3JURA

The crystal structure of a hyperthermoactive exopolygalacturonase from thermotoga maritima
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
444
structure length
444
Chain Sequence
ELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEGVFLTGPIHLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEKLYIEGKALLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
molecule keywords Exo-poly-alpha-D-galacturonosidase
total genus 192
structure length 444
sequence length 444
chains with identical sequence B, C, D
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2009-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3jurA00
2BSPA 4XKWA 1NHCA 1PXZA 1VBLA 4W8RA 4YELA 2O0VA 3GQ8A 2ODLA 4OJ5A 2INVA 2O0WA 3KRGA 4OZZA 1H80A 1O8JA 2PYHA 2VBMA 3SUCA 1EE6A 4XORA 1RWRA 2QXZA 4HWVA 4OJOA 4XOPA 1CZFA 3B8YA 2QX3A 1GQ8A 2X3HA 1IDKA 1PLUA 3EQOA 1WMRA 4XKVA 1JTAA 1KTWA 3B90A 2X6XA 1OFLA 2VJIA 3FY3A 3VSVA 4U49A 2O17A 1IA5A 4EW9A 5AMVA 4AVZA 1O8DA 1K5CA 3ZSCA 2O1DA 4PMHA 4MR0A 4XONA 3LMWA 4Z06A 4XLEA 4Z05A 2UVEA 4Z03A 1XG2A 2INUA 3JURA 2X6YA 1O8HA 1BN8A 2VBKA 4YZXA 1X0CA 2NSPA 4XNFA 3VMWA 1DBGA 1QJVA 2IQ7A 4C2LA 1RU4A 4YZAA 2Z8GA 4YZ0A 1QCXA 5C1CA 4XN3A 4XR6A 4U4BA 4URRA 4XLCA 1O8EA 4XMYA 1OGOX 2EWEA 3GQAA 2VBEA 4XN0A 4NK6A 4NK8A 4W8TA 3ZPPA 1IDJA 1RMGA 1O8LA 3VMVA 1KCDA 2NT9A 1IB4A 4OJ6A 3GRHA 3WWGA 4XM3A 1OFMA 2UVFA 4XLAA 4XLHA 2X85A 1HG8A 3B4NA 4OZYA 3GQ7A 1AIRA 2PECA 4YZQA 3UW0A 3VSTA 2VJJA 1O88A 1O8GA 3GQ9A 1KCCA 1PE9A 2NTPA 4XL9A 1O8IA 1BHEA 2X6WA 2NTBA 4OJPA 2NSTA 1OGMX 4W8QA 1O8KA 4OJLA 2NTQA 3VSUA 4W8SA 1OOCA 1JRGA 2QY1A 4XQFA 2O04A 4XOTA 1DBOA 1O8MA 4MXNA 4I84A 5C1EA 3EQNA 2NT6A 2PYGA 4XLFA 4YEJA 2NZMA 3T9GA 1O8FA
chains in the Genus database with same CATH superfamily
