1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
molecule keywords PROTEIN (PECTATE LYASE)
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
4W8QA 1K5CA 4Z06A 4YZXA 1RWRA 1O8DA 2NSPA 4U49A 4XQFA 2UVFA 4MR0A 1OGOX 4HWVA 2VBEA 4NK8A 4YZAA 4Z05A 2NSTA 3ZSCA 2O1DA 3VSVA 2NTPA 3B90A 4YELA 2X6WA 1PXZA 1XG2A 2INUA 3GQ8A 1RMGA 4XKVA 1IA5A 4Z03A 4AVZA 2VJJA 2INVA 3WWGA 4YEJA 5C1CA 1BN8A 3GQ7A 4XM3A 1CZFA 1IDKA 2QX3A 4XOPA 2VBMA 3VMVA 3VSTA 1QJVA 4XL9A 4W8RA 4OJPA 3GRHA 1IDJA 4XMYA 5AMVA 3T9GA 2NZMA 1HG8A 2VJIA 1O8FA 3EQOA 4XR6A 4OZZA 4XONA 2EWEA 1H80A 1OFMA 3FY3A 3JURA 4XKWA 1GQ8A 3GQAA 2BSPA 1QCXA 1DBOA 4W8SA 1DBGA 3SUCA 4EW9A 2NTBA 2IQ7A 2NT9A 4XLEA 1NHCA 1PE9A 3B8YA 4OZYA 1O88A 2X85A 2ODLA 1O8MA 4XN3A 4C2LA 1WMRA 2O04A 3LMWA 4XLHA 3KRGA 4YZ0A 4OJ6A 1EE6A 2NTQA 4YZQA 2X6YA 1KCDA 2QY1A 4OJ5A 1JRGA 4U4BA 2QXZA 1O8HA 2NT6A 1JTAA 4XN0A 1X0CA 1OGMX 1BHEA 1KCCA 2X3HA 2O0WA 4XLAA 1KTWA 1O8KA 4XLFA 2VBKA 4XLCA 2O17A 1O8GA 2PECA 1O8IA 4MXNA 1O8LA 3ZPPA 3VMWA 3GQ9A 4XOTA 1O8EA 2PYGA 4NK6A 1RU4A 4XNFA 1OFLA 3UW0A 4XORA 4OJLA 2O0VA 1IB4A 4I84A 2Z8GA 2UVEA 3VSUA 2PYHA 4OJOA 1VBLA 4URRA 4PMHA 1O8JA 5C1EA 1OOCA 3B4NA 1AIRA 2X6XA 1PLUA 3EQNA 4W8TA
chains in the Genus database with same CATH superfamily
2B0RA 4W8QA 1K5CA 4Z06A 4YZXA 1RWRA 2YUHA 1O8DA 4YEIA 1LLWA 1K4ZA 2NSPA 4U49A 4XQFA 1DABA 1QA2A 2VFOA 3BH7B 1WXRA 2UVFA 4MR0A 1CLWA 1OGOX 1KQ5A 2VBEA 3N90A 3BH6B 4HWVA 4KH3A 3SQVA 2W7ZA 3RIQA 4NK8A 1TYUA 4YZAA 2NSTA 4Z05A 2O1DA 3ZSCA 3VSVA 2NTPA 4OM9A 2V5IA 1QRBA 3B90A 3TH0A 4YELA 2X6WA 1PXZA 3ML3A 1XG2A 2INUA 2J8IA 3GQ8A 3LJYA 1RMGA 4XKVA 2O6WA 1IA5A 4Z03A 4AVZA 2VJJA 2INVA 1LLZA 3WWGA 4YEJA 5C1CA 1BN8A 3PSSA 3GQ7A 4XM3A 2QYUA 1CZFA 1IDKA 2QX3A 4XOPA 2VBMA 2XTXA 1L1IA 3VMVA 3VSTA 1QJVA 4XL9A 4JRAC 2IOUG 4OPWA 4W8RA 3PETA 3GRHA 4OJPA 2XT2A 3NAWA 1IDJA 4XMYA 5AMVA 3T9GA 2NZMA 1HG8A 2VJIA 1O8FA 2XC1A 3EQOA 4XR6A 2VFQA 4OZZA 4XONA 2EWEA 3H09A 1H80A 1OFMA 2J8KA 