1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
molecule tags Lyase
molecule keywords PROTEIN (PECTATE LYASE)
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
4XR6A 2VBMA 3KRGA 1IDKA 1GQ8A 1JRGA 3VSUA 3SUCA 1K5CA 1KTWA 4W8TA 4XM3A 1WMRA 3B90A 2NTQA 4MR0A 3VSVA 1QJVA 1NHCA 4NK6A 4XKVA 4HWVA 1X0CA 1O8KA 1O8HA 3GQ9A 4URRA 4XL9A 1RWRA 1O8MA 4OZZA 1O8JA 4U49A 4YZQA 2O0VA 4YELA 3VMWA 2X6WA 4XOPA 2X6XA 3B4NA 1KCDA 2NTPA 2PYHA 3GQ8A 1RMGA 3GQ7A 2PECA 1VBLA 1JTAA 3B8YA 2Z8GA 3UW0A 2NSTA 1BHEA 2INVA 4Z05A 2O17A 2EWEA 4PMHA 4YEJA 1O88A 4OJLA 4YZXA 1OFMA 2BSPA 2IQ7A 2UVFA 5AMVA 2X85A 3EQNA 4MXNA 2NSPA 2VBKA 4XLCA 4U4BA 4EW9A 1DBOA 4OJOA 1XG2A 1KCCA 3VSTA 1O8DA 4XORA 4XMYA 4XQFA 3T9GA 2O04A 3ZSCA 4Z03A 3FY3A 1O8EA 2INUA 2O1DA 2UVEA 2NT9A 4W8QA 4C2LA 1DBGA 1O8LA 4AVZA 3WWGA 2O0WA 3LMWA 4XNFA 2PYGA 2NT6A 1OGMX 3VMVA 1H80A 4W8RA 4OZYA 2VJIA 4XLHA 4OJ6A 4YZAA 5C1CA 2X3HA 2QY1A 1IDJA 1QCXA 1CZFA 4I84A 2NTBA 2QXZA 2QX3A 3JURA 3GRHA 4W8SA 1PLUA 5C1EA 4XKWA 4YZ0A 4OJ5A 4NK8A 1O8GA 1OFLA 4XONA 1BN8A 1IA5A 3GQAA 1HG8A 1OOCA 1PE9A 1OGOX 4Z06A 4OJPA 4XLFA 1AIRA 1O8IA 4XN3A 4XLEA 4XN0A 2VJJA 2NZMA 4XOTA 1O8FA 1RU4A 2ODLA 1PXZA 3EQOA 1EE6A 1IB4A 4XLAA 3ZPPA 2X6YA 2VBEA
chains in the Genus database with same CATH superfamily
4XR6A 2VBMA 3KRGA 3BH6B 1IDKA 1GQ8A 1JRGA 2VFPA 2XT2A 3VSUA 3SUCA 1K5CA 1KTWA 1TYWA 4W8TA 4XM3A 2QYUA 1WMRA 3B90A 2NTQA 4MR0A 1QRCA 1TYUA 4YDTA 3SZEA 1QJVA 3VSVA 4NK6A 1NHCA 4XKVA 1QQ1A 2F3LA 4HWVA 1X0CA 3PSZA 1QA2A 1O8KA 1KQ5A 1O8HA 3BH7B 3GQ9A 4URRA 1RWRA 1O8MA 4XL9A 4OZZA 1O8JA 4U49A 2O6WA 5JLVC 4YZQA 2O0VA 2IOUG 4YELA 3ML3A 3VMWA 3TH0A 2X6WA 2BM7A 2G0YA 2X6XA 2XTWA 3B4NA 4OPWA 4XOPA 1KCDA 2NTPA 2PYHA 2VFOA 1QRBA 1RMGA 1TYXA 3GQ8A 3GQ7A 2J8KA 1VBLA 1JTAA 2PECA 3B8YA 2Z8GA 3UW0A 1EA0A 2NSTA 1BHEA 2J8IA 2INVA 4Z05A 2YUHA 2O17A 2EWEA 3PETA 1OFEA 2VFMA 4PMHA 4YEJA 1O88A 2XTXA 3P4GA 4OJLA 3LJYA 4YZXA 2VFNA 1OFMA 2IQ7A 2BSPA 2UVFA 4JRAC 5AMVA 3RIQA 