3WWGA

Crystal structure of the n-glycan-deficient variant n448a of isopullulanase complexed with isopanose
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
547
structure length
536
Chain Sequence
FMAVTANNSQLLTWWHNTGEINTQTPVADGNVRQSGLYSVKVQTTPASLYYDSFVYLAIPGNGMSDQLQYTQGYNQTQAWTSFLYSHDATVKISRNGSNVVIRPTSLNFPVRYDNQSVYITVPYSPTGYRFSVEFDDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMYPGTILQDVFYHTDDDGLKMYYSNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQAYANAGNNPGIFGAVNNYLYASAHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQITVTDFSIEGFTVGNTTITASNAASVGRIDGVDPAYAGSVHYID
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Isopullulanase
publication title The side chain of a glycosylated asparagine residue is important for the stability of isopullulanase
pubmed doi rcsb
source organism Aspergillus niger
total genus 184
structure length 536
sequence length 547
chains with identical sequence B, C, D
ec nomenclature ec 3.2.1.57: Isopullulanase.
pdb deposition date 2014-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
A PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
A PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 3wwgA01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3wwgA02
3GQAA 3T9GA 4OZZA 2X6XA 1K5CA 1IB4A 4YZXA 1KCCA 1BHEA 4XR6A 4HWVA 4YZQA 1RMGA 5AMVA 4XQFA 1BN8A 4XMYA 4Z05A 1IA5A 3VSTA 2VBMA 3EQNA 4YZ0A 4XL9A 4OJLA 4U49A 1O8DA 3EQOA 2QXZA 3ZSCA 1IDJA 4XKWA 1JRGA 1O8LA 1NHCA 2VBEA 4Z03A 4XOPA 2PECA 4NK8A 5C1EA 4XONA 2ODLA 2UVEA 2VJIA 4OZYA 1PE9A 3GQ9A 2X6YA 4W8TA 2X3HA 3ZPPA 3GRHA 1O88A 3GQ7A 4YZAA 4W8SA 4OJPA 1O8MA 2NT9A 2O1DA 2PYHA 1JTAA 4NK6A 2X6WA 2EWEA 3VMVA 4YEJA 2QY1A 1X0CA 4C2LA 1DBOA 1OGOX 2UVFA 3B4NA 4I84A 1O8IA 4PMHA 4EW9A 1O8FA 4XM3A 4MXNA 2IQ7A 3B8YA 2VJJA 1PXZA 3B90A 2PYGA 1XG2A 1QCXA 2NTBA 4U4BA 2NTQA 1O8JA 3JURA 3UW0A 2NT6A 1O8HA 2O17A 4OJOA 4XLHA 1O8GA 3VSUA 1CZFA 1O8KA 2INUA 4MR0A 2BSPA 1WMRA 1OOCA 4XOTA 2VBKA 1HG8A 4XORA 2NZMA 2INVA 1H80A 1DBGA 1OFMA 4XN0A 4AVZA 4XNFA 2NTPA 1QJVA 1PLUA 1AIRA 1GQ8A 4XLFA 3VMWA 4W8QA 1VBLA 4XN3A 4URRA 3SUCA 3GQ8A 2Z8GA 4W8RA 1OGMX 4XLEA 4OJ6A 4XLCA 1KTWA 4YELA 1KCDA 2QX3A 4XKVA 2NSTA 2O04A 5C1CA 3KRGA 3LMWA 2X85A 4Z06A 2NSPA 3FY3A 1O8EA 1IDKA 1EE6A 3VSVA 4XLAA 2O0VA 2O0WA 1RU4A 3WWGA 4OJ5A 1RWRA 1OFLA
