1QRBA

Plasticity and steric strain in a parallel beta-helix: rational mutations in p22 tailspike protein
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRFSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords PROTEIN (TAILSPIKE-PROTEIN)
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 187
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrbA00
1QQ1A 2VFQA 1QA2A 1QRBA 1WXRA 3AK5A 3RIQA 1TYUA 2IOUG 3TH0A 1TYWA 2VFOA 2XC1A 2VFMA 3H09A 2VFNA 1TYVA 2V5IA 1QA3A 4KH3A 1TYXA 1QRCA 1CLWA 4OM9A 3SZEA 3ML3A 1QA1A 3SYJA 1TSPA 1DABA 2VFPA
chains in the Genus database with same CATH superfamily
2ODLA 1IDKA 2UVFA 1DBOA 1QA2A 2BM5A 1WXRA 2O04A 4XKVA 3B8YA 1LLWA 4W8SA 3AK5A 4XQFA 3RIQA 2IOUG 4XLCA 1OFMA 1QCXA 4XM3A 1QJVA 1O8GA 2VBMA 3DU1X 2BSPA 1KCCA 4U4BA 2O6WA 3EQNA 4XN3A 3PETA 1L1IA 2NTQA 2IQ7A 2XC1A 2BM7A 2G0YA 1AIRA 2QXZA 2PYGA 2UVEA 3P4GA 1IB4A 1TYVA 2XT4A 4OJLA 4XLFA 3KRGA 3WWGA 1K5CA 3GQ7A 1WMRA 3BH6B 3LMWA 3NB2A 5AMVA 2B0RA 3SZEA 1KCDA 2X6WA 2X6XA 3N90A 1QA1A 2NTPA 4OPWA 4U49A 4MR0A 1EA0A 5C1EA 1PXZA 2VFPA 2NT9A 3BH7B 4OZYA 1QQ1A 2NSPA 4YCQA 1QRBA 4V02C 1K8FA 1LLZA 2XT2A 3B90A 4W8RA 1OGOX 1EZGA 4OZZA 3VMVA 1O8MA 3GQ9A 4Z03A 1JRGA 4EW9A 3TH0A 3LYCA 4YELA 4XL9A 2X85A 2VBEA 3LJYA 2XTYA 3H09A 2Z8GA 4XLHA 3VMWA 4YFOA 4XNFA 4XORA 3VSTA 1EE6A 1X0CA 3T9GA 2QYUA 3FY3A 4XOTA 1CLWA 2INUA 3GRHA 4W8QA 3GQAA 4XMYA 3SY2A 3ML3A 4YZXA 1CZFA 1DBGA 2O0WA 1RU4A 2QZAA 4MXNA 1TSPA 1DABA 3EQOA 2QX3A 2BM4A 3PSZA 4AVZA 3UW0A 1GQ8A 1KQ5A 2VFQA 2XTWA 4C2LA 4OJ5A 2XTXA 4OJPA 1BN8A 1K4ZA 5JLVC 3VSUA 2VJJA 4XN0A 3ZSCA 1OFDA 2BX6A 2VFOA 2X6YA 4XLAA 2VFMA 4YC5A 3ZPPA 3SUCA 3B4NA 1BHEA 2O0VA 4NK8A 5C1CA 3GQ8A 1O8KA 3JX8A 4YEIA 4JRAC 1QRCA 1TYXA 4NK6A 4OM9A 4HWVA 4XR6A 4XONA 4YDTA 2VBKA 1XG2A 1O8EA 3SYJA 1OOCA 3NAWA 4YZ0A 2VJIA 1NHCA 4YZAA 2O17A 2EWEA 1IA5A 1PLUA 4Z06A 5JMCB 1TYUA 3JURA 4XLEA 2NSTA 1H80A 1HG8A 2F3LA 3SQVA 2PYHA 4YZQA 2PECA 2J8KA 4YEJA 1TYWA 2NZMA 2O1DA 1KTWA 3N6ZA 4OJ6A 1OGMX 2INVA 2YUHA 1O8IA 1IDJA 1RMGA 1JTAA 1O88A 2VFNA 1O8FA 3PSSA 1RWRA 4PMHA 5DNSA 2V5IA 1OFEA 2BM6A 1O8JA 2X3HA 4I84A 4Z05A 1QA3A 1O8HA 2W7ZA 4KH3A 4OJOA 1OFLA 1HF2A 1O8DA 4XOPA 4URRA 2J8IA 2NT6A 1VBLA 1PE9A 1LM1A 2NTBA 4XKWA 3VSVA 4W8TA 1O8LA 2QY1A