2X85A 3NB2A 3EQNA 4MXNA 4XLAA 2NSPA 2VBKA 4XLCA 4U4BA 4EW9A 1DBOA 4OJOA 4YFOA 1XG2A 1KCCA 3VSTA 2XC1A 1O8DA 1HF2A 4XORA 1LLZA 4XMYA 2W7ZA 4XQFA 1WXRA 3SY2A 3T9GA 2O04A 3ZSCA 4Z03A 3FY3A 1O8EA 2INUA 2O1DA 2UVEA 2NT9A 4W8QA 4C2LA 2BM6A 1DBGA 5DNSA 1O8LA 4AVZA 3WWGA 2O0WA 3LMWA 3AK5A 4XNFA 1TYVA 2NT6A 1OGMX 2B0RA 2PYGA 1TSPA 3VMVA 5JMCB 1H80A 3PSSA 3N90A 4OZYA 2VJIA 4W8RA 3LYCA 4OJ6A 4XLHA 1QA1A 1K4ZA 4V02C 2BM5A 4YZAA 4YCQA 5C1CA 2X3HA 2QY1A 1IDJA 1LM1A 1K8FA 1QCXA 1CZFA 1LLWA 2NTBA 3H09A 2QXZA 4I84A 2XT4A 2QX3A 3JX8A 3JURA 3GRHA 3N6ZA 3SQVA 4W8SA 4YEIA 1PLUA 5C1EA 4XKWA 4YC5A 4YZ0A 4OJ5A 3DU1X 1DABA 4NK8A 1O8GA 1OFLA 4XONA 2VFQA 1BN8A 1OFDA 1IA5A 3GQAA 2XTYA 1HG8A 1OOCA 1CLWA 1PE9A 1OGOX 2V5IA 1EZGA 3NAWA 4KH3A 4Z06A 1QA3A 2QZAA 4OJPA 4XLFA 1AIRA 1O8IA 4XN3A 4XLEA 4XN0A 2VJJA 3SYJA 2NZMA 4XOTA 1O8FA 2BM4A 1RU4A 2ODLA 1L1IA 1PXZA 3EQOA 1EE6A 4OM9A 1IB4A 2BX6A 3ZPPA 2X6YA 2VBEA
chains in the Genus database with same CATH topology
4XR6A 2VBMA 3KRGA 1IDKA 1GQ8A 1JRGA 3VSUA 3SUCA 1K5CA 1KTWA 4W8TA 4XM3A 1WMRA 3B90A 2NTQA 4MR0A 3VSVA 1QJVA 1NHCA 4NK6A 4XKVA 4HWVA 1X0CA 1O8KA 1O8HA 3GQ9A 4URRA 4XL9A 1RWRA 1O8MA 4OZZA 1O8JA 4U49A 4YZQA 2O0VA 4YELA 3VMWA 2X6WA 4XOPA 2X6XA 3B4NA 1KCDA 2NTPA 2PYHA 3GQ8A 1RMGA 3GQ7A 2PECA 1VBLA 1JTAA 3B8YA 2Z8GA 3UW0A 2NSTA 1BHEA 2INVA 4Z05A 2O17A 2EWEA 4PMHA 4YEJA 1O88A 4OJLA 4YZXA 1OFMA 2BSPA 2IQ7A 2UVFA 5AMVA 2X85A 3EQNA 4MXNA 2NSPA 2VBKA 4XLCA 4U4BA 4EW9A 1DBOA 4OJOA 1XG2A 1KCCA 3VSTA 1O8DA 4XORA 4XMYA 4XQFA 3T9GA 2O04A 3ZSCA 4Z03A 3FY3A 1O8EA 2INUA 2O1DA 2UVEA 2NT9A 4W8QA 4C2LA 1DBGA 1O8LA 4AVZA 3WWGA 2O0WA 3LMWA 4XNFA 2PYGA 2NT6A 1OGMX 3VMVA 1H80A 4W8RA 4OZYA 2VJIA 4XLHA 4OJ6A 4YZAA 5C1CA 2X3HA 2QY1A 1IDJA 1QCXA 1CZFA 4I84A 2NTBA 2QXZA 2QX3A 3JURA 3GRHA 4W8SA 1PLUA 5C1EA 4XKWA 4YZ0A 4OJ5A 4NK8A 1O8GA 1OFLA 4XONA 1BN8A 1IA5A 3GQAA 1HG8A 1OOCA 1PE9A 1OGOX 4Z06A 4OJPA 4XLFA 1AIRA 1O8IA 4XN3A 4XLEA 4XN0A 2VJJA 2NZMA 4XOTA 