chains in the Genus database with same CATH superfamily
2VFPA 3GQAA 3T9GA 4OZZA 1QRCA 2XTWA 3SZEA 2X6XA 1WXRA 4YC5A 1K5CA 2VFMA 1IB4A 2YUHA 4YZXA 1KCCA 3N90A 3SQVA 1BHEA 4XR6A 4HWVA 4YZQA 1RMGA 5AMVA 4XQFA 3ML3A 1BN8A 4XMYA 4Z05A 1IA5A 3VSTA 2VBMA 3EQNA 3BH7B 2XTXA 4YZ0A 4KH3A 3TH0A 2F3LA 4YFOA 4XL9A 2W7ZA 4JRAC 1O8DA 1TSPA 3EQOA 2VFNA 4OJLA 4U49A 2QXZA 3ZSCA 1IDJA 4OJ5A 2BX6A 1JRGA 4XKWA 1O8LA 1NHCA 2VBEA 2XC1A 4Z03A 4XOPA 2PECA 2QZAA 4NK8A 5C1EA 1TYVA 4XONA 2ODLA 2UVEA 2VJIA 1QQ1A 1PE9A 3GQ9A 2X6YA 4OZYA 1CLWA 4W8TA 3PSSA 2X3HA 3ZPPA 1EZGA 2XTYA 3GRHA 1O88A 3GQ7A 4YZAA 4W8SA 4OJPA 1O8MA 5DNSA 2NT9A 2O1DA 2PYHA 1JTAA 4NK6A 2X6WA 2EWEA 3VMVA 4YEIA 4YEJA 3SYJA 2QY1A 1QA2A 1X0CA 3DU1X 4C2LA 1DBOA 1OGOX 2UVFA 3B4NA 4I84A 1O8IA 4PMHA 4YDTA 4EW9A 2V5IA 1O8FA 4XM3A 5JMCB 4MXNA 2IQ7A 3B8YA 2VJJA 2IOUG 1PXZA 2J8IA 3B90A 1L1IA 2B0RA 2BM6A 2PYGA 3LYCA 1XG2A 1QCXA 2NTBA 4OM9A 2NTQA 1O8JA 3JURA 4U4BA 3UW0A 1QA1A 2NT6A 1EA0A 1O8HA 2O17A 4OJOA 4XLHA 3P4GA 1O8GA 2XT2A 1CZFA 1KQ5A 1O8KA 3VSUA 2INUA 1HF2A 4MR0A 1QA3A 2BSPA 1K8FA 1WMRA 1OOCA 3NAWA 4XOTA 2VBKA 1HG8A 4OPWA 4XORA 2NZMA 2BM7A 2G0YA 2INVA 2VFOA 1H80A 1OFDA 1DBGA 1LLWA 1OFMA 4XN0A 4AVZA 4XNFA 2NTPA 1QJVA 3LJYA 4YCQA 1PLUA 1AIRA 3RIQA 1GQ8A 4XLFA 3VMWA 4W8QA 1VBLA 2BM4A 4XN3A 4URRA 3SUCA 3GQ8A 3PETA 2VFQA 1TYWA 2Z8GA 4W8RA 1OGMX 1LLZA 3H09A 3JX8A 4XLEA 4OJ6A 4XLCA 2O6WA 3SY2A 1KTWA 4YELA 1KCDA 4V02C 2QX3A 4XKVA 1OFEA 2NSTA 2O04A 2QYUA 3N6ZA 3AK5A 5C1CA 3KRGA 3LMWA 3PSZA 2X85A 4Z06A 2NSPA 3FY3A 3NB2A 1O8EA 1IDKA 2BM5A 1EE6A 2XT4A 3VSVA 4XLAA 1TYXA 2O0VA 3BH6B 2O0WA 1RU4A 5JLVC 2J8KA 1DABA 3WWGA 1LM1A 1K4ZA 1QRBA 1TYUA 1RWRA 1OFLA
chains in the Genus database with same CATH topology