chains in the Genus database with same CATH topology
1KQ5A 1QQ1A 2VFQA 1QA2A 1QRBA 2BM5A 1K8FA 4OJ5A 4V02C 1WXRA 4OJPA 3AK5A 3RIQA 5JMCB 1TYUA 2IOUG 1K4ZA 5JLVC 2F3LA 3TH0A 3LYCA 1TYWA 2BX6A 2VFOA 3N6ZA 4OJ6A 3PETA 2VFMA 2XC1A 2YUHA 2BM7A 3H09A 3LJYA 2G0YA 2VFNA 3P4GA 1TYVA 2V5IA 2BM6A 4OJLA 1QA3A 3JX8A 4OJOA 2W7ZA 4JRAC 4KH3A 1QRCA 1TYXA 3BH6B 1CLWA 1HF2A 2B0RA 4OM9A 3SZEA 3ML3A 2J8IA 3N90A 1QA1A 4OPWA 3SYJA 1TSPA 1DABA 2BM4A 2VFPA 3BH7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQ1 A;  2VFQ A;  1QA2 A;  1QRB A;  1WXR A;  3AK5 A;  3RIQ A;  1TYU A;  2IOU G;  3TH0 A;  1TYW A;  2VFO A;  2XC1 A;  2VFM A;  3H09 A;  2VFN A;  1TYV A;  2V5I A;  1QA3 A;  4KH3 A;  1TYX A;  1QRC A;  1CLW A;  4OM9 A;  3SZE A;  3ML3 A;  1QA1 A;  3SYJ A;  1TSP A;  1DAB A;  2VFP A; 
#chains in the Genus database with same CATH topology
 2ODL A;  1IDK A;  2UVF A;  1DBO A;  1QA2 A;  2BM5 A;  1WXR A;  2O04 A;  4XKV A;  3B8Y A;  1LLW A;  4W8S A;  3AK5 A;  4XQF A;  3RIQ A;  2IOU G;  4XLC A;  1OFM A;  1QCX A;  4XM3 A;  1QJV A;  1O8G A;  2VBM A;  3DU1 X;  2BSP A;  1KCC A;  4U4B A;  2O6W A;  3EQN A;  4XN3 A;  3PET A;  1L1I A;  2NTQ A;  2IQ7 A;  2XC1 A;  2BM7 A;  2G0Y A;  1AIR A;  2QXZ A;  2PYG A;  2UVE A;  3P4G A;  1IB4 A;  1TYV A;  2XT4 A;  4OJL A;  4XLF A;  3KRG A;  3WWG A;  1K5C A;  3GQ7 A;  1WMR A;  3BH6 B;  3LMW A;  3NB2 A;  5AMV A;  2B0R A;  3SZE A;  1KCD A;  2X6W A;  2X6X A;  3N90 A;  1QA1 A;  2NTP A;  4OPW A;  4U49 A;  4MR0 A;  1EA0 A;  5C1E A;  1PXZ A;  2VFP A;  2NT9 A;  3BH7 B;  4OZY A;  1QQ1 A;  2NSP A;  4YCQ A;  1QRB A;  4V02 C;  1K8F A;  1LLZ A;  2XT2 A;  3B90 A;  4W8R A;  1OGO X;  1EZG A;  4OZZ A;  3VMV A;  1O8M A;  3GQ9 A;  4Z03 A;  1JRG A;  4EW9 A;  3TH0 A;  3LYC A;  4YEL A;  4XL9 A;  2X85 A;  2VBE A;  3LJY A;  2XTY A;  3H09 A;  2Z8G A;  4XLH A;  3VMW A;  4YFO A;  4XNF A;  4XOR A;  3VST A;  1EE6 A;  1X0C A;  3T9G A;  2QYU A;  3FY3 A;  4XOT A;  1CLW A;  2INU A;  3GRH A;  4W8Q A;  3GQA A;  4XMY A;  