4CQKA

Crystal structure of ligand-bound nad1
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords FLOWER-SPECIFIC DEFENSIN
publication title Phosphoinositide-Mediated Oligomerization of a Defensin Induces Cell Lysis.
pubmed doi rcsb
total genus 14
structure length 47
sequence length 47
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N
ec nomenclature
pdb deposition date 2014-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4cqkA00
2E0HA 1SN4A 1I6FA 4UJ0A 2SN3A 3E7UX 1NRBA 1WT7A 2ATBA 3E7RL 1I6GA 2KYQA 2M8BB 2NY9X 1MR4A 1BMRA 1PX9A 2B3CA 1ZVEA 1T0ZA 2NY8X 1LQIA 4AB0A 1I2UA 4AAZA 2LY6A 1L4VA 2N69A 1VNAA 1P00A 1P0AA 2YEOA 5KK4A 1SN1A 1NPIA 1B7DA 2N2RA 1PE4A 1GPSA 1AYJA 2A7TA 2LY5A 1ZU3A 1CHZA 1BCGA 1DQ7A 1SEGA 2MZ0A 4V1DC 1JKZA 1ZFUA 2LR3A 1NH5A 1T7BA 1ZYWA 1OMYA 2ASCA 1DJTA 4AEIA 4HE7A 1JXCA 1VNBA 2N2QA 1NRAA 2LT8A 1C56A 1JZAA 2KGQA 2E3GA 4HHFA 2I61A 1CN2A 2LKBA 2B68A 2KBJA 2YBRC 1LQHA 1OZZA 1ZYVA 2KJAA 1GPTA 1KV0A 1WWNA 1BK8A 2KPYA 1MYNA 1FH3A 1AHOA 2LJMA 2E3FA 1BRZA 1B3CA 1T1TA 1T7AA 2LI7A 4CQKA 1TI5A 1LQQA 1I2VA 2KSKA 2YC1C 1WMTA 1ZVGA 1T7EA 2LJ7A 1N4NA 3PSMA 1C55A 4KYPA 1NE5A 1JZBA 2N66A 1ZUTA 2BRZA 5CY0A 1PTXA 2KBKA 2KBHA 2GL1A 1ICAA 1SNBA
chains in the Genus database with same CATH superfamily
1QQNA 5AQPA 2E0HA 1SN4A 2QWPA 1I6FA 3ATUA 5AQJA 4UJ0A 2SN3A 2K35A 3E7UX 1NRBA 1WT7A 2ATBA 1K8BA 5AQKA 3E7RL 3LDLA 5AQLA 1I6GA 2KYQA 5EY4A 3L56A 2M8BB 5EX5A 2NY9X 2QWQA 1MR4A 3IUCA 1BMRA 1PX9A 1NGCA 1NGGA 1XRSB 2B3CA 1ZVEA 2QXLA 1T0ZA 2NY8X 1LQIA 5AQSA 4AB0A 1I2UA 5AQUA 3JXUA 3BK3C 1HX1A 1NGDA 4AAZA 2LY6A 1KAYA 1L4VA 3R2VA 4H5VA 1POIA 3FZMA 2YIOA 2N69A 1VNAA 1NGAA 1P00A 5F1XA 1P0AA 2YEOA 3CQXA 3D2EA 1SN1A 5KK4A 1NPIA 3GL1A 1B7DA 5AQRA 3M3ZA 3LDPA 2MN5A 1DKGD 5AQVA 5F0XA 2V7ZA 2N2RA 5AQGA 5BPMA 1PE4A 3C7NB 4H5TA 1GPSA 1KAZA 1AYJA 2A7TA 2LY5A 1ZU3A 1CHZA 1BCGA 4IO8A 3QMLA 5FPMA 1DQ7A 1SEGA 2MZ0A 4HWIA 4V1DC 1JKZA 1ZFUA 2LR3A 5AQYA 1NH5A 1HJOA 1T7BA 1ZYWA 3LDOA 3QFPA 5AQTA 4UADE 1OMYA 2JDQD 4UAFE 5BPLA 2ASCA 1ATSA 3KOYA 4FSVA 1DJTA 1NGHA 3FZHA 4GNIA 4AEIA 2E88A 1NGBA 3LDNA 4HE7A 4H5RA 1JXCA 1VNBA 5EVZA 2N2QA 2BUPA 5FPEA 1NRAA 1NGIA 2LT8A 1C56A 3I33A 4H5NA 1HPMA 2QWMA 1JZAA 2KGQA 1KAXA 2E3GA 4HHFA 5AQXA 5F2RA 2YILA 2I61A 1S3XA 