3JURA

The crystal structure of a hyperthermoactive exopolygalacturonase from thermotoga maritima
Total Genus 192
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
444
structure length
444
Chain Sequence
ELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEGVFLTGPIHLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEKLYIEGKALLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer
pubmed doi rcsb
molecule tags Hydrolase
source organism Thermotoga maritima
molecule keywords Exo-poly-alpha-D-galacturonosidase
total genus 192
structure length 444
sequence length 444
chains with identical sequence B, C, D
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2009-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3jurA00
4Z03A 4OJOA 2NTPA 1DBOA 3GQ9A 2O1DA 2NT6A 2O0VA 4C2LA 4XN3A 4XONA 2VBEA 3JURA 3LMWA 4PMHA 1NHCA 1OFLA 1CZFA 1IDJA 4XLFA 1EE6A 4XMYA 3VMWA 2X6YA 1KTWA 2INUA 2PYHA 2VJIA 1BN8A 1KCDA 1VBLA 3VMVA 1PXZA 4YZQA 5C1CA 2UVEA 1AIRA 3T9GA 3FY3A 1O8IA 2NTQA 1O8LA 3GRHA 1DBGA 4U49A 1XG2A 4Z06A 1RWRA 1PLUA 1IA5A 1O8JA 2O0WA 2X85A 3ZSCA 4XM3A 1O8FA 2IQ7A 4W8TA 4XKWA 4OJ6A 4NK6A 1O88A 4AVZA 2VBMA 4OZYA 2QY1A 3EQNA 4I84A 4W8SA 1O8KA 4XLAA 3SUCA 3B4NA 2INVA 4XL9A 4NK8A 2X6WA 2PYGA 4YZAA 1H80A 1OFMA 1OGOX 4XLEA 5C1EA 2O17A 1HG8A 1IDKA 2EWEA 2ODLA 1X0CA 4EW9A 2NSPA 1GQ8A 1IB4A 4URRA 3EQOA 4YELA 2BSPA 4MXNA 1QJVA 1OOCA 2QXZA 4XOPA 4U4BA 2NSTA 4OJPA 4MR0A 3GQ7A 3UW0A 4XORA 4XNFA 4W8QA 1O8GA 4XKVA 3WWGA 1JRGA 2VBKA 4OJLA 3ZPPA 3VSUA 2PECA 1O8DA 4HWVA 1QCXA 1WMRA 4OZZA 3GQ8A 4OJ5A 4XQFA 2QX3A 4YZ0A 4XLCA 2UVFA 3KRGA 4YZXA 4XLHA 1RU4A 2NTBA 4YEJA 3B8YA 3GQAA 1O8MA 1RMGA 2VJJA 4XR6A 4XOTA 3VSVA 2NZMA 2NT9A 2O04A 4Z05A 5AMVA 1OGMX 2X6XA 2X3HA 2Z8GA 1PE9A 1JTAA 1BHEA 1O8HA 1K5CA 3VSTA 4W8RA 3B90A 1KCCA 4XN0A 1O8EA
chains in the Genus database with same CATH superfamily
