1QRBA

Plasticity and steric strain in a parallel beta-helix: rational mutations in p22 tailspike protein
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRFSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords PROTEIN (TAILSPIKE-PROTEIN)
total genus 187
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrbA00
1TYXA 1QA3A 2VFMA 2IOUG 2VFPA 1QA2A 3SYJA 3AK5A 1QA1A 1DABA 2VFOA 3RIQA 1WXRA 3TH0A 1TSPA 1TYUA 2V5IA 3H09A 3SZEA 1QRCA 1QRBA 1QQ1A 4KH3A 4OM9A 2VFQA 1TYWA 2XC1A 1CLWA 1TYVA 3ML3A 2VFNA
chains in the Genus database with same CATH superfamily
3LYCA 4XLFA 3FY3A 1RWRA 2BM6A 3B4NA 2X3HA 3BH7B 3EQOA 1GQ8A 3NAWA 4MR0A 3GQ8A 5AMVA 4YZAA 3UW0A 4Z03A 1LLZA 1DBOA 2NSPA 4JRAC 1WXRA 1KCDA 4YZXA 3TH0A 4YZQA 4I84A 1L1IA 2QZAA 4V02C 2X6YA 2F3LA 1HF2A 2EWEA 3NB2A 4OJ5A 4OJPA 2INVA 3H09A 1OGMX 4XLAA 3SZEA 3WWGA 1K5CA 2BM4A 3LJYA 1IDKA 2NSTA 1K4ZA 3GQ9A 4KH3A 1O88A 1O8HA 1O8EA 1CLWA 1OFLA 2NT9A 4YCQA 1EA0A 1AIRA 1QCXA 2VFNA 3JX8A 4OPWA 4YELA 2ODLA 4YDTA 1TYXA 3BH6B 1O8KA 4YC5A 2VFMA 2IOUG 3GQAA 4XKVA 2BM7A 4Z06A 1PXZA 1CZFA 2INUA 2W7ZA 1QA2A 3AK5A 1IDJA 3N6ZA 4OZZA 1OGOX 1QA1A 3JURA 4XL9A 1DBGA 2UVFA 1KTWA 1PE9A 4W8QA 2XT4A 2XTXA 2XTYA 2J8KA 2BM5A 1VBLA 4OZYA 2YUHA 4NK8A 2J8IA 4YEIA 4XONA 2V5IA 1WMRA 4PMHA 3VSTA 4YFOA 1QRBA 5DNSA 2O0VA 3PETA 2VBEA 2VJJA 3B8YA 1O8MA 1O8LA 3VSUA 4W8RA 2X6XA 3ZSCA 4U4BA 1RMGA 5JLVC 2B0RA 2O1DA 4W8TA 1IA5A 1H80A 3PSSA 1O8GA 2VFPA 2G0YA 1QJVA 1KCCA 3SYJA 1OFMA 1X0CA 2VJIA 1XG2A 4XQFA 2XT2A 2BX6A 4U49A 4URRA 4OJLA 2O04A 3GRHA 3B90A 3RIQA 3VMWA 4YEJA 2NT6A 2QXZA 5C1EA 3SY2A 1LLWA 1JTAA 3P4GA 3DU1X 5JMCB 1EZGA 4XOPA 4EW9A 4XN3A 1QQ1A 2QX3A 2VBKA 2VFQA 2XTWA 5C1CA 3GQ7A 2NTBA 2QYUA 3VMVA 1TYVA 3T9GA 1IB4A 2X85A 4AVZA 3ML3A 2PYGA 4XKWA 4C2LA 3LMWA 1O8FA 4XLHA 4XLEA 4XORA 4XMYA 4XNFA 3VSVA 1OFEA 3ZPPA 1QA3A 4XOTA 3SUCA 3N90A 4XLCA 2O0WA 4YZ0A 1OOCA 4NK6A 4XR6A 1EE6A 1K8FA 1JRGA 2O6WA 1DABA 1NHCA 1O8IA 2VFOA 3KRGA 4HWVA 1BN8A 1PLUA 2BSPA 4XN0A 4OJ6A 1KQ5A 2NTQA 1O8DA 1TSPA 1LM1A 2UVEA 4OJOA 1TYUA 1QRCA 2VBMA 1OFDA 4XM3A 2QY1A 3EQNA 4W8SA 4OM9A 2PYHA 1TYWA 2O17A 2PECA 2XC1A 3PSZA 1HG8A 2Z8GA 3SQVA 2NZMA 2X6WA 2NTPA 2IQ7A 4Z05A 1O8JA 1RU4A 4MXNA 1BHEA