2BSPA 2VFNA 4XKWA 1DABA 1NHCA 1PXZA 1VBLA 4W8RA 2QYUA 3LYCA 4YELA 2F3LA 2O0VA 3GQ8A 2ODLA 4OJ5A 1LLWA 2INVA 2O0WA 3KRGA 4OZZA 1H80A 1O8JA 2PYHA 1QQ1A 2VBMA 3SUCA 1EE6A 4XORA 2YUHA 1RWRA 2QXZA 4HWVA 4OJOA 4XOPA 1L1IA 1CZFA 3JX8A 3B8YA 4OM9A 3RIQA 3H09A 1CLWA 2QX3A 1KQ5A 1GQ8A 3ML3A 2X3HA 1IDKA 1PLUA 3EQOA 2XT2A 1WMRA 4XKVA 1JTAA 1KTWA 1TYVA 2QZAA 3B90A 2X6XA 1OFLA 2VJIA 2XTYA 3NAWA 5JMCB 3FY3A 4YC5A 3VSVA 4U49A 2O17A 1IA5A 4EW9A 5AMVA 3N6ZA 2VFMA 2XC1A 4AVZA 1O8DA 1K5CA 3ZSCA 2O1DA 4PMHA 2BM4A 2O6WA 4MR0A 4XONA 1QA1A 3LMWA 4Z06A 4XLEA 4Z05A 2UVEA 4V02C 3DU1X 3BH7B 4Z03A 1XG2A 2J8IA 5JLVC 2XT4A 1QA2A 2INUA 3PSZA 3JURA 2BM7A 2X6YA 1TYUA 1EZGA 3PSSA 1O8HA 1BN8A 2VBKA 4YZXA 1X0CA 2NSPA 4XNFA 3VMWA 1DBGA 2XTWA 1QJVA 1QRCA 2IQ7A 2J8KA 4C2LA 1RU4A 4YZAA 2Z8GA 3SY2A 1EA0A 4YZ0A 3N90A 1OFEA 1QCXA 2BM5A 5C1CA 4XN3A 4XR6A 4U4BA 4YEIA 1TYXA 4URRA 4XLCA 1O8EA 4XMYA 1OGOX 2VFOA 2B0RA 1HF2A 2EWEA 2W7ZA 3GQAA 2VBEA 4XN0A 4NK6A 4NK8A 4W8TA 3ZPPA 1IDJA 1RMGA 2VFQA 1O8LA 3VMVA 1KCDA 3SZEA 2NT9A 2BX6A 3LJYA 1IB4A 4OJ6A 1QA3A 4YCQA 3GRHA 4OPWA 3P4GA 3WWGA 3PETA 4XM3A 1OFMA 1QRBA 2UVFA 4XLAA 4XLHA 2X85A 5DNSA 1HG8A 1LLZA 3B4NA 4OZYA 3SYJA 1LM1A 1AIRA 3GQ7A 2PECA 4KH3A 4YZQA 3UW0A 1TYWA 3VSTA 2VJJA 2VFPA 4YFOA 1O88A 1O8GA 3GQ9A 1KCCA 2BM6A 1PE9A 1K4ZA 2NTPA 4XL9A 1O8IA 1BHEA 1K8FA 3AK5A 2IOUG 3BH6B 2G0YA 2NTBA 2V5IA 2X6WA 4OJPA 1WXRA 2NSTA 1OGMX 4W8QA 1O8KA 4OJLA 2NTQA 3VSUA 1TSPA 4W8SA 1OOCA 1OFDA 1JRGA 2QY1A 2XTXA 2O04A 4XQFA 4XOTA 1DBOA 1O8MA 4YDTA 4MXNA 4I84A 5C1EA 3NB2A 4JRAC 3EQNA 2NT6A 2PYGA 3SQVA 3TH0A 4XLFA 4YEJA 2NZMA 3T9GA 1O8FA
chains in the Genus database with same CATH topology
2BSPA 4XKWA 1NHCA 1PXZA 1VBLA 4W8RA 4YELA 2O0VA 3GQ8A 2ODLA 4OJ5A 2INVA 2O0WA 3KRGA 4OZZA 1H80A 1O8JA 2PYHA 2VBMA 3SUCA 1EE6A 4XORA 1RWRA 2QXZA 4HWVA 4OJOA 4XOPA 1CZFA 3B8YA 2QX3A 1GQ8A 2X3HA 1IDKA 1PLUA 3EQOA 1WMRA 4XKVA 1JTAA 1KTWA 3B90A 2X6XA 1OFLA 2VJIA 3FY3A 3VSVA 4U49A 2O17A 1IA5A 4EW9A 5AMVA 4AVZA 1O8DA 1K5CA 3ZSCA 2O1DA 4PMHA 4MR0A 4XONA 3LMWA 4Z06A 4XLEA 4Z05A 2UVEA 4Z03A 1XG2A 2INUA 3JURA 2X6YA 1O8HA 1BN8A 2VBKA 4YZXA 1X0CA 2NSPA 4XNFA 3VMWA 1DBGA 1QJVA 2IQ7A 4C2LA 1RU4A 4YZAA 2Z8GA 4YZ0A 1QCXA 5C1CA 4XN3A 4XR6A 4U4BA 4URRA 4XLCA 1O8EA 4XMYA 1OGOX 2EWEA 3GQAA 2VBEA 4XN0A 4NK6A 4NK8A 4W8TA 3ZPPA 1IDJA 1RMGA 1O8LA 3VMVA 1KCDA 2NT9A 1IB4A 