1BN8A

Bacillus subtilis pectate lyase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PROTEIN (PECTATE LYASE)
publication title The structure of Bacillus subtilis pectate lyase in complex with calcium.
pubmed doi rcsb
molecule tags Lyase
total genus 156
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1bn8A00
1QJVA 4YZQA 4W8TA 4XN0A 1O8GA 1KCDA 3ZPPA 4NK8A 1OOCA 1IDJA 2NSTA 4W8QA 1DBOA 3B90A 4XOTA 3VSTA 4PMHA 5C1EA 1O8EA 1XG2A 2NTPA 2VBKA 3FY3A 1H80A 4HWVA 4XL9A 3GQ7A 1AIRA 4XMYA 4Z06A 4EW9A 1BHEA 2VJIA 1OFLA 1WMRA 4U49A 2NT9A 1O8KA 3SUCA 2VJJA 3B8YA 1O8IA 1PLUA 2UVFA 3GQAA 4OJOA 1X0CA 4W8SA 1O8HA 4URRA 1O8FA 4NK6A 4OJLA 1O88A 4I84A 3B4NA 4YZAA 2ODLA 2X85A 3JURA 3GRHA 2QXZA 4C2LA 4OJPA 4XLAA 1KTWA 4Z03A 1NHCA 3GQ8A 4Z05A 2NT6A 2X6YA 4AVZA 4XLCA 2INUA 1OGOX 1IA5A 2O17A 4YZ0A 1GQ8A 4XM3A 3KRGA 2QY1A 4W8RA 2VBMA 5C1CA 4OJ5A 1PXZA 2X6WA 4XKVA 4XORA 2Z8GA 3ZSCA 2NTQA 4XLFA 1EE6A 3LMWA 1O8JA 1RWRA 2UVEA 1JTAA 1JRGA 2IQ7A 4OZYA 4XN3A 2PYHA 4XLEA 4YELA 4XOPA 3VMWA 2VBEA 2NTBA 3VSVA 2QX3A 1OGMX 4XKWA 2PECA 1IDKA 3WWGA 1HG8A 2O0VA 1RU4A 1CZFA 1O8DA 1OFMA 2EWEA 2O1DA 4XLHA 1QCXA 3UW0A 3T9GA 4XQFA 4OJ6A 4XR6A 4YZXA 2NSPA 5AMVA 2NZMA 1K5CA 3EQOA 1VBLA 4MR0A 1KCCA 3VSUA 3GQ9A 2BSPA 4OZZA 2INVA 2O0WA 2X3HA 4XONA 4U4BA 3VMVA 1BN8A 1O8MA 3EQNA 2PYGA 4MXNA 4XNFA 2X6XA 4YEJA 1IB4A 1RMGA 1O8LA 1PE9A 2O04A 1DBGA
chains in the Genus database with same CATH superfamily
1QJVA 4YZQA 1K8FA 1TYUA 2F3LA 5JMCB 2QZAA 4W8TA 4XN0A 1O8GA 1KCDA 3ZPPA 1TYVA 2VFNA 3BH7B 4NK8A 1EA0A 1OOCA 1IDJA 2NSTA 2V5IA 4W8QA 1DBOA 4YC5A 3B90A 4XOTA 2J8IA 5DNSA 3VSTA 2VFOA 4PMHA 5C1EA 3RIQA 1QA1A 1WXRA 1O8EA 1XG2A 2NTPA 1QRCA 2VBKA 3FY3A 3AK5A 1H80A 4HWVA 4XL9A 3GQ7A 1KQ5A 1AIRA 1QA3A 4XMYA 4Z06A 4EW9A 1BHEA 2VJIA 1OFLA 1WMRA 2VFMA 3NAWA 2NT9A 4U49A 1O8KA 3PSSA 3SUCA 2VJJA 3B8YA 1O8IA 1PLUA 2UVFA 3GQAA 4OJOA 1X0CA 4JRAC 4W8SA 1O8HA 4URRA 1O8FA 4NK6A 4OJLA 1O88A 4I84A 4V02C 1OFEA 3B4NA 4YZAA 2ODLA 2X85A 2XT2A 3JURA 2BM5A 