1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
molecule tags Lyase
molecule keywords PROTEIN (PECTATE LYASE)
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
4EW9A 3SUCA 2PYGA 4YEJA 2O1DA 2X6XA 3B90A 2X85A 1O8KA 4XKWA 4Z06A 2EWEA 4XLCA 1IDJA 2BSPA 4OZZA 2INUA 2NTQA 3ZPPA 1PXZA 4MXNA 4OJ6A 3GQ7A 4W8QA 1O8HA 3JURA 3VSTA 4HWVA 2NSTA 4I84A 3B4NA 4XL9A 2QY1A 2PYHA 3WWGA 3VSUA 2O0WA 1BHEA 2QXZA 4XM3A 1AIRA 3VSVA 1OFMA 1WMRA 3KRGA 1IB4A 4XOPA 1O8GA 2NSPA 1PE9A 4XNFA 1XG2A 2NT9A 2UVFA 4XORA 1O8LA 3EQNA 4OJOA 4XLEA 1VBLA 4PMHA 2ODLA 1OGMX 2VBKA 4Z03A 3ZSCA 1QJVA 4U49A 1RWRA 2X3HA 4YZXA 2VBMA 3EQOA 1JRGA 4NK6A 4YZ0A 3GRHA 1PLUA 2VJIA 3LMWA 4YZQA 4XMYA 3T9GA 3VMVA 1OOCA 1O8FA 2VJJA 4OJPA 3GQAA 4XLHA 1DBGA 4XKVA 2UVEA 1RU4A 3GQ9A 4XLFA 1DBOA 4U4BA 1K5CA 3FY3A 2NTPA 4W8RA 4MR0A 4XN3A 4OJ5A 1RMGA 4XQFA 2NTBA 1GQ8A 1O8JA 2NT6A 4XONA 3VMWA 1QCXA 4C2LA 4XOTA 1OFLA 2VBEA 4OJLA 4W8SA 4AVZA 1EE6A 1H80A 4YELA 2O0VA 4XR6A 1KCDA 3GQ8A 4URRA 1IA5A 1NHCA 2PECA 4Z05A 1BN8A 1KTWA 2QX3A 4YZAA 1JTAA 4OZYA 3UW0A 1KCCA 1HG8A 1O88A 1O8DA 1IDKA 4W8TA 2INVA 1O8EA 2X6WA 4XLAA 2Z8GA 5C1CA 5C1EA 2NZMA 5AMVA 4NK8A 1CZFA 2X6YA 1X0CA 4XN0A 1O8IA 1OGOX 2O17A 2O04A 3B8YA 1O8MA 2IQ7A
chains in the Genus database with same CATH superfamily
4EW9A 1QRCA 3SUCA 2PYGA 4YEJA 2O1DA 3SZEA 1QA3A 4V02C 1TYVA 2BX6A 1LLZA 2X6XA 3B90A 2VFMA 2G0YA 2X85A 1O8KA 2XTYA 1L1IA 3BH6B 4XKWA 4YFOA 2EWEA 4Z06A 3BH7B 4XLCA 1HF2A 1IDJA 2BSPA 3NB2A 4OZZA 1EZGA 2INUA 2NTQA 3ZPPA 1PXZA 4MXNA 4OJ6A 3GQ7A 4W8QA 1O8HA 3JURA 3ML3A 5DNSA 3VSTA 4HWVA 2BM6A 2NSTA 1LM1A 4YC5A 2B0RA 4I84A 2XT4A 3B4NA 1CLWA 4XL9A 2QY1A 2PYHA 3SY2A 3WWGA 2W7ZA 3VSUA 2O0WA 1BHEA 3PETA 2QXZA 4OPWA 4XM3A 1QA1A 1AIRA 1TYUA 3VSVA 2VFNA 1OFMA 2J8KA 1WMRA 3LYCA 3KRGA 1IB4A 2XTXA 2XT2A 1O8GA 4XOPA 2NSPA 2XTWA 1PE9A 4XNFA 3JX8A 4YEIA 1XG2A 2NT9A 2UVFA 4XORA 3LJYA 2BM4A 5JLVC 1O8LA 3EQNA 4OJOA 4XLEA 1QA2A 2J8IA 3H09A 2QYUA 1VBLA 4PMHA 1TSPA 2ODLA 