4OJ6A 3GRHA 3WWGA 4XM3A 1OFMA 2UVFA 4XLAA 4XLHA 2X85A 1HG8A 3B4NA 4OZYA 3GQ7A 1AIRA 2PECA 4YZQA 3UW0A 3VSTA 2VJJA 1O88A 1O8GA 3GQ9A 1KCCA 1PE9A 2NTPA 4XL9A 1O8IA 1BHEA 2X6WA 2NTBA 4OJPA 2NSTA 1OGMX 4W8QA 1O8KA 4OJLA 2NTQA 3VSUA 4W8SA 1OOCA 1JRGA 2QY1A 4XQFA 2O04A 4XOTA 1DBOA 1O8MA 4MXNA 4I84A 5C1EA 3EQNA 2NT6A 2PYGA 4XLFA 4YEJA 2NZMA 3T9GA 1O8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BSP A;  4XKW A;  1NHC A;  1PXZ A;  1VBL A;  4W8R A;  4YEL A;  2O0V A;  3GQ8 A;  2ODL A;  4OJ5 A;  2INV A;  2O0W A;  3KRG A;  4OZZ A;  1H80 A;  1O8J A;  2PYH A;  2VBM A;  3SUC A;  1EE6 A;  4XOR A;  1RWR A;  2QXZ A;  4HWV A;  4OJO A;  4XOP A;  1CZF A;  3B8Y A;  2QX3 A;  1GQ8 A;  2X3H A;  1IDK A;  1PLU A;  3EQO A;  1WMR A;  4XKV A;  1JTA A;  1KTW A;  3B90 A;  2X6X A;  1OFL A;  2VJI A;  3FY3 A;  3VSV A;  4U49 A;  2O17 A;  1IA5 A;  4EW9 A;  5AMV A;  4AVZ A;  1O8D A;  1K5C A;  3ZSC A;  2O1D A;  4PMH A;  4MR0 A;  4XON A;  3LMW A;  4Z06 A;  4XLE A;  4Z05 A;  2UVE A;  4Z03 A;  1XG2 A;  2INU A;  3JUR A;  2X6Y A;  1O8H A;  1BN8 A;  2VBK A;  4YZX A;  1X0C A;  2NSP A;  4XNF A;  3VMW A;  1DBG A;  1QJV A;  2IQ7 A;  4C2L A;  1RU4 A;  4YZA A;  2Z8G A;  4YZ0 A;  1QCX A;  5C1C A;  4XN3 A;  4XR6 A;  4U4B A;  4URR A;  4XLC A;  1O8E A;  4XMY A;  1OGO X;  2EWE A;  3GQA A;  2VBE A;  4XN0 A;  4NK6 A;  4NK8 A;  4W8T A;  3ZPP A;  1IDJ A;  1RMG A;  1O8L A;  3VMV A;  1KCD A;  2NT9 A;  1IB4 A;  4OJ6 A;  3GRH A;  3WWG A;  4XM3 A;  1OFM A;  2UVF A;  4XLA A;  4XLH A;  2X85 A;  1HG8 A;  3B4N A;  4OZY A;  3GQ7 A;  1AIR A;  2PEC A;  4YZQ A;  3UW0 A;  3VST A;  2VJJ A;  1O88 A;  1O8G A;  3GQ9 A;  1KCC A;  1PE9 A;  2NTP A;  4XL9 A;  1O8I A;  1BHE A;  2X6W A;  2NTB A;  4OJP A;  2NST A;  1OGM X;  4W8Q A;  1O8K A;  4OJL A;  2NTQ A;  3VSU A;  4W8S A;  1OOC A;  1JRG A;  2QY1 A;  4XQF A;  2O04 A;  4XOT A;  1DBO A;  1O8M A;  4MXN A;  4I84 A;  5C1E A;  3EQN A;  2NT6 A;  2PYG A;  4XLF A;  4YEJ A;  2NZM A;  3T9G A;  1O8F A; 
#chains in the Genus database with same CATH topology