3GRHA 2IOUG 2QXZA 4C2LA 4OJPA 1CLWA 2VFQA 4YFOA 4XLAA 1KTWA 4Z03A 1NHCA 3GQ8A 4Z05A 2NT6A 2X6YA 4AVZA 3SYJA 4XLCA 1K4ZA 2INUA 1OGOX 3LJYA 2O17A 1IA5A 3BH6B 4YZ0A 1GQ8A 1TSPA 4XM3A 3KRGA 5JLVC 2QY1A 4W8RA 2VBMA 5C1CA 4OJ5A 1PXZA 2X6WA 4XKVA 2BM6A 3N6ZA 1HF2A 1LLZA 2XTYA 2O6WA 2Z8GA 4XORA 3ZSCA 2NTQA 2XTWA 4YDTA 4XLFA 1EE6A 3LMWA 1O8JA 1RWRA 2UVEA 1JTAA 1TYXA 1JRGA 3NB2A 1EZGA 2IQ7A 4OZYA 4XN3A 2PYHA 4XLEA 4YELA 4XOPA 3P4GA 3VMWA 2VBEA 2NTBA 1OFDA 3VSVA 2QX3A 1OGMX 4XKWA 2VFPA 2PECA 3PETA 1IDKA 2QYUA 1HG8A 2BX6A 2XC1A 2O0VA 3SQVA 3WWGA 1RU4A 1TYWA 2G0YA 1CZFA 1O8DA 3ML3A 1OFMA 2EWEA 4OPWA 2O1DA 4YEIA 4XLHA 1QCXA 3DU1X 3N90A 3UW0A 3T9GA 4YCQA 4XQFA 1LLWA 4OJ6A 4XR6A 1QA2A 4YZXA 2NSPA 2J8KA 1DABA 5AMVA 2NZMA 3TH0A 3SY2A 1L1IA 2BM4A 2BM7A 3SZEA 3PSZA 1K5CA 3EQOA 4OM9A 1VBLA 4MR0A 1KCCA 3VSUA 3GQ9A 2BSPA 4OZZA 2INVA 2O0WA 2X3HA 4XONA 4U4BA 3VMVA 1BN8A 1O8MA 1QQ1A 3EQNA 2PYGA 2YUHA 4MXNA 3LYCA 4XNFA 2X6XA 4KH3A 1QRBA 4YEJA 1IB4A 3JX8A 2W7ZA 2B0RA 1RMGA 1LM1A 1O8LA 2XT4A 1PE9A 2O04A 2XTXA 3H09A 1DBGA
chains in the Genus database with same CATH topology
1QJVA 4YZQA 4W8TA 4XN0A 1O8GA 1KCDA 3ZPPA 4NK8A 1OOCA 1IDJA 2NSTA 4W8QA 1DBOA 3B90A 4XOTA 3VSTA 4PMHA 5C1EA 1O8EA 1XG2A 2NTPA 2VBKA 3FY3A 1H80A 4HWVA 4XL9A 3GQ7A 1AIRA 4XMYA 4Z06A 4EW9A 1BHEA 2VJIA 1OFLA 1WMRA 4U49A 2NT9A 1O8KA 3SUCA 2VJJA 3B8YA 1O8IA 1PLUA 2UVFA 3GQAA 4OJOA 1X0CA 4W8SA 1O8HA 4URRA 1O8FA 4NK6A 4OJLA 1O88A 4I84A 3B4NA 4YZAA 2ODLA 2X85A 3JURA 3GRHA 2QXZA 4C2LA 4OJPA 4XLAA 1KTWA 4Z03A 1NHCA 3GQ8A 4Z05A 2NT6A 2X6YA 4AVZA 4XLCA 2INUA 1OGOX 1IA5A 2O17A 4YZ0A 1GQ8A 4XM3A 3KRGA 2QY1A 4W8RA 2VBMA 5C1CA 4OJ5A 1PXZA 2X6WA 4XKVA 4XORA 2Z8GA 3ZSCA 2NTQA 4XLFA 1EE6A 3LMWA 1O8JA 1RWRA 2UVEA 1JTAA 1JRGA 2IQ7A 4OZYA 4XN3A 2PYHA 4XLEA 4YELA 4XOPA 3VMWA 2VBEA 2NTBA 3VSVA 2QX3A 1OGMX 4XKWA 2PECA 1IDKA 3WWGA 1HG8A 2O0VA 1RU4A 1CZFA 1O8DA 1OFMA 2EWEA 2O1DA 4XLHA 1QCXA 3UW0A 3T9GA 4XQFA 4OJ6A 4XR6A 4YZXA 2NSPA 5AMVA 2NZMA 1K5CA 3EQOA 1VBLA 