00 A;  2QWM A;  1BK8 A;  2QWP A;  2ASC A;  1MYN A;  2BUP A;  1N4N A;  3A8Y A;  5AQV A;  1NGG A;  1ZUT A;  2E8A A;  3KHW A;  3QFP A;  5KK4 A;  2GMO A;  2SN3 A;  5AR0 A;  5F0X A;  2MN5 A;  2LT8 A;  5FPE A;  2A7T A;  3LDL A;  4AEI A;  1NGI A;  2QWO A;  3FZK A;  1T7A A;  3GKU A;  1JKZ A;  1K8B A;  1SN1 A;  2NY9 X;  3LDN A;  3QI7 A;  2KBH A;  1BRZ A;  2LY5 A;  2QWR A;  2E0H A;  5AQX A;  2B68 A;  1PX9 A;  5AQT A;  2N2Q A;  5AQU A;  2I61 A;  3D2E B;  3FZF A;  4H5T A;  4HE7 A;  1T7B A;  1CN2 A;  1BA1 A;  3QFU A;  5AQN A;  1ZYW A;  5EX5 A;  2VY6 A;  1PE4 A;  1LQI A;  2K35 A;  1I6F A;  2KBK A;  3AY9 A;  1BMR A;  1I2V A;  1C56 A;  3L4I A;  2E3G A;  4IO8 A;  2D56 A;  1KAX A;  3FZH A;  1NGH A;  1WT7 A;  1VNB A;  3C7N A;  1ZVG A;  1NRA A;  2E3F A;  4H5W A;  2E88 A;  2QWL A;  2QW9 A;  2YC1 C;  3SF4 D;  1JXC A;  2LJM A;  2N2R A;  3KVG A;  2GL1 A;  2V7Z A;  5AQI A;  2KSK A;  3ATV A;  1AHO A;  2KPY A;  5AQJ A;  1KAZ A;  1TI5 A;  1NE5 A;  2MZ0 A;  1NH5 A;  2KBJ A;  5EY4 A;  1PTX A;  1UGL A;  1MR4 A;  1NRB A;  4HHF A;  4CQK A;  1ICA A;  1HJO A;  2YEO A;  3ATU A;  1NGF A;  5AQK A;  3KP0 A;  4UAD E;  3LDQ A;  4H5N A;  1KAY A;  2KHO A;  3HSC A;  3D2F A;  1GPT A;  4UAE F;  5AQO A;  1DKG D;  1OMY A;  5BN8 A;  1JZA A;  1WMT A; 
#chains in the Genus database with same CATH homology
 1BCG A;  2KJA A;  1DQ7 A;  2YBR C;  2KGQ A;  1SNB A;  1T0Z A;  1GPS A;  1NPI A;  2LI7 A;  1FH3 A;  2KYQ A;  2LY6 A;  1CHZ A;  3PSM A;  1OZZ A;  1AYJ A;  5CY0 A;  1I2U A;  3E7R L;  1DJT A;  2ATB A;  1I6G A;  1ZYV A;  4AB0 A;  2N66 A;  2M8B B;  1P0A A;  1WWN A;  1ZU3 A;  1T7E A;  2BRZ A;  1SEG A;  2LJ7 A;  1T1T A;  3E7U X;  1B3C A;  1LQH A;  1SN4 A;  1VNA A;  1LQQ A;  4V1D C;  1ZVE A;  2B3C A;  1ZFU A;  1L4V A;  4UJ0 A;  2LR3 A;  2LKB A;  1JZB A;  2NY8 X;  1B7D A;  1KV0 A;  2N69 A;  1C55 A;  4AAZ A;  4KYP A;  1P00 A;  1BK8 A;  2ASC A;  1MYN A;  1N4N A;  1ZUT A;  5KK4 A;  2SN3 A;  2LT8 A;  2A7T A;  4AEI A;  1T7A A;  1JKZ A;  1SN1 A;  2NY9 X;  2KBH A;  1BRZ A;  2LY5 A;  2E0H A;  2B68 A;  1PX9 A;  2N2Q A;  2I61 A;  4HE7 A;  1CN2 A;  1T7B A;  1ZYW A;  1PE4 A;  1LQI A;  2KBK A;  1I6F A;  1BMR A;  1I2V A;  1C56 A;  2E3G A;  1WT7 A;  1VNB A;  1ZVG A;  1NRA A;  2E3F A;  2YC1 C;  1JXC A;  2LJM A;  2N2R A;  2GL1 A;  2KSK A;  1AHO A;  2KPY A;  1TI5 A;  1NE5 A;  2MZ0 A;  2KBJ A;  1NH5 A;  1PTX A;  4HHF A;  1MR4 A;  1NRB A;  4CQK A;  1ICA A;  2YEO A;  1GPT A;  1OMY A;  1JZA A;  1WMT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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