3FY3A 3JURA 4XKWA 1GQ8A 3GQAA 2QZAA 2BSPA 1QCXA 1DBOA 1TYXA 1DBGA 4W8SA 4YDTA 3SUCA 3N6ZA 3SZEA 4EW9A 4YC5A 2NTBA 2IQ7A 2NT9A 4XLEA 1NHCA 4YFOA 1PE9A 3B8YA 4OZYA 1O88A 2X85A 2ODLA 1O8MA 3DU1X 4XN3A 4C2LA 1WMRA 2O04A 3LMWA 4XLHA 3AK5A 3KRGA 4YZ0A 2XT4A 1TYVA 1QQ1A 1EE6A 2XTWA 2NTQA 4OJ6A 2VFMA 3NB2A 2X6YA 4YZQA 5DNSA 2QY1A 4OJ5A 5JMCB 1KCDA 1JRGA 4U4BA 1HF2A 1O8HA 1QRCA 1JTAA 2NT6A 1X0CA 2QXZA 4XN0A 5JLVC 1OGMX 1OFDA 1BHEA 2BX6A 1KCCA 1OFEA 2X3HA 2O0WA 4XLAA 1KTWA 1O8KA 4XLFA 2VBKA 4XLCA 2O17A 1O8GA 2PECA 2XTYA 3JX8A 1O8IA 4MXNA 1K8FA 1O8LA 3SYJA 3ZPPA 3VMWA 3GQ9A 4XOTA 1O8EA 2PYGA 4NK6A 1RU4A 1LM1A 2VFNA 4XNFA 4YCQA 1OFLA 1QA1A 3UW0A 4V02C 4OJLA 4XORA 2BM4A 2O0VA 1TSPA 1IB4A 4I84A 2VFPA 2Z8GA 2UVEA 2BM6A 2G0YA 2PYHA 4OJOA 3VSUA 1VBLA 3P4GA 1EZGA 3LYCA 4URRA 4PMHA 1O8JA 2BM7A 5C1EA 1OOCA 3B4NA 3PSZA 1EA0A 3SY2A 1AIRA 2BM5A 2X6XA 1TYWA 2F3LA 1QA3A 1PLUA 3EQNA 4W8TA
chains in the Genus database with same CATH topology
4W8QA 1K5CA 4Z06A 4YZXA 1RWRA 1O8DA 2NSPA 4U49A 4XQFA 2UVFA 4MR0A 1OGOX 4HWVA 2VBEA 4NK8A 4YZAA 4Z05A 2NSTA 3ZSCA 2O1DA 3VSVA 2NTPA 3B90A 4YELA 2X6WA 1PXZA 1XG2A 2INUA 3GQ8A 1RMGA 4XKVA 1IA5A 4Z03A 4AVZA 2VJJA 2INVA 3WWGA 4YEJA 5C1CA 1BN8A 3GQ7A 4XM3A 1CZFA 1IDKA 2QX3A 4XOPA 2VBMA 3VMVA 3VSTA 1QJVA 4XL9A 4W8RA 4OJPA 3GRHA 1IDJA 4XMYA 5AMVA 3T9GA 2NZMA 1HG8A 2VJIA 1O8FA 3EQOA 4XR6A 4OZZA 4XONA 2EWEA 1H80A 1OFMA 3FY3A 3JURA 4XKWA 1GQ8A 3GQAA 2BSPA 1QCXA 1DBOA 4W8SA 1DBGA 3SUCA 4EW9A 2NTBA 2IQ7A 2NT9A 4XLEA 1NHCA 1PE9A 3B8YA 4OZYA 1O88A 2X85A 2ODLA 1O8MA 4XN3A 4C2LA 1WMRA 2O04A 3LMWA 4XLHA 3KRGA 4YZ0A 4OJ6A 1EE6A 2NTQA 4YZQA 2X6YA 1KCDA 2QY1A 4OJ5A 1JRGA 4U4BA 2QXZA 1O8HA 2NT6A 1JTAA 4XN0A 1X0CA 1OGMX 1BHEA 1KCCA 2X3HA 2O0WA 4XLAA 1KTWA 1O8KA 4XLFA 2VBKA 4XLCA 2O17A 1O8GA 2PECA 1O8IA 4MXNA 1O8LA 3ZPPA 3VMWA 3GQ9A 4XOTA 1O8EA 2PYGA 4NK6A 1RU4A 4XNFA 1OFLA 3UW0A 4XORA 4OJLA 2O0VA 1IB4A 4I84A 2Z8GA 2UVEA 3VSUA 2PYHA 4OJOA 1VBLA 4URRA 4PMHA 