1OGMX 1WXRA 2VBKA 4Z03A 3DU1X 3N90A 4OM9A 3ZSCA 1QJVA 4U49A 1RWRA 2X3HA 4YZXA 3PSSA 2VBMA 1JRGA 3EQOA 4NK6A 4YZ0A 3AK5A 2YUHA 1PLUA 2VJIA 3GRHA 3LMWA 4XMYA 4YZQA 2BM7A 5JMCB 3PSZA 3T9GA 3VMVA 1OOCA 1O8FA 2VJJA 4OJPA 3GQAA 3SYJA 4XLHA 1DBGA 4XKVA 1TYXA 2UVEA 1RU4A 1K8FA 3GQ9A 4XLFA 3SQVA 1DBOA 4U4BA 1K5CA 1QRBA 1DABA 1EA0A 3FY3A 1QQ1A 2NTPA 4W8RA 4MR0A 4XN3A 2QZAA 4OJ5A 2VFQA 2XC1A 1RMGA 4XQFA 2NTBA 1GQ8A 1O8JA 2NT6A 4XONA 3VMWA 1QCXA 4C2LA 4XOTA 4YCQA 1OFLA 2VBEA 2IOUG 4OJLA 4W8SA 4AVZA 1EE6A 3RIQA 2F3LA 1H80A 2O6WA 2O0VA 1K4ZA 4JRAC 4XR6A 4YELA 1KCDA 3GQ8A 4YDTA 2VFOA 3NAWA 4URRA 1IA5A 1NHCA 1OFEA 2PECA 4Z05A 1BN8A 1KTWA 2QX3A 4YZAA 1JTAA 4OZYA 1OFDA 3UW0A 1KCCA 2VFPA 1HG8A 1O88A 1O8DA 1IDKA 4W8TA 2INVA 1O8EA 2X6WA 4XLAA 2Z8GA 4KH3A 3N6ZA 3P4GA 1LLWA 5C1CA 5C1EA 2NZMA 5AMVA 4NK8A 1CZFA 1KQ5A 2X6YA 1X0CA 2BM5A 1O8IA 4XN0A 1OGOX 2O17A 3TH0A 2O04A 1TYWA 3B8YA 1O8MA 2V5IA 2IQ7A
chains in the Genus database with same CATH topology
4EW9A 3SUCA 2PYGA 4YEJA 2O1DA 2X6XA 3B90A 2X85A 1O8KA 4XKWA 4Z06A 2EWEA 4XLCA 1IDJA 2BSPA 4OZZA 2INUA 2NTQA 3ZPPA 1PXZA 4MXNA 4OJ6A 3GQ7A 4W8QA 1O8HA 3JURA 3VSTA 4HWVA 2NSTA 4I84A 3B4NA 4XL9A 2QY1A 2PYHA 3WWGA 3VSUA 2O0WA 1BHEA 2QXZA 4XM3A 1AIRA 3VSVA 1OFMA 1WMRA 3KRGA 1IB4A 4XOPA 1O8GA 2NSPA 1PE9A 4XNFA 1XG2A 2NT9A 2UVFA 4XORA 1O8LA 3EQNA 4OJOA 4XLEA 1VBLA 4PMHA 2ODLA 1OGMX 2VBKA 4Z03A 3ZSCA 1QJVA 4U49A 1RWRA 2X3HA 4YZXA 2VBMA 3EQOA 1JRGA 4NK6A 4YZ0A 3GRHA 1PLUA 2VJIA 3LMWA 4YZQA 4XMYA 3T9GA 3VMVA 1OOCA 1O8FA 2VJJA 4OJPA 3GQAA 4XLHA 1DBGA 4XKVA 2UVEA 1RU4A 3GQ9A 4XLFA 1DBOA 4U4BA 1K5CA 3FY3A 2NTPA 4W8RA 4MR0A 4XN3A 4OJ5A 1RMGA 4XQFA 2NTBA 1GQ8A 1O8JA 2NT6A 4XONA 3VMWA 1QCXA 4C2LA 4XOTA 1OFLA 2VBEA 4OJLA 4W8SA 4AVZA 1EE6A 1H80A 4YELA 2O0VA 4XR6A 1KCDA 3GQ8A 4URRA 1IA5A 1NHCA 2PECA 4Z05A 1BN8A 1KTWA 2QX3A 4YZAA 1JTAA 4OZYA 3UW0A 1KCCA 1HG8A 1O88A 1O8DA 1IDKA 4W8TA 2INVA 1O8EA 2X6WA 4XLAA 2Z8GA 5C1CA 5C1EA 2NZMA 5AMVA 4NK8A 