 2BSP A;  2VFN A;  4XKW A;  1DAB A;  1NHC A;  1PXZ A;  1VBL A;  4W8R A;  2QYU A;  3LYC A;  4YEL A;  2F3L A;  2O0V A;  3GQ8 A;  2ODL A;  4OJ5 A;  1LLW A;  2INV A;  2O0W A;  3KRG A;  4OZZ A;  1H80 A;  1O8J A;  2PYH A;  1QQ1 A;  2VBM A;  3SUC A;  1EE6 A;  4XOR A;  2YUH A;  1RWR A;  2QXZ A;  4HWV A;  4OJO A;  4XOP A;  1L1I A;  1CZF A;  3JX8 A;  3B8Y A;  4OM9 A;  3RIQ A;  3H09 A;  1CLW A;  2QX3 A;  1KQ5 A;  1GQ8 A;  3ML3 A;  2X3H A;  1IDK A;  1PLU A;  3EQO A;  2XT2 A;  1WMR A;  4XKV A;  1JTA A;  1KTW A;  1TYV A;  2QZA A;  3B90 A;  2X6X A;  1OFL A;  2VJI A;  2XTY A;  3NAW A;  5JMC B;  3FY3 A;  4YC5 A;  3VSV A;  4U49 A;  2O17 A;  1IA5 A;  4EW9 A;  5AMV A;  3N6Z A;  2VFM A;  2XC1 A;  4AVZ A;  1O8D A;  1K5C A;  3ZSC A;  2O1D A;  4PMH A;  2BM4 A;  2O6W A;  4MR0 A;  4XON A;  1QA1 A;  3LMW A;  4Z06 A;  4XLE A;  4Z05 A;  2UVE A;  4V02 C;  3DU1 X;  3BH7 B;  4Z03 A;  1XG2 A;  2J8I A;  5JLV C;  2XT4 A;  1QA2 A;  2INU A;  3PSZ A;  3JUR A;  2BM7 A;  2X6Y A;  1TYU A;  1EZG A;  3PSS A;  1O8H A;  1BN8 A;  2VBK A;  4YZX A;  1X0C A;  2NSP A;  4XNF A;  3VMW A;  1DBG A;  2XTW A;  1QJV A;  1QRC A;  2IQ7 A;  2J8K A;  4C2L A;  1RU4 A;  4YZA A;  2Z8G A;  3SY2 A;  1EA0 A;  4YZ0 A;  3N90 A;  1OFE A;  1QCX A;  2BM5 A;  5C1C A;  4XN3 A;  4XR6 A;  4U4B A;  4YEI A;  1TYX A;  4URR A;  4XLC A;  1O8E A;  4XMY A;  1OGO X;  2VFO A;  2B0R A;  1HF2 A;  2EWE A;  2W7Z A;  3GQA A;  2VBE A;  4XN0 A;  4NK6 A;  4NK8 A;  4W8T A;  3ZPP A;  1IDJ A;  1RMG A;  2VFQ A;  1O8L A;  3VMV A;  1KCD A;  3SZE A;  2NT9 A;  2BX6 A;  3LJY A;  1IB4 A;  4OJ6 A;  1QA3 A;  4YCQ A;  3GRH A;  4OPW A;  3P4G A;  3WWG A;  3PET A;  4XM3 A;  1OFM A;  1QRB A;  2UVF A;  4XLA A;  4XLH A;  2X85 A;  5DNS A;  1HG8 A;  1LLZ A;  3B4N A;  4OZY A;  3SYJ A;  1LM1 A;  1AIR A;  3GQ7 A;  2PEC A;  4KH3 A;  4YZQ A;  3UW0 A;  1TYW A;  3VST A;  2VJJ A;  2VFP A;  4YFO A;  1O88 A;  1O8G A;  3GQ9 A;  1KCC A;  2BM6 A;  1PE9 A;  1K4Z A;  2NTP A;  4XL9 A;  1O8I A;  1BHE A;  1K8F A;  3AK5 A;  2IOU G;  3BH6 B;  2G0Y A;  2NTB A;  2V5I A;  2X6W A;  4OJP A;  1WXR