2BM7A

The structure of mfpa (rv3361c, p3221 crystal form). the pentapeptide repeat protein from mycobacterium tuberculosis folds as a right- handed quadrilateral beta-helix.
Total Genus 77
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
178
structure length
178
Chain Sequence
QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords PENTAPEPTIDE REPEAT FAMILY PROTEIN
publication title A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Pentapeptide repeat protein
total genus 77
structure length 178
sequence length 178
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2bm7A00
2F3LA 2BM7A 2W7ZA 3N90A 2G0YA 2BM4A 4JRAC 5JLVC 2BM6A 2BM5A 5JMCB 2J8IA
chains in the Genus database with same CATH superfamily
2XTXA 3WWGA 2X6WA 1RU4A 1BHEA 2O17A 1HG8A 2J8IA 4OJPA 1O8HA 1DABA 1QQ1A 2PYHA 2W7ZA 3N6ZA 4OJ6A 1EA0A 2BM4A 4HWVA 5DNSA 4YFOA 3VMWA 1DBOA 1OFLA 4XR6A 3AK5A 3KRGA 2BM7A 1QA1A 4XL9A 4W8TA 3SQVA 1EZGA 1TYUA 1LM1A 2BM5A 2QXZA 4OJOA 3GQAA 1QCXA 2BSPA 1AIRA 2VBMA 3VMVA 4MR0A 4YDTA 4YZAA 2NTPA 1OGMX 2IOUG 4OJLA 4OM9A 1O8KA 2NT9A 2QYUA 1QA3A 3B4NA 3P4GA 1K8FA 3BH6B 2QZAA 1OGOX 3N90A 3SZEA 1IB4A 1TYWA 2XT2A 4YCQA 4XORA 2INUA 3LYCA 3GQ8A 3H09A 2VFQA 1NHCA 3JURA 1OFEA 2X6XA 1O8EA 3EQOA 3DU1X 3GQ9A 3PSSA 2XTWA 1RMGA 4MXNA 1CLWA 5AMVA 1K4ZA 4YZXA 1QJVA 4C2LA 3B8YA 2ODLA 2IQ7A 4XM3A 4YZ0A 2NTQA 4OPWA 4YELA 4XOPA 4URRA 1RWRA 3PETA 4W8QA 4W8SA 4NK6A 1IDKA 1OFMA 3EQNA 4OJ5A 5C1EA 1KCDA 2QY1A 4XONA 1O8GA 3TH0A 4XN0A 2UVEA 1XG2A 2XTYA 3BH7B 2UVFA 4XOTA 2BX6A 3VSUA 4XNFA 1JRGA 3GRHA 4XLEA 1HF2A 1O88A 4PMHA 4XMYA 4Z05A 2Z8GA 1GQ8A 1X0CA 2EWEA 4YEJA 4XKVA 1IA5A 3B90A 2PECA 2F3LA 2NZMA 2O1DA 4I84A 4W8RA 1QRCA 3LMWA 1O8LA 2G0YA 1O8DA 4AVZA 2VFOA 2BM6A 1KCCA 1DBGA 1O8IA 2XC1A 4XLCA 1WXRA 1JTAA 4YEIA 1QA2A 2VFNA 1TSPA 2X6YA 3SUCA 1PLUA 2VJIA 1VBLA 2O0VA 2O6WA 1QRBA 1BN8A 4Z06A 3SYJA 4V02C 2PYGA 4YZQA 3LJYA 3NAWA 1O8JA 1TYVA 4KH3A 3NB2A 1TYXA 2NSPA 1KTWA 2O04A 3FY3A 4Z03A 2VBEA 3ZPPA 5JLVC 2J8KA 3T9GA 3JX8A 4XN3A 3UW0A 4XLFA 1H80A 2XT4A 4U4BA 3GQ7A 3VSTA 1LLWA 1EE6A 2V5IA 2NTBA 2VBKA 4JRAC 5JMCB 1IDJA 4OZZA 1OOCA 1LLZA 2NT6A 1O8MA 2O0WA 3ZSCA 2VFPA 3RIQA 1O8FA 1PE9A 1WMRA 2VJJA 4EW9A 1OFDA 1KQ5A 2INVA 4NK8A 4XLAA 4XKWA 1K5CA 3ML3A 2X3HA 2B0RA 4XLHA 2YUHA 4OZYA 3PSZA 3VSVA 5C1CA 2X85A 2QX3A 4YC5A 1L1IA 1PXZA 4U49A 1CZFA 3SY2A 2NSTA 4XQFA 2VFMA