1CN2A 2LKBA 4KBOA 1BA1A 2B68A 2KBJA 5BN8A 2QWNA 2YBRC 1LQHA 1OZZA 5AQFA 3L6QA 5AQQA 3FZFA 1ZYVA 2KJAA 5BN9A 5AQZA 1GPTA 1KV0A 1WWNA 2QWOA 1BK8A 1UGLA 1MYNA 2KPYA 1AHOA 2LJMA 2QWLA 3D2EB 1FH3A 2E3FA 1BRZA 3FZKA 1B3CA 5AQNA 1BA0A 3KC6A 3D2FA 3KP0A 1T1TA 1T7AA 3L4IA 1ATRA 2LI7A 4CQKA 2GMOA 2VY6A 3SF4D 1TI5A 1LQQA 1I2VA 2KSKA 5FPDA 2YC1C 3QFUA 1WMTA 5AQIA 1ZVGA 3HSCA 2YIPA 5FPNA 1T7EA 4H5WA 5BPNA 3GDQA 1NGJA 2LJ7A 1N4NA 1QQOA 3CW4A 3KVGA 3D2FB 3FE1A 3PSMA 2QWRA 5AQWA 2D56A 1C55A 3ATVA 4FL9A 2G2KA 3KOWA 4KYPA 1NE5A 1JZBA 1BUPA 3A8YA 3AY9A 2N66A 1ZUTA 1NGEA 1QQMA 2QW9A 2BRZA 3C7NA 5AQMA 1YUWA 5AQOA 5CY0A 2KHOA 2LN8A 3KOZA 5AQHA 3KP1A 2MBKA 1PTXA 3GKUA 2KBKA 2KBHA 3FZLA 3KOXA 3LDQA 3QI7A 4UAEF 5AR0A 5EXWA 2E2FA 2GL1A 2E8AA 1ICAA 3KHWA 1NGFA 1SNBA
chains in the Genus database with same CATH topology
2E0HA 1SN4A 1I6FA 4UJ0A 2SN3A 3E7UX 1NRBA 1WT7A 2ATBA 3E7RL 1I6GA 2KYQA 2M8BB 2NY9X 1MR4A 1BMRA 1PX9A 2B3CA 1ZVEA 1T0ZA 2NY8X 1LQIA 4AB0A 1I2UA 4AAZA 2LY6A 1L4VA 2N69A 1VNAA 1P00A 1P0AA 2YEOA 5KK4A 1SN1A 1NPIA 1B7DA 2N2RA 1PE4A 1GPSA 1AYJA 2A7TA 2LY5A 1ZU3A 1CHZA 1BCGA 1DQ7A 1SEGA 2MZ0A 4V1DC 1JKZA 1ZFUA 2LR3A 1NH5A 1T7BA 1ZYWA 1OMYA 2ASCA 1DJTA 4AEIA 4HE7A 1JXCA 1VNBA 2N2QA 1NRAA 2LT8A 1C56A 1JZAA 2KGQA 2E3GA 4HHFA 2I61A 1CN2A 2LKBA 2B68A 2KBJA 2YBRC 1LQHA 1OZZA 1ZYVA 2KJAA 1GPTA 1KV0A 1WWNA 1BK8A 2KPYA 1MYNA 1FH3A 1AHOA 2LJMA 2E3FA 1BRZA 1B3CA 1T1TA 1T7AA 2LI7A 4CQKA 1TI5A 1LQQA 1I2VA 2KSKA 2YC1C 1WMTA 1ZVGA 1T7EA 2LJ7A 1N4NA 3PSMA 1C55A 4KYPA 1NE5A 1JZBA 2N66A 1ZUTA 2BRZA 5CY0A 1PTXA 2KBKA 2KBHA 2GL1A 1ICAA 1SNBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E0H A;  1SN4 A;  1I6F A;  4UJ0 A;  2SN3 A;  3E7U X;  1NRB A;  1WT7 A;  2ATB A;  3E7R L;  1I6G A;  2KYQ A;  2M8B B;  2NY9 X;  1MR4 A;  1BMR A;  1PX9 A;  2B3C A;  1ZVE A;  1T0Z A;  2NY8 X;  1LQI A;  4AB0 A;  1I2U A;  4AAZ A;  2LY6 A;  1L4V A;  2N69 A;  1VNA A;  1P00 A;  1P0A A;  2YEO A;  5KK4 A;  1SN1 A;  1NPI A;  1B7D A;  2N2R A;  1PE4 A;  1GPS A;  1AYJ A;  2A7T A;  2LY5 A;  1ZU3 A;  1CHZ A;  1BCG A;  1DQ7 A;  1SEG A;  2MZ0 A;  4V1D C;  1JKZ A;  1ZFU A;  2LR3 A;  1NH5 A;  1T7B A;  1ZYW A;  1OMY A;  2ASC A;  1DJT A;  4AEI A;  4HE7 A;  1JXC A;  1VNB A;  2N2Q A;  1NRA A;  2LT8 A;  1C56 A;  1JZA A;  2KGQ A;  2E3G A;  4HHF A;  2I61 A;  1CN2 A;  2LKB A;  2B68 A;  2KBJ A;  2YBR C;  1LQH A;  1OZZ A;  1ZYV A;  2KJA A;  1GPT A;  1KV0 A;  1WWN A;  1BK8 A;  2KPY A;  1MYN A;  1FH3 A;  1AHO A;  2LJM A;  2E3F A;  1BRZ A;  1B3C A;  1T1T A;  1T7A A;  2LI7 A;  4CQK A;  1TI5 A;  1LQQ A;  1I2V A;  2KSK A;  2YC1 C;  1WMT A;  1ZVG A;  1T7E A;  2LJ7 A;  1N4N A;  3PSM A;  1C55 A;  4KYP A;  1NE5 A;  1JZB A;  2N66 A;  1ZUT A;  2BRZ A;  5CY0 A;  1PTX A;  2KBK A;  2KBH A;  2GL1 A;  1ICA A;  1SNB A; 
#chains in the Genus database with same CATH topology
 1QQN A;  5AQP A;  2E0H A;  1SN4 A;  2QWP A;  1I6F A;  3ATU A;  5AQJ A;  4UJ0 A;  2SN3 A;  2K35 A;  3E7U X;  1NRB A;  1WT7 A;  2ATB A;  1K8B A;  5AQK A;  3E7R L;  3LDL A;  5AQL A;  1I6G A;  2KYQ A;  5EY4 A;  3L56 A;  2M8B B;  5EX5 A;  2NY9 X;  2QWQ A;  1MR4 A;  3IUC A;  1BMR A;  1PX9 A;  1NGC A;  1NGG A;  1XRS B;  2B3C A;  1ZVE A;  2QXL A;  1T0Z A;  2NY8 X;  1LQI A;  5AQS A;  4AB0 A;  1I2U A;  5AQU A;  3JXU A;  3BK3 C;  1HX1 A;  1NGD A;  4AAZ A;  2LY6 A;  1KAY A;  1L4V A;  3R2V A;  4H5V A;  1POI A;  3FZM A;  2YIO A;  2N69 A;  1VNA A;  1NGA A;  1P00 A;  5F1X A;  1P0A A;  2YEO A;  3CQX A;  3D2E A;  1SN1 A;  5KK4 A;  1NPI A;  3GL1 A;  1B7D A;  5AQR A;  3M3Z A;  3LDP A;  2MN5 A;  1DKG D;  5AQV A;  5F0X A;  2V7Z A;  2N2R A;  5AQG A;  5BPM A;  1PE4 A;  3C7N B;  4H5T A;  1GPS A;  1KAZ A;  1AYJ A;  2A7T A;  2LY5 A;  1ZU3 A;  1CHZ A;  1BCG A;  4IO8 A;  3QML A;  5FPM A;  1DQ7 A;  1SEG A;  2MZ0 A;  4HWI A;  4V1D C;  1JKZ A;  1ZFU A;  2LR3 A;  5AQY A;  1NH5 A;  1HJO A;  1T7B A;  1ZYW A;  3LDO A;  3QFP A;  5AQT A;  4UAD E;  1OMY A;  2JDQ D;  4UAF E;  5BPL A;  2ASC A;  1ATS A;  3KOY A;  4FSV A;  1DJT A;  1NGH A;  3FZH A;  4GNI A;  4AEI A;  2E88 A;  1NGB A;  3LDN A;  4HE7 A;  4H5R A;  1JXC A;  1VNB A;  5EVZ A;  2N2Q A;  2BUP A;  5FPE A;  1NRA A;  1NGI A;  2LT8 A;  1C56 A;  3I33 A;  4H5N A;  1HPM A;  2QWM A;  1JZA A;  2KGQ A;  1KAX A;  2E3G A;  4HHF A;  5AQX A;  5F2R A;  2YIL A;  2I61 A;  1S3X A;  1CN2 A;  2LKB A;  4KBO A;  1BA1 A;  2B68 A;  2KBJ A;  5BN8 A;  2QWN A;  2YBR C;  1LQH A;  1OZZ A;  5AQF A;  3L6Q A;  5AQQ A;  3FZF A;  1ZYV A;  2KJA A;  5BN9 A;  5AQZ A;  1GPT A;  1KV0 A;  1WWN A;  2QWO