1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PROTEIN (PECTATE LYASE)
publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
molecule tags Lyase
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
4OZZA 3GQ9A 4XM3A 4OJLA 4XR6A 2PYHA 3VMWA 1PE9A 3VSVA 1O8DA 4XL9A 4XQFA 1OGMX 4XLFA 1EE6A 4U49A 1O8FA 1JRGA 1IA5A 1RWRA 2UVFA 4XNFA 4XORA 2VJJA 2NT9A 4XLAA 1X0CA 4NK6A 3VSUA 3ZSCA 4XONA 1IDJA 4OZYA 2BSPA 2X85A 2O1DA 4OJ5A 1O88A 1DBOA 4XLHA 5C1CA 4XKVA 4YELA 2EWEA 4EW9A 1DBGA 3GQ8A 3GQAA 2VBMA 1KCCA 4MR0A 1BHEA 3EQNA 3SUCA 1O8HA 2NTBA 1BN8A 1O8IA 4MXNA 4XN0A 2PYGA 2NT6A 2VBKA 4W8QA 1O8JA 4W8SA 2VJIA 3B90A 2QX3A 3EQOA 3JURA 2IQ7A 3VMVA 3FY3A 1OFMA 2O17A 1XG2A 2Z8GA 4Z05A 1O8GA 1CZFA 2NSTA 1NHCA 3T9GA 2X3HA 4U4BA 1O8MA 1O8EA 3GRHA 4W8TA 3VSTA 1IB4A 4W8RA 2PECA 1O8KA 1H80A 4HWVA 2VBEA 3B4NA 1QJVA 3KRGA 4URRA 3GQ7A 1K5CA 2NTPA 4OJ6A 2X6WA 2O0VA 1PXZA 4I84A 4XOTA 1RMGA 4PMHA 1IDKA 2ODLA 4OJPA 4XN3A 5AMVA 4YZ0A 2NSPA 4Z06A 4C2LA 4NK8A 3UW0A 4OJOA 1JTAA 2NTQA 2NZMA 4XOPA 1OFLA 1VBLA 2X6YA 4YZQA 2O04A 1KTWA 2QXZA 4XKWA 5C1EA 2X6XA 1OGOX 1HG8A 2QY1A 2UVEA 3WWGA 4XLEA 2INVA 1OOCA 1AIRA 1RU4A 1QCXA 4YEJA 3LMWA 4XLCA 4YZAA 4AVZA 3B8YA 4Z03A 1GQ8A 2INUA 4YZXA 3ZPPA 1PLUA 1KCDA 1O8LA 4XMYA 2O0WA 1WMRA
chains in the Genus database with same CATH superfamily
4OZZA 3GQ9A 2O6WA 4XM3A 4OJLA 2F3LA 4XR6A 2PYHA 3VMWA 1TYWA 1QA2A 1PE9A 3VSVA 1O8DA 3ML3A 1L1IA 4XL9A 4XQFA 2XTYA 3P4GA 4YCQA 3SQVA 1OGMX 4XLFA 2VFNA 1EE6A 3PETA 3AK5A 2J8KA 4KH3A 4U49A 1O8FA 1JRGA 2QYUA 5DNSA 1RWRA 3RIQA 5JLVC 1IA5A 1TYXA 2UVFA 4XNFA 2G0YA 4XORA 2VJJA 2NT9A 4XLAA 1WXRA 1X0CA 4NK6A 3VSUA 3ZSCA 4XONA 1IDJA 4OZYA 2BSPA 2X85A 3N6ZA 2O1DA 4OJ5A 1O88A 1K8FA 1KQ5A 1DBOA 4XLHA 2VFOA 5C1CA 1CLWA 4XKVA 4YELA 2QZAA 2EWEA 3H09A 4EW9A 1DBGA 3GQ8A 1TYUA 3GQAA 2VBMA 1KCCA 4MR0A 1LM1A 1BHEA 3EQNA 3SUCA 2BX6A 1O8HA 2NTBA 1DABA 1BN8A 2W7ZA 4OM9A 1O8IA 4MXNA 4XN0A 2PYGA 2NT6A 3JX8A 3N90A 2VBKA 2J8IA 4W8QA 2XTWA 