1O8JA 5C1EA 1OOCA 3B4NA 1AIRA 2X6XA 1PLUA 3EQNA 4W8TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8Q A;  1K5C A;  4Z06 A;  4YZX A;  1RWR A;  1O8D A;  2NSP A;  4U49 A;  4XQF A;  2UVF A;  4MR0 A;  1OGO X;  4HWV A;  2VBE A;  4NK8 A;  4YZA A;  4Z05 A;  2NST A;  3ZSC A;  2O1D A;  3VSV A;  2NTP A;  3B90 A;  4YEL A;  2X6W A;  1PXZ A;  1XG2 A;  2INU A;  3GQ8 A;  1RMG A;  4XKV A;  1IA5 A;  4Z03 A;  4AVZ A;  2VJJ A;  2INV A;  3WWG A;  4YEJ A;  5C1C A;  1BN8 A;  3GQ7 A;  4XM3 A;  1CZF A;  1IDK A;  2QX3 A;  4XOP A;  2VBM A;  3VMV A;  3VST A;  1QJV A;  4XL9 A;  4W8R A;  4OJP A;  3GRH A;  1IDJ A;  4XMY A;  5AMV A;  3T9G A;  2NZM A;  1HG8 A;  2VJI A;  1O8F A;  3EQO A;  4XR6 A;  4OZZ A;  4XON A;  2EWE A;  1H80 A;  1OFM A;  3FY3 A;  3JUR A;  4XKW A;  1GQ8 A;  3GQA A;  2BSP A;  1QCX A;  1DBO A;  4W8S A;  1DBG A;  3SUC A;  4EW9 A;  2NTB A;  2IQ7 A;  2NT9 A;  4XLE A;  1NHC A;  1PE9 A;  3B8Y A;  4OZY A;  1O88 A;  2X85 A;  2ODL A;  1O8M A;  4XN3 A;  4C2L A;  1WMR A;  2O04 A;  3LMW A;  4XLH A;  3KRG A;  4YZ0 A;  4OJ6 A;  1EE6 A;  2NTQ A;  4YZQ A;  2X6Y A;  1KCD A;  2QY1 A;  4OJ5 A;  1JRG A;  4U4B A;  2QXZ A;  1O8H A;  2NT6 A;  1JTA A;  4XN0 A;  1X0C A;  1OGM X;  1BHE A;  1KCC A;  2X3H A;  2O0W A;  4XLA A;  1KTW A;  1O8K A;  4XLF A;  2VBK A;  4XLC A;  2O17 A;  1O8G A;  2PEC A;  1O8I A;  4MXN A;  1O8L A;  3ZPP A;  3VMW A;  3GQ9 A;  4XOT A;  1O8E A;  2PYG A;  4NK6 A;  1RU4 A;  4XNF A;  1OFL A;  3UW0 A;  4XOR A;  4OJL A;  2O0V A;  1IB4 A;  4I84 A;  2Z8G A;  2UVE A;  3VSU A;  2PYH A;  4OJO A;  1VBL A;  4URR A;  4PMH A;  1O8J A;  5C1E A;  1OOC A;  3B4N A;  1AIR A;  2X6X A;  1PLU A;  3EQN A;  4W8T A; 
#chains in the Genus database with same CATH topology