A;  2NST A;  1OGM X;  4W8Q A;  1O8K A;  4OJL A;  2NTQ A;  3VSU A;  1TSP A;  4W8S A;  1OOC A;  1OFD A;  1JRG A;  2QY1 A;  2XTX A;  2O04 A;  4XQF A;  4XOT A;  1DBO A;  1O8M A;  4YDT A;  4MXN A;  4I84 A;  5C1E A;  3NB2 A;  4JRA C;  3EQN A;  2NT6 A;  2PYG A;  3SQV A;  3TH0 A;  4XLF A;  4YEJ A;  2NZM A;  3T9G A;  1O8F A; 
#chains in the Genus database with same CATH homology
 2BSP A;  4XKW A;  1NHC A;  1PXZ A;  1VBL A;  4W8R A;  4YEL A;  2O0V A;  3GQ8 A;  2ODL A;  4OJ5 A;  2INV A;  2O0W A;  3KRG A;  4OZZ A;  1H80 A;  1O8J A;  2PYH A;  2VBM A;  3SUC A;  1EE6 A;  4XOR A;  1RWR A;  2QXZ A;  4HWV A;  4OJO A;  4XOP A;  1CZF A;  3B8Y A;  2QX3 A;  1GQ8 A;  2X3H A;  1IDK A;  1PLU A;  3EQO A;  1WMR A;  4XKV A;  1JTA A;  1KTW A;  3B90 A;  2X6X A;  1OFL A;  2VJI A;  3FY3 A;  3VSV A;  4U49 A;  2O17 A;  1IA5 A;  4EW9 A;  5AMV A;  4AVZ A;  1O8D A;  1K5C A;  3ZSC A;  2O1D A;  4PMH A;  4MR0 A;  4XON A;  3LMW A;  4Z06 A;  4XLE A;  4Z05 A;  2UVE A;  4Z03 A;  1XG2 A;  2INU A;  3JUR A;  2X6Y A;  1O8H A;  1BN8 A;  2VBK A;  4YZX A;  1X0C A;  2NSP A;  4XNF A;  3VMW A;  1DBG A;  1QJV A;  2IQ7 A;  4C2L A;  1RU4 A;  4YZA A;  2Z8G A;  4YZ0 A;  1QCX A;  5C1C A;  4XN3 A;  4XR6 A;  4U4B A;  4URR A;  4XLC A;  1O8E A;  4XMY A;  1OGO X;  2EWE A;  3GQA A;  2VBE A;  4XN0 A;  4NK6 A;  4NK8 A;  4W8T A;  3ZPP A;  1IDJ A;  1RMG A;  1O8L A;  3VMV A;  1KCD A;  2NT9 A;  1IB4 A;  4OJ6 A;  3GRH A;  3WWG A;  4XM3 A;  1OFM A;  2UVF A;  4XLA A;  4XLH A;  2X85 A;  1HG8 A;  3B4N A;  4OZY A;  3GQ7 A;  1AIR A;  2PEC A;  4YZQ A;  3UW0 A;  3VST A;  2VJJ A;  1O88 A;  1O8G A;  3GQ9 A;  1KCC A;  1PE9 A;  2NTP A;  4XL9 A;  1O8I A;  1BHE A;  2X6W A;  2NTB A;  4OJP A;  2NST A;  1OGM X;  4W8Q A;  1O8K A;  4OJL A;  2NTQ A;  3VSU A;  4W8S A;  1OOC A;  1JRG A;  2QY1 A;  4XQF A;  2O04 A;  4XOT A;  1DBO A;  1O8M A;  4MXN A;  4I84 A;  5C1E A;  3EQN A;  2NT6 A;  2PYG A;  4XLF A;  4YEJ A;  2NZM A;  3T9G A;  1O8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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