4MR0A 1KCCA 3VSUA 3GQ9A 2BSPA 4OZZA 2INVA 2O0WA 2X3HA 4XONA 4U4BA 3VMVA 1BN8A 1O8MA 3EQNA 2PYGA 4MXNA 4XNFA 2X6XA 4YEJA 1IB4A 1RMGA 1O8LA 1PE9A 2O04A 1DBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QJV A;  4YZQ A;  4W8T A;  4XN0 A;  1O8G A;  1KCD A;  3ZPP A;  4NK8 A;  1OOC A;  1IDJ A;  2NST A;  4W8Q A;  1DBO A;  3B90 A;  4XOT A;  3VST A;  4PMH A;  5C1E A;  1O8E A;  1XG2 A;  2NTP A;  2VBK A;  3FY3 A;  1H80 A;  4HWV A;  4XL9 A;  3GQ7 A;  1AIR A;  4XMY A;  4Z06 A;  4EW9 A;  1BHE A;  2VJI A;  1OFL A;  1WMR A;  4U49 A;  2NT9 A;  1O8K A;  3SUC A;  2VJJ A;  3B8Y A;  1O8I A;  1PLU A;  2UVF A;  3GQA A;  4OJO A;  1X0C A;  4W8S A;  1O8H A;  4URR A;  1O8F A;  4NK6 A;  4OJL A;  1O88 A;  4I84 A;  3B4N A;  4YZA A;  2ODL A;  2X85 A;  3JUR A;  3GRH A;  2QXZ A;  4C2L A;  4OJP A;  4XLA A;  1KTW A;  4Z03 A;  1NHC A;  3GQ8 A;  4Z05 A;  2NT6 A;  2X6Y A;  4AVZ A;  4XLC A;  2INU A;  1OGO X;  1IA5 A;  2O17 A;  4YZ0 A;  1GQ8 A;  4XM3 A;  3KRG A;  2QY1 A;  4W8R A;  2VBM A;  5C1C A;  4OJ5 A;  1PXZ A;  2X6W A;  4XKV A;  4XOR A;  2Z8G A;  3ZSC A;  2NTQ A;  4XLF A;  1EE6 A;  3LMW A;  1O8J A;  1RWR A;  2UVE A;  1JTA A;  1JRG A;  2IQ7 A;  4OZY A;  4XN3 A;  2PYH A;  4XLE A;  4YEL A;  4XOP A;  3VMW A;  2VBE A;  2NTB A;  3VSV A;  2QX3 A;  1OGM X;  4XKW A;  2PEC A;  1IDK A;  3WWG A;  1HG8 A;  2O0V A;  1RU4 A;  1CZF A;  1O8D A;  1OFM A;  2EWE A;  2O1D A;  4XLH A;  1QCX A;  3UW0 A;  3T9G A;  4XQF A;  4OJ6 A;  4XR6 A;  4YZX A;  2NSP A;  5AMV A;  2NZM A;  1K5C A;  3EQO A;  1VBL A;  4MR0 A;  1KCC A;  3VSU A;  3GQ9 A;  2BSP A;  4OZZ A;  2INV A;  2O0W A;  2X3H A;  4XON A;  4U4B A;  3VMV A;  1BN8 A;  1O8M A;  3EQN A;  2PYG A;  4MXN A;  4XNF A;  2X6X A;  4YEJ A;  1IB4 A;  1RMG A;  1O8L A;  1PE9 A;  2O04 A;  1DBG A; 
#chains in the Genus database with same CATH topology
