1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PROTEIN (PECTATE LYASE)
publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
molecule tags Lyase
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
1OFLA 4YZQA 4XL9A 2INUA 4W8SA 4XN0A 4OJOA 3VMVA 2NZMA 3UW0A 1DBOA 2NT6A 2X6YA 1QCXA 4YZXA 1IB4A 4XORA 3GRHA 1VBLA 4YZAA 4XMYA 4U49A 2VBEA 1OGMX 3GQ9A 3VSVA 2UVEA 1K5CA 1XG2A 1IDJA 4OJ6A 4XN3A 4W8QA 4OZYA 5AMVA 2X85A 3FY3A 2NTQA 4URRA 3B4NA 4U4BA 2VJJA 4XM3A 3ZSCA 5C1CA 4W8RA 2O0VA 4W8TA 2QX3A 1X0CA 3B8YA 1O8MA 3GQAA 4HWVA 1NHCA 1O8DA 4NK8A 1OFMA 4XLEA 1KCCA 1PE9A 1BHEA 4YEJA 3GQ8A 4XKVA 4MXNA 2VJIA 2Z8GA 2O17A 4XNFA 4YELA 2NSPA 4OJPA 1RMGA 1H80A 4C2LA 3KRGA 4MR0A 4XLFA 1O8FA 2ODLA 1IDKA 4XLAA 1IA5A 2PYHA 4Z03A 1HG8A 1CZFA 2UVFA 1BN8A 3JURA 4YZ0A 2IQ7A 4XOTA 2INVA 2O1DA 1OOCA 2VBKA 2EWEA 1JTAA 2QXZA 2X3HA 2PYGA 4NK6A 1PXZA 3EQOA 4XQFA 1AIRA 1PLUA 3VSTA 3VSUA 4Z05A 3WWGA 4XLCA 3GQ7A 5C1EA 3EQNA 1RU4A 2VBMA 1O8GA 3ZPPA 1GQ8A 2NTBA 1KCDA 1O8KA 4XKWA 3VMWA 1KTWA 4XONA 2QY1A 2NSTA 1RWRA 1O8HA 2O0WA 3B90A 1WMRA 4OZZA 2O04A 2NTPA 1OGOX 4OJLA 3T9GA 2BSPA 4Z06A 4OJ5A 1O8IA 1DBGA 4PMHA 4XLHA 1JRGA 2PECA 1O8LA 4XR6A 2NT9A 2X6WA 4I84A 1EE6A 4AVZA 1O8EA 1O88A 3LMWA 3SUCA 2X6XA 4XOPA 1O8JA 1QJVA 4EW9A
chains in the Genus database with same CATH superfamily
1OFLA 3RIQA 1CLWA 2V5IA 2XT4A 2QZAA 4V02C 4YZQA 4XL9A 2INUA 4W8SA 4XN0A 4OJOA 3VMVA 1KQ5A 2B0RA 3PETA 2NZMA 3UW0A 1DBOA 2NT6A 2X6YA 1QCXA 1QRCA 4YZXA 1IB4A 4XORA 4YFOA 3GRHA 3SY2A 1VBLA 4YZAA 4XMYA 2G0YA 4U49A 3BH7B 2VBEA 1OGMX 3GQ9A 3VSVA 2BM7A 2UVEA 1K5CA 1XG2A 2XT2A 1IDJA 3DU1X 5JMCB 4OJ6A 4XN3A 4W8QA 4KH3A 5JLVC 4OZYA 5AMVA 2XTWA 1TYVA 2X85A 3FY3A 1LM1A 2NTQA 4URRA 3B4NA 4U4BA 2VJJA 4XM3A 3ZSCA 5C1CA 4W8RA 1QA1A 2O0VA 4W8TA 2QX3A 1X0CA 3SYJA 3B8YA 3N6ZA 1O8MA 3GQAA 4HWVA 3TH0A 1NHCA 3JX8A 1O8DA 2J8IA 4NK8A 1QA2A 2J8KA 1OFMA 1QQ1A 2XC1A 1PE9A 1BHEA 4XLEA 1KCCA 4YEJA 3GQ8A 4XKVA 4MXNA 2VJIA 2Z8GA 2O17A 4XNFA 