3JURA

The crystal structure of a hyperthermoactive exopolygalacturonase from thermotoga maritima
Total Genus 192
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
444
structure length
444
Chain Sequence
ELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEGVFLTGPIHLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEKLYIEGKALLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Exo-poly-alpha-D-galacturonosidase
publication title The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
total genus 192
structure length 444
sequence length 444
chains with identical sequence B, C, D
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2009-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3jurA00
1O8EA 2NZMA 5C1EA 3VSUA 1NHCA 3EQOA 2ODLA 2X3HA 1OOCA 1PXZA 4YZ0A 1IDJA 4OZYA 2VJJA 3VMVA 3T9GA 3GQ8A 4Z05A 3B4NA 4Z06A 1O8FA 2Z8GA 3GQ7A 1DBOA 3VMWA 3VSTA 4PMHA 2PYHA 3JURA 4I84A 4EW9A 4XNFA 4OJLA 4XR6A 4U49A 4XL9A 1O8KA 1O88A 3GQ9A 2NTBA 3FY3A 4XLCA 4U4BA 4W8TA 4YZAA 4MR0A 2UVEA 4XMYA 1RMGA 2UVFA 3SUCA 2NT6A 3UW0A 1AIRA 1JTAA 4XN3A 1CZFA 1RU4A 4Z03A 4XLAA 2QXZA 3ZPPA 1O8LA 2NSTA 1O8DA 3LMWA 1EE6A 4OJPA 5AMVA 1HG8A 3ZSCA 1VBLA 4XKWA 3EQNA 2NT9A 2NSPA 4YEJA 1OFLA 2X6XA 2VBMA 2VBEA 4OJOA 2O04A 4W8QA 4W8SA 2X6WA 4XONA 3WWGA 1BN8A 2INVA 1O8HA 3GRHA 3VSVA 1IB4A 4XLEA 2BSPA 1JRGA 1H80A 4XKVA 4XM3A 3B90A 4XORA 2O0VA 1OFMA 2QX3A 3KRGA 2O17A 4YZXA 4XLFA 4YZQA 1PLUA 1IA5A 4XOTA 4XLHA 1PE9A 2VJIA 1O8IA 1IDKA 1WMRA 4OZZA 4OJ5A 1KCCA 2O0WA 4HWVA 1K5CA 2PYGA 2QY1A 4YELA 4NK8A 1KTWA 1GQ8A 1O8GA 1QCXA 4URRA 4OJ6A 1O8JA 2NTPA 2INUA 1X0CA 2VBKA 1DBGA 4MXNA 4AVZA 4C2LA 1RWRA 2NTQA 4XQFA 2PECA 3GQAA 2EWEA 4NK6A 2IQ7A 2X85A 4W8RA 1O8MA 1OGOX 2O1DA 1KCDA 1BHEA 1QJVA 5C1CA 4XN0A 4XOPA 1XG2A 2X6YA 3B8YA 1OGMX
chains in the Genus database with same CATH superfamily
