1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PROTEIN (PECTATE LYASE)
publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
1IB4A 4XONA 2NSPA 4XQFA 1BHEA 1PLUA 4OJ6A 3VSTA 2NSTA 4W8RA 3GQ9A 1O8MA 1K5CA 1WMRA 4U4BA 4AVZA 3GQ7A 2VJJA 1IA5A 1OFMA 2UVFA 1HG8A 4YZXA 1KCCA 4XMYA 1QJVA 4OZYA 4XLHA 2INUA 3GQAA 4YZQA 2VBKA 2X6XA 1KTWA 4OJLA 4XLAA 4Z03A 5C1CA 3WWGA 2VBEA 3VMWA 1O8GA 3VMVA 2O17A 4XKWA 1PE9A 3ZSCA 1O8IA 4OZZA 1OGMX 1PXZA 4XKVA 3UW0A 3VSUA 1O8KA 2O1DA 2QX3A 3B90A 2NTPA 1GQ8A 1XG2A 4W8QA 3ZPPA 2NT6A 3SUCA 2NZMA 3VSVA 4W8SA 2NT9A 1RWRA 4U49A 4XLEA 4YELA 5AMVA 4W8TA 2ODLA 3JURA 2Z8GA 2O04A 4C2LA 1BN8A 1IDKA 2X6YA 1KCDA 4XL9A 2VJIA 4EW9A 1OGOX 4XN3A 2QY1A 4URRA 2INVA 1NHCA 2X6WA 1JTAA 1QCXA 4XLFA 4YZ0A 1O8JA 1CZFA 4XR6A 2QXZA 1VBLA 2O0VA 2NTBA 4OJ5A 3EQNA 4XORA 1OOCA 3EQOA 3KRGA 5C1EA 4MR0A 4PMHA 1EE6A 3GQ8A 2PECA 2X85A 2PYHA 4MXNA 2UVEA 1JRGA 3LMWA 4NK8A 2IQ7A 4Z05A 2NTQA 1RU4A 1O88A 3B8YA 1O8EA 1X0CA 4XM3A 1H80A 1OFLA 2BSPA 4NK6A 4Z06A 1O8LA 1RMGA 3T9GA 2O0WA 2VBMA 2EWEA 4XN0A 1AIRA 1IDJA 3B4NA 3FY3A 3GRHA 2X3HA 1O8DA 1DBOA 4OJOA 4YEJA 4XOTA 4HWVA 4OJPA 2PYGA 4I84A 1DBGA 1O8FA 4XLCA 4XOPA 4XNFA 4YZAA 1O8HA
chains in the Genus database with same CATH superfamily
1LLWA 1IB4A 4XONA 2NSPA 3BH6B 4XQFA 1BHEA 1PLUA 4OJ6A 2BM4A 3VSTA 2NSTA 4W8RA 3GQ9A 1O8MA 1K5CA 2J8KA 1WMRA 4U4BA 4AVZA 3PSZA 3GQ7A 2VJJA 4V02C 1IA5A 1OFMA 1QQ1A 2UVFA 1HG8A 4YZXA 1KCCA 4YDTA 4XMYA 1QJVA 4OZYA 2VFQA 4XLHA 2INUA 3SY2A 3GQAA 4YZQA 2VBKA 2X6XA 1KTWA 4OJLA 2XTYA 3DU1X 4YCQA 4XLAA 4Z03A 5C1CA 3WWGA 2VBEA 3LYCA 3VMWA 1O8GA 3VMVA 1L1IA 2BM6A 2O17A 1PE9A 4XKWA 3ZSCA 1O8IA 1EA0A 4OZZA 2VFMA 1OGMX 1PXZA 4XKVA 3SZEA 3UW0A 1TSPA 3VSUA 2BX6A 1O8KA 2O1DA 2QX3A 3B90A 2NTPA 1GQ8A 1LLZA 1XG2A 4W8QA 4YFOA 3ZPPA 2NT6A 2XT2A 3SUCA 2NZMA 3VSVA 4W8SA 1QA3A 2NT9A 2BM7A 4YC5A 2B0RA 1RWRA 4U49A 4XLEA 4YELA 5AMVA 2O6WA 2XC1A 4W8TA 5JLVC 2ODLA 3LJYA 4KH3A 3JURA 1TYVA 2Z8GA 3N90A 