4YC5A 4YELA 2IOUG 2NSPA 4OJPA 3N90A 1RMGA 3BH6B 3ML3A 1H80A 1TYXA 3LYCA 3PSSA 1TSPA 4C2LA 2O6WA 3KRGA 5DNSA 4MR0A 4XLFA 1O8FA 1HF2A 2BM4A 3NB2A 2ODLA 1IDKA 4XLAA 1IA5A 2PYHA 4Z03A 1HG8A 2VFMA 1EA0A 1CZFA 2UVFA 1BN8A 3JURA 4YZ0A 1LLWA 1LLZA 2VFQA 2IQ7A 2XTXA 4XOTA 3SQVA 1EZGA 2INVA 2O1DA 1OOCA 2VBKA 2EWEA 1JTAA 2QXZA 2X3HA 2PYGA 3H09A 4NK6A 1K8FA 4OM9A 1PXZA 3SZEA 3EQOA 2VFNA 2W7ZA 4XQFA 2BM6A 1K4ZA 2VFOA 1AIRA 1PLUA 3VSTA 3VSUA 2YUHA 4Z05A 3WWGA 1TYWA 2QYUA 4XLCA 3GQ7A 5C1EA 3EQNA 1RU4A 2VBMA 1O8GA 3NAWA 1GQ8A 2NTBA 2BX6A 3ZPPA 1KCDA 3AK5A 1O8KA 4XKWA 3PSZA 3VMWA 1WXRA 1KTWA 4XONA 2NSTA 1RWRA 1O8HA 2QY1A 2O0WA 3B90A 1OFDA 1WMRA 4OZZA 2O04A 2NTPA 1OGOX 4OJLA 2F3LA 3T9GA 3LJYA 2BSPA 4Z06A 4JRAC 4OJ5A 1O8IA 4YCQA 4OPWA 1DBGA 4YEIA 4PMHA 4XLHA 1OFEA 4YDTA 1JRGA 2PECA 1O8LA 4XR6A 1L1IA 3P4GA 2BM5A 1TYUA 2NT9A 2X6WA 4I84A 1DABA 1QA3A 2VFPA 2XTYA 1QRBA 1EE6A 4AVZA 1O8EA 1O88A 3LMWA 3SUCA 2X6XA 4XOPA 1O8JA 1QJVA 4EW9A
chains in the Genus database with same CATH topology
1OFLA 4YZQA 4XL9A 2INUA 4W8SA 4XN0A 4OJOA 3VMVA 2NZMA 3UW0A 1DBOA 2NT6A 2X6YA 1QCXA 4YZXA 1IB4A 4XORA 3GRHA 1VBLA 4YZAA 4XMYA 4U49A 2VBEA 1OGMX 3GQ9A 3VSVA 2UVEA 1K5CA 1XG2A 1IDJA 4OJ6A 4XN3A 4W8QA 4OZYA 5AMVA 2X85A 3FY3A 2NTQA 4URRA 3B4NA 4U4BA 2VJJA 4XM3A 3ZSCA 5C1CA 4W8RA 2O0VA 4W8TA 2QX3A 1X0CA 3B8YA 1O8MA 3GQAA 4HWVA 1NHCA 1O8DA 4NK8A 1OFMA 4XLEA 1KCCA 1PE9A 1BHEA 4YEJA 3GQ8A 4XKVA 4MXNA 2VJIA 2Z8GA 2O17A 4XNFA 4YELA 2NSPA 4OJPA 1RMGA 1H80A 4C2LA 3KRGA 4MR0A 4XLFA 1O8FA 2ODLA 1IDKA 4XLAA 1IA5A 2PYHA 4Z03A 1HG8A 1CZFA 2UVFA 1BN8A 3JURA 4YZ0A 2IQ7A 4XOTA 2INVA 2O1DA 1OOCA 2VBKA 2EWEA 1JTAA 2QXZA 2X3HA 2PYGA 4NK6A 1PXZA 3EQOA 4XQFA 1AIRA 1PLUA 3VSTA 3VSUA 4Z05A 3WWGA 4XLCA 3GQ7A 5C1EA 3EQNA 1RU4A 2VBMA 1O8GA 3ZPPA 1GQ8A 2NTBA 1KCDA 1O8KA 4XKWA 3VMWA 1KTWA 4XONA 2QY1A 2NSTA 1RWRA 1O8HA 2O0WA 3B90A 1WMRA 4OZZA 2O04A 2NTPA 1OGOX 4OJLA 3T9GA 2BSPA 4Z06A 4OJ5A 1O8IA 1DBGA 4PMHA 4XLHA 1JRGA 2PECA 1O8LA 