chains in the Genus database with same CATH topology
4OPWA 3LYCA 1TYXA 3BH6B 1QA3A 2VFMA 2IOUG 2VFPA 2G0YA 2BM6A 2BM7A 2W7ZA 3N90A 1QA2A 3BH7B 3SYJA 3N6ZA 3AK5A 1QA1A 1K8FA 2BX6A 1DABA 2VFOA 4OJLA 4JRAC 3RIQA 5JLVC 4OJ6A 1WXRA 1KQ5A 3TH0A 1TSPA 2BM5A 4V02C 3JX8A 4OJOA 2F3LA 3P4GA 2YUHA 1HF2A 5JMCB 2J8IA 4OJ5A 1TYUA 2V5IA 3H09A 4OJPA 3SZEA 1QRCA 1QRBA 2BM4A 3LJYA 1QQ1A 1K4ZA 3PETA 4KH3A 2VFQA 1TYWA 4OM9A 2XC1A 1CLWA 1TYVA 3ML3A 2VFNA 2B0RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYX A;  1QA3 A;  2VFM A;  2IOU G;  2VFP A;  1QA2 A;  3SYJ A;  3AK5 A;  1QA1 A;  1DAB A;  2VFO A;  3RIQ A;  1WXR A;  3TH0 A;  1TSP A;  1TYU A;  2V5I A;  3H09 A;  3SZE A;  1QRC A;  1QRB A;  1QQ1 A;  4KH3 A;  4OM9 A;  2VFQ A;  1TYW A;  2XC1 A;  1CLW A;  1TYV A;  3ML3 A;  2VFN A; 
#chains in the Genus database with same CATH topology
 3LYC A;  4XLF A;  3FY3 A;  1RWR A;  2BM6 A;  3B4N A;  2X3H A;  3BH7 B;  3EQO A;  1GQ8 A;  3NAW A;  4MR0 A;  3GQ8 A;  5AMV A;  4YZA A;  3UW0 A;  4Z03 A;  1LLZ A;  1DBO A;  2NSP A;  4JRA C;  1WXR A;  1KCD A;  4YZX A;  3TH0 A;  4YZQ A;  4I84 A;  1L1I A;  2QZA A;  4V02 C;  2X6Y A;  2F3L A;  1HF2 A;  2EWE A;  3NB2 A;  4OJ5 A;  4OJP A;  2INV A;  3H09 A;  1OGM X;  4XLA A;  3SZE A;  3WWG A;  1K5C A;  2BM4 A;  3LJY A;  1IDK A;  2NST A;  1K4Z A;  3GQ9 A;  4KH3 A;  1O88 A;  1O8H A;  1O8E A;  1CLW A;  1OFL A;  2NT9 A;  4YCQ A;  1EA0 A;  1AIR A;  1QCX A;  2VFN A;  3JX8 A;  4OPW A;  4YEL A;  2ODL A;  4YDT A;  1TYX A;  3BH6 B;  1O8K A;  4YC5 A;  2VFM A;  2IOU G;  3GQA A;  4XKV A;  2BM7 A;  4Z06 A;  1PXZ A;  1CZF A;  2INU A;  2W7Z A;  1QA2 A;  3AK5 A;  1IDJ A;  3N6Z A;  4OZZ A;  1OGO X;  1QA1 A;  3JUR A;  4XL9 A;  1DBG A;  2UVF A;  1KTW A;  1PE9 A;  4W8Q A;  2XT4 A;  2XTX A;  2XTY A;  2J8K A;  2BM5 A;  1VBL A;  4OZY A;  2YUH A;  4NK8 A;  2J8I A;  4YEI A;  4XON A;  2V5I A;  1WMR A;  4PMH A;  3VST A;  4YFO A;  1QRB A;  5DNS A;  2O0V A;  3PET A;  2VBE A;  2VJJ A;  3B8Y A;  1O8M A;  1O8L A;  3VSU A;  4W8R A;  2X6X A;  3ZSC A;  4U4B A;  1RMG A;  5JLV C;  2B0R A;  2O1D A;  4W8T A;  1IA5 A;  1H80 A;  3PSS A;  1O8G A;  2VFP A;  2G0Y A;  1QJV A;  1KCC A;  3SYJ A;  1OFM A;  1X0C A;  2VJI A;  1XG2 A;  4XQF A;  2XT2 A;  2BX6 A;  4U49 A;  4URR A;  4OJL A;  2O04 A;  3GRH A;  3B90 A;  3RIQ A;  3VMW A;  4YEJ A;  2NT6 A;  2QXZ A;  5C1E A;  3SY2 A;  1LLW A;  1JTA A;  3P4G A;  3DU1 X;  5JMC B;  1EZG A;  4XOP A;  4EW9 A;  4XN3 A;  1QQ1 A;  2QX3 A;  2VBK A;  2VFQ A;  2XTW A;  5C1C A;  3GQ7 A;  2NTB A;  2QYU A;  3VMV A;  1TYV A;  3T9G A;  1IB4 A;  2X85 A;  4AVZ A;  3ML3 A;  2PYG A;  4XKW A;  4C2L A;  3LMW A;  1O8F A;  4XLH A;  4XLE A;  4XOR A;  4XMY A;  4XNF A;  3VSV A;  1OFE A;  3ZPP A;  1QA3 A;  4XOT A;  3SUC A;  3N90 A;  4XLC A;  2O0W A;  4YZ0 A;  1OOC A;  4NK6 A;  4XR6 A;  1EE6 A;  1K8F A;  1JRG A;  2O6W A;  1DAB A;  1NHC A;  1O8I A;  2VFO A;  3KRG A;  4HWV A;  1BN8 A;  1PLU A;  2BSP A;  4XN0 A;  4OJ6 A;  1KQ5 A;  2NTQ A;  1O8D A;  1TSP A;  1LM1 A;  2UVE A;  4OJO A;  1TYU A;  1QRC A;  2VBM A;  1OFD A;  4XM3 A;  2QY1 A;  3EQN A;  4W8S A;  4OM9 A;  2PYH A;  1TYW A;  2O17 A;  2PEC A;  2XC1 A;  3PSZ A;  1HG8 A;  2Z8G A;  3SQV A;  2NZM A;  2X6W A;  2NTP A;  2IQ7 A;  4Z05 A;  1O8J A;  1RU4 A;  4MXN A;  1BHE A; 
#chains in the Genus database with same CATH homology
 4OPW A;  3LYC A;  1TYX A;  3BH6 B;  1QA3 A;  2VFM A;  2IOU G;  2VFP A;  2G0Y A;  2BM6 A;  2BM7 A;  2W7Z A;  3N90 A;  1QA2 A;  3BH7 B;  3SYJ A;  3N6Z A;  3AK5 A;  1QA1 A;  1K8F A;  2BX6 A;  1DAB A;  2VFO A;  4OJL A;  4JRA C;  3RIQ A;  5JLV C;  4OJ6 A;  1WXR A;  1KQ5 A;  3TH0 A;  1TSP A;  2BM5 A;  4V02 C;  3JX8 A;  4OJO A;  2F3L A;  3P4G A;  2YUH A;  1HF2 A;  5JMC B;  2J8I A;  4OJ5 A;  1TYU A;  2V5I A;  3H09 A;  4OJP A;  3SZE A;  1QRC A;  1QRB A;  2BM4 A;  3LJY A;  1QQ1 A;  1K4Z A;  3PET A;  4KH3 A;  2VFQ A;  1TYW A;  4OM9 A;  2XC1 A;  1CLW A;  1TYV A;  3ML3 A;  2VFN A;  2B0R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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