2O04A 4C2LA 1BN8A 1IDKA 1TYXA 2X6YA 1KCDA 4XL9A 1TYUA 2VJIA 4EW9A 3H09A 1QA2A 1OGOX 3ML3A 4XN3A 1QA1A 2QY1A 1DABA 2J8IA 2F3LA 4URRA 1OFDA 2INVA 2XTWA 1NHCA 2X6WA 1JTAA 3PETA 4OM9A 1QCXA 4XLFA 4YZ0A 1O8JA 2QYUA 3SQVA 1CZFA 3PSSA 4XR6A 2QXZA 1KQ5A 1VBLA 2XTXA 5JMCB 2O0VA 2NTBA 4OJ5A 3EQNA 4XORA 3SYJA 1CLWA 1OOCA 3EQOA 3KRGA 5C1EA 4MR0A 4PMHA 1EE6A 3GQ8A 2PECA 2X85A 1HF2A 1TYWA 2PYHA 2YUHA 4MXNA 2UVEA 1JRGA 3LMWA 4NK8A 4JRAC 2IOUG 2IQ7A 1EZGA 4Z05A 1WXRA 2NTQA 3NB2A 3TH0A 1LM1A 5DNSA 3RIQA 3N6ZA 1RU4A 1O88A 1OFEA 2G0YA 3B8YA 1O8EA 1X0CA 4XM3A 1H80A 1OFLA 2BSPA 4NK6A 2VFNA 1O8LA 4Z06A 3JX8A 3P4GA 1RMGA 3T9GA 2V5IA 2O0WA 2VBMA 4OPWA 2EWEA 4XN0A 2XT4A 1AIRA 1IDJA 3B4NA 3FY3A 3GRHA 2X3HA 2VFPA 1O8DA 1DBOA 1QRCA 4YEIA 3NAWA 3AK5A 4OJOA 4YEJA 4XOTA 2W7ZA 3BH7B 4HWVA 4OJPA 2PYGA 1K4ZA 1DBGA 2BM5A 2VFOA 4I84A 1K8FA 1O8FA 4XLCA 4XOPA 4XNFA 2QZAA 1QRBA 4YZAA 1O8HA
chains in the Genus database with same CATH topology
1IB4A 4XONA 2NSPA 4XQFA 1BHEA 1PLUA 4OJ6A 3VSTA 2NSTA 4W8RA 3GQ9A 1O8MA 1K5CA 1WMRA 4U4BA 4AVZA 3GQ7A 2VJJA 1IA5A 1OFMA 2UVFA 1HG8A 4YZXA 1KCCA 4XMYA 1QJVA 4OZYA 4XLHA 2INUA 3GQAA 4YZQA 2VBKA 2X6XA 1KTWA 4OJLA 4XLAA 4Z03A 5C1CA 3WWGA 2VBEA 3VMWA 1O8GA 3VMVA 2O17A 4XKWA 1PE9A 3ZSCA 1O8IA 4OZZA 1OGMX 1PXZA 4XKVA 3UW0A 3VSUA 1O8KA 2O1DA 2QX3A 3B90A 2NTPA 1GQ8A 1XG2A 4W8QA 3ZPPA 2NT6A 3SUCA 2NZMA 3VSVA 4W8SA 2NT9A 1RWRA 4U49A 4XLEA 4YELA 5AMVA 4W8TA 2ODLA 3JURA 2Z8GA 2O04A 4C2LA 1BN8A 1IDKA 2X6YA 1KCDA 4XL9A 2VJIA 4EW9A 1OGOX 4XN3A 2QY1A 4URRA 2INVA 1NHCA 2X6WA 1JTAA 1QCXA 4XLFA 4YZ0A 1O8JA 1CZFA 4XR6A 2QXZA 1VBLA 2O0VA 2NTBA 4OJ5A 3EQNA 4XORA 1OOCA 3EQOA 3KRGA 5C1EA 4MR0A 4PMHA 1EE6A 3GQ8A 2PECA 2X85A 2PYHA 4MXNA 2UVEA 1JRGA 3LMWA 4NK8A 2IQ7A 4Z05A 2NTQA 1RU4A 1O88A 3B8YA 1O8EA 1X0CA 4XM3A 1H80A 1OFLA 2BSPA 4NK6A 4Z06A 1O8LA 1RMGA 3T9GA 2O0WA 2VBMA 2EWEA 4XN0A 1AIRA 1IDJA 3B4NA 3FY3A 3GRHA 2X3HA 1O8DA 1DBOA 4OJOA 4YEJA 4XOTA 4HWVA 4OJPA 2PYGA 4I84A 