4XR6A 2NT9A 2X6WA 4I84A 1EE6A 4AVZA 1O8EA 1O88A 3LMWA 3SUCA 2X6XA 4XOPA 1O8JA 1QJVA 4EW9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OFL A;  4YZQ A;  4XL9 A;  2INU A;  4W8S A;  4XN0 A;  4OJO A;  3VMV A;  2NZM A;  3UW0 A;  1DBO A;  2NT6 A;  2X6Y A;  1QCX A;  4YZX A;  1IB4 A;  4XOR A;  3GRH A;  1VBL A;  4YZA A;  4XMY A;  4U49 A;  2VBE A;  1OGM X;  3GQ9 A;  3VSV A;  2UVE A;  1K5C A;  1XG2 A;  1IDJ A;  4OJ6 A;  4XN3 A;  4W8Q A;  4OZY A;  5AMV A;  2X85 A;  3FY3 A;  2NTQ A;  4URR A;  3B4N A;  4U4B A;  2VJJ A;  4XM3 A;  3ZSC A;  5C1C A;  4W8R A;  2O0V A;  4W8T A;  2QX3 A;  1X0C A;  3B8Y A;  1O8M A;  3GQA A;  4HWV A;  1NHC A;  1O8D A;  4NK8 A;  1OFM A;  4XLE A;  1KCC A;  1PE9 A;  1BHE A;  4YEJ A;  3GQ8 A;  4XKV A;  4MXN A;  2VJI A;  2Z8G A;  2O17 A;  4XNF A;  4YEL A;  2NSP A;  4OJP A;  1RMG A;  1H80 A;  4C2L A;  3KRG A;  4MR0 A;  4XLF A;  1O8F A;  2ODL A;  1IDK A;  4XLA A;  1IA5 A;  2PYH A;  4Z03 A;  1HG8 A;  1CZF A;  2UVF A;  1BN8 A;  3JUR A;  4YZ0 A;  2IQ7 A;  4XOT A;  2INV A;  2O1D A;  1OOC A;  2VBK A;  2EWE A;  1JTA A;  2QXZ A;  2X3H A;  2PYG A;  4NK6 A;  1PXZ A;  3EQO A;  4XQF A;  1AIR A;  1PLU A;  3VST A;  3VSU A;  4Z05 A;  3WWG A;  4XLC A;  3GQ7 A;  5C1E A;  3EQN A;  1RU4 A;  2VBM A;  1O8G A;  3ZPP A;  1GQ8 A;  2NTB A;  1KCD A;  1O8K A;  4XKW A;  3VMW A;  1KTW A;  4XON A;  2QY1 A;  2NST A;  1RWR A;  1O8H A;  2O0W A;  3B90 A;  1WMR A;  4OZZ A;  2O04 A;  2NTP A;  1OGO X;  4OJL A;  3T9G A;  2BSP A;  4Z06 A;  4OJ5 A;  1O8I A;  1DBG A;  4PMH A;  4XLH A;  1JRG A;  2PEC A;  1O8L A;  4XR6 A;  2NT9 A;  2X6W A;  4I84 A;  1EE6 A;  4AVZ A;  1O8E A;  1O88 A;  3LMW A;  3SUC A;  2X6X A;  4XOP A;  1O8J A;  1QJV A;  4EW9 A; 
#chains in the Genus database with same CATH topology