chains in the Genus database with same CATH topology
1K8FA 3BH6B 3LJYA 1TYVA 4KH3A 3N90A 3SZEA 1TYXA 4OJ5A 1TYWA 5JLVC 4OJPA 2J8IA 3JX8A 3LYCA 3TH0A 1QQ1A 1DABA 3BH7B 2BX6A 2W7ZA 3H09A 3N6ZA 4OJ6A 2VFQA 1HF2A 2V5IA 2BM4A 4JRAC 5JMCB 2F3LA 3AK5A 2BM7A 1CLWA 2VFPA 1QRCA 3RIQA 1QA1A 2G0YA 1K4ZA 1KQ5A 2VFOA 2BM6A 1TYUA 2BM5A 2XC1A 4OJOA 3ML3A 1WXRA 2B0RA 2YUHA 1QA2A 2VFNA 1TSPA 4OPWA 2IOUG 1QRBA 3PETA 4OJLA 4OM9A 3SYJA 4V02C 1QA3A 2VFMA 3P4GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F3L A;  2BM7 A;  2W7Z A;  3N90 A;  2G0Y A;  2BM4 A;  4JRA C;  5JLV C;  2BM6 A;  2BM5 A;  5JMC B;  2J8I A; 
#chains in the Genus database with same CATH topology
 2XTX A;  3WWG A;  2X6W A;  1RU4 A;  1BHE A;  2O17 A;  1HG8 A;  2J8I A;  4OJP A;  1O8H A;  1DAB A;  1QQ1 A;  2PYH A;  2W7Z A;  3N6Z A;  4OJ6 A;  1EA0 A;  2BM4 A;  4HWV A;  5DNS A;  4YFO A;  3VMW A;  1DBO A;  1OFL A;  4XR6 A;  3AK5 A;  3KRG A;  2BM7 A;  1QA1 A;  4XL9 A;  4W8T A;  3SQV A;  1EZG A;  1TYU A;  1LM1 A;  2BM5 A;  2QXZ A;  4OJO A;  3GQA A;  1QCX A;  2BSP A;  1AIR A;  2VBM A;  3VMV A;  4MR0 A;  4YDT A;  4YZA A;  2NTP A;  1OGM X;  2IOU G;  4OJL A;  4OM9 A;  1O8K A;  2NT9 A;  2QYU A;  1QA3 A;  3B4N A;  3P4G A;  1K8F A;  3BH6 B;  2QZA A;  1OGO X;  3N90 A;  3SZE A;  1IB4 A;  1TYW A;  2XT2 A;  4YCQ A;  4XOR A;  2INU A;  3LYC A;  3GQ8 A;  3H09 A;  2VFQ A;  1NHC A;  3JUR A;  1OFE A;  2X6X A;  1O8E A;  3EQO A;  3DU1 X;  3GQ9 A;  3PSS A;  2XTW A;  1RMG A;  4MXN A;  1CLW A;  5AMV A;  1K4Z A;  4YZX A;  1QJV A;  4C2L A;  3B8Y A;  2ODL A;  2IQ7 A;  4XM3 A;  4YZ0 A;  2NTQ A;  4OPW A;  4YEL A;  4XOP A;  4URR A;  1RWR A;  3PET A;  4W8Q A;  4W8S A;  4NK6 A;  1IDK A;  1OFM A;  3EQN A;  4OJ5 A;  5C1E A;  1KCD A;  2QY1 A;  4XON