1O8JA 1LLZA 2VFMA 4W8SA 3LYCA 2VJIA 1K4ZA 3NAWA 3B90A 2QX3A 3EQOA 3JURA 3SY2A 1OFDA 2IQ7A 3VMVA 3FY3A 1OFMA 3NB2A 3SYJA 1XG2A 2O17A 2Z8GA 3SZEA 2XT2A 4Z05A 3PSSA 4OPWA 4V02C 2B0RA 1EA0A 1O8GA 1CZFA 2NSTA 1NHCA 1QRCA 3T9GA 2X3HA 3BH7B 4U4BA 1O8MA 1O8EA 3GRHA 4W8TA 3VSTA 1IB4A 4W8RA 2PECA 1O8KA 1H80A 4HWVA 2VBEA 1QA3A 3B4NA 1QJVA 3KRGA 4URRA 2V5IA 3GQ7A 4YEIA 2NTPA 1K5CA 4OJ6A 1QRBA 1QQ1A 2BM5A 2X6WA 2O0VA 1PXZA 4I84A 4XOTA 2VFQA 1TYVA 1HF2A 3TH0A 1RMGA 4PMHA 1IDKA 3BH6B 2ODLA 4OJPA 5JMCB 3LJYA 4XN3A 4YC5A 5AMVA 1LLWA 4YZ0A 2NSPA 4Z06A 4C2LA 4NK8A 3UW0A 2VFPA 4OJOA 1JTAA 2NTQA 2NZMA 2BM7A 1OFLA 2XT4A 4XOPA 1VBLA 3PSZA 2X6YA 4YZQA 2O04A 4JRAC 1KTWA 2QXZA 3DU1X 4XKWA 5C1EA 2X6XA 1TSPA 1OGOX 1HG8A 2BM6A 2IOUG 2QY1A 2UVEA 4XLEA 3WWGA 2INVA 2XTXA 1OOCA 2BM4A 1AIRA 1RU4A 1QCXA 4YEJA 3LMWA 4XLCA 4YDTA 4YZAA 4AVZA 3B8YA 4Z03A 1GQ8A 2YUHA 4YFOA 2INUA 4YZXA 3ZPPA 1PLUA 1KCDA 1OFEA 2XC1A 1O8LA 1QA1A 1EZGA 4XMYA 2O0WA 1WMRA
chains in the Genus database with same CATH topology
4OZZA 3GQ9A 4XM3A 4OJLA 4XR6A 2PYHA 3VMWA 1PE9A 3VSVA 1O8DA 4XL9A 4XQFA 1OGMX 4XLFA 1EE6A 4U49A 1O8FA 1JRGA 1IA5A 1RWRA 2UVFA 4XNFA 4XORA 2VJJA 2NT9A 4XLAA 1X0CA 4NK6A 3VSUA 3ZSCA 4XONA 1IDJA 4OZYA 2BSPA 2X85A 2O1DA 4OJ5A 1O88A 1DBOA 4XLHA 5C1CA 4XKVA 4YELA 2EWEA 4EW9A 1DBGA 3GQ8A 3GQAA 2VBMA 1KCCA 4MR0A 1BHEA 3EQNA 3SUCA 1O8HA 2NTBA 1BN8A 1O8IA 4MXNA 4XN0A 2PYGA 2NT6A 2VBKA 4W8QA 1O8JA 4W8SA 2VJIA 3B90A 2QX3A 3EQOA 3JURA 2IQ7A 3VMVA 3FY3A 1OFMA 2O17A 1XG2A 2Z8GA 4Z05A 1O8GA 1CZFA 2NSTA 1NHCA 3T9GA 2X3HA 4U4BA 1O8MA 1O8EA 3GRHA 4W8TA 3VSTA 1IB4A 4W8RA 2PECA 1O8KA 1H80A 4HWVA 2VBEA 3B4NA 1QJVA 3KRGA 4URRA 3GQ7A 1K5CA 2NTPA 4OJ6A 2X6WA 2O0VA 1PXZA 4I84A 4XOTA 1RMGA 4PMHA 1IDKA 2ODLA 4OJPA 4XN3A 5AMVA 4YZ0A 2NSPA 4Z06A 4C2LA 4NK8A 3UW0A 4OJOA 1JTAA 2NTQA 2NZMA 4XOPA 1OFLA 1VBLA 2X6YA 4YZQA 2O04A 1KTWA 2QXZA 4XKWA 5C1EA 2X6XA 1OGOX 1HG8A 2QY1A 2UVEA 3WWGA 4XLEA 2INVA 1OOCA 1AIRA 1RU4A 1QCXA 4YEJA 3LMWA 