2XTXA

Structure of qnrb1 (m102r-trypsin treated), a plasmid-mediated fluoroquinolone resistance protein
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
216
structure length
207
Chain Sequence
GSHMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFRCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGIAVI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
source organism Klebsiella pneumoniae
publication title Structure of Qnrb1, a Plasmid-Mediated Fluoroquinolone Resistance Factor.
pubmed doi rcsb
molecule keywords QNRB1
total genus 83
structure length 207
sequence length 216
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2xtxA00
3PSSA 3DU1X 2XTXA 4YC5A 2QZAA 2XTWA 3NB2A 2J8KA 3PSZA 2XTYA 3SY2A 2QYUA 4YDTA 2XT2A 4YCQA 3SQVA 2XT4A 4YEIA 4YFOA 3NAWA 2O6WA 5DNSA
chains in the Genus database with same CATH superfamily
1QJVA 4OZZA 3PETA 4XL9A 4YC5A 1O8EA 1OFLA 2G0YA 4NK8A 2NTPA 2QZAA 2X85A 1QA3A 2XTWA 3NB2A 1AIRA 1LLWA 3GQ7A 2J8KA 1H80A 1EZGA 2VJJA 2VBMA 3ML3A 3B4NA 3KRGA 1EE6A 4W8RA 3VMWA 1IB4A 2IOUG 2VJIA 1O8GA 4OZYA 4XOTA 3LMWA 1WMRA 3FY3A 4XOPA 4V02C 1JRGA 2NSPA 5C1EA 4XN3A 1L1IA 2ODLA 4XKWA 1O8IA 4XNFA 3B8YA 4JRAC 2BM4A 1PE9A 3T9GA 4Z05A 3VSUA 4XM3A 4YEIA 2QY1A 1IDKA 1KTWA 2PECA 3BH6B 3NAWA 1HF2A 3ZSCA 2O6WA 3UW0A 2VFOA 1IDJA 2VFQA 4HWVA 3JURA 1DABA 1NHCA 3PSSA 4NK6A 3AK5A 5C1CA 2O0VA 1RU4A 2XTXA 1CLWA 4MXNA 2X6XA 3VSVA 3P4GA 4OJ5A 4YZQA 5AMVA 4URRA 4I84A 2BSPA 4XORA 3SZEA 2X3HA 4OJOA 4XKVA 2BM6A 3TH0A 3WWGA 1KCCA 3JX8A 4XLAA 1BN8A 2UVFA 1PXZA 1OFMA 3EQOA 1KCDA 2XTYA 3SYJA 3SY2A 1TSPA 2YUHA 4U49A 1QRCA 1XG2A 2F3LA 1TYUA 2X6WA 4XLHA 4YZXA 2NT9A 3RIQA 1DBOA 1O8MA 4W8TA 2UVEA 2XT2A 4XLFA 1OFDA 3LYCA 3H09A 4MR0A 1K8FA 5JLVC 1QA1A 4AVZA 1TYWA 2BX6A 4XR6A 1OOCA 1GQ8A 4YEJA 3BH7B 2PYGA 2BM7A 3DU1X 3GQ8A 3N6ZA 1K4ZA 2B0RA 4Z06A 4XQFA 4C2LA 1EA0A 1JTAA 3VMVA 4U4BA 2VFMA 1O8FA 1RWRA 2PYHA 2O1DA 1LLZA 2O17A 4KH3A 2QX3A 4XN0A 2W7ZA 2O04A 1O8JA 1IA5A 2V5IA 5DNSA 1O88A 3B90A 4YDTA 1O8KA 4YZAA 2VFNA 2X6YA 4OJLA 1OFEA 4YCQA 1QCXA 4XMYA 3EQNA 4OM9A 3GRHA 1O8LA 4YZ0A 4YFOA 1DBGA 1QRBA 1CZFA 1K5CA 4W8QA 2XC1A 3ZPPA 1O8DA 3GQAA 1BHEA 2EWEA 4W8SA 2NZMA 2VBEA 1QA2A 4Z03A 2BM5A 4PMHA 2J8IA 1LM1A 1RMGA 1VBLA 1HG8A 1X0CA 2NTQA 2O0WA 2INVA 4XLCA 3PSZA 2Z8GA 1O8HA 4YELA 1TYVA 4OPWA 4OJPA 2INUA 4OJ6A 2IQ7A 4XLEA 2NT6A 2NSTA 2VBKA 3VSTA 2NTBA 3SUCA 2QYUA 4XONA 1PLUA 1KQ5A 1WXRA 1TYXA 3SQVA 5JMCB 2XT4A 3GQ9A 2QXZA 3N90A 2VFPA 1OGMX 3LJYA 1OGOX 4EW9A 1QQ1A
chains in the Genus database with same CATH topology
3PSSA 3DU1X 2XTXA 4YC5A 2QZAA 2XTWA 3NB2A 2J8KA 3PSZA 2XTYA 3SY2A 2QYUA 4YDTA 2XT2A 4YCQA 3SQVA 2XT4A 4YEIA 4YFOA 3NAWA 2O6WA 5DNSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PSS A;  3DU1 X;  2XTX A;  4YC5 A;  2QZA A;  2XTW A;  3NB2 A;  2J8K A;  3PSZ A;  2XTY A;  3SY2 A;  2QYU A;  4YDT A;  2XT2 A;  4YCQ A;  3SQV A;  2XT4 A;  4YEI A;  4YFO A;  3NAW A;  2O6W A;  5DNS A; 