A;  1O8G A;  3TH0 A;  4XN0 A;  2UVE A;  1XG2 A;  2XTY A;  3BH7 B;  2UVF A;  4XOT A;  2BX6 A;  3VSU A;  4XNF A;  1JRG A;  3GRH A;  4XLE A;  1HF2 A;  1O88 A;  4PMH A;  4XMY A;  4Z05 A;  2Z8G A;  1GQ8 A;  1X0C A;  2EWE A;  4YEJ A;  4XKV A;  1IA5 A;  3B90 A;  2PEC A;  2F3L A;  2NZM A;  2O1D A;  4I84 A;  4W8R A;  1QRC A;  3LMW A;  1O8L A;  2G0Y A;  1O8D A;  4AVZ A;  2VFO A;  2BM6 A;  1KCC A;  1DBG A;  1O8I A;  2XC1 A;  4XLC A;  1WXR A;  1JTA A;  4YEI A;  1QA2 A;  2VFN A;  1TSP A;  2X6Y A;  3SUC A;  1PLU A;  2VJI A;  1VBL A;  2O0V A;  2O6W A;  1QRB A;  1BN8 A;  4Z06 A;  3SYJ A;  4V02 C;  2PYG A;  4YZQ A;  3LJY A;  3NAW A;  1O8J A;  1TYV A;  4KH3 A;  3NB2 A;  1TYX A;  2NSP A;  1KTW A;  2O04 A;  3FY3 A;  4Z03 A;  2VBE A;  3ZPP A;  5JLV C;  2J8K A;  3T9G A;  3JX8 A;  4XN3 A;  3UW0 A;  4XLF A;  1H80 A;  2XT4 A;  4U4B A;  3GQ7 A;  3VST A;  1LLW A;  1EE6 A;  2V5I A;  2NTB A;  2VBK A;  4JRA C;  5JMC B;  1IDJ A;  4OZZ A;  1OOC A;  1LLZ A;  2NT6 A;  1O8M A;  2O0W A;  3ZSC A;  2VFP A;  3RIQ A;  1O8F A;  1PE9 A;  1WMR A;  2VJJ A;  4EW9 A;  1OFD A;  1KQ5 A;  2INV A;  4NK8 A;  4XLA A;  4XKW A;  1K5C A;  3ML3 A;  2X3H A;  2B0R A;  4XLH A;  2YUH A;  4OZY A;  3PSZ A;  3VSV A;  5C1C A;  2X85 A;  2QX3 A;  4YC5 A;  1L1I A;  1PXZ A;  4U49 A;  1CZF A;  3SY2 A;  2NST A;  4XQF A;  2VFM A; 
#chains in the Genus database with same CATH homology
 1K8F A;  3BH6 B;  3LJY A;  1TYV A;  4KH3 A;  3N90 A;  3SZE A;  1TYX A;  4OJ5 A;  1TYW A;  5JLV C;  4OJP A;  2J8I A;  3JX8 A;  3LYC A;  3TH0 A;  1QQ1 A;  1DAB A;  3BH7 B;  2BX6 A;  2W7Z A;  3H09 A;  3N6Z A;  4OJ6 A;  2VFQ A;  1HF2 A;  2V5I A;  2BM4 A;  4JRA C;  5JMC B;  2F3L A;  3AK5 A;  2BM7 A;  1CLW A;  2VFP A;  1QRC A;  3RIQ A;  1QA1 A;  2G0Y A;  1K4Z A;  1KQ5 A;  2VFO A;  2BM6 A;  1TYU A;  2BM5 A;  2XC1 A;  4OJO A;  3ML3 A;  1WXR A;  2B0R A;  2YUH A;  1QA2 A;  2VFN A;  1TSP A;  4OPW A;  2IOU G;  1QRB A;  3PET A;  4OJL A;  4OM9 A;  3SYJ A;  4V02 C;  1QA3 A;  2VFM A;  3P4G A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...