 1QJV A;  4YZQ A;  1K8F A;  1TYU A;  2F3L A;  5JMC B;  2QZA A;  4W8T A;  4XN0 A;  1O8G A;  1KCD A;  3ZPP A;  1TYV A;  2VFN A;  3BH7 B;  4NK8 A;  1EA0 A;  1OOC A;  1IDJ A;  2NST A;  2V5I A;  4W8Q A;  1DBO A;  4YC5 A;  3B90 A;  4XOT A;  2J8I A;  5DNS A;  3VST A;  2VFO A;  4PMH A;  5C1E A;  3RIQ A;  1QA1 A;  1WXR A;  1O8E A;  1XG2 A;  2NTP A;  1QRC A;  2VBK A;  3FY3 A;  3AK5 A;  1H80 A;  4HWV A;  4XL9 A;  3GQ7 A;  1KQ5 A;  1AIR A;  1QA3 A;  4XMY A;  4Z06 A;  4EW9 A;  1BHE A;  2VJI A;  1OFL A;  1WMR A;  2VFM A;  3NAW A;  2NT9 A;  4U49 A;  1O8K A;  3PSS A;  3SUC A;  2VJJ A;  3B8Y A;  1O8I A;  1PLU A;  2UVF A;  3GQA A;  4OJO A;  1X0C A;  4JRA C;  4W8S A;  1O8H A;  4URR A;  1O8F A;  4NK6 A;  4OJL A;  1O88 A;  4I84 A;  4V02 C;  1OFE A;  3B4N A;  4YZA A;  2ODL A;  2X85 A;  2XT2 A;  3JUR A;  2BM5 A;  3GRH A;  2IOU G;  2QXZ A;  4C2L A;  4OJP A;  1CLW A;  2VFQ A;  4YFO A;  4XLA A;  1KTW A;  4Z03 A;  1NHC A;  3GQ8 A;  4Z05 A;  2NT6 A;  2X6Y A;  4AVZ A;  3SYJ A;  4XLC A;  1K4Z A;  2INU A;  1OGO X;  3LJY A;  2O17 A;  1IA5 A;  3BH6 B;  4YZ0 A;  1GQ8 A;  1TSP A;  4XM3 A;  3KRG A;  5JLV C;  2QY1 A;  4W8R A;  2VBM A;  5C1C A;  4OJ5 A;  1PXZ A;  2X6W A;  4XKV A;  2BM6 A;  3N6Z A;  1HF2 A;  1LLZ A;  2XTY A;  2O6W A;  2Z8G A;  4XOR A;  3ZSC A;  2NTQ A;  2XTW A;  4YDT A;  4XLF A;  1EE6 A;  3LMW A;  1O8J A;  1RWR A;  2UVE A;  1JTA A;  1TYX A;  1JRG A;  3NB2 A;  1EZG A;  2IQ7 A;  4OZY A;  4XN3 A;  2PYH A;  4XLE A;  4YEL A;  4XOP A;  3P4G A;  3VMW A;  2VBE A;  2NTB A;  1OFD A;  3VSV A;  2QX3 A;  1OGM X;  4XKW A;  2VFP A;  2PEC A;  3PET A;  1IDK A;  2QYU A;  1HG8 A;  2BX6 A;  2XC1 A;  2O0V A;  3SQV A;  3WWG A;  1RU4 A;  1TYW A;  2G0Y A;  1CZF A;  1O8D A;  3ML3 A;  1OFM A;  2EWE A;  4OPW A;  2O1D A;  4YEI A;  4XLH A;  1QCX A;  3DU1 X;  3N90 A;  3UW0 A;  3T9G A;  4YCQ A;  4XQF A;  1LLW A;  4OJ6 A;  4XR6 A;  1QA2 A;  4YZX A;  2NSP A;  2J8K A;  1DAB A;  5AMV A;  2NZM A;  3TH0 A;  3SY2 A;  1L1I A;  2BM4 A;  2BM7 A;  3SZE A;  3PSZ A;  1K5C A;  3EQO A;  4OM9 A;  1VBL A;  4MR0 A;  1KCC A;  3VSU A;  3GQ9 A;  2BSP A;  4OZZ A;  2INV A;  2O0W A;  2X3H A;  4XON A;  4U4B A;  3VMV A;  1BN8 A;  1O8M A;  1QQ1 A;  3EQN A;  2PYG A;  2YUH A;  4MXN A;  3LYC A;  4XNF A;  2X6X A;  4KH3 A;  1QRB A;  4YEJ A;  1IB4 A;  3JX8 A;  2W7Z A;  2B0R A;  1RMG A;  1LM1 A;  1O8L A;  2XT4 A;  1PE9 A;  2O04 A;  2XTX A;  3H09 A;  1DBG A; 
