3N6ZA

Crystal structure of a putative immunoglobulin a1 protease (bacova_03286) from bacteroides ovatus at 1.30 a resolution
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
353
structure length
339
Chain Sequence
DSYTRVPGDGAGGLFEKGNGTDSKPYMIMNATQIRNMRSVLKSGMKVYFQLGADIDMAGIDDWQSLNGSGDFPYEIDFDGDSHVIKNFKCSAGDYPSFFGVLCGDCRNVGFVNASVSSARQGIGIITGYLGLKDKGNGNKTGRIVNCYTTGEVIGSGAAGGIAGVLANSYDGQESYIKNCYSNATVSDRAASGGKAGGIAGRKVGVGGFIENCYAYGAVSATKGGVGGILGQIDKSCDIAIKNSAAWSNLTGVDASSTVGRIVGVSASLGSYENCYACESIVLKVNEKTITASDESSATGTTFHGVAKSAEELGNIIVAWNPNLWKKGTNGYPIFQWSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a putative immunoglobulin A1 protease (BACOVA_03286) from Bacteroides ovatus at 1.30 A resolution
rcsb
molecule tags Hydrolase
source organism Bacteroides ovatus
molecule keywords putative immunoglobulin A1 protease
total genus 132
structure length 339
sequence length 353
ec nomenclature
pdb deposition date 2010-05-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.110 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3n6zA01
3N6ZA
chains in the Genus database with same CATH superfamily
3ZPPA 4YEIA 1IA5A 4EW9A 1O8FA 4XLFA 1OOCA 1EZGA 1JTAA 2NTQA 2PECA 1DABA 1XG2A 4XM3A 4OZYA 1VBLA 2X6WA 4XR6A 1X0CA 1KCCA 4XN3A 3GQ8A 2J8IA 4Z03A 4HWVA 4YZAA 2X85A 2BM5A 4Z06A 2QY1A 4Z05A 1TYWA 1KTWA 4U49A 3PSSA 3GRHA 2NT6A 1EE6A 3VMWA 4XMYA 3B8YA 1O8HA 1O88A 3JX8A 4W8QA 4NK6A 1JRGA 1CLWA 2IQ7A 1QA3A 1DBGA 2BM7A 4XORA 1LM1A 4XLCA 1O8GA 2QYUA 2X6XA 3EQOA 4OJPA 4V02C 4YEJA 4W8SA 3SY2A 3SUCA 4MR0A 1K4ZA 4KH3A 1QJVA 2YUHA 4XN0A 2Z8GA 3VSTA 2J8KA 2NT9A 2O6WA 4XNFA 2VJIA 3B4NA 3N6ZA 1O8MA 2XT4A 4W8RA 2NSTA 2EWEA 1PLUA 1TYVA 2INUA 3B90A 4XLHA 5AMVA 1O8EA 3EQNA 4MXNA 1EA0A 3JURA 1PE9A 2BM4A 2QX3A 3RIQA 2VJJA 2XTWA 2XTYA 1DBOA 3LMWA 1OFMA 1RWRA 4URRA 3TH0A 4OJLA 1WXRA 4OM9A 1TYXA 2O04A 2NZMA 2BM6A 1TSPA 2XTXA 3GQ9A 4U4BA 4XOTA 3ZSCA 2NSPA 2VFMA 2F3LA 1QA2A 1QCXA 4I84A 1CZFA 2VFNA 4XKVA 3T9GA 1O8DA 1O8IA 1QRBA 2BX6A 1GQ8A 4YC5A 2G0YA 4YZQA 3FY3A 1L1IA 3SZEA 1O8JA 3VSVA 1OFDA 1WMRA 3VMVA 4YELA 3H09A 1IB4A 4AVZA 2VFQA 3BH7B 1QQ1A 1IDKA 1K8FA 2O17A 2UVFA 2PYHA 5C1EA 1PXZA 1TYUA 