A;  1BK8 A;  1UGL A;  1MYN A;  2KPY A;  1AHO A;  2LJM A;  2QWL A;  3D2E B;  1FH3 A;  2E3F A;  1BRZ A;  3FZK A;  1B3C A;  5AQN A;  1BA0 A;  3KC6 A;  3D2F A;  3KP0 A;  1T1T A;  1T7A A;  3L4I A;  1ATR A;  2LI7 A;  4CQK A;  2GMO A;  2VY6 A;  3SF4 D;  1TI5 A;  1LQQ A;  1I2V A;  2KSK A;  5FPD A;  2YC1 C;  3QFU A;  1WMT A;  5AQI A;  1ZVG A;  3HSC A;  2YIP A;  5FPN A;  1T7E A;  4H5W A;  5BPN A;  3GDQ A;  1NGJ A;  2LJ7 A;  1N4N A;  1QQO A;  3CW4 A;  3KVG A;  3D2F B;  3FE1 A;  3PSM A;  2QWR A;  5AQW A;  2D56 A;  1C55 A;  3ATV A;  4FL9 A;  2G2K A;  3KOW A;  4KYP A;  1NE5 A;  1JZB A;  1BUP A;  3A8Y A;  3AY9 A;  2N66 A;  1ZUT A;  1NGE A;  1QQM A;  2QW9 A;  2BRZ A;  3C7N A;  5AQM A;  1YUW A;  5AQO A;  5CY0 A;  2KHO A;  2LN8 A;  3KOZ A;  5AQH A;  3KP1 A;  2MBK A;  1PTX A;  3GKU A;  2KBK A;  2KBH A;  3FZL A;  3KOX A;  3LDQ A;  3QI7 A;  4UAE F;  5AR0 A;  5EXW A;  2E2F A;  2GL1 A;  2E8A A;  1ICA A;  3KHW A;  1NGF A;  1SNB A; 
#chains in the Genus database with same CATH homology
 2E0H A;  1SN4 A;  1I6F A;  4UJ0 A;  2SN3 A;  3E7U X;  1NRB A;  1WT7 A;  2ATB A;  3E7R L;  1I6G A;  2KYQ A;  2M8B B;  2NY9 X;  1MR4 A;  1BMR A;  1PX9 A;  2B3C A;  1ZVE A;  1T0Z A;  2NY8 X;  1LQI A;  4AB0 A;  1I2U A;  4AAZ A;  2LY6 A;  1L4V A;  2N69 A;  1VNA A;  1P00 A;  1P0A A;  2YEO A;  5KK4 A;  1SN1 A;  1NPI A;  1B7D A;  2N2R A;  1PE4 A;  1GPS A;  1AYJ A;  2A7T A;  2LY5 A;  1ZU3 A;  1CHZ A;  1BCG A;  1DQ7 A;  1SEG A;  2MZ0 A;  4V1D C;  1JKZ A;  1ZFU A;  2LR3 A;  1NH5 A;  1T7B A;  1ZYW A;  1OMY A;  2ASC A;  1DJT A;  4AEI A;  4HE7 A;  1JXC A;  1VNB A;  2N2Q A;  1NRA A;  2LT8 A;  1C56 A;  1JZA A;  2KGQ A;  2E3G A;  4HHF A;  2I61 A;  1CN2 A;  2LKB A;  2B68 A;  2KBJ A;  2YBR C;  1LQH A;  1OZZ A;  1ZYV A;  2KJA A;  1GPT A;  1KV0 A;  1WWN A;  1BK8 A;  2KPY A;  1MYN A;  1FH3 A;  1AHO A;  2LJM A;  2E3F A;  1BRZ A;  1B3C A;  1T1T A;  1T7A A;  2LI7 A;  4CQK A;  1TI5 A;  1LQQ A;  1I2V A;  2KSK A;  2YC1 C;  1WMT A;  1ZVG A;  1T7E A;  2LJ7 A;  1N4N A;  3PSM A;  1C55 A;  4KYP A;  1NE5 A;  1JZB A;  2N66 A;  1ZUT A;  2BRZ A;  5CY0 A;  1PTX A;  2KBK A;  2KBH A;  2GL1 A;  1ICA A;  1SNB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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