3GQAA 3T9GA 4OZZA 2X6XA 1K5CA 1IB4A 4YZXA 1KCCA 1BHEA 4XR6A 4HWVA 4YZQA 1RMGA 5AMVA 4XQFA 1BN8A 4XMYA 4Z05A 1IA5A 3VSTA 2VBMA 3EQNA 4YZ0A 4XL9A 4OJLA 4U49A 1O8DA 3EQOA 2QXZA 3ZSCA 1IDJA 4XKWA 1JRGA 1O8LA 1NHCA 2VBEA 4Z03A 4XOPA 2PECA 4NK8A 5C1EA 4XONA 2ODLA 2UVEA 2VJIA 4OZYA 1PE9A 3GQ9A 2X6YA 4W8TA 2X3HA 3ZPPA 3GRHA 1O88A 3GQ7A 4YZAA 4W8SA 4OJPA 1O8MA 2NT9A 2O1DA 2PYHA 1JTAA 4NK6A 2X6WA 2EWEA 3VMVA 4YEJA 2QY1A 1X0CA 4C2LA 1DBOA 1OGOX 2UVFA 3B4NA 4I84A 1O8IA 4PMHA 4EW9A 1O8FA 4XM3A 4MXNA 2IQ7A 3B8YA 2VJJA 1PXZA 3B90A 2PYGA 1XG2A 1QCXA 2NTBA 4U4BA 2NTQA 1O8JA 3JURA 3UW0A 2NT6A 1O8HA 2O17A 4OJOA 4XLHA 1O8GA 3VSUA 1CZFA 1O8KA 2INUA 4MR0A 2BSPA 1WMRA 1OOCA 4XOTA 2VBKA 1HG8A 4XORA 2NZMA 2INVA 1H80A 1DBGA 1OFMA 4XN0A 4AVZA 4XNFA 2NTPA 1QJVA 1PLUA 1AIRA 1GQ8A 4XLFA 3VMWA 4W8QA 1VBLA 4XN3A 4URRA 3SUCA 3GQ8A 2Z8GA 4W8RA 1OGMX 4XLEA 4OJ6A 4XLCA 1KTWA 4YELA 1KCDA 2QX3A 4XKVA 2NSTA 2O04A 5C1CA 3KRGA 3LMWA 2X85A 4Z06A 2NSPA 3FY3A 1O8EA 1IDKA 1EE6A 3VSVA 4XLAA 2O0VA 2O0WA 1RU4A 3WWGA 4OJ5A 1RWRA 1OFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GQA A;  3T9G A;  4OZZ A;  2X6X A;  1K5C A;  1IB4 A;  4YZX A;  1KCC A;  1BHE A;  4XR6 A;  4HWV A;  4YZQ A;  1RMG A;  5AMV A;  4XQF A;  1BN8 A;  4XMY A;  4Z05 A;  1IA5 A;  3VST A;  2VBM A;  3EQN A;  4YZ0 A;  4XL9 A;  4OJL A;  4U49 A;  1O8D A;  3EQO A;  2QXZ A;  3ZSC A;  1IDJ A;  4XKW A;  1JRG A;  1O8L A;  1NHC A;  2VBE A;  4Z03 A;  4XOP A;  2PEC A;  4NK8 A;  5C1E A;  4XON A;  2ODL A;  2UVE A;  2VJI A;  4OZY A;  1PE9 A;  3GQ9 A;  2X6Y A;  4W8T A;  2X3H A;  3ZPP A;  3GRH A;  1O88 A;  3GQ7 A;  4YZA A;  4W8S A;  4OJP A;  1O8M A;  2NT9 A;  2O1D A;  2PYH A;  1JTA A;  4NK6 A;  2X6W A;  2EWE A;  3VMV A;  4YEJ A;  2QY1 A;  1X0C A;  4C2L A;  1DBO A;  1OGO X;  2UVF A;  3B4N A;  4I84 A;  1O8I A;  4PMH A;  4EW9 A;  1O8F A;  4XM3 A;  4MXN A;  2IQ7 A;  3B8Y A;  2VJJ A;  1PXZ A;  3B90 A;  2PYG A;  1XG2 A;  1QCX A;  2NTB A;  4U4B A;  2NTQ A;  1O8J A;  3JUR A;  3UW0 A;  2NT6 A;  1O8H A;  2O17 A;  4OJO A;  4XLH A;  1O8G A;  3VSU A;  1CZF A;  1O8K A;  2INU A;  4MR0 A;  2BSP A;  1WMR A;  1OOC A;  4XOT A;  2VBK A;  1HG8 A;  4XOR A;  2NZM A;  2INV A;  1H80 A;  1DBG A;  1OFM A;  4XN0 A;  4AVZ A;  4XNF A;  2NTP A;  1QJV A;  1PLU A;  1AIR A;  1GQ8 A;  4XLF A;  3VMW A;  4W8Q A;  1VBL A;  4XN3 A;  4URR A;  3SUC A;  3GQ8 A;  2Z8G A;  4W8R A;  1OGM X;  4XLE A;  4OJ6 A;  4XLC A;  1KTW A;  4YEL A;  1KCD A;  2QX3 A;  4XKV A;  2NST A;  2O04 A;  5C1C A;  3KRG A;  3LMW A;  2X85 A;  4Z06 A;  2NSP A;  3FY3 A;  1O8E A;  1IDK A;  1EE6 A;  3VSV A;  4XLA A;  2O0V A;  2O0W A;  1RU4 A;  3WWG A;  4OJ5 A;  1RWR A;  1OFL A; 