#chains in the Genus database with same CATH topology
 1QJV A;  4OZZ A;  3PET A;  4XL9 A;  4YC5 A;  1O8E A;  1OFL A;  2G0Y A;  4NK8 A;  2NTP A;  2QZA A;  2X85 A;  1QA3 A;  2XTW A;  3NB2 A;  1AIR A;  1LLW A;  3GQ7 A;  2J8K A;  1H80 A;  1EZG A;  2VJJ A;  2VBM A;  3ML3 A;  3B4N A;  3KRG A;  1EE6 A;  4W8R A;  3VMW A;  1IB4 A;  2IOU G;  2VJI A;  1O8G A;  4OZY A;  4XOT A;  3LMW A;  1WMR A;  3FY3 A;  4XOP A;  4V02 C;  1JRG A;  2NSP A;  5C1E A;  4XN3 A;  1L1I A;  2ODL A;  4XKW A;  1O8I A;  4XNF A;  3B8Y A;  4JRA C;  2BM4 A;  1PE9 A;  3T9G A;  4Z05 A;  3VSU A;  4XM3 A;  4YEI A;  2QY1 A;  1IDK A;  1KTW A;  2PEC A;  3BH6 B;  3NAW A;  1HF2 A;  3ZSC A;  2O6W A;  3UW0 A;  2VFO A;  1IDJ A;  2VFQ A;  4HWV A;  3JUR A;  1DAB A;  1NHC A;  3PSS A;  4NK6 A;  3AK5 A;  5C1C A;  2O0V A;  1RU4 A;  2XTX A;  1CLW A;  4MXN A;  2X6X A;  3VSV A;  3P4G A;  4OJ5 A;  4YZQ A;  5AMV A;  4URR A;  4I84 A;  2BSP A;  4XOR A;  3SZE A;  2X3H A;  4OJO A;  4XKV A;  2BM6 A;  3TH0 A;  3WWG A;  1KCC A;  3JX8 A;  4XLA A;  1BN8 A;  2UVF A;  1PXZ A;  1OFM A;  3EQO A;  1KCD A;  2XTY A;  3SYJ A;  3SY2 A;  1TSP A;  2YUH A;  4U49 A;  1QRC A;  1XG2 A;  2F3L A;  1TYU A;  2X6W A;  4XLH A;  4YZX A;  2NT9 A;  3RIQ A;  1DBO A;  1O8M A;  4W8T A;  2UVE A;  2XT2 A;  4XLF A;  1OFD A;  3LYC A;  3H09 A;  4MR0 A;  1K8F A;  5JLV C;  1QA1 A;  4AVZ A;  1TYW A;  2BX6 A;  4XR6 A;  1OOC A;  1GQ8 A;  4YEJ A;  3BH7 B;  2PYG A;  2BM7 A;  3DU1 X;  3GQ8 A;  3N6Z A;  1K4Z A;  2B0R A;  4Z06 A;  4XQF A;  4C2L A;  1EA0 A;  1JTA A;  3VMV A;  4U4B A;  2VFM A;  1O8F A;  1RWR A;  2PYH A;  2O1D A;  1LLZ A;  2O17 A;  4KH3 A;  2QX3 A;  4XN0 A;  2W7Z A;  2O04 A;  1O8J A;  1IA5 A;  2V5I A;  5DNS A;  1O88 A;  3B90 A;  4YDT A;  1O8K A;  4YZA A;  2VFN A;  2X6Y A;  4OJL A;  1OFE A;  4YCQ A;  1QCX A;  4XMY A;  3EQN A;  4OM9 A;  3GRH A;  1O8L A;  4YZ0 A;  4YFO A;  1DBG A;  1QRB A;  1CZF A;  1K5C A;  4W8Q A;  2XC1 A;  3ZPP A;  1O8D A;  3GQA A;  1BHE A;  2EWE A;  4W8S A;  2NZM A;  2VBE A;  1QA2 A;  4Z03 A;  2BM5 A;  4PMH A;  2J8I A;  1LM1 A;  1RMG A;  1VBL A;  1HG8 A;  1X0C A;  2NTQ A;  2O0W A;  2INV A;  4XLC A;  3PSZ A;  2Z8G A;  1O8H A;  4YEL A;  1TYV A;  4OPW A;  4OJP A;  2INU A;  4OJ6 A;  2IQ7 A;  4XLE A;  2NT6 A;  2NST A;  2VBK A;  3VST A;  2NTB A;  3SUC A;  2QYU A;  4XON A;  1PLU A;  1KQ5 A;  1WXR A;  1TYX A;  3SQV A;  5JMC B;  2XT4 A;  3GQ9 A;  2QXZ A;  3N90 A;  2VFP A;  1OGM X;  3LJY A;  1OGO X;  4EW9 A;  1QQ1 A; 
#chains in the Genus database with same CATH homology
 3PSS A;  3DU1 X;  2XTX A;  4YC5 A;  2QZA A;  2XTW A;  3NB2 A;  2J8K A;  3PSZ A;  2XTY A;  3SY2 A;  2QYU A;  4YDT A;  2XT2 A;  4YCQ A;  3SQV A;  2XT4 A;  4YEI A;  4YFO A;  3NAW A;  2O6W A;  5DNS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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