4Z03A 4OJOA 2NTPA 1DBOA 3GQ9A 2O1DA 2NT6A 2O0VA 2VFPA 4C2LA 4XN3A 4XONA 2VBEA 3JURA 3LMWA 3SQVA 4PMHA 1NHCA 1OFLA 1CZFA 1QQ1A 1L1IA 1IDJA 4XLFA 1EE6A 4XMYA 3VMWA 2B0RA 2X6YA 1KTWA 1QA3A 2INUA 2PYHA 2VJIA 1K4ZA 1LLWA 3N90A 1QRCA 1BN8A 1KCDA 1VBLA 3VMVA 1TYUA 1EA0A 4V02C 3SZEA 1PXZA 4OM9A 4YZQA 5C1CA 3TH0A 2UVEA 1AIRA 5JMCB 2XTWA 4YFOA 3T9GA 3FY3A 1O8IA 4YEIA 2NTQA 1O8LA 3DU1X 1KQ5A 3GRHA 4YCQA 2O6WA 3PETA 4YC5A 2XT2A 4KH3A 1HF2A 1DBGA 2YUHA 4U49A 1XG2A 4Z06A 1RWRA 2BM5A 2XC1A 2W7ZA 1PLUA 1IA5A 1O8JA 3SY2A 2O0WA 5DNSA 2X85A 3ZSCA 4XM3A 1O8FA 3H09A 2IQ7A 1TYXA 3P4GA 4W8TA 4XKWA 3AK5A 3BH7B 3ML3A 4OJ6A 1OFDA 4NK6A 1O88A 4AVZA 2VBMA 4OZYA 3JX8A 2QY1A 1QA2A 3EQNA 4I84A 4W8SA 2G0YA 3RIQA 1O8KA 4XLAA 3SUCA 3B4NA 2INVA 2VFNA 3LJYA 4XL9A 4NK8A 2X6WA 2PYGA 2BX6A 4YZAA 2QZAA 1H80A 1OFMA 1OGOX 2XT4A 4XLEA 5C1EA 2O17A 1HG8A 4YDTA 2V5IA 1IDKA 2EWEA 2ODLA 1X0CA 2XTYA 3PSZA 1CLWA 2NSPA 4EW9A 2VFQA 1GQ8A 1IB4A 3LYCA 4URRA 3EQOA 4YELA 3PSSA 2BSPA 2BM4A 4MXNA 3BH6B 1QJVA 1OOCA 2QXZA 4XOPA 4JRAC 4U4BA 1WXRA 5JLVC 2NSTA 4OJPA 4MR0A 2IOUG 3GQ7A 3UW0A 4XORA 4XNFA 4W8QA 1K8FA 1O8GA 3N6ZA 4XKVA 3SYJA 3WWGA 1JRGA 2VBKA 4OJLA 3ZPPA 3VSUA 2PECA 2VFMA 1O8DA 1LLZA 3NB2A 4HWVA 1QCXA 1WMRA 4OZZA 3GQ8A 2J8IA 4OJ5A 4XQFA 1QA1A 1EZGA 2QX3A 4YZ0A 4XLCA 2UVFA 3KRGA 1LM1A 1TSPA 4YZXA 1TYVA 1OFEA 4XLHA 1RU4A 2NTBA 1QRBA 4YEJA 2QYUA 2BM7A 3B8YA 3GQAA 1O8MA 1RMGA 2VJJA 4XR6A 4XOTA 3VSVA 2NZMA 2BM6A 2NT9A 2O04A 4Z05A 1OGMX 5AMVA 2VFOA 2X6XA 2X3HA 2Z8GA 1PE9A 1JTAA 4OPWA 1BHEA 1O8HA 1K5CA 2XTXA 3VSTA 3NAWA 2F3LA 4W8RA 2J8KA 3B90A 1KCCA 4XN0A 1DABA 1O8EA 1TYWA
chains in the Genus database with same CATH topology
4Z03A 4OJOA 2NTPA 1DBOA 3GQ9A 2O1DA 2NT6A 2O0VA 4C2LA 4XN3A 4XONA 2VBEA 3JURA 3LMWA 4PMHA 1NHCA 1OFLA 1CZFA 1IDJA 4XLFA 1EE6A 4XMYA 3VMWA 2X6YA 1KTWA 2INUA 2PYHA 2VJIA 1BN8A 1KCDA 1VBLA 3VMVA 1PXZA 4YZQA 5C1CA 2UVEA 1AIRA 3T9GA 3FY3A 1O8IA 2NTQA 1O8LA 3GRHA 1DBGA 4U49A 1XG2A 4Z06A 1RWRA 1PLUA 1IA5A 1O8JA 2O0WA 2X85A 3ZSCA 4XM3A 1O8FA 2IQ7A 4W8TA 4XKWA 4OJ6A 4NK6A 1O88A 4AVZA 2VBMA 4OZYA 2QY1A 3EQNA 4I84A 4W8SA 1O8KA 4XLAA 3SUCA 3B4NA 2INVA 4XL9A 4NK8A 2X6WA 2PYGA 4YZAA 1H80A 1OFMA 1OGOX 4XLEA 5C1EA 2O17A 1HG8A 1IDKA 2EWEA 2ODLA 1X0CA 4EW9A 2NSPA 1GQ8A 1IB4A 4URRA 3EQOA 4YELA 2BSPA 4MXNA 1QJVA 