4XLCA 4YZAA 4AVZA 3B8YA 4Z03A 1GQ8A 2INUA 4YZXA 3ZPPA 1PLUA 1KCDA 1O8LA 4XMYA 2O0WA 1WMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OZZ A;  3GQ9 A;  4XM3 A;  4OJL A;  4XR6 A;  2PYH A;  3VMW A;  1PE9 A;  3VSV A;  1O8D A;  4XL9 A;  4XQF A;  1OGM X;  4XLF A;  1EE6 A;  4U49 A;  1O8F A;  1JRG A;  1IA5 A;  1RWR A;  2UVF A;  4XNF A;  4XOR A;  2VJJ A;  2NT9 A;  4XLA A;  1X0C A;  4NK6 A;  3VSU A;  3ZSC A;  4XON A;  1IDJ A;  4OZY A;  2BSP A;  2X85 A;  2O1D A;  4OJ5 A;  1O88 A;  1DBO A;  4XLH A;  5C1C A;  4XKV A;  4YEL A;  2EWE A;  4EW9 A;  1DBG A;  3GQ8 A;  3GQA A;  2VBM A;  1KCC A;  4MR0 A;  1BHE A;  3EQN A;  3SUC A;  1O8H A;  2NTB A;  1BN8 A;  1O8I A;  4MXN A;  4XN0 A;  2PYG A;  2NT6 A;  2VBK A;  4W8Q A;  1O8J A;  4W8S A;  2VJI A;  3B90 A;  2QX3 A;  3EQO A;  3JUR A;  2IQ7 A;  3VMV A;  3FY3 A;  1OFM A;  2O17 A;  1XG2 A;  2Z8G A;  4Z05 A;  1O8G A;  1CZF A;  2NST A;  1NHC A;  3T9G A;  2X3H A;  4U4B A;  1O8M A;  1O8E A;  3GRH A;  4W8T A;  3VST A;  1IB4 A;  4W8R A;  2PEC A;  1O8K A;  1H80 A;  4HWV A;  2VBE A;  3B4N A;  1QJV A;  3KRG A;  4URR A;  3GQ7 A;  1K5C A;  2NTP A;  4OJ6 A;  2X6W A;  2O0V A;  1PXZ A;  4I84 A;  4XOT A;  1RMG A;  4PMH A;  1IDK A;  2ODL A;  4OJP A;  4XN3 A;  5AMV A;  4YZ0 A;  2NSP A;  4Z06 A;  4C2L A;  4NK8 A;  3UW0 A;  4OJO A;  1JTA A;  2NTQ A;  2NZM A;  4XOP A;  1OFL A;  1VBL A;  2X6Y A;  4YZQ A;  2O04 A;  1KTW A;  2QXZ A;  4XKW A;  5C1E A;  2X6X A;  1OGO X;  1HG8 A;  2QY1 A;  2UVE A;  3WWG A;  4XLE A;  2INV A;  1OOC A;  1AIR A;  1RU4 A;  1QCX A;  4YEJ A;  3LMW A;  4XLC A;  4YZA A;  4AVZ A;  3B8Y A;  4Z03 A;  1GQ8 A;  2INU A;  4YZX A;  3ZPP A;  1PLU A;  1KCD A;  1O8L A;  4XMY A;  2O0W A;  1WMR A; 
#chains in the Genus database with same CATH topology
