3JURA

The crystal structure of a hyperthermoactive exopolygalacturonase from thermotoga maritima
Total Genus 192
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
444
structure length
444
Chain Sequence
ELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEGVFLTGPIHLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEKLYIEGKALLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Exo-poly-alpha-D-galacturonosidase
publication title The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer
pubmed doi rcsb
source organism Thermotoga maritima
total genus 192
structure length 444
sequence length 444
chains with identical sequence B, C, D
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2009-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3jurA00
1GQ8A 3KRGA 4NK8A 5AMVA 3GQ9A 4OZYA 4XOPA 1OOCA 2QXZA 2X6WA 2X85A 3B8YA 4YZ0A 4XORA 3VSVA 1O8LA 2VBKA 4U4BA 3VSUA 2VJIA 3GQ7A 4OZZA 1O8GA 4HWVA 1DBOA 2UVFA 1JTAA 2IQ7A 2NTBA 3VMWA 1O88A 1QCXA 3T9GA 2O17A 1OGMX 1KTWA 2O1DA 1DBGA 4OJLA 4XLAA 1O8KA 4XMYA 2INUA 4YEJA 2INVA 4Z06A 1WMRA 1PE9A 3GQAA 2X3HA 1O8JA 4Z05A 4AVZA 5C1CA 1EE6A 1VBLA 1X0CA 3ZSCA 2VJJA 4XNFA 3EQOA 4XONA 2NSPA 2VBMA 1PXZA 2O0VA 1QJVA 4XN3A 1O8DA 2NTQA 2NSTA 2PYHA 4OJ6A 3B90A 1BN8A 3FY3A 4W8RA 3B4NA 1O8IA 4YZXA 3GQ8A 5C1EA 2NT6A 4PMHA 4W8TA 3VMVA 2NTPA 1XG2A 1IDKA 1O8FA 4XQFA 4W8SA 4XM3A 1IA5A 2NZMA 4MR0A 1KCDA 4OJPA 2X6YA 3WWGA 4XLFA 3LMWA 4XLCA 4OJ5A 2PECA 1PLUA 2QY1A 2EWEA 2NT9A 1BHEA 4W8QA 1NHCA 4XR6A 4EW9A 1OGOX 4OJOA 1IB4A 1JRGA 4XKVA 1HG8A 4XKWA 2O04A 1CZFA 3EQNA 4YZQA 1O8MA 2QX3A 3ZPPA 3GRHA 4MXNA 3SUCA 3JURA 4Z03A 2BSPA 1OFLA 4I84A 2X6XA 4XLEA 1O8HA 1KCCA 4NK6A 1RMGA 2UVEA 2O0WA 1RWRA 4YELA 1IDJA 1K5CA 4URRA 1RU4A 4XN0A 2PYGA 2VBEA 2ODLA 3VSTA 1AIRA 1O8EA 4XLHA 4XOTA 4XL9A 4YZAA 3UW0A 1H80A 4U49A 2Z8GA 4C2LA 1OFMA
chains in the Genus database with same CATH superfamily