1OOCA 2QXZA 4XOPA 4U4BA 2NSTA 4OJPA 4MR0A 3GQ7A 3UW0A 4XORA 4XNFA 4W8QA 1O8GA 4XKVA 3WWGA 1JRGA 2VBKA 4OJLA 3ZPPA 3VSUA 2PECA 1O8DA 4HWVA 1QCXA 1WMRA 4OZZA 3GQ8A 4OJ5A 4XQFA 2QX3A 4YZ0A 4XLCA 2UVFA 3KRGA 4YZXA 4XLHA 1RU4A 2NTBA 4YEJA 3B8YA 3GQAA 1O8MA 1RMGA 2VJJA 4XR6A 4XOTA 3VSVA 2NZMA 2NT9A 2O04A 4Z05A 5AMVA 1OGMX 2X6XA 2X3HA 2Z8GA 1PE9A 1JTAA 1BHEA 1O8HA 1K5CA 3VSTA 4W8RA 3B90A 1KCCA 4XN0A 1O8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z03 A;  4OJO A;  2NTP A;  1DBO A;  3GQ9 A;  2O1D A;  2NT6 A;  2O0V A;  4C2L A;  4XN3 A;  4XON A;  2VBE A;  3JUR A;  3LMW A;  4PMH A;  1NHC A;  1OFL A;  1CZF A;  1IDJ A;  4XLF A;  1EE6 A;  4XMY A;  3VMW A;  2X6Y A;  1KTW A;  2INU A;  2PYH A;  2VJI A;  1BN8 A;  1KCD A;  1VBL A;  3VMV A;  1PXZ A;  4YZQ A;  5C1C A;  2UVE A;  1AIR A;  3T9G A;  3FY3 A;  1O8I A;  2NTQ A;  1O8L A;  3GRH A;  1DBG A;  4U49 A;  1XG2 A;  4Z06 A;  1RWR A;  1PLU A;  1IA5 A;  1O8J A;  2O0W A;  2X85 A;  3ZSC A;  4XM3 A;  1O8F A;  2IQ7 A;  4W8T A;  4XKW A;  4OJ6 A;  4NK6 A;  1O88 A;  4AVZ A;  2VBM A;  4OZY A;  2QY1 A;  3EQN A;  4I84 A;  4W8S A;  1O8K A;  4XLA A;  3SUC A;  3B4N A;  2INV A;  4XL9 A;  4NK8 A;  2X6W A;  2PYG A;  4YZA A;  1H80 A;  1OFM A;  1OGO X;  4XLE A;  5C1E A;  2O17 A;  1HG8 A;  1IDK A;  2EWE A;  2ODL A;  1X0C A;  4EW9 A;  2NSP A;  1GQ8 A;  1IB4 A;  4URR A;  3EQO A;  4YEL A;  2BSP A;  4MXN A;  1QJV A;  1OOC A;  2QXZ A;  4XOP A;  4U4B A;  2NST A;  4OJP A;  4MR0 A;  3GQ7 A;  3UW0 A;  4XOR A;  4XNF A;  4W8Q A;  1O8G A;  4XKV A;  3WWG A;  1JRG A;  2VBK A;  4OJL A;  3ZPP A;  3VSU A;  2PEC A;  1O8D A;  4HWV A;  1QCX A;  1WMR A;  4OZZ A;  3GQ8 A;  4OJ5 A;  4XQF A;  2QX3 A;  4YZ0 A;  4XLC A;  2UVF A;  3KRG A;  4YZX A;  4XLH A;  1RU4 A;  2NTB A;  4YEJ A;  3B8Y A;  3GQA A;  1O8M A;  1RMG A;  2VJJ A;  4XR6 A;  4XOT A;  3VSV A;  2NZM A;  2NT9 A;  2O04 A;  4Z05 A;  5AMV A;  1OGM X;  2X6X A;  2X3H A;  2Z8G A;  1PE9 A;  1JTA A;  1BHE A;  1O8H A;  1K5C A;  3VST A;  4W8R A;  3B90 A;  1KCC A;  4XN0 A;  1O8E A; 
#chains in the Genus database with same CATH topology