#chains in the Genus database with same CATH homology
 1QJV A;  4YZQ A;  4W8T A;  4XN0 A;  1O8G A;  1KCD A;  3ZPP A;  4NK8 A;  1OOC A;  1IDJ A;  2NST A;  4W8Q A;  1DBO A;  3B90 A;  4XOT A;  3VST A;  4PMH A;  5C1E A;  1O8E A;  1XG2 A;  2NTP A;  2VBK A;  3FY3 A;  1H80 A;  4HWV A;  4XL9 A;  3GQ7 A;  1AIR A;  4XMY A;  4Z06 A;  4EW9 A;  1BHE A;  2VJI A;  1OFL A;  1WMR A;  4U49 A;  2NT9 A;  1O8K A;  3SUC A;  2VJJ A;  3B8Y A;  1O8I A;  1PLU A;  2UVF A;  3GQA A;  4OJO A;  1X0C A;  4W8S A;  1O8H A;  4URR A;  1O8F A;  4NK6 A;  4OJL A;  1O88 A;  4I84 A;  3B4N A;  4YZA A;  2ODL A;  2X85 A;  3JUR A;  3GRH A;  2QXZ A;  4C2L A;  4OJP A;  4XLA A;  1KTW A;  4Z03 A;  1NHC A;  3GQ8 A;  4Z05 A;  2NT6 A;  2X6Y A;  4AVZ A;  4XLC A;  2INU A;  1OGO X;  1IA5 A;  2O17 A;  4YZ0 A;  1GQ8 A;  4XM3 A;  3KRG A;  2QY1 A;  4W8R A;  2VBM A;  5C1C A;  4OJ5 A;  1PXZ A;  2X6W A;  4XKV A;  4XOR A;  2Z8G A;  3ZSC A;  2NTQ A;  4XLF A;  1EE6 A;  3LMW A;  1O8J A;  1RWR A;  2UVE A;  1JTA A;  1JRG A;  2IQ7 A;  4OZY A;  4XN3 A;  2PYH A;  4XLE A;  4YEL A;  4XOP A;  3VMW A;  2VBE A;  2NTB A;  3VSV A;  2QX3 A;  1OGM X;  4XKW A;  2PEC A;  1IDK A;  3WWG A;  1HG8 A;  2O0V A;  1RU4 A;  1CZF A;  1O8D A;  1OFM A;  2EWE A;  2O1D A;  4XLH A;  1QCX A;  3UW0 A;  3T9G A;  4XQF A;  4OJ6 A;  4XR6 A;  4YZX A;  2NSP A;  5AMV A;  2NZM A;  1K5C A;  3EQO A;  1VBL A;  4MR0 A;  1KCC A;  3VSU A;  3GQ9 A;  2BSP A;  4OZZ A;  2INV A;  2O0W A;  2X3H A;  4XON A;  4U4B A;  3VMV A;  1BN8 A;  1O8M A;  3EQN A;  2PYG A;  4MXN A;  4XNF A;  2X6X A;  4YEJ A;  1IB4 A;  1RMG A;  1O8L A;  1PE9 A;  2O04 A;  1DBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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