1DBGA 1O8FA 4XLCA 4XOPA 4XNFA 4YZAA 1O8HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IB4 A;  4XON A;  2NSP A;  4XQF A;  1BHE A;  1PLU A;  4OJ6 A;  3VST A;  2NST A;  4W8R A;  3GQ9 A;  1O8M A;  1K5C A;  1WMR A;  4U4B A;  4AVZ A;  3GQ7 A;  2VJJ A;  1IA5 A;  1OFM A;  2UVF A;  1HG8 A;  4YZX A;  1KCC A;  4XMY A;  1QJV A;  4OZY A;  4XLH A;  2INU A;  3GQA A;  4YZQ A;  2VBK A;  2X6X A;  1KTW A;  4OJL A;  4XLA A;  4Z03 A;  5C1C A;  3WWG A;  2VBE A;  3VMW A;  1O8G A;  3VMV A;  2O17 A;  4XKW A;  1PE9 A;  3ZSC A;  1O8I A;  4OZZ A;  1OGM X;  1PXZ A;  4XKV A;  3UW0 A;  3VSU A;  1O8K A;  2O1D A;  2QX3 A;  3B90 A;  2NTP A;  1GQ8 A;  1XG2 A;  4W8Q A;  3ZPP A;  2NT6 A;  3SUC A;  2NZM A;  3VSV A;  4W8S A;  2NT9 A;  1RWR A;  4U49 A;  4XLE A;  4YEL A;  5AMV A;  4W8T A;  2ODL A;  3JUR A;  2Z8G A;  2O04 A;  4C2L A;  1BN8 A;  1IDK A;  2X6Y A;  1KCD A;  4XL9 A;  2VJI A;  4EW9 A;  1OGO X;  4XN3 A;  2QY1 A;  4URR A;  2INV A;  1NHC A;  2X6W A;  1JTA A;  1QCX A;  4XLF A;  4YZ0 A;  1O8J A;  1CZF A;  4XR6 A;  2QXZ A;  1VBL A;  2O0V A;  2NTB A;  4OJ5 A;  3EQN A;  4XOR A;  1OOC A;  3EQO A;  3KRG A;  5C1E A;  4MR0 A;  4PMH A;  1EE6 A;  3GQ8 A;  2PEC A;  2X85 A;  2PYH A;  4MXN A;  2UVE A;  1JRG A;  3LMW A;  4NK8 A;  2IQ7 A;  4Z05 A;  2NTQ A;  1RU4 A;  1O88 A;  3B8Y A;  1O8E A;  1X0C A;  4XM3 A;  1H80 A;  1OFL A;  2BSP A;  4NK6 A;  4Z06 A;  1O8L A;  1RMG A;  3T9G A;  2O0W A;  2VBM A;  2EWE A;  4XN0 A;  1AIR A;  1IDJ A;  3B4N A;  3FY3 A;  3GRH A;  2X3H A;  1O8D A;  1DBO A;  4OJO A;  4YEJ A;  4XOT A;  4HWV A;  4OJP A;  2PYG A;  4I84 A;  1DBG A;  1O8F A;  4XLC A;  4XOP A;  4XNF A;  4YZA A;  1O8H A; 
#chains in the Genus database with same CATH topology