1CZFA 2X6YA 1X0CA 4XN0A 1O8IA 1OGOX 2O17A 2O04A 3B8YA 1O8MA 2IQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EW9 A;  3SUC A;  2PYG A;  4YEJ A;  2O1D A;  2X6X A;  3B90 A;  2X85 A;  1O8K A;  4XKW A;  4Z06 A;  2EWE A;  4XLC A;  1IDJ A;  2BSP A;  4OZZ A;  2INU A;  2NTQ A;  3ZPP A;  1PXZ A;  4MXN A;  4OJ6 A;  3GQ7 A;  4W8Q A;  1O8H A;  3JUR A;  3VST A;  4HWV A;  2NST A;  4I84 A;  3B4N A;  4XL9 A;  2QY1 A;  2PYH A;  3WWG A;  3VSU A;  2O0W A;  1BHE A;  2QXZ A;  4XM3 A;  1AIR A;  3VSV A;  1OFM A;  1WMR A;  3KRG A;  1IB4 A;  4XOP A;  1O8G A;  2NSP A;  1PE9 A;  4XNF A;  1XG2 A;  2NT9 A;  2UVF A;  4XOR A;  1O8L A;  3EQN A;  4OJO A;  4XLE A;  1VBL A;  4PMH A;  2ODL A;  1OGM X;  2VBK A;  4Z03 A;  3ZSC A;  1QJV A;  4U49 A;  1RWR A;  2X3H A;  4YZX A;  2VBM A;  3EQO A;  1JRG A;  4NK6 A;  4YZ0 A;  3GRH A;  1PLU A;  2VJI A;  3LMW A;  4YZQ A;  4XMY A;  3T9G A;  3VMV A;  1OOC A;  1O8F A;  2VJJ A;  4OJP A;  3GQA A;  4XLH A;  1DBG A;  4XKV A;  2UVE A;  1RU4 A;  3GQ9 A;  4XLF A;  1DBO A;  4U4B A;  1K5C A;  3FY3 A;  2NTP A;  4W8R A;  4MR0 A;  4XN3 A;  4OJ5 A;  1RMG A;  4XQF A;  2NTB A;  1GQ8 A;  1O8J A;  2NT6 A;  4XON A;  3VMW A;  1QCX A;  4C2L A;  4XOT A;  1OFL A;  2VBE A;  4OJL A;  4W8S A;  4AVZ A;  1EE6 A;  1H80 A;  4YEL A;  2O0V A;  4XR6 A;  1KCD A;  3GQ8 A;  4URR A;  1IA5 A;  1NHC A;  2PEC A;  4Z05 A;  1BN8 A;  1KTW A;  2QX3 A;  4YZA A;  1JTA A;  4OZY A;  3UW0 A;  1KCC A;  1HG8 A;  1O88 A;  1O8D A;  1IDK A;  4W8T A;  2INV A;  1O8E A;  2X6W A;  4XLA A;  2Z8G A;  5C1C A;  5C1E A;  2NZM A;  5AMV A;  4NK8 A;  1CZF A;  2X6Y A;  1X0C A;  4XN0 A;  1O8I A;  1OGO X;  2O17 A;  2O04 A;  3B8Y A;  1O8M A;  2IQ7 A; 
#chains in the Genus database with same CATH topology