1GQ8A 3KRGA 4NK8A 5AMVA 3GQ9A 4OZYA 4XOPA 1OOCA 2QXZA 2J8KA 1LM1A 2X6WA 2X85A 3B8YA 4YZ0A 2XTXA 5DNSA 4XORA 3VSVA 1O8LA 2VBKA 4U4BA 3VSUA 1QQ1A 3BH6B 1EA0A 2VJIA 3AK5A 3GQ7A 1DABA 4OZZA 1O8GA 4HWVA 1DBOA 2UVFA 2IOUG 1JTAA 2QZAA 2XTWA 3PSZA 2IQ7A 2NTBA 3NB2A 3VMWA 1O88A 2VFNA 2YUHA 1QCXA 3DU1X 3T9GA 2O17A 1OGMX 1TYWA 1KTWA 2O1DA 1DBGA 4OJLA 4XLAA 1O8KA 2BM6A 3N6ZA 4XMYA 4YFOA 2INUA 3TH0A 4YEJA 2INVA 4Z06A 1WMRA 3ML3A 1PE9A 1TYXA 1QA2A 3GQAA 2X3HA 1O8JA 2XC1A 4OPWA 4Z05A 4AVZA 1L1IA 5C1CA 1EE6A 1LLZA 1VBLA 1X0CA 3ZSCA 2VJJA 1TSPA 3EQOA 2VFQA 4XONA 2NSPA 2VBMA 1PXZA 2O0VA 4XNFA 3RIQA 1KQ5A 1QJVA 4XN3A 1O8DA 2NTQA 2XT2A 2NSTA 1QA3A 2PYHA 4OJ6A 1CLWA 2VFOA 3B90A 1BN8A 2XT4A 3N90A 3FY3A 4W8RA 2BM5A 3B4NA 1O8IA 1TYUA 4YZXA 3GQ8A 5C1EA 2NT6A 4PMHA 4W8TA 3SY2A 2V5IA 2NTPA 1XG2A 1IDKA 1O8FA 3SYJA 3VMVA 4XQFA 4W8SA 1QRCA 3H09A 4XM3A 1K8FA 3JX8A 3P4GA 1IA5A 2NZMA 1QA1A 3NAWA 4MR0A 4YDTA 5JMCB 1KCDA 4OJPA 2X6YA 3WWGA 2BX6A 4XLFA 2XTYA 3LMWA 3PSSA 4XLCA 4OJ5A 2PECA 1HF2A 1PLUA 2QY1A 2EWEA 2NT9A 1BHEA 2G0YA 2QYUA 4W8QA 1NHCA 4XR6A 4EW9A 1OGOX 4OJOA 2F3LA 1IB4A 1JRGA 4XKVA 1HG8A 4XKWA 2O04A 3SZEA 1CZFA 5JLVC 2VFPA 3EQNA 1OFEA 2VFMA 3BH7B 4YZQA 1O8MA 2J8IA 2QX3A 1EZGA 3ZPPA 3GRHA 4MXNA 1QRBA 3LYCA 3SUCA 3JURA 4YC5A 3PETA 2BSPA 4Z03A 4OM9A 1OFLA 4I84A 2X6XA 2W7ZA 4XLEA 1O8HA 1KCCA 4NK6A 1K4ZA 1RMGA 2BM4A 2O0WA 2UVEA 1RWRA 4YEIA 1OFDA 4YELA 1IDJA 1K5CA 1LLWA 1RU4A 4URRA 4XN0A 2PYGA 2VBEA 2O6WA 4V02C 2ODLA 1TYVA 3VSTA 1AIRA 4JRAC 1O8EA 4XLHA 1WXRA 2B0RA 4KH3A 4XOTA 3LJYA 4XL9A 4YZAA 3UW0A 1H80A 3SQVA 4U49A 2BM7A 4YCQA 2Z8GA 4C2LA 1OFMA
chains in the Genus database with same CATH topology
1GQ8A 3KRGA 4NK8A 5AMVA 3GQ9A 4OZYA 4XOPA 1OOCA 2QXZA 2X6WA 2X85A 3B8YA 4YZ0A 4XORA 3VSVA 1O8LA 2VBKA 4U4BA 3VSUA 2VJIA 3GQ7A 4OZZA 1O8GA 4HWVA 1DBOA 2UVFA 1JTAA 2IQ7A 2NTBA 3VMWA 1O88A 1QCXA 3T9GA 2O17A 1OGMX 1KTWA 2O1DA 1DBGA 4OJLA 4XLAA 1O8KA 4XMYA 2INUA 4YEJA 2INVA 4Z06A 1WMRA 1PE9A 3GQAA 2X3HA 1O8JA 4Z05A 4AVZA 5C1CA 1EE6A 1VBLA 1X0CA 3ZSCA 2VJJA 4XNFA 3EQOA 4XONA 2NSPA 2VBMA 1PXZA 2O0VA 1QJVA 4XN3A 1O8DA 2NTQA 2NSTA 2PYHA 4OJ6A 3B90A 1BN8A 3FY3A 4W8RA 3B4NA 1O8IA 4YZXA 3GQ8A 5C1EA 2NT6A 4PMHA 4W8TA 3VMVA 2NTPA 1XG2A 1IDKA 1O8FA 4XQFA 4W8SA 4XM3A 1IA5A 2NZMA 4MR0A 