 4OZZ A;  3GQ9 A;  2O6W A;  4XM3 A;  4OJL A;  2F3L A;  4XR6 A;  2PYH A;  3VMW A;  1TYW A;  1QA2 A;  1PE9 A;  3VSV A;  1O8D A;  3ML3 A;  1L1I A;  4XL9 A;  4XQF A;  2XTY A;  3P4G A;  4YCQ A;  3SQV A;  1OGM X;  4XLF A;  2VFN A;  1EE6 A;  3PET A;  3AK5 A;  2J8K A;  4KH3 A;  4U49 A;  1O8F A;  1JRG A;  2QYU A;  5DNS A;  1RWR A;  3RIQ A;  5JLV C;  1IA5 A;  1TYX A;  2UVF A;  4XNF A;  2G0Y A;  4XOR A;  2VJJ A;  2NT9 A;  4XLA A;  1WXR A;  1X0C A;  4NK6 A;  3VSU A;  3ZSC A;  4XON A;  1IDJ A;  4OZY A;  2BSP A;  2X85 A;  3N6Z A;  2O1D A;  4OJ5 A;  1O88 A;  1K8F A;  1KQ5 A;  1DBO A;  4XLH A;  2VFO A;  5C1C A;  1CLW A;  4XKV A;  4YEL A;  2QZA A;  2EWE A;  3H09 A;  4EW9 A;  1DBG A;  3GQ8 A;  1TYU A;  3GQA A;  2VBM A;  1KCC A;  4MR0 A;  1LM1 A;  1BHE A;  3EQN A;  3SUC A;  2BX6 A;  1O8H A;  2NTB A;  1DAB A;  1BN8 A;  2W7Z A;  4OM9 A;  1O8I A;  4MXN A;  4XN0 A;  2PYG A;  2NT6 A;  3JX8 A;  3N90 A;  2VBK A;  2J8I A;  4W8Q A;  2XTW A;  1O8J A;  1LLZ A;  2VFM A;  4W8S A;  3LYC A;  2VJI A;  1K4Z A;  3NAW A;  3B90 A;  2QX3 A;  3EQO A;  3JUR A;  3SY2 A;  1OFD A;  2IQ7 A;  3VMV A;  3FY3 A;  1OFM A;  3NB2 A;  3SYJ A;  1XG2 A;  2O17 A;  2Z8G A;  3SZE A;  2XT2 A;  4Z05 A;  3PSS A;  4OPW A;  4V02 C;  2B0R A;  1EA0 A;  1O8G A;  1CZF A;  2NST A;  1NHC A;  1QRC A;  3T9G A;  2X3H A;  3BH7 B;  4U4B A;  1O8M A;  1O8E A;  3GRH A;  4W8T A;  3VST A;  1IB4 A;  4W8R A;  2PEC A;  1O8K A;  1H80 A;  4HWV A;  2VBE A;  1QA3 A;  3B4N A;  1QJV A;  3KRG A;  4URR A;  2V5I A;  3GQ7 A;  4YEI A;  2NTP A;  1K5C A;  4OJ6 A;  1QRB A;  1QQ1 A;  2BM5 A;  2X6W A;  2O0V A;  1PXZ A;  4I84 A;  4XOT A;  2VFQ A;  1TYV A;  1HF2 A;  3TH0 A;  1RMG A;  4PMH A;  1IDK A;  3BH6 B;  2ODL A;  4OJP A;  5JMC B;  3LJY A;  4XN3 A;  4YC5 A;  5AMV A;  1LLW A;  4YZ0 A;  2NSP A;  4Z06 A;  4C2L A;  4NK8 A;  3UW0 A;  2VFP A;  4OJO A;  1JTA A;  2NTQ A;  2NZM A;  2BM7 A;  1OFL A;  2XT4 A;  4XOP A;  1VBL A;  3PSZ A;  2X6Y A;  4YZQ A;  2O04 A;  4JRA C;  1KTW A;  2QXZ A;  3DU1 X;  4XKW A;  5C1E A;  2X6X A;  1TSP A;  1OGO X;  1HG8 A;  2BM6 A;  2IOU G;  2QY1 A;  2UVE A;  4XLE A;  3WWG A;  2INV A;  2XTX A;  1OOC A;  2BM4 A;  1AIR A;  1RU4 A;  1QCX A;  4YEJ A;  3LMW A;  4XLC A;  4YDT A;  4YZA A;  4AVZ A;  3B8Y A;  4Z03 A;  1GQ8 A;  2YUH A;  4YFO A;  2INU A;  4YZX A;  3ZPP A;  1PLU A;  1KCD A;  1OFE A;  2XC1 A;  1O8L A;  1QA1 A;  1EZG A;  4XMY A;  2O0W A;  1WMR A; 