1O8EA 2NZMA 2O6WA 2XTXA 5C1EA 3SYJA 3VSUA 1NHCA 3EQOA 1L1IA 2G0YA 2ODLA 2X3HA 1OOCA 3UW0A 1PXZA 1K8FA 1K4ZA 1IDJA 4OZYA 4YZ0A 2VJJA 3PSSA 3VMVA 1TSPA 3T9GA 2VFMA 3GQ8A 3PSZA 3TH0A 4Z05A 3B4NA 4Z06A 3SUCA 1O8FA 2Z8GA 3GQ7A 1DBOA 3VMWA 3VSTA 3SZEA 3AK5A 4PMHA 5JMCB 2PYHA 4KH3A 3JURA 3NB2A 1EA0A 1LM1A 4I84A 4XNFA 4YDTA 4OJLA 4EW9A 4XR6A 4U49A 4XL9A 3SQVA 1KQ5A 2V5IA 1O8KA 1O88A 3GQ9A 4YFOA 3H09A 2NTBA 3FY3A 4XLCA 4U4BA 4W8TA 1TYUA 4YZAA 4MR0A 1CLWA 3P4GA 2UVEA 1HF2A 4JRAC 4XMYA 1RMGA 2XT2A 3LYCA 2QZAA 2UVFA 3DU1X 2NT6A 4OPWA 1QRBA 1AIRA 1JTAA 4XN3A 1CZFA 1RU4A 4Z03A 3RIQA 2XT4A 4XLAA 2QXZA 3ZPPA 5JLVC 1O8LA 4YC5A 2NSTA 2BX6A 1O8DA 2F3LA 1EE6A 2IOUG 3LMWA 1QRCA 2BM4A 4OJPA 1OFEA 1TYXA 5AMVA 1HG8A 3ZSCA 1VBLA 4XKWA 3EQNA 2NT9A 2NSPA 3N90A 4YEJA 1OFLA 2X6XA 2VBMA 2VBEA 4OJOA 4YCQA 2O04A 4W8QA 4W8SA 2X6WA 1QA2A 4XONA 1TYWA 3WWGA 1QA3A 1BN8A 2INVA 1TYVA 5DNSA 1O8HA 3GRHA 3VSVA 1IB4A 2J8IA 2VFNA 4XLEA 1QA1A 2BSPA 1JRGA 1H80A 4XKVA 4XM3A 2QYUA 3B90A 4XORA 2O0VA 1OFMA 2VFQA 2QX3A 2XTWA 3BH7B 3KRGA 2O17A 2VFPA 3JX8A 4YZXA 4XLFA 2XC1A 4YZQA 1PLUA 2B0RA 2YUHA 3NAWA 4XLHA 4XOTA 1IA5A 1WXRA 1PE9A 2VJIA 1LLWA 1O8IA 1IDKA 1WMRA 4OZZA 4OJ5A 4OM9A 4V02C 2O0WA 4HWVA 1K5CA 2PYGA 2QY1A 1KCCA 4YELA 2W7ZA 2BM5A 3SY2A 4NK8A 3BH6B 1KTWA 1GQ8A 1O8GA 1QCXA 4URRA 4OJ6A 2XTYA 1O8JA 2NTPA 2INUA 1X0CA 2VBKA 1DBGA 4MXNA 3N6ZA 4AVZA 4C2LA 1RWRA 2NTQA 3ML3A 3PETA 4XQFA 1DABA 1EZGA 1OFDA 2PECA 3GQAA 2EWEA 4NK6A 2IQ7A 2BM7A 2J8KA 2X85A 4W8RA 1O8MA 4YEIA 1OGOX 2O1DA 1KCDA 1BHEA 3LJYA 1QJVA 2BM6A 2VFOA 5C1CA 4XN0A 1LLZA 4XOPA 1QQ1A 1XG2A 2X6YA 3B8YA 1OGMX
chains in the Genus database with same CATH topology
1O8EA 2NZMA 5C1EA 3VSUA 1NHCA 3EQOA 2ODLA 2X3HA 1OOCA 1PXZA 4YZ0A 1IDJA 4OZYA 2VJJA 3VMVA 3T9GA 3GQ8A 4Z05A 3B4NA 4Z06A 1O8FA 2Z8GA 3GQ7A 1DBOA 3VMWA 3VSTA 4PMHA 2PYHA 3JURA 4I84A 4EW9A 4XNFA 4OJLA 4XR6A 4U49A 4XL9A 1O8KA 1O88A 3GQ9A 2NTBA 3FY3A 4XLCA 4U4BA 4W8TA 4YZAA 4MR0A 2UVEA 4XMYA 1RMGA 2UVFA 3SUCA 2NT6A 3UW0A 1AIRA 1JTAA 4XN3A 1CZFA 1RU4A 4Z03A 4XLAA 2QXZA 3ZPPA 1O8LA 2NSTA 1O8DA 3LMWA 1EE6A 4OJPA 5AMVA 1HG8A 3ZSCA 1VBLA 4XKWA 3EQNA 2NT9A 2NSPA 4YEJA 1OFLA 2X6XA 2VBMA 2VBEA 4OJOA 2O04A 4W8QA 4W8SA 2X6WA 4XONA 3WWGA 1BN8A 2INVA 1O8HA 3GRHA 3VSVA 1IB4A 4XLEA 2BSPA 1JRGA 1H80A 4XKVA 4XM3A 3B90A 4XORA 