1KCDA 4OJPA 2X6YA 3WWGA 4XLFA 3LMWA 4XLCA 4OJ5A 2PECA 1PLUA 2QY1A 2EWEA 2NT9A 1BHEA 4W8QA 1NHCA 4XR6A 4EW9A 1OGOX 4OJOA 1IB4A 1JRGA 4XKVA 1HG8A 4XKWA 2O04A 1CZFA 3EQNA 4YZQA 1O8MA 2QX3A 3ZPPA 3GRHA 4MXNA 3SUCA 3JURA 4Z03A 2BSPA 1OFLA 4I84A 2X6XA 4XLEA 1O8HA 1KCCA 4NK6A 1RMGA 2UVEA 2O0WA 1RWRA 4YELA 1IDJA 1K5CA 4URRA 1RU4A 4XN0A 2PYGA 2VBEA 2ODLA 3VSTA 1AIRA 1O8EA 4XLHA 4XOTA 4XL9A 4YZAA 3UW0A 1H80A 4U49A 2Z8GA 4C2LA 1OFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GQ8 A;  3KRG A;  4NK8 A;  5AMV A;  3GQ9 A;  4OZY A;  4XOP A;  1OOC A;  2QXZ A;  2X6W A;  2X85 A;  3B8Y A;  4YZ0 A;  4XOR A;  3VSV A;  1O8L A;  2VBK A;  4U4B A;  3VSU A;  2VJI A;  3GQ7 A;  4OZZ A;  1O8G A;  4HWV A;  1DBO A;  2UVF A;  1JTA A;  2IQ7 A;  2NTB A;  3VMW A;  1O88 A;  1QCX A;  3T9G A;  2O17 A;  1OGM X;  1KTW A;  2O1D A;  1DBG A;  4OJL A;  4XLA A;  1O8K A;  4XMY A;  2INU A;  4YEJ A;  2INV A;  4Z06 A;  1WMR A;  1PE9 A;  3GQA A;  2X3H A;  1O8J A;  4Z05 A;  4AVZ A;  5C1C A;  1EE6 A;  1VBL A;  1X0C A;  3ZSC A;  2VJJ A;  4XNF A;  3EQO A;  4XON A;  2NSP A;  2VBM A;  1PXZ A;  2O0V A;  1QJV A;  4XN3 A;  1O8D A;  2NTQ A;  2NST A;  2PYH A;  4OJ6 A;  3B90 A;  1BN8 A;  3FY3 A;  4W8R A;  3B4N A;  1O8I A;  4YZX A;  3GQ8 A;  5C1E A;  2NT6 A;  4PMH A;  4W8T A;  3VMV A;  2NTP A;  1XG2 A;  1IDK A;  1O8F A;  4XQF A;  4W8S A;  4XM3 A;  1IA5 A;  2NZM A;  4MR0 A;  1KCD A;  4OJP A;  2X6Y A;  3WWG A;  4XLF A;  3LMW A;  4XLC A;  4OJ5 A;  2PEC A;  1PLU A;  2QY1 A;  2EWE A;  2NT9 A;  1BHE A;  4W8Q A;  1NHC A;  4XR6 A;  4EW9 A;  1OGO X;  4OJO A;  1IB4 A;  1JRG A;  4XKV A;  1HG8 A;  4XKW A;  2O04 A;  1CZF A;  3EQN A;  4YZQ A;  1O8M A;  2QX3 A;  3ZPP A;  3GRH A;  4MXN A;  3SUC A;  3JUR A;  4Z03 A;  2BSP A;  1OFL A;  4I84 A;  2X6X A;  4XLE A;  1O8H A;  1KCC A;  4NK6 A;  1RMG A;  2UVE A;  2O0W A;  1RWR A;  4YEL A;  1IDJ A;  1K5C A;  4URR A;  1RU4 A;  4XN0 A;  2PYG A;  2VBE A;  2ODL A;  3VST A;  1AIR A;  1O8E A;  4XLH A;  4XOT A;  4XL9 A;  4YZA A;  3UW0 A;  1H80 A;  4U49 A;  2Z8G A;  4C2L A;  1OFM A; 