 4EW9 A;  1QRC A;  3SUC A;  2PYG A;  4YEJ A;  2O1D A;  3SZE A;  1QA3 A;  4V02 C;  1TYV A;  2BX6 A;  1LLZ A;  2X6X A;  3B90 A;  2VFM A;  2G0Y A;  2X85 A;  1O8K A;  2XTY A;  1L1I A;  3BH6 B;  4XKW A;  4YFO A;  2EWE A;  4Z06 A;  3BH7 B;  4XLC A;  1HF2 A;  1IDJ A;  2BSP A;  3NB2 A;  4OZZ A;  1EZG A;  2INU A;  2NTQ A;  3ZPP A;  1PXZ A;  4MXN A;  4OJ6 A;  3GQ7 A;  4W8Q A;  1O8H A;  3JUR A;  3ML3 A;  5DNS A;  3VST A;  4HWV A;  2BM6 A;  2NST A;  1LM1 A;  4YC5 A;  2B0R A;  4I84 A;  2XT4 A;  3B4N A;  1CLW A;  4XL9 A;  2QY1 A;  2PYH A;  3SY2 A;  3WWG A;  2W7Z A;  3VSU A;  2O0W A;  1BHE A;  3PET A;  2QXZ A;  4OPW A;  4XM3 A;  1QA1 A;  1AIR A;  1TYU A;  3VSV A;  2VFN A;  1OFM A;  2J8K A;  1WMR A;  3LYC A;  3KRG A;  1IB4 A;  2XTX A;  2XT2 A;  1O8G A;  4XOP A;  2NSP A;  2XTW A;  1PE9 A;  4XNF A;  3JX8 A;  4YEI A;  1XG2 A;  2NT9 A;  2UVF A;  4XOR A;  3LJY A;  2BM4 A;  5JLV C;  1O8L A;  3EQN A;  4OJO A;  4XLE A;  1QA2 A;  2J8I A;  3H09 A;  2QYU A;  1VBL A;  4PMH A;  1TSP A;  2ODL A;  1OGM X;  1WXR A;  2VBK A;  4Z03 A;  3DU1 X;  3N90 A;  4OM9 A;  3ZSC A;  1QJV A;  4U49 A;  1RWR A;  2X3H A;  4YZX A;  3PSS A;  2VBM A;  1JRG A;  3EQO A;  4NK6 A;  4YZ0 A;  3AK5 A;  2YUH A;  1PLU A;  2VJI A;  3GRH A;  3LMW A;  4XMY A;  4YZQ A;  2BM7 A;  5JMC B;  3PSZ A;  3T9G A;  3VMV A;  1OOC A;  1O8F A;  2VJJ A;  4OJP A;  3GQA A;  3SYJ A;  4XLH A;  1DBG A;  4XKV A;  1TYX A;  2UVE A;  1RU4 A;  1K8F A;  3GQ9 A;  4XLF A;  3SQV A;  1DBO A;  4U4B A;  1K5C A;  1QRB A;  1DAB A;  1EA0 A;  3FY3 A;  1QQ1 A;  2NTP A;  4W8R A;  4MR0 A;  4XN3 A;  2QZA A;  4OJ5 A;  2VFQ A;  2XC1 A;  1RMG A;  4XQF A;  2NTB A;  1GQ8 A;  1O8J A;  2NT6 A;  4XON A;  3VMW A;  1QCX A;  4C2L A;  4XOT A;  4YCQ A;  1OFL A;  2VBE A;  2IOU G;  4OJL A;  4W8S A;  4AVZ A;  1EE6 A;  3RIQ A;  2F3L A;  1H80 A;  2O6W A;  2O0V A;  1K4Z A;  4JRA C;  4XR6 A;  4YEL A;  1KCD A;  3GQ8 A;  4YDT A;  2VFO A;  3NAW A;  4URR A;  1IA5 A;  1NHC A;  1OFE A;  2PEC A;  4Z05 A;  1BN8 A;  1KTW A;  2QX3 A;  4YZA A;  1JTA A;  4OZY A;  1OFD A;  3UW0 A;  1KCC A;  2VFP A;  1HG8 A;  1O88 A;  1O8D A;  1IDK A;  4W8T A;  2INV A;  1O8E A;  2X6W A;  4XLA A;  2Z8G A;  4KH3 A;  3N6Z A;  3P4G A;  1LLW A;  5C1C A;  5C1E A;  2NZM A;  5AMV A;  4NK8 A;  1CZF A;  1KQ5 A;  2X6Y A;  1X0C A;  2BM5 A;  1O8I A;  4XN0 A;  1OGO X;  2O17 A;  3TH0 A;  2O04 A;  1TYW A;  3B8Y A;  1O8M A;  2V5I A;  2IQ7 A; 