3SY2 A;  3ML3 A;  4YZX A;  1CZF A;  1DBG A;  2O0W A;  1RU4 A;  2QZA A;  4MXN A;  1TSP A;  1DAB A;  3EQO A;  2QX3 A;  2BM4 A;  3PSZ A;  4AVZ A;  3UW0 A;  1GQ8 A;  1KQ5 A;  2VFQ A;  2XTW A;  4C2L A;  4OJ5 A;  2XTX A;  4OJP A;  1BN8 A;  1K4Z A;  5JLV C;  3VSU A;  2VJJ A;  4XN0 A;  3ZSC A;  1OFD A;  2BX6 A;  2VFO A;  2X6Y A;  4XLA A;  2VFM A;  4YC5 A;  3ZPP A;  3SUC A;  3B4N A;  1BHE A;  2O0V A;  4NK8 A;  5C1C A;  3GQ8 A;  1O8K A;  3JX8 A;  4YEI A;  4JRA C;  1QRC A;  1TYX A;  4NK6 A;  4OM9 A;  4HWV A;  4XR6 A;  4XON A;  4YDT A;  2VBK A;  1XG2 A;  1O8E A;  3SYJ A;  1OOC A;  3NAW A;  4YZ0 A;  2VJI A;  1NHC A;  4YZA A;  2O17 A;  2EWE A;  1IA5 A;  1PLU A;  4Z06 A;  5JMC B;  1TYU A;  3JUR A;  4XLE A;  2NST A;  1H80 A;  1HG8 A;  2F3L A;  3SQV A;  2PYH A;  4YZQ A;  2PEC A;  2J8K A;  4YEJ A;  1TYW A;  2NZM A;  2O1D A;  1KTW A;  3N6Z A;  4OJ6 A;  1OGM X;  2INV A;  2YUH A;  1O8I A;  1IDJ A;  1RMG A;  1JTA A;  1O88 A;  2VFN A;  1O8F A;  3PSS A;  1RWR A;  4PMH A;  5DNS A;  2V5I A;  1OFE A;  2BM6 A;  1O8J A;  2X3H A;  4I84 A;  4Z05 A;  1QA3 A;  1O8H A;  2W7Z A;  4KH3 A;  4OJO A;  1OFL A;  1HF2 A;  1O8D A;  4XOP A;  4URR A;  2J8I A;  2NT6 A;  1VBL A;  1PE9 A;  1LM1 A;  2NTB A;  4XKW A;  3VSV A;  4W8T A;  1O8L A;  2QY1 A; 
#chains in the Genus database with same CATH homology
 1KQ5 A;  1QQ1 A;  2VFQ A;  1QA2 A;  1QRB A;  2BM5 A;  1K8F A;  4OJ5 A;  4V02 C;  1WXR A;  4OJP A;  3AK5 A;  3RIQ A;  5JMC B;  1TYU A;  2IOU G;  1K4Z A;  5JLV C;  2F3L A;  3TH0 A;  3LYC A;  1TYW A;  2BX6 A;  2VFO A;  3N6Z A;  4OJ6 A;  3PET A;  2VFM A;  2XC1 A;  2YUH A;  2BM7 A;  3H09 A;  3LJY A;  2G0Y A;  2VFN A;  3P4G A;  1TYV A;  2V5I A;  2BM6 A;  4OJL A;  1QA3 A;  3JX8 A;  4OJO A;  2W7Z A;  4JRA C;  4KH3 A;  1QRC A;  1TYX A;  3BH6 B;  1CLW A;  1HF2 A;  2B0R A;  4OM9 A;  3SZE A;  3ML3 A;  2J8I A;  3N90 A;  1QA1 A;  4OPW A;  3SYJ A;  1TSP A;  1DAB A;  2BM4 A;  2VFP A;  3BH7 B; 
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similar chains in the Genus database (?% sequence similarity)
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