#chains in the Genus database with same CATH topology
 2VFP A;  3GQA A;  3T9G A;  4OZZ A;  1QRC A;  2XTW A;  3SZE A;  2X6X A;  1WXR A;  4YC5 A;  1K5C A;  2VFM A;  1IB4 A;  2YUH A;  4YZX A;  1KCC A;  3N90 A;  3SQV A;  1BHE A;  4XR6 A;  4HWV A;  4YZQ A;  1RMG A;  5AMV A;  4XQF A;  3ML3 A;  1BN8 A;  4XMY A;  4Z05 A;  1IA5 A;  3VST A;  2VBM A;  3EQN A;  3BH7 B;  2XTX A;  4YZ0 A;  4KH3 A;  3TH0 A;  2F3L A;  4YFO A;  4XL9 A;  2W7Z A;  4JRA C;  1O8D A;  1TSP A;  3EQO A;  2VFN A;  4OJL A;  4U49 A;  2QXZ A;  3ZSC A;  1IDJ A;  4OJ5 A;  2BX6 A;  1JRG A;  4XKW A;  1O8L A;  1NHC A;  2VBE A;  2XC1 A;  4Z03 A;  4XOP A;  2PEC A;  2QZA A;  4NK8 A;  5C1E A;  1TYV A;  4XON A;  2ODL A;  2UVE A;  2VJI A;  1QQ1 A;  1PE9 A;  3GQ9 A;  2X6Y A;  4OZY A;  1CLW A;  4W8T A;  3PSS A;  2X3H A;  3ZPP A;  1EZG A;  2XTY A;  3GRH A;  1O88 A;  3GQ7 A;  4YZA A;  4W8S A;  4OJP A;  1O8M A;  5DNS A;  2NT9 A;  2O1D A;  2PYH A;  1JTA A;  4NK6 A;  2X6W A;  2EWE A;  3VMV A;  4YEI A;  4YEJ A;  3SYJ A;  2QY1 A;  1QA2 A;  1X0C A;  3DU1 X;  4C2L A;  1DBO A;  1OGO X;  2UVF A;  3B4N A;  4I84 A;  1O8I A;  4PMH A;  4YDT A;  4EW9 A;  2V5I A;  1O8F A;  4XM3 A;  5JMC B;  4MXN A;  2IQ7 A;  3B8Y A;  2VJJ A;  2IOU G;  1PXZ A;  2J8I A;  3B90 A;  1L1I A;  2B0R A;  2BM6 A;  2PYG A;  3LYC A;  1XG2 A;  1QCX A;  2NTB A;  4OM9 A;  2NTQ A;  1O8J A;  3JUR A;  4U4B A;  3UW0 A;  1QA1 A;  2NT6 A;  1EA0 A;  1O8H A;  2O17 A;  4OJO A;  4XLH A;  3P4G A;  1O8G A;  2XT2 A;  1CZF A;  1KQ5 A;  1O8K A;  3VSU A;  2INU A;  1HF2 A;  4MR0 A;  1QA3 A;  2BSP A;  1K8F A;  1WMR A;  1OOC A;  3NAW A;  4XOT A;  2VBK A;  1HG8 A;  4OPW A;  4XOR A;  2NZM A;  2BM7 A;  2G0Y A;  2INV A;  2VFO A;  1H80 A;  1OFD A;  1DBG A;  1LLW A;  1OFM A;  4XN0 A;  4AVZ A;  4XNF A;  2NTP A;  1QJV A;  3LJY A;  4YCQ A;  1PLU A;  1AIR A;  3RIQ A;  1GQ8 A;  4XLF A;  3VMW A;  4W8Q A;  1VBL A;  2BM4 A;  4XN3 A;  4URR A;  3SUC A;  3GQ8 A;  3PET A;  2VFQ A;  1TYW A;  2Z8G A;  4W8R A;  1OGM X;  1LLZ A;  3H09 A;  3JX8 