 1OFL A;  3RIQ A;  1CLW A;  2V5I A;  2XT4 A;  2QZA A;  4V02 C;  4YZQ A;  4XL9 A;  2INU A;  4W8S A;  4XN0 A;  4OJO A;  3VMV A;  1KQ5 A;  2B0R A;  3PET A;  2NZM A;  3UW0 A;  1DBO A;  2NT6 A;  2X6Y A;  1QCX A;  1QRC A;  4YZX A;  1IB4 A;  4XOR A;  4YFO A;  3GRH A;  3SY2 A;  1VBL A;  4YZA A;  4XMY A;  2G0Y A;  4U49 A;  3BH7 B;  2VBE A;  1OGM X;  3GQ9 A;  3VSV A;  2BM7 A;  2UVE A;  1K5C A;  1XG2 A;  2XT2 A;  1IDJ A;  3DU1 X;  5JMC B;  4OJ6 A;  4XN3 A;  4W8Q A;  4KH3 A;  5JLV C;  4OZY A;  5AMV A;  2XTW A;  1TYV A;  2X85 A;  3FY3 A;  1LM1 A;  2NTQ A;  4URR A;  3B4N A;  4U4B A;  2VJJ A;  4XM3 A;  3ZSC A;  5C1C A;  4W8R A;  1QA1 A;  2O0V A;  4W8T A;  2QX3 A;  1X0C A;  3SYJ A;  3B8Y A;  3N6Z A;  1O8M A;  3GQA A;  4HWV A;  3TH0 A;  1NHC A;  3JX8 A;  1O8D A;  2J8I A;  4NK8 A;  1QA2 A;  2J8K A;  1OFM A;  1QQ1 A;  2XC1 A;  1PE9 A;  1BHE A;  4XLE A;  1KCC A;  4YEJ A;  3GQ8 A;  4XKV A;  4MXN A;  2VJI A;  2Z8G A;  2O17 A;  4XNF A;  4YC5 A;  4YEL A;  2IOU G;  2NSP A;  4OJP A;  3N90 A;  1RMG A;  3BH6 B;  3ML3 A;  1H80 A;  1TYX A;  3LYC A;  3PSS A;  1TSP A;  4C2L A;  2O6W A;  3KRG A;  5DNS A;  4MR0 A;  4XLF A;  1O8F A;  1HF2 A;  2BM4 A;  3NB2 A;  2ODL A;  1IDK A;  4XLA A;  1IA5 A;  2PYH A;  4Z03 A;  1HG8 A;  2VFM A;  1EA0 A;  1CZF A;  2UVF A;  1BN8 A;  3JUR A;  4YZ0 A;  1LLW A;  1LLZ A;  2VFQ A;  2IQ7 A;  2XTX A;  4XOT A;  3SQV A;  1EZG A;  2INV A;  2O1D A;  1OOC A;  2VBK A;  2EWE A;  1JTA A;  2QXZ A;  2X3H A;  2PYG A;  3H09 A;  4NK6 A;  1K8F A;  4OM9 A;  1PXZ A;  3SZE A;  3EQO A;  2VFN A;  2W7Z A;  4XQF A;  2BM6 A;  1K4Z A;  2VFO A;  1AIR A;  1PLU A;  3VST A;  3VSU A;  2YUH A;  4Z05 A;  3WWG A;  1TYW A;  2QYU A;  4XLC A;  3GQ7 A;  5C1E A;  3EQN A;  1RU4 A;  2VBM A;  1O8G A;  3NAW A;  1GQ8 A;  2NTB A;  2BX6 A;  3ZPP A;  1KCD A;  3AK5 A;  1O8K A;  4XKW A;  3PSZ A;  3VMW A;  1WXR A;  1KTW A;  4XON A;  2NST A;  1RWR A;  1O8H A;  2QY1 A;  2O0W A;  3B90 A;  1OFD A;  1WMR A;  4OZZ A;  2O04 A;  2NTP A;  1OGO X;  4OJL A;  2F3L A;  3T9G A;  3LJY A;  2BSP A;  4Z06 A;  4JRA C;  4OJ5 A;  1O8I A;  4YCQ A;  4OPW A;  1DBG A;  4YEI A;  4PMH A;  4XLH A;  1OFE A;  4YDT A;  1JRG A;  2PEC A;  1O8L A;  4XR6 A;  1L1I A;  3P4G A;  2BM5 A;  1TYU A;  2NT9 A;  2X6W A;  4I84 A;  1DAB A;  1QA3 A;  2VFP A;  2XTY A;  1QRB A;  1EE6 A;  4AVZ A;  1O8E A;  1O88 A;  3LMW A;  3SUC A;  2X6X A;  4XOP A;  1O8J A;  1QJV A;  4EW9 A; 