 2B0R A;  4W8Q A;  1K5C A;  4Z06 A;  4YZX A;  1RWR A;  2YUH A;  1O8D A;  4YEI A;  1LLW A;  1K4Z A;  2NSP A;  4U49 A;  4XQF A;  1DAB A;  1QA2 A;  2VFO A;  3BH7 B;  1WXR A;  2UVF A;  4MR0 A;  1CLW A;  1OGO X;  1KQ5 A;  2VBE A;  3N90 A;  3BH6 B;  4HWV A;  4KH3 A;  3SQV A;  2W7Z A;  3RIQ A;  4NK8 A;  1TYU A;  4YZA A;  2NST A;  4Z05 A;  2O1D A;  3ZSC A;  3VSV A;  2NTP A;  4OM9 A;  2V5I A;  1QRB A;  3B90 A;  3TH0 A;  4YEL A;  2X6W A;  1PXZ A;  3ML3 A;  1XG2 A;  2INU A;  2J8I A;  3GQ8 A;  3LJY A;  1RMG A;  4XKV A;  2O6W A;  1IA5 A;  4Z03 A;  4AVZ A;  2VJJ A;  2INV A;  1LLZ A;  3WWG A;  4YEJ A;  5C1C A;  1BN8 A;  3PSS A;  3GQ7 A;  4XM3 A;  2QYU A;  1CZF A;  1IDK A;  2QX3 A;  4XOP A;  2VBM A;  2XTX A;  1L1I A;  3VMV A;  3VST A;  1QJV A;  4XL9 A;  4JRA C;  2IOU G;  4OPW A;  4W8R A;  3PET A;  3GRH A;  4OJP A;  2XT2 A;  3NAW A;  1IDJ A;  4XMY A;  5AMV A;  3T9G A;  2NZM A;  1HG8 A;  2VJI A;  1O8F A;  2XC1 A;  3EQO A;  4XR6 A;  2VFQ A;  4OZZ A;  4XON A;  2EWE A;  3H09 A;  1H80 A;  1OFM A;  2J8K A;  3FY3 A;  3JUR A;  4XKW A;  1GQ8 A;  3GQA A;  2QZA A;  2BSP A;  1QCX A;  1DBO A;  1TYX A;  1DBG A;  4W8S A;  4YDT A;  3SUC A;  3N6Z A;  3SZE A;  4EW9 A;  4YC5 A;  2NTB A;  2IQ7 A;  2NT9 A;  4XLE A;  1NHC A;  4YFO A;  1PE9 A;  3B8Y A;  4OZY A;  1O88 A;  2X85 A;  2ODL A;  1O8M A;  3DU1 X;  4XN3 A;  4C2L A;  1WMR A;  2O04 A;  3LMW A;  4XLH A;  3AK5 A;  3KRG A;  4YZ0 A;  2XT4 A;  1TYV A;  1QQ1 A;  1EE6 A;  2XTW A;  2NTQ A;  4OJ6 A;  2VFM A;  3NB2 A;  2X6Y A;  4YZQ A;  5DNS A;  2QY1 A;  4OJ5 A;  5JMC B;  1KCD A;  1JRG A;  4U4B A;  1HF2 A;  1O8H A;  1QRC A;  1JTA A;  2NT6 A;  1X0C A;  2QXZ A;  4XN0 A;  5JLV C;  1OGM X;  1OFD A;  1BHE A;  2BX6 A;  1KCC A;  1OFE A;  2X3H A;  2O0W A;  4XLA A;  1KTW A;  1O8K A;  4XLF A;  2VBK A;  4XLC A;  2O17 A;  1O8G A;  2PEC A;  2XTY A;  3JX8 A;  1O8I A;  4MXN A;  1K8F A;  1O8L A;  3SYJ A;  3ZPP A;  3VMW A;  3GQ9 A;  4XOT A;  1O8E A;  2PYG A;  4NK6 A;  1RU4 A;  1LM1 A;  2VFN A;  4XNF A;  4YCQ A;  1OFL A;  1QA1 A;  3UW0 A;  4V02 C;  4OJL A;  4XOR A;  2BM4 A;  2O0V A;  1TSP A;  1IB4 A;  4I84 A;  2VFP A;  2Z8G A;  2UVE A;  2BM6 A;  2G0Y A;  2PYH A;  4OJO A;  3VSU A;  1VBL A;  3P4G A;  1EZG A;  3LYC A;  4URR A;  4PMH A;  1O8J A;  2BM7 A;  5C1E A;  1OOC A;  3B4N A;  3PSZ A;  1EA0 A;  3SY2 A;  1AIR A;  2BM5 A;  2X6X A;  1TYW A;  2F3L A;  1QA3 A;  1PLU A;  3EQN A;  4W8T A; 