1O8FA 1RU4A 2ODLA 1PXZA 3EQOA 1EE6A 1IB4A 4XLAA 3ZPPA 2X6YA 2VBEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XR6 A;  2VBM A;  3KRG A;  1IDK A;  1GQ8 A;  1JRG A;  3VSU A;  3SUC A;  1K5C A;  1KTW A;  4W8T A;  4XM3 A;  1WMR A;  3B90 A;  2NTQ A;  4MR0 A;  3VSV A;  1QJV A;  1NHC A;  4NK6 A;  4XKV A;  4HWV A;  1X0C A;  1O8K A;  1O8H A;  3GQ9 A;  4URR A;  4XL9 A;  1RWR A;  1O8M A;  4OZZ A;  1O8J A;  4U49 A;  4YZQ A;  2O0V A;  4YEL A;  3VMW A;  2X6W A;  4XOP A;  2X6X A;  3B4N A;  1KCD A;  2NTP A;  2PYH A;  3GQ8 A;  1RMG A;  3GQ7 A;  2PEC A;  1VBL A;  1JTA A;  3B8Y A;  2Z8G A;  3UW0 A;  2NST A;  1BHE A;  2INV A;  4Z05 A;  2O17 A;  2EWE A;  4PMH A;  4YEJ A;  1O88 A;  4OJL A;  4YZX A;  1OFM A;  2BSP A;  2IQ7 A;  2UVF A;  5AMV A;  2X85 A;  3EQN A;  4MXN A;  2NSP A;  2VBK A;  4XLC A;  4U4B A;  4EW9 A;  1DBO A;  4OJO A;  1XG2 A;  1KCC A;  3VST A;  1O8D A;  4XOR A;  4XMY A;  4XQF A;  3T9G A;  2O04 A;  3ZSC A;  4Z03 A;  3FY3 A;  1O8E A;  2INU A;  2O1D A;  2UVE A;  2NT9 A;  4W8Q A;  4C2L A;  1DBG A;  1O8L A;  4AVZ A;  3WWG A;  2O0W A;  3LMW A;  4XNF A;  2PYG A;  2NT6 A;  1OGM X;  3VMV A;  1H80 A;  4W8R A;  4OZY A;  2VJI A;  4XLH A;  4OJ6 A;  4YZA A;  5C1C A;  2X3H A;  2QY1 A;  1IDJ A;  1QCX A;  1CZF A;  4I84 A;  2NTB A;  2QXZ A;  2QX3 A;  3JUR A;  3GRH A;  4W8S A;  1PLU A;  5C1E A;  4XKW A;  4YZ0 A;  4OJ5 A;  4NK8 A;  1O8G A;  1OFL A;  4XON A;  1BN8 A;  1IA5 A;  3GQA A;  1HG8 A;  1OOC A;  1PE9 A;  1OGO X;  4Z06 A;  4OJP A;  4XLF A;  1AIR A;  1O8I A;  4XN3 A;  4XLE A;  4XN0 A;  2VJJ A;  2NZM A;  4XOT A;  1O8F A;  1RU4 A;  2ODL A;  1PXZ A;  3EQO A;  1EE6 A;  1IB4 A;  4XLA A;  3ZPP A;  2X6Y A;  2VBE A; 
#chains in the Genus database with same CATH topology