#chains in the Genus database with same CATH homology
 1OFL A;  4YZQ A;  4XL9 A;  2INU A;  4W8S A;  4XN0 A;  4OJO A;  3VMV A;  2NZM A;  3UW0 A;  1DBO A;  2NT6 A;  2X6Y A;  1QCX A;  4YZX A;  1IB4 A;  4XOR A;  3GRH A;  1VBL A;  4YZA A;  4XMY A;  4U49 A;  2VBE A;  1OGM X;  3GQ9 A;  3VSV A;  2UVE A;  1K5C A;  1XG2 A;  1IDJ A;  4OJ6 A;  4XN3 A;  4W8Q A;  4OZY A;  5AMV A;  2X85 A;  3FY3 A;  2NTQ A;  4URR A;  3B4N A;  4U4B A;  2VJJ A;  4XM3 A;  3ZSC A;  5C1C A;  4W8R A;  2O0V A;  4W8T A;  2QX3 A;  1X0C A;  3B8Y A;  1O8M A;  3GQA A;  4HWV A;  1NHC A;  1O8D A;  4NK8 A;  1OFM A;  4XLE A;  1KCC A;  1PE9 A;  1BHE A;  4YEJ A;  3GQ8 A;  4XKV A;  4MXN A;  2VJI A;  2Z8G A;  2O17 A;  4XNF A;  4YEL A;  2NSP A;  4OJP A;  1RMG A;  1H80 A;  4C2L A;  3KRG A;  4MR0 A;  4XLF A;  1O8F A;  2ODL A;  1IDK A;  4XLA A;  1IA5 A;  2PYH A;  4Z03 A;  1HG8 A;  1CZF A;  2UVF A;  1BN8 A;  3JUR A;  4YZ0 A;  2IQ7 A;  4XOT A;  2INV A;  2O1D A;  1OOC A;  2VBK A;  2EWE A;  1JTA A;  2QXZ A;  2X3H A;  2PYG A;  4NK6 A;  1PXZ A;  3EQO A;  4XQF A;  1AIR A;  1PLU A;  3VST A;  3VSU A;  4Z05 A;  3WWG A;  4XLC A;  3GQ7 A;  5C1E A;  3EQN A;  1RU4 A;  2VBM A;  1O8G A;  3ZPP A;  1GQ8 A;  2NTB A;  1KCD A;  1O8K A;  4XKW A;  3VMW A;  1KTW A;  4XON A;  2QY1 A;  2NST A;  1RWR A;  1O8H A;  2O0W A;  3B90 A;  1WMR A;  4OZZ A;  2O04 A;  2NTP A;  1OGO X;  4OJL A;  3T9G A;  2BSP A;  4Z06 A;  4OJ5 A;  1O8I A;  1DBG A;  4PMH A;  4XLH A;  1JRG A;  2PEC A;  1O8L A;  4XR6 A;  2NT9 A;  2X6W A;  4I84 A;  1EE6 A;  4AVZ A;  1O8E A;  1O88 A;  3LMW A;  3SUC A;  2X6X A;  4XOP A;  1O8J A;  1QJV A;  4EW9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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