2BSPA 3BH6B 4JRAC 4OJOA 2O0WA 4XLEA 2NTPA 3NB2A 3LJYA 4YZXA 2INVA 5JMCB 2UVEA 1NHCA 2VBMA 4YCQA 2X3HA 1O8LA 4XL9A 1OGMX 5JLVC 3LYCA 1LLWA 2V5IA 1BHEA 3GQAA 3ML3A 4YDTA 1KQ5A 3SYJA 5C1CA 1HF2A 3KRGA 2QXZA 3PSZA 4W8TA 3P4GA 2IOUG 4YFOA 3VSUA 4XONA 1QA1A 4PMHA 1OFLA 4XLAA 2W7ZA 4NK8A 1HG8A 3AK5A 2VFPA 1H80A 2NTBA 4OZZA 1AIRA 1O8KA 5DNSA 2XT2A 3WWGA 2O1DA 4OJ6A 2VBEA 4C2LA 1RU4A 2VBKA 3N90A 1QRCA 3PETA 3UW0A 4OJ5A 3SQVA 4XKWA 2ODLA 2XC1A 1IDJA 2QZAA 2X6YA 4XOPA 4XQFA 1OGOX 2O0VA 1LLZA 3GQ7A 4YZ0A 1OFEA 1K5CA 2VFOA 2B0RA 3NAWA 1KCDA 4OPWA 2PYGA 1RMGA 3DU1X 1BN8A
chains in the Genus database with same CATH topology
2BM6A 1TSPA 4OJPA 4V02C 5JLVC 3LYCA 2V5IA 2VFMA 3SYJA 3ML3A 2F3LA 1KQ5A 1K4ZA 1HF2A 2VFNA 1DABA 2BX6A 1QRBA 2IOUG 3P4GA 4KH3A 2G0YA 1QA1A 2W7ZA 2YUHA 3AK5A 2VFPA 4OJLA 1WXRA 2J8IA 3SZEA 2BM5A 1TYWA 4OJ6A 3N6ZA 3N90A 3PETA 1QRCA 4OM9A 3H09A 4OJ5A 1TYVA 2VFQA 2XC1A 3BH7B 3JX8A 1QQ1A 1K8FA 2BM4A 3RIQA 1CLWA 1TYUA 3BH6B 4JRAC 4OJOA 1QA3A 2BM7A 2VFOA 2B0RA 3TH0A 4OPWA 5JMCB 3LJYA 1TYXA 1QA2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N6Z A; 
#chains in the Genus database with same CATH topology
 3ZPP A;  4YEI A;  1IA5 A;  4EW9 A;  1O8F A;  4XLF A;  1OOC A;  1EZG A;  1JTA A;  2NTQ A;  2PEC A;  1DAB A;  1XG2 A;  4XM3 A;  4OZY A;  1VBL A;  2X6W A;  4XR6 A;  1X0C A;  1KCC A;  4XN3 A;  3GQ8 A;  2J8I A;  4Z03 A;  4HWV A;  4YZA A;  2X85 A;  2BM5 A;  4Z06 A;  2QY1 A;  4Z05 A;  1TYW A;  1KTW A;  4U49 A;  3PSS A;  3GRH A;  2NT6 A;  1EE6 A;  3VMW A;  4XMY A;  3B8Y A;  1O8H A;  1O88 A;  3JX8 A;  4W8Q A;  4NK6 A;  1JRG A;  1CLW A;  2IQ7 A;  1QA3 A;  1DBG A;  2BM7 A;  4XOR A;  1LM1 A;  4XLC A;  1O8G A;  2QYU A;  2X6X A;  3EQO A;  4OJP A;  4V02 C;  4YEJ A;  4W8S A;  3SY2 A;  3SUC A;  4MR0 A;  1K4Z A;  4KH3 A;  1QJV A;  2YUH A;  4XN0 A;  2Z8G A;  3VST A;  2J8K A;  2NT9 A;  2O6W A;  4XNF A;  2VJI A;  3B4N A;  3N6Z A;  1O8M A;  2XT4 A;  4W8R A;  2NST A;  2EWE A;  1PLU A;  1TYV A;  2INU A;  3B90 A;  4XLH A;  5AMV A;  1O8E A;  3EQN A;  4MXN A;  1EA0 A;  3JUR A;  1PE9 A;  2BM4 A;  2QX3 A;  3RIQ A;  2VJJ A;  2XTW A;  2XTY A;  1DBO A;  3LMW A;  1OFM A;  1RWR A;  4URR