#chains in the Genus database with same CATH homology
 4EW9 A;  3SUC A;  2PYG A;  4YEJ A;  2O1D A;  2X6X A;  3B90 A;  2X85 A;  1O8K A;  4XKW A;  4Z06 A;  2EWE A;  4XLC A;  1IDJ A;  2BSP A;  4OZZ A;  2INU A;  2NTQ A;  3ZPP A;  1PXZ A;  4MXN A;  4OJ6 A;  3GQ7 A;  4W8Q A;  1O8H A;  3JUR A;  3VST A;  4HWV A;  2NST A;  4I84 A;  3B4N A;  4XL9 A;  2QY1 A;  2PYH A;  3WWG A;  3VSU A;  2O0W A;  1BHE A;  2QXZ A;  4XM3 A;  1AIR A;  3VSV A;  1OFM A;  1WMR A;  3KRG A;  1IB4 A;  4XOP A;  1O8G A;  2NSP A;  1PE9 A;  4XNF A;  1XG2 A;  2NT9 A;  2UVF A;  4XOR A;  1O8L A;  3EQN A;  4OJO A;  4XLE A;  1VBL A;  4PMH A;  2ODL A;  1OGM X;  2VBK A;  4Z03 A;  3ZSC A;  1QJV A;  4U49 A;  1RWR A;  2X3H A;  4YZX A;  2VBM A;  3EQO A;  1JRG A;  4NK6 A;  4YZ0 A;  3GRH A;  1PLU A;  2VJI A;  3LMW A;  4YZQ A;  4XMY A;  3T9G A;  3VMV A;  1OOC A;  1O8F A;  2VJJ A;  4OJP A;  3GQA A;  4XLH A;  1DBG A;  4XKV A;  2UVE A;  1RU4 A;  3GQ9 A;  4XLF A;  1DBO A;  4U4B A;  1K5C A;  3FY3 A;  2NTP A;  4W8R A;  4MR0 A;  4XN3 A;  4OJ5 A;  1RMG A;  4XQF A;  2NTB A;  1GQ8 A;  1O8J A;  2NT6 A;  4XON A;  3VMW A;  1QCX A;  4C2L A;  4XOT A;  1OFL A;  2VBE A;  4OJL A;  4W8S A;  4AVZ A;  1EE6 A;  1H80 A;  4YEL A;  2O0V A;  4XR6 A;  1KCD A;  3GQ8 A;  4URR A;  1IA5 A;  1NHC A;  2PEC A;  4Z05 A;  1BN8 A;  1KTW A;  2QX3 A;  4YZA A;  1JTA A;  4OZY A;  3UW0 A;  1KCC A;  1HG8 A;  1O88 A;  1O8D A;  1IDK A;  4W8T A;  2INV A;  1O8E A;  2X6W A;  4XLA A;  2Z8G A;  5C1C A;  5C1E A;  2NZM A;  5AMV A;  4NK8 A;  1CZF A;  2X6Y A;  1X0C A;  4XN0 A;  1O8I A;  1OGO X;  2O17 A;  2O04 A;  3B8Y A;  1O8M A;  2IQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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