 1LLW A;  1IB4 A;  4XON A;  2NSP A;  3BH6 B;  4XQF A;  1BHE A;  1PLU A;  4OJ6 A;  2BM4 A;  3VST A;  2NST A;  4W8R A;  3GQ9 A;  1O8M A;  1K5C A;  2J8K A;  1WMR A;  4U4B A;  4AVZ A;  3PSZ A;  3GQ7 A;  2VJJ A;  4V02 C;  1IA5 A;  1OFM A;  1QQ1 A;  2UVF A;  1HG8 A;  4YZX A;  1KCC A;  4YDT A;  4XMY A;  1QJV A;  4OZY A;  2VFQ A;  4XLH A;  2INU A;  3SY2 A;  3GQA A;  4YZQ A;  2VBK A;  2X6X A;  1KTW A;  4OJL A;  2XTY A;  3DU1 X;  4YCQ A;  4XLA A;  4Z03 A;  5C1C A;  3WWG A;  2VBE A;  3LYC A;  3VMW A;  1O8G A;  3VMV A;  1L1I A;  2BM6 A;  2O17 A;  1PE9 A;  4XKW A;  3ZSC A;  1O8I A;  1EA0 A;  4OZZ A;  2VFM A;  1OGM X;  1PXZ A;  4XKV A;  3SZE A;  3UW0 A;  1TSP A;  3VSU A;  2BX6 A;  1O8K A;  2O1D A;  2QX3 A;  3B90 A;  2NTP A;  1GQ8 A;  1LLZ A;  1XG2 A;  4W8Q A;  4YFO A;  3ZPP A;  2NT6 A;  2XT2 A;  3SUC A;  2NZM A;  3VSV A;  4W8S A;  1QA3 A;  2NT9 A;  2BM7 A;  4YC5 A;  2B0R A;  1RWR A;  4U49 A;  4XLE A;  4YEL A;  5AMV A;  2O6W A;  2XC1 A;  4W8T A;  5JLV C;  2ODL A;  3LJY A;  4KH3 A;  3JUR A;  1TYV A;  2Z8G A;  3N90 A;  2O04 A;  4C2L A;  1BN8 A;  1IDK A;  1TYX A;  2X6Y A;  1KCD A;  4XL9 A;  1TYU A;  2VJI A;  4EW9 A;  3H09 A;  1QA2 A;  1OGO X;  3ML3 A;  4XN3 A;  1QA1 A;  2QY1 A;  1DAB A;  2J8I A;  2F3L A;  4URR A;  1OFD A;  2INV A;  2XTW A;  1NHC A;  2X6W A;  1JTA A;  3PET A;  4OM9 A;  1QCX A;  4XLF A;  4YZ0 A;  1O8J A;  2QYU A;  3SQV A;  1CZF A;  3PSS A;  4XR6 A;  2QXZ A;  1KQ5 A;  1VBL A;  2XTX A;  5JMC B;  2O0V A;  2NTB A;  4OJ5 A;  3EQN A;  4XOR A;  3SYJ A;  1CLW A;  1OOC A;  3EQO A;  3KRG A;  5C1E A;  4MR0 A;  4PMH A;  1EE6 A;  3GQ8 A;  2PEC A;  2X85 A;  1HF2 A;  1TYW A;  2PYH A;  2YUH A;  4MXN A;  2UVE A;  1JRG A;  3LMW A;  4NK8 A;  4JRA C;  2IOU G;  2IQ7 A;  1EZG A;  4Z05 A;  1WXR A;  2NTQ A;  3NB2 A;  3TH0 A;  1LM1 A;  5DNS A;  3RIQ A;  3N6Z A;  1RU4 A;  1O88 A;  1OFE A;  2G0Y A;  3B8Y A;  1O8E A;  1X0C A;  4XM3 A;  1H80 A;  1OFL A;  2BSP A;  4NK6 A;  2VFN A;  1O8L A;  4Z06 A;  3JX8 A;  3P4G A;  1RMG A;  3T9G A;  2V5I A;  2O0W A;  2VBM A;  4OPW A;  2EWE A;  4XN0 A;  2XT4 A;  1AIR A;  1IDJ A;  3B4N A;  3FY3 A;  3GRH A;  2X3H A;  2VFP A;  1O8D A;  1DBO A;  1QRC A;  4YEI A;  3NAW A;  3AK5 A;  4OJO A;  4YEJ A;  4XOT A;  2W7Z A;  3BH7 B;  4HWV A;  4OJP A;  2PYG A;  1K4Z A;  1DBG A;  2BM5 A;  2VFO A;  4I84 A;  1K8F A;  1O8F A;  4XLC A;  4XOP A;  4XNF A;  2QZA A;  1QRB A;  4YZA A;  1O8H A; 