A;  4XLE A;  4OJ6 A;  4XLC A;  2O6W A;  3SY2 A;  1KTW A;  4YEL A;  1KCD A;  4V02 C;  2QX3 A;  4XKV A;  1OFE A;  2NST A;  2O04 A;  2QYU A;  3N6Z A;  3AK5 A;  5C1C A;  3KRG A;  3LMW A;  3PSZ A;  2X85 A;  4Z06 A;  2NSP A;  3FY3 A;  3NB2 A;  1O8E A;  1IDK A;  2BM5 A;  1EE6 A;  2XT4 A;  3VSV A;  4XLA A;  1TYX A;  2O0V A;  3BH6 B;  2O0W A;  1RU4 A;  5JLV C;  2J8K A;  1DAB A;  3WWG A;  1LM1 A;  1K4Z A;  1QRB A;  1TYU A;  1RWR A;  1OFL A; 
#chains in the Genus database with same CATH homology
 3GQA A;  3T9G A;  4OZZ A;  2X6X A;  1K5C A;  1IB4 A;  4YZX A;  1KCC A;  1BHE A;  4XR6 A;  4HWV A;  4YZQ A;  1RMG A;  5AMV A;  4XQF A;  1BN8 A;  4XMY A;  4Z05 A;  1IA5 A;  3VST A;  2VBM A;  3EQN A;  4YZ0 A;  4XL9 A;  4OJL A;  4U49 A;  1O8D A;  3EQO A;  2QXZ A;  3ZSC A;  1IDJ A;  4XKW A;  1JRG A;  1O8L A;  1NHC A;  2VBE A;  4Z03 A;  4XOP A;  2PEC A;  4NK8 A;  5C1E A;  4XON A;  2ODL A;  2UVE A;  2VJI A;  4OZY A;  1PE9 A;  3GQ9 A;  2X6Y A;  4W8T A;  2X3H A;  3ZPP A;  3GRH A;  1O88 A;  3GQ7 A;  4YZA A;  4W8S A;  4OJP A;  1O8M A;  2NT9 A;  2O1D A;  2PYH A;  1JTA A;  4NK6 A;  2X6W A;  2EWE A;  3VMV A;  4YEJ A;  2QY1 A;  1X0C A;  4C2L A;  1DBO A;  1OGO X;  2UVF A;  3B4N A;  4I84 A;  1O8I A;  4PMH A;  4EW9 A;  1O8F A;  4XM3 A;  4MXN A;  2IQ7 A;  3B8Y A;  2VJJ A;  1PXZ A;  3B90 A;  2PYG A;  1XG2 A;  1QCX A;  2NTB A;  4U4B A;  2NTQ A;  1O8J A;  3JUR A;  3UW0 A;  2NT6 A;  1O8H A;  2O17 A;  4OJO A;  4XLH A;  1O8G A;  3VSU A;  1CZF A;  1O8K A;  2INU A;  4MR0 A;  2BSP A;  1WMR A;  1OOC A;  4XOT A;  2VBK A;  1HG8 A;  4XOR A;  2NZM A;  2INV A;  1H80 A;  1DBG A;  1OFM A;  4XN0 A;  4AVZ A;  4XNF A;  2NTP A;  1QJV A;  1PLU A;  1AIR A;  1GQ8 A;  4XLF A;  3VMW A;  4W8Q A;  1VBL A;  4XN3 A;  4URR A;  3SUC A;  3GQ8 A;  2Z8G A;  4W8R A;  1OGM X;  4XLE A;  4OJ6 A;  4XLC A;  1KTW A;  4YEL A;  1KCD A;  2QX3 A;  4XKV A;  2NST A;  2O04 A;  5C1C A;  3KRG A;  3LMW A;  2X85 A;  4Z06 A;  2NSP A;  3FY3 A;  1O8E A;  1IDK A;  1EE6 A;  3VSV A;  4XLA A;  2O0V A;  2O0W A;  1RU4 A;  3WWG A;  4OJ5 A;  1RWR A;  1OFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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