2O0VA 1OFMA 2QX3A 3KRGA 2O17A 4YZXA 4XLFA 4YZQA 1PLUA 1IA5A 4XOTA 4XLHA 1PE9A 2VJIA 1O8IA 1IDKA 1WMRA 4OZZA 4OJ5A 1KCCA 2O0WA 4HWVA 1K5CA 2PYGA 2QY1A 4YELA 4NK8A 1KTWA 1GQ8A 1O8GA 1QCXA 4URRA 4OJ6A 1O8JA 2NTPA 2INUA 1X0CA 2VBKA 1DBGA 4MXNA 4AVZA 4C2LA 1RWRA 2NTQA 4XQFA 2PECA 3GQAA 2EWEA 4NK6A 2IQ7A 2X85A 4W8RA 1O8MA 1OGOX 2O1DA 1KCDA 1BHEA 1QJVA 5C1CA 4XN0A 4XOPA 1XG2A 2X6YA 3B8YA 1OGMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8E A;  2NZM A;  5C1E A;  3VSU A;  1NHC A;  3EQO A;  2ODL A;  2X3H A;  1OOC A;  1PXZ A;  4YZ0 A;  1IDJ A;  4OZY A;  2VJJ A;  3VMV A;  3T9G A;  3GQ8 A;  4Z05 A;  3B4N A;  4Z06 A;  1O8F A;  2Z8G A;  3GQ7 A;  1DBO A;  3VMW A;  3VST A;  4PMH A;  2PYH A;  3JUR A;  4I84 A;  4EW9 A;  4XNF A;  4OJL A;  4XR6 A;  4U49 A;  4XL9 A;  1O8K A;  1O88 A;  3GQ9 A;  2NTB A;  3FY3 A;  4XLC A;  4U4B A;  4W8T A;  4YZA A;  4MR0 A;  2UVE A;  4XMY A;  1RMG A;  2UVF A;  3SUC A;  2NT6 A;  3UW0 A;  1AIR A;  1JTA A;  4XN3 A;  1CZF A;  1RU4 A;  4Z03 A;  4XLA A;  2QXZ A;  3ZPP A;  1O8L A;  2NST A;  1O8D A;  3LMW A;  1EE6 A;  4OJP A;  5AMV A;  1HG8 A;  3ZSC A;  1VBL A;  4XKW A;  3EQN A;  2NT9 A;  2NSP A;  4YEJ A;  1OFL A;  2X6X A;  2VBM A;  2VBE A;  4OJO A;  2O04 A;  4W8Q A;  4W8S A;  2X6W A;  4XON A;  3WWG A;  1BN8 A;  2INV A;  1O8H A;  3GRH A;  3VSV A;  1IB4 A;  4XLE A;  2BSP A;  1JRG A;  1H80 A;  4XKV A;  4XM3 A;  3B90 A;  4XOR A;  2O0V A;  1OFM A;  2QX3 A;  3KRG A;  2O17 A;  4YZX A;  4XLF A;  4YZQ A;  1PLU A;  1IA5 A;  4XOT A;  4XLH A;  1PE9 A;  2VJI A;  1O8I A;  1IDK A;  1WMR A;  4OZZ A;  4OJ5 A;  1KCC A;  2O0W A;  4HWV A;  1K5C A;  2PYG A;  2QY1 A;  4YEL A;  4NK8 A;  1KTW A;  1GQ8 A;  1O8G A;  1QCX A;  4URR A;  4OJ6 A;  1O8J A;  2NTP A;  2INU A;  1X0C A;  2VBK A;  1DBG A;  4MXN A;  4AVZ A;  4C2L A;  1RWR A;  2NTQ A;  4XQF A;  2PEC A;  3GQA A;  2EWE A;  4NK6 A;  2IQ7 A;  2X85 A;  4W8R A;  1O8M A;  1OGO X;  2O1D A;  1KCD A;  1BHE A;  1QJV A;  5C1C A;  4XN0 A;  4XOP A;  1XG2 A;  2X6Y A;  3B8Y A;  1OGM X; 
#chains in the Genus database with same CATH topology