#chains in the Genus database with same CATH homology
 4OZZ A;  3GQ9 A;  4XM3 A;  4OJL A;  4XR6 A;  2PYH A;  3VMW A;  1PE9 A;  3VSV A;  1O8D A;  4XL9 A;  4XQF A;  1OGM X;  4XLF A;  1EE6 A;  4U49 A;  1O8F A;  1JRG A;  1IA5 A;  1RWR A;  2UVF A;  4XNF A;  4XOR A;  2VJJ A;  2NT9 A;  4XLA A;  1X0C A;  4NK6 A;  3VSU A;  3ZSC A;  4XON A;  1IDJ A;  4OZY A;  2BSP A;  2X85 A;  2O1D A;  4OJ5 A;  1O88 A;  1DBO A;  4XLH A;  5C1C A;  4XKV A;  4YEL A;  2EWE A;  4EW9 A;  1DBG A;  3GQ8 A;  3GQA A;  2VBM A;  1KCC A;  4MR0 A;  1BHE A;  3EQN A;  3SUC A;  1O8H A;  2NTB A;  1BN8 A;  1O8I A;  4MXN A;  4XN0 A;  2PYG A;  2NT6 A;  2VBK A;  4W8Q A;  1O8J A;  4W8S A;  2VJI A;  3B90 A;  2QX3 A;  3EQO A;  3JUR A;  2IQ7 A;  3VMV A;  3FY3 A;  1OFM A;  2O17 A;  1XG2 A;  2Z8G A;  4Z05 A;  1O8G A;  1CZF A;  2NST A;  1NHC A;  3T9G A;  2X3H A;  4U4B A;  1O8M A;  1O8E A;  3GRH A;  4W8T A;  3VST A;  1IB4 A;  4W8R A;  2PEC A;  1O8K A;  1H80 A;  4HWV A;  2VBE A;  3B4N A;  1QJV A;  3KRG A;  4URR A;  3GQ7 A;  1K5C A;  2NTP A;  4OJ6 A;  2X6W A;  2O0V A;  1PXZ A;  4I84 A;  4XOT A;  1RMG A;  4PMH A;  1IDK A;  2ODL A;  4OJP A;  4XN3 A;  5AMV A;  4YZ0 A;  2NSP A;  4Z06 A;  4C2L A;  4NK8 A;  3UW0 A;  4OJO A;  1JTA A;  2NTQ A;  2NZM A;  4XOP A;  1OFL A;  1VBL A;  2X6Y A;  4YZQ A;  2O04 A;  1KTW A;  2QXZ A;  4XKW A;  5C1E A;  2X6X A;  1OGO X;  1HG8 A;  2QY1 A;  2UVE A;  3WWG A;  4XLE A;  2INV A;  1OOC A;  1AIR A;  1RU4 A;  1QCX A;  4YEJ A;  3LMW A;  4XLC A;  4YZA A;  4AVZ A;  3B8Y A;  4Z03 A;  1GQ8 A;  2INU A;  4YZX A;  3ZPP A;  1PLU A;  1KCD A;  1O8L A;  4XMY A;  2O0W A;  1WMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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