#chains in the Genus database with same CATH homology
 4W8Q A;  1K5C A;  4Z06 A;  4YZX A;  1RWR A;  1O8D A;  2NSP A;  4U49 A;  4XQF A;  2UVF A;  4MR0 A;  1OGO X;  4HWV A;  2VBE A;  4NK8 A;  4YZA A;  4Z05 A;  2NST A;  3ZSC A;  2O1D A;  3VSV A;  2NTP A;  3B90 A;  4YEL A;  2X6W A;  1PXZ A;  1XG2 A;  2INU A;  3GQ8 A;  1RMG A;  4XKV A;  1IA5 A;  4Z03 A;  4AVZ A;  2VJJ A;  2INV A;  3WWG A;  4YEJ A;  5C1C A;  1BN8 A;  3GQ7 A;  4XM3 A;  1CZF A;  1IDK A;  2QX3 A;  4XOP A;  2VBM A;  3VMV A;  3VST A;  1QJV A;  4XL9 A;  4W8R A;  4OJP A;  3GRH A;  1IDJ A;  4XMY A;  5AMV A;  3T9G A;  2NZM A;  1HG8 A;  2VJI A;  1O8F A;  3EQO A;  4XR6 A;  4OZZ A;  4XON A;  2EWE A;  1H80 A;  1OFM A;  3FY3 A;  3JUR A;  4XKW A;  1GQ8 A;  3GQA A;  2BSP A;  1QCX A;  1DBO A;  4W8S A;  1DBG A;  3SUC A;  4EW9 A;  2NTB A;  2IQ7 A;  2NT9 A;  4XLE A;  1NHC A;  1PE9 A;  3B8Y A;  4OZY A;  1O88 A;  2X85 A;  2ODL A;  1O8M A;  4XN3 A;  4C2L A;  1WMR A;  2O04 A;  3LMW A;  4XLH A;  3KRG A;  4YZ0 A;  4OJ6 A;  1EE6 A;  2NTQ A;  4YZQ A;  2X6Y A;  1KCD A;  2QY1 A;  4OJ5 A;  1JRG A;  4U4B A;  2QXZ A;  1O8H A;  2NT6 A;  1JTA A;  4XN0 A;  1X0C A;  1OGM X;  1BHE A;  1KCC A;  2X3H A;  2O0W A;  4XLA A;  1KTW A;  1O8K A;  4XLF A;  2VBK A;  4XLC A;  2O17 A;  1O8G A;  2PEC A;  1O8I A;  4MXN A;  1O8L A;  3ZPP A;  3VMW A;  3GQ9 A;  4XOT A;  1O8E A;  2PYG A;  4NK6 A;  1RU4 A;  4XNF A;  1OFL A;  3UW0 A;  4XOR A;  4OJL A;  2O0V A;  1IB4 A;  4I84 A;  2Z8G A;  2UVE A;  3VSU A;  2PYH A;  4OJO A;  1VBL A;  4URR A;  4PMH A;  1O8J A;  5C1E A;  1OOC A;  3B4N A;  1AIR A;  2X6X A;  1PLU A;  3EQN A;  4W8T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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