 4XR6 A;  2VBM A;  3KRG A;  3BH6 B;  1IDK A;  1GQ8 A;  1JRG A;  2VFP A;  2XT2 A;  3VSU A;  3SUC A;  1K5C A;  1KTW A;  1TYW A;  4W8T A;  4XM3 A;  2QYU A;  1WMR A;  3B90 A;  2NTQ A;  4MR0 A;  1QRC A;  1TYU A;  4YDT A;  3SZE A;  1QJV A;  3VSV A;  4NK6 A;  1NHC A;  4XKV A;  1QQ1 A;  2F3L A;  4HWV A;  1X0C A;  3PSZ A;  1QA2 A;  1O8K A;  1KQ5 A;  1O8H A;  3BH7 B;  3GQ9 A;  4URR A;  1RWR A;  1O8M A;  4XL9 A;  4OZZ A;  1O8J A;  4U49 A;  2O6W A;  5JLV C;  4YZQ A;  2O0V A;  2IOU G;  4YEL A;  3ML3 A;  3VMW A;  3TH0 A;  2X6W A;  2BM7 A;  2G0Y A;  2X6X A;  2XTW A;  3B4N A;  4OPW A;  4XOP A;  1KCD A;  2NTP A;  2PYH A;  2VFO A;  1QRB A;  1RMG A;  1TYX A;  3GQ8 A;  3GQ7 A;  2J8K A;  1VBL A;  1JTA A;  2PEC A;  3B8Y A;  2Z8G A;  3UW0 A;  1EA0 A;  2NST A;  1BHE A;  2J8I A;  2INV A;  4Z05 A;  2YUH A;  2O17 A;  2EWE A;  3PET A;  1OFE A;  2VFM A;  4PMH A;  4YEJ A;  1O88 A;  2XTX A;  3P4G A;  4OJL A;  3LJY A;  4YZX A;  2VFN A;  1OFM A;  2IQ7 A;  2BSP A;  2UVF A;  4JRA C;  5AMV A;  3RIQ A;  2X85 A;  3NB2 A;  3EQN A;  4MXN A;  4XLA A;  2NSP A;  2VBK A;  4XLC A;  4U4B A;  4EW9 A;  1DBO A;  4OJO A;  4YFO A;  1XG2 A;  1KCC A;  3VST A;  2XC1 A;  1O8D A;  1HF2 A;  4XOR A;  1LLZ A;  4XMY A;  2W7Z A;  4XQF A;  1WXR A;  3SY2 A;  3T9G A;  2O04 A;  3ZSC A;  4Z03 A;  3FY3 A;  1O8E A;  2INU A;  2O1D A;  2UVE A;  2NT9 A;  4W8Q A;  4C2L A;  2BM6 A;  1DBG A;  5DNS A;  1O8L A;  4AVZ A;  3WWG A;  2O0W A;  3LMW A;  3AK5 A;  4XNF A;  1TYV A;  2NT6 A;  1OGM X;  2B0R A;  2PYG A;  1TSP A;  3VMV A;  5JMC B;  1H80 A;  3PSS A;  3N90 A;  4OZY A;  2VJI A;  4W8R A;  3LYC A;  4OJ6 A;  4XLH A;  1QA1 A;  1K4Z A;  4V02 C;  2BM5 A;  4YZA A;  4YCQ A;  5C1C A;  2X3H A;  2QY1 A;  1IDJ A;  1LM1 A;  1K8F A;  1QCX A;  1CZF A;  1LLW A;  2NTB A;  3H09 A;  2QXZ A;  4I84 A;  2XT4 A;  2QX3 A;  3JX8 A;  3JUR A;  3GRH A;  3N6Z A;  3SQV A;  4W8S A;  4YEI A;  1PLU A;  5C1E A;  4XKW A;  4YC5 A;  4YZ0 A;  4OJ5 A;  3DU1 X;  1DAB A;  4NK8 A;  1O8G A;  1OFL A;  4XON A;  2VFQ A;  1BN8 A;  1OFD A;  1IA5 A;  3GQA A;  2XTY A;  1HG8 A;  1OOC A;  1CLW A;  1PE9 A;  1OGO X;  2V5I A;  1EZG A;  3NAW A;  4KH3 A;  4Z06 A;  1QA3 A;  2QZA A;  4OJP A;  4XLF A;  1AIR A;  1O8I A;  4XN3 A;  4XLE A;  4XN0 A;  2VJJ A;  3SYJ A;  2NZM A;  4XOT A;  1O8F A;  2BM4 A;  1RU4 A;  2ODL A;  1L1I A;  1PXZ A;  3EQO A;  1EE6 A;  4OM9 A;  1IB4 A;  2BX6 A;  3ZPP A;  2X6Y A;  2VBE A; 