A;  3TH0 A;  4OJL A;  1WXR A;  4OM9 A;  1TYX A;  2O04 A;  2NZM A;  2BM6 A;  1TSP A;  2XTX A;  3GQ9 A;  4U4B A;  4XOT A;  3ZSC A;  2NSP A;  2VFM A;  2F3L A;  1QA2 A;  1QCX A;  4I84 A;  1CZF A;  2VFN A;  4XKV A;  3T9G A;  1O8D A;  1O8I A;  1QRB A;  2BX6 A;  1GQ8 A;  4YC5 A;  2G0Y A;  4YZQ A;  3FY3 A;  1L1I A;  3SZE A;  1O8J A;  3VSV A;  1OFD A;  1WMR A;  3VMV A;  4YEL A;  3H09 A;  1IB4 A;  4AVZ A;  2VFQ A;  3BH7 B;  1QQ1 A;  1IDK A;  1K8F A;  2O17 A;  2UVF A;  2PYH A;  5C1E A;  1PXZ A;  1TYU A;  2BSP A;  3BH6 B;  4JRA C;  4OJO A;  2O0W A;  4XLE A;  2NTP A;  3NB2 A;  3LJY A;  4YZX A;  2INV A;  5JMC B;  2UVE A;  1NHC A;  2VBM A;  4YCQ A;  2X3H A;  1O8L A;  4XL9 A;  1OGM X;  5JLV C;  3LYC A;  1LLW A;  2V5I A;  1BHE A;  3GQA A;  3ML3 A;  4YDT A;  1KQ5 A;  3SYJ A;  5C1C A;  1HF2 A;  3KRG A;  2QXZ A;  3PSZ A;  4W8T A;  3P4G A;  2IOU G;  4YFO A;  3VSU A;  4XON A;  1QA1 A;  4PMH A;  1OFL A;  4XLA A;  2W7Z A;  4NK8 A;  1HG8 A;  3AK5 A;  2VFP A;  1H80 A;  2NTB A;  4OZZ A;  1AIR A;  1O8K A;  5DNS A;  2XT2 A;  3WWG A;  2O1D A;  4OJ6 A;  2VBE A;  4C2L A;  1RU4 A;  2VBK A;  3N90 A;  1QRC A;  3PET A;  3UW0 A;  4OJ5 A;  3SQV A;  4XKW A;  2ODL A;  2XC1 A;  1IDJ A;  2QZA A;  2X6Y A;  4XOP A;  4XQF A;  1OGO X;  2O0V A;  1LLZ A;  3GQ7 A;  4YZ0 A;  1OFE A;  1K5C A;  2VFO A;  2B0R A;  3NAW A;  1KCD A;  4OPW A;  2PYG A;  1RMG A;  3DU1 X;  1BN8 A; 
#chains in the Genus database with same CATH homology
 2BM6 A;  1TSP A;  4OJP A;  4V02 C;  5JLV C;  3LYC A;  2V5I A;  2VFM A;  3SYJ A;  3ML3 A;  2F3L A;  1KQ5 A;  1K4Z A;  1HF2 A;  2VFN A;  1DAB A;  2BX6 A;  1QRB A;  2IOU G;  3P4G A;  4KH3 A;  2G0Y A;  1QA1 A;  2W7Z A;  2YUH A;  3AK5 A;  2VFP A;  4OJL A;  1WXR A;  2J8I A;  3SZE A;  2BM5 A;  1TYW A;  4OJ6 A;  3N6Z A;  3N90 A;  3PET A;  1QRC A;  4OM9 A;  3H09 A;  4OJ5 A;  1TYV A;  2VFQ A;  2XC1 A;  3BH7 B;  3JX8 A;  1QQ1 A;  1K8F A;  2BM4 A;  3RIQ A;  1CLW A;  1TYU A;  3BH6 B;  4JRA C;  4OJO A;  1QA3 A;  2BM7 A;  2VFO A;  2B0R A;  3TH0 A;  4OPW A;  5JMC B;  3LJY A;  1TYX A;  1QA2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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