 1O8E A;  2NZM A;  2O6W A;  2XTX A;  5C1E A;  3SYJ A;  3VSU A;  1NHC A;  3EQO A;  1L1I A;  2G0Y A;  2ODL A;  2X3H A;  1OOC A;  3UW0 A;  1PXZ A;  1K8F A;  1K4Z A;  1IDJ A;  4OZY A;  4YZ0 A;  2VJJ A;  3PSS A;  3VMV A;  1TSP A;  3T9G A;  2VFM A;  3GQ8 A;  3PSZ A;  3TH0 A;  4Z05 A;  3B4N A;  4Z06 A;  3SUC A;  1O8F A;  2Z8G A;  3GQ7 A;  1DBO A;  3VMW A;  3VST A;  3SZE A;  3AK5 A;  4PMH A;  5JMC B;  2PYH A;  4KH3 A;  3JUR A;  3NB2 A;  1EA0 A;  1LM1 A;  4I84 A;  4XNF A;  4YDT A;  4OJL A;  4EW9 A;  4XR6 A;  4U49 A;  4XL9 A;  3SQV A;  1KQ5 A;  2V5I A;  1O8K A;  1O88 A;  3GQ9 A;  4YFO A;  3H09 A;  2NTB A;  3FY3 A;  4XLC A;  4U4B A;  4W8T A;  1TYU A;  4YZA A;  4MR0 A;  1CLW A;  3P4G A;  2UVE A;  1HF2 A;  4JRA C;  4XMY A;  1RMG A;  2XT2 A;  3LYC A;  2QZA A;  2UVF A;  3DU1 X;  2NT6 A;  4OPW A;  1QRB A;  1AIR A;  1JTA A;  4XN3 A;  1CZF A;  1RU4 A;  4Z03 A;  3RIQ A;  2XT4 A;  4XLA A;  2QXZ A;  3ZPP A;  5JLV C;  1O8L A;  4YC5 A;  2NST A;  2BX6 A;  1O8D A;  2F3L A;  1EE6 A;  2IOU G;  3LMW A;  1QRC A;  2BM4 A;  4OJP A;  1OFE A;  1TYX A;  5AMV A;  1HG8 A;  3ZSC A;  1VBL A;  4XKW A;  3EQN A;  2NT9 A;  2NSP A;  3N90 A;  4YEJ A;  1OFL A;  2X6X A;  2VBM A;  2VBE A;  4OJO A;  4YCQ A;  2O04 A;  4W8Q A;  4W8S A;  2X6W A;  1QA2 A;  4XON A;  1TYW A;  3WWG A;  1QA3 A;  1BN8 A;  2INV A;  1TYV A;  5DNS A;  1O8H A;  3GRH A;  3VSV A;  1IB4 A;  2J8I A;  2VFN A;  4XLE A;  1QA1 A;  2BSP A;  1JRG A;  1H80 A;  4XKV A;  4XM3 A;  2QYU A;  3B90 A;  4XOR A;  2O0V A;  1OFM A;  2VFQ A;  2QX3 A;  2XTW A;  3BH7 B;  3KRG A;  2O17 A;  2VFP A;  3JX8 A;  4YZX A;  4XLF A;  2XC1 A;  4YZQ A;  1PLU A;  2B0R A;  2YUH A;  3NAW A;  4XLH A;  4XOT A;  1IA5 A;  1WXR A;  1PE9 A;  2VJI A;  1LLW A;  1O8I A;  1IDK A;  1WMR A;  4OZZ A;  4OJ5 A;  4OM9 A;  4V02 C;  2O0W A;  4HWV A;  1K5C A;  2PYG A;  2QY1 A;  1KCC A;  4YEL A;  2W7Z A;  2BM5 A;  3SY2 A;  4NK8 A;  3BH6 B;  1KTW A;  1GQ8 A;  1O8G A;  1QCX A;  4URR A;  4OJ6 A;  2XTY A;  1O8J A;  2NTP A;  2INU A;  1X0C A;  2VBK A;  1DBG A;  4MXN A;  3N6Z A;  4AVZ A;  