 4Z03 A;  4OJO A;  2NTP A;  1DBO A;  3GQ9 A;  2O1D A;  2NT6 A;  2O0V A;  2VFP A;  4C2L A;  4XN3 A;  4XON A;  2VBE A;  3JUR A;  3LMW A;  3SQV A;  4PMH A;  1NHC A;  1OFL A;  1CZF A;  1QQ1 A;  1L1I A;  1IDJ A;  4XLF A;  1EE6 A;  4XMY A;  3VMW A;  2B0R A;  2X6Y A;  1KTW A;  1QA3 A;  2INU A;  2PYH A;  2VJI A;  1K4Z A;  1LLW A;  3N90 A;  1QRC A;  1BN8 A;  1KCD A;  1VBL A;  3VMV A;  1TYU A;  1EA0 A;  4V02 C;  3SZE A;  1PXZ A;  4OM9 A;  4YZQ A;  5C1C A;  3TH0 A;  2UVE A;  1AIR A;  5JMC B;  2XTW A;  4YFO A;  3T9G A;  3FY3 A;  1O8I A;  4YEI A;  2NTQ A;  1O8L A;  3DU1 X;  1KQ5 A;  3GRH A;  4YCQ A;  2O6W A;  3PET A;  4YC5 A;  2XT2 A;  4KH3 A;  1HF2 A;  1DBG A;  2YUH A;  4U49 A;  1XG2 A;  4Z06 A;  1RWR A;  2BM5 A;  2XC1 A;  2W7Z A;  1PLU A;  1IA5 A;  1O8J A;  3SY2 A;  2O0W A;  5DNS A;  2X85 A;  3ZSC A;  4XM3 A;  1O8F A;  3H09 A;  2IQ7 A;  1TYX A;  3P4G A;  4W8T A;  4XKW A;  3AK5 A;  3BH7 B;  3ML3 A;  4OJ6 A;  1OFD A;  4NK6 A;  1O88 A;  4AVZ A;  2VBM A;  4OZY A;  3JX8 A;  2QY1 A;  1QA2 A;  3EQN A;  4I84 A;  4W8S A;  2G0Y A;  3RIQ A;  1O8K A;  4XLA A;  3SUC A;  3B4N A;  2INV A;  2VFN A;  3LJY A;  4XL9 A;  4NK8 A;  2X6W A;  2PYG A;  2BX6 A;  4YZA A;  2QZA A;  1H80 A;  1OFM A;  1OGO X;  2XT4 A;  4XLE A;  5C1E A;  2O17 A;  1HG8 A;  4YDT A;  2V5I A;  1IDK A;  2EWE A;  2ODL A;  1X0C A;  2XTY A;  3PSZ A;  1CLW A;  2NSP A;  4EW9 A;  2VFQ A;  1GQ8 A;  1IB4 A;  3LYC A;  4URR A;  3EQO A;  4YEL A;  3PSS A;  2BSP A;  2BM4 A;  4MXN A;  3BH6 B;  1QJV A;  1OOC A;  2QXZ A;  4XOP A;  4JRA C;  4U4B A;  1WXR A;  5JLV C;  2NST A;  4OJP A;  4MR0 A;  2IOU G;  3GQ7 A;  3UW0 A;  4XOR A;  4XNF A;  4W8Q A;  1K8F A;  1O8G A;  3N6Z A;  4XKV A;  3SYJ A;  3WWG A;  1JRG A;  2VBK A;  4OJL A;  3ZPP A;  3VSU A;  2PEC A;  2VFM A;  1O8D A;  1LLZ A;  3NB2 A;  4HWV A;  1QCX A;  1WMR A;  4OZZ A;  3GQ8 A;  2J8I A;  4OJ5 A;  4XQF A;  1QA1 A;  1EZG A;  2QX3 A;  4YZ0 A;  4XLC A;  2UVF A;  3KRG A;  1LM1 A;  1TSP A;  4YZX A;  1TYV A;  1OFE A;  4XLH A;  1RU4 A;  2NTB A;  1QRB A;  4YEJ A;  2QYU A;  2BM7 