#chains in the Genus database with same CATH topology
 1GQ8 A;  3KRG A;  4NK8 A;  5AMV A;  3GQ9 A;  4OZY A;  4XOP A;  1OOC A;  2QXZ A;  2J8K A;  1LM1 A;  2X6W A;  2X85 A;  3B8Y A;  4YZ0 A;  2XTX A;  5DNS A;  4XOR A;  3VSV A;  1O8L A;  2VBK A;  4U4B A;  3VSU A;  1QQ1 A;  3BH6 B;  1EA0 A;  2VJI A;  3AK5 A;  3GQ7 A;  1DAB A;  4OZZ A;  1O8G A;  4HWV A;  1DBO A;  2UVF A;  2IOU G;  1JTA A;  2QZA A;  2XTW A;  3PSZ A;  2IQ7 A;  2NTB A;  3NB2 A;  3VMW A;  1O88 A;  2VFN A;  2YUH A;  1QCX A;  3DU1 X;  3T9G A;  2O17 A;  1OGM X;  1TYW A;  1KTW A;  2O1D A;  1DBG A;  4OJL A;  4XLA A;  1O8K A;  2BM6 A;  3N6Z A;  4XMY A;  4YFO A;  2INU A;  3TH0 A;  4YEJ A;  2INV A;  4Z06 A;  1WMR A;  3ML3 A;  1PE9 A;  1TYX A;  1QA2 A;  3GQA A;  2X3H A;  1O8J A;  2XC1 A;  4OPW A;  4Z05 A;  4AVZ A;  1L1I A;  5C1C A;  1EE6 A;  1LLZ A;  1VBL A;  1X0C A;  3ZSC A;  2VJJ A;  1TSP A;  3EQO A;  2VFQ A;  4XON A;  2NSP A;  2VBM A;  1PXZ A;  2O0V A;  4XNF A;  3RIQ A;  1KQ5 A;  1QJV A;  4XN3 A;  1O8D A;  2NTQ A;  2XT2 A;  2NST A;  1QA3 A;  2PYH A;  4OJ6 A;  1CLW A;  2VFO A;  3B90 A;  1BN8 A;  2XT4 A;  3N90 A;  3FY3 A;  4W8R A;  2BM5 A;  3B4N A;  1O8I A;  1TYU A;  4YZX A;  3GQ8 A;  5C1E A;  2NT6 A;  4PMH A;  4W8T A;  3SY2 A;  2V5I A;  2NTP A;  1XG2 A;  1IDK A;  1O8F A;  3SYJ A;  3VMV A;  4XQF A;  4W8S A;  1QRC A;  3H09 A;  4XM3 A;  1K8F A;  3JX8 A;  3P4G A;  1IA5 A;  2NZM A;  1QA1 A;  3NAW A;  4MR0 A;  4YDT A;  5JMC B;  1KCD A;  4OJP A;  2X6Y A;  3WWG A;  2BX6 A;  4XLF A;  2XTY A;  3LMW A;  3PSS A;  4XLC A;  4OJ5 A;  2PEC A;  1HF2 A;  1PLU A;  2QY1 A;  2EWE A;  2NT9 A;  1BHE A;  2G0Y A;  2QYU A;  4W8Q A;  1NHC A;  4XR6 A;  4EW9 A;  1OGO X;  4OJO A;  2F3L A;  1IB4 A;  1JRG A;  4XKV A;  1HG8 A;  4XKW A;  2O04 A;  3SZE A;  1CZF A;  5JLV C;  2VFP A;  3EQN A;  1OFE A;  2VFM A;  3BH7 B;  4YZQ A;  1O8M A;  2J8I A;  2QX3 A;  1EZG A;  3ZPP A;  3GRH A;  4MXN A;  1QRB A;  3LYC A;  3SUC A;  3JUR A;  4YC5 A;  3PET A;  2BSP A;  4Z03 A;  4OM9 A;  1OFL A;  4I84 A;  2X6X A;  2W7Z A;  4XLE A;  1O8H A;  1KCC A;  4NK6 A;  1K4Z A;  1RMG A;  2BM4 A;  2O0W A;  