#chains in the Genus database with same CATH homology
 1IB4 A;  4XON A;  2NSP A;  4XQF A;  1BHE A;  1PLU A;  4OJ6 A;  3VST A;  2NST A;  4W8R A;  3GQ9 A;  1O8M A;  1K5C A;  1WMR A;  4U4B A;  4AVZ A;  3GQ7 A;  2VJJ A;  1IA5 A;  1OFM A;  2UVF A;  1HG8 A;  4YZX A;  1KCC A;  4XMY A;  1QJV A;  4OZY A;  4XLH A;  2INU A;  3GQA A;  4YZQ A;  2VBK A;  2X6X A;  1KTW A;  4OJL A;  4XLA A;  4Z03 A;  5C1C A;  3WWG A;  2VBE A;  3VMW A;  1O8G A;  3VMV A;  2O17 A;  4XKW A;  1PE9 A;  3ZSC A;  1O8I A;  4OZZ A;  1OGM X;  1PXZ A;  4XKV A;  3UW0 A;  3VSU A;  1O8K A;  2O1D A;  2QX3 A;  3B90 A;  2NTP A;  1GQ8 A;  1XG2 A;  4W8Q A;  3ZPP A;  2NT6 A;  3SUC A;  2NZM A;  3VSV A;  4W8S A;  2NT9 A;  1RWR A;  4U49 A;  4XLE A;  4YEL A;  5AMV A;  4W8T A;  2ODL A;  3JUR A;  2Z8G A;  2O04 A;  4C2L A;  1BN8 A;  1IDK A;  2X6Y A;  1KCD A;  4XL9 A;  2VJI A;  4EW9 A;  1OGO X;  4XN3 A;  2QY1 A;  4URR A;  2INV A;  1NHC A;  2X6W A;  1JTA A;  1QCX A;  4XLF A;  4YZ0 A;  1O8J A;  1CZF A;  4XR6 A;  2QXZ A;  1VBL A;  2O0V A;  2NTB A;  4OJ5 A;  3EQN A;  4XOR A;  1OOC A;  3EQO A;  3KRG A;  5C1E A;  4MR0 A;  4PMH A;  1EE6 A;  3GQ8 A;  2PEC A;  2X85 A;  2PYH A;  4MXN A;  2UVE A;  1JRG A;  3LMW A;  4NK8 A;  2IQ7 A;  4Z05 A;  2NTQ A;  1RU4 A;  1O88 A;  3B8Y A;  1O8E A;  1X0C A;  4XM3 A;  1H80 A;  1OFL A;  2BSP A;  4NK6 A;  4Z06 A;  1O8L A;  1RMG A;  3T9G A;  2O0W A;  2VBM A;  2EWE A;  4XN0 A;  1AIR A;  1IDJ A;  3B4N A;  3FY3 A;  3GRH A;  2X3H A;  1O8D A;  1DBO A;  4OJO A;  4YEJ A;  4XOT A;  4HWV A;  4OJP A;  2PYG A;  4I84 A;  1DBG A;  1O8F A;  4XLC A;  4XOP A;  4XNF A;  4YZA A;  1O8H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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