A;  3B8Y A;  3GQA A;  1O8M A;  1RMG A;  2VJJ A;  4XR6 A;  4XOT A;  3VSV A;  2NZM A;  2BM6 A;  2NT9 A;  2O04 A;  4Z05 A;  1OGM X;  5AMV A;  2VFO A;  2X6X A;  2X3H A;  2Z8G A;  1PE9 A;  1JTA A;  4OPW A;  1BHE A;  1O8H A;  1K5C A;  2XTX A;  3VST A;  3NAW A;  2F3L A;  4W8R A;  2J8K A;  3B90 A;  1KCC A;  4XN0 A;  1DAB A;  1O8E A;  1TYW A; 
#chains in the Genus database with same CATH homology
 4Z03 A;  4OJO A;  2NTP A;  1DBO A;  3GQ9 A;  2O1D A;  2NT6 A;  2O0V A;  4C2L A;  4XN3 A;  4XON A;  2VBE A;  3JUR A;  3LMW A;  4PMH A;  1NHC A;  1OFL A;  1CZF A;  1IDJ A;  4XLF A;  1EE6 A;  4XMY A;  3VMW A;  2X6Y A;  1KTW A;  2INU A;  2PYH A;  2VJI A;  1BN8 A;  1KCD A;  1VBL A;  3VMV A;  1PXZ A;  4YZQ A;  5C1C A;  2UVE A;  1AIR A;  3T9G A;  3FY3 A;  1O8I A;  2NTQ A;  1O8L A;  3GRH A;  1DBG A;  4U49 A;  1XG2 A;  4Z06 A;  1RWR A;  1PLU A;  1IA5 A;  1O8J A;  2O0W A;  2X85 A;  3ZSC A;  4XM3 A;  1O8F A;  2IQ7 A;  4W8T A;  4XKW A;  4OJ6 A;  4NK6 A;  1O88 A;  4AVZ A;  2VBM A;  4OZY A;  2QY1 A;  3EQN A;  4I84 A;  4W8S A;  1O8K A;  4XLA A;  3SUC A;  3B4N A;  2INV A;  4XL9 A;  4NK8 A;  2X6W A;  2PYG A;  4YZA A;  1H80 A;  1OFM A;  1OGO X;  4XLE A;  5C1E A;  2O17 A;  1HG8 A;  1IDK A;  2EWE A;  2ODL A;  1X0C A;  4EW9 A;  2NSP A;  1GQ8 A;  1IB4 A;  4URR A;  3EQO A;  4YEL A;  2BSP A;  4MXN A;  1QJV A;  1OOC A;  2QXZ A;  4XOP A;  4U4B A;  2NST A;  4OJP A;  4MR0 A;  3GQ7 A;  3UW0 A;  4XOR A;  4XNF A;  4W8Q A;  1O8G A;  4XKV A;  3WWG A;  1JRG A;  2VBK A;  4OJL A;  3ZPP A;  3VSU A;  2PEC A;  1O8D A;  4HWV A;  1QCX A;  1WMR A;  4OZZ A;  3GQ8 A;  4OJ5 A;  4XQF A;  2QX3 A;  4YZ0 A;  4XLC A;  2UVF A;  3KRG A;  4YZX A;  4XLH A;  1RU4 A;  2NTB A;  4YEJ A;  3B8Y A;  3GQA A;  1O8M A;  1RMG A;  2VJJ A;  4XR6 A;  4XOT A;  3VSV A;  2NZM A;  2NT9 A;  2O04 A;  4Z05 A;  5AMV A;  1OGM X;  2X6X A;  2X3H A;  2Z8G A;  1PE9 A;  1JTA A;  1BHE A;  1O8H A;  1K5C A;  3VST A;  4W8R A;  3B90 A;  1KCC A;  4XN0 A;  1O8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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