2UVE A;  1RWR A;  4YEI A;  1OFD A;  4YEL A;  1IDJ A;  1K5C A;  1LLW A;  1RU4 A;  4URR A;  4XN0 A;  2PYG A;  2VBE A;  2O6W A;  4V02 C;  2ODL A;  1TYV A;  3VST A;  1AIR A;  4JRA C;  1O8E A;  4XLH A;  1WXR A;  2B0R A;  4KH3 A;  4XOT A;  3LJY A;  4XL9 A;  4YZA A;  3UW0 A;  1H80 A;  3SQV A;  4U49 A;  2BM7 A;  4YCQ A;  2Z8G A;  4C2L A;  1OFM A; 
#chains in the Genus database with same CATH homology
 1GQ8 A;  3KRG A;  4NK8 A;  5AMV A;  3GQ9 A;  4OZY A;  4XOP A;  1OOC A;  2QXZ A;  2X6W A;  2X85 A;  3B8Y A;  4YZ0 A;  4XOR A;  3VSV A;  1O8L A;  2VBK A;  4U4B A;  3VSU A;  2VJI A;  3GQ7 A;  4OZZ A;  1O8G A;  4HWV A;  1DBO A;  2UVF A;  1JTA A;  2IQ7 A;  2NTB A;  3VMW A;  1O88 A;  1QCX A;  3T9G A;  2O17 A;  1OGM X;  1KTW A;  2O1D A;  1DBG A;  4OJL A;  4XLA A;  1O8K A;  4XMY A;  2INU A;  4YEJ A;  2INV A;  4Z06 A;  1WMR A;  1PE9 A;  3GQA A;  2X3H A;  1O8J A;  4Z05 A;  4AVZ A;  5C1C A;  1EE6 A;  1VBL A;  1X0C A;  3ZSC A;  2VJJ A;  4XNF A;  3EQO A;  4XON A;  2NSP A;  2VBM A;  1PXZ A;  2O0V A;  1QJV A;  4XN3 A;  1O8D A;  2NTQ A;  2NST A;  2PYH A;  4OJ6 A;  3B90 A;  1BN8 A;  3FY3 A;  4W8R A;  3B4N A;  1O8I A;  4YZX A;  3GQ8 A;  5C1E A;  2NT6 A;  4PMH A;  4W8T A;  3VMV A;  2NTP A;  1XG2 A;  1IDK A;  1O8F A;  4XQF A;  4W8S A;  4XM3 A;  1IA5 A;  2NZM A;  4MR0 A;  1KCD A;  4OJP A;  2X6Y A;  3WWG A;  4XLF A;  3LMW A;  4XLC A;  4OJ5 A;  2PEC A;  1PLU A;  2QY1 A;  2EWE A;  2NT9 A;  1BHE A;  4W8Q A;  1NHC A;  4XR6 A;  4EW9 A;  1OGO X;  4OJO A;  1IB4 A;  1JRG A;  4XKV A;  1HG8 A;  4XKW A;  2O04 A;  1CZF A;  3EQN A;  4YZQ A;  1O8M A;  2QX3 A;  3ZPP A;  3GRH A;  4MXN A;  3SUC A;  3JUR A;  4Z03 A;  2BSP A;  1OFL A;  4I84 A;  2X6X A;  4XLE A;  1O8H A;  1KCC A;  4NK6 A;  1RMG A;  2UVE A;  2O0W A;  1RWR A;  4YEL A;  1IDJ A;  1K5C A;  4URR A;  1RU4 A;  4XN0 A;  2PYG A;  2VBE A;  2ODL A;  3VST A;  1AIR A;  1O8E A;  4XLH A;  4XOT A;  4XL9 A;  4YZA A;  3UW0 A;  1H80 A;  4U49 A;  2Z8G A;  4C2L A;  1OFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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