4C2L A;  1RWR A;  2NTQ A;  3ML3 A;  3PET A;  4XQF A;  1DAB A;  1EZG A;  1OFD A;  2PEC A;  3GQA A;  2EWE A;  4NK6 A;  2IQ7 A;  2BM7 A;  2J8K A;  2X85 A;  4W8R A;  1O8M A;  4YEI A;  1OGO X;  2O1D A;  1KCD A;  1BHE A;  3LJY A;  1QJV A;  2BM6 A;  2VFO A;  5C1C A;  4XN0 A;  1LLZ A;  4XOP A;  1QQ1 A;  1XG2 A;  2X6Y A;  3B8Y A;  1OGM X; 
#chains in the Genus database with same CATH homology
 1O8E A;  2NZM A;  5C1E A;  3VSU A;  1NHC A;  3EQO A;  2ODL A;  2X3H A;  1OOC A;  1PXZ A;  4YZ0 A;  1IDJ A;  4OZY A;  2VJJ A;  3VMV A;  3T9G A;  3GQ8 A;  4Z05 A;  3B4N A;  4Z06 A;  1O8F A;  2Z8G A;  3GQ7 A;  1DBO A;  3VMW A;  3VST A;  4PMH A;  2PYH A;  3JUR A;  4I84 A;  4EW9 A;  4XNF A;  4OJL A;  4XR6 A;  4U49 A;  4XL9 A;  1O8K A;  1O88 A;  3GQ9 A;  2NTB A;  3FY3 A;  4XLC A;  4U4B A;  4W8T A;  4YZA A;  4MR0 A;  2UVE A;  4XMY A;  1RMG A;  2UVF A;  3SUC A;  2NT6 A;  3UW0 A;  1AIR A;  1JTA A;  4XN3 A;  1CZF A;  1RU4 A;  4Z03 A;  4XLA A;  2QXZ A;  3ZPP A;  1O8L A;  2NST A;  1O8D A;  3LMW A;  1EE6 A;  4OJP A;  5AMV A;  1HG8 A;  3ZSC A;  1VBL A;  4XKW A;  3EQN A;  2NT9 A;  2NSP A;  4YEJ A;  1OFL A;  2X6X A;  2VBM A;  2VBE A;  4OJO A;  2O04 A;  4W8Q A;  4W8S A;  2X6W A;  4XON A;  3WWG A;  1BN8 A;  2INV A;  1O8H A;  3GRH A;  3VSV A;  1IB4 A;  4XLE A;  2BSP A;  1JRG A;  1H80 A;  4XKV A;  4XM3 A;  3B90 A;  4XOR A;  2O0V A;  1OFM A;  2QX3 A;  3KRG A;  2O17 A;  4YZX A;  4XLF A;  4YZQ A;  1PLU A;  1IA5 A;  4XOT A;  4XLH A;  1PE9 A;  2VJI A;  1O8I A;  1IDK A;  1WMR A;  4OZZ A;  4OJ5 A;  1KCC A;  2O0W A;  4HWV A;  1K5C A;  2PYG A;  2QY1 A;  4YEL A;  4NK8 A;  1KTW A;  1GQ8 A;  1O8G A;  1QCX A;  4URR A;  4OJ6 A;  1O8J A;  2NTP A;  2INU A;  1X0C A;  2VBK A;  1DBG A;  4MXN A;  4AVZ A;  4C2L A;  1RWR A;  2NTQ A;  4XQF A;  2PEC A;  3GQA A;  2EWE A;  4NK6 A;  2IQ7 A;  2X85 A;  4W8R A;  1O8M A;  1OGO X;  2O1D A;  1KCD A;  1BHE A;  1QJV A;  5C1C A;  4XN0 A;  4XOP A;  1XG2 A;  2X6Y A;  3B8Y A;  1OGM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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