#chains in the Genus database with same CATH homology
 4XR6 A;  2VBM A;  3KRG A;  1IDK A;  1GQ8 A;  1JRG A;  3VSU A;  3SUC A;  1K5C A;  1KTW A;  4W8T A;  4XM3 A;  1WMR A;  3B90 A;  2NTQ A;  4MR0 A;  3VSV A;  1QJV A;  1NHC A;  4NK6 A;  4XKV A;  4HWV A;  1X0C A;  1O8K A;  1O8H A;  3GQ9 A;  4URR A;  4XL9 A;  1RWR A;  1O8M A;  4OZZ A;  1O8J A;  4U49 A;  4YZQ A;  2O0V A;  4YEL A;  3VMW A;  2X6W A;  4XOP A;  2X6X A;  3B4N A;  1KCD A;  2NTP A;  2PYH A;  3GQ8 A;  1RMG A;  3GQ7 A;  2PEC A;  1VBL A;  1JTA A;  3B8Y A;  2Z8G A;  3UW0 A;  2NST A;  1BHE A;  2INV A;  4Z05 A;  2O17 A;  2EWE A;  4PMH A;  4YEJ A;  1O88 A;  4OJL A;  4YZX A;  1OFM A;  2BSP A;  2IQ7 A;  2UVF A;  5AMV A;  2X85 A;  3EQN A;  4MXN A;  2NSP A;  2VBK A;  4XLC A;  4U4B A;  4EW9 A;  1DBO A;  4OJO A;  1XG2 A;  1KCC A;  3VST A;  1O8D A;  4XOR A;  4XMY A;  4XQF A;  3T9G A;  2O04 A;  3ZSC A;  4Z03 A;  3FY3 A;  1O8E A;  2INU A;  2O1D A;  2UVE A;  2NT9 A;  4W8Q A;  4C2L A;  1DBG A;  1O8L A;  4AVZ A;  3WWG A;  2O0W A;  3LMW A;  4XNF A;  2PYG A;  2NT6 A;  1OGM X;  3VMV A;  1H80 A;  4W8R A;  4OZY A;  2VJI A;  4XLH A;  4OJ6 A;  4YZA A;  5C1C A;  2X3H A;  2QY1 A;  1IDJ A;  1QCX A;  1CZF A;  4I84 A;  2NTB A;  2QXZ A;  2QX3 A;  3JUR A;  3GRH A;  4W8S A;  1PLU A;  5C1E A;  4XKW A;  4YZ0 A;  4OJ5 A;  4NK8 A;  1O8G A;  1OFL A;  4XON A;  1BN8 A;  1IA5 A;  3GQA A;  1HG8 A;  1OOC A;  1PE9 A;  1OGO X;  4Z06 A;  4OJP A;  4XLF A;  1AIR A;  1O8I A;  4XN3 A;  4XLE A;  4XN0 A;  2VJJ A;  2NZM A;  4XOT A;  1O8F A;  1RU4 A;  2ODL A;  1PXZ A;  3EQO A;  1EE6 A;  1IB4 A;  4XLA A;  3ZPP A;  2X6Y A;  2VBE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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