2BM7A

The structure of mfpa (rv3361c, p3221 crystal form). the pentapeptide repeat protein from mycobacterium tuberculosis folds as a right- handed quadrilateral beta-helix.
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
178
structure length
178
Chain Sequence
QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Pentapeptide repeat protein
source organism Mycobacterium tuberculosis
publication title A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA
pubmed doi rcsb
molecule keywords PENTAPEPTIDE REPEAT FAMILY PROTEIN
total genus 77
structure length 178
sequence length 178
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2bm7A00
4JRAC 2G0YA 5JLVC 2BM4A 2J8IA 2BM5A 3N90A 2W7ZA 2BM7A 5JMCB 2F3LA 2BM6A
chains in the Genus database with same CATH superfamily
3LMWA 2O04A 3TH0A 2G0YA 3BH7B 1H80A 3DU1X 2XT4A 3ML3A 1LLWA 2VJJA 3GRHA 2QY1A 4U49A 1DABA 1OFDA 1IDKA 2VFOA 2UVEA 2EWEA 2QX3A 3EQNA 1OFLA 4HWVA 1O8HA 1JTAA 4EW9A 1K8FA 2O0WA 3P4GA 2VBMA 4YEJA 2PYHA 3GQAA 1BHEA 2J8IA 2XTYA 4Z03A 2BSPA 1OGMX 2VFMA 1EA0A 3H09A 1O8DA 1TSPA 3LYCA 4OPWA 4XM3A 2F3LA 5C1EA 3N6ZA 1RU4A 2NTBA 4NK8A 2Z8GA 4XONA 3BH6B 4AVZA 4W8TA 1RMGA 2V5IA 4XLEA 3ZSCA 4W8QA 4YZ0A 4OJPA 4C2LA 2NT6A 2QYUA 4OZYA 3GQ7A 3PETA 4OJ5A 4W8SA 3N90A 2VJIA 3GQ9A 1L1IA 1KQ5A 2NSTA 4YZXA 1O8FA 3RIQA 4XOPA 1TYVA 2UVFA 1TYUA 3VMWA 2X6XA 3SUCA 4OJOA 1O88A 1X0CA 1WXRA 1TYXA 2QZAA 4URRA 1DBOA 4XL9A 1O8LA 4NK6A 4XLAA 1QA1A 4XQFA 1BN8A 1O8MA 4PMHA 1EZGA 5JLVC 2QXZA 2YUHA 4XKVA 1O8EA 1IDJA 1VBLA 3SYJA 4Z06A 1QJVA 5JMCB 1K5CA 4YELA 3KRGA 1WMRA 2BM5A 4YC5A 2PYGA 2VBEA 4XMYA 3FY3A 4W8RA 1CLWA 3VSVA 4MR0A 2BX6A 4V02C 2BM7A 4JRAC 1OOCA 3JURA 4YZAA 4YEIA 2XTXA 2O0VA 2W7ZA 4OZZA 4OM9A 2NSPA 1O8GA 3AK5A 2INUA 1O8IA 4XN3A 3T9GA 2O1DA 2IQ7A 1PXZA 2X3HA 4XN0A 1O8KA 1QQ1A 2VFNA 1QRCA 4YZQA 1OFMA 3SQVA 3NAWA 2NTQA 4XLHA 3UW0A 3VSUA 5C1CA 4MXNA 1CZFA 4YCQA 2IOUG 2NTPA 1QRBA 2VFPA 2VFQA 5AMVA 1IA5A 1KCCA 1QA3A 1PLUA 1TYWA 2ODLA 3B90A 2O6WA 1KTWA 3JX8A 1K4ZA 1PE9A 1XG2A 2PECA 3NB2A 4KH3A 3SY2A 2X85A 2J8KA 1IB4A 3VMVA 2BM6A 2XC1A 1OFEA 1LM1A 4U4BA 4YFOA 2X6WA 3B4NA 1NHCA 4XR6A 4OJLA 4YDTA 1GQ8A 3EQOA 1HF2A 2NT9A 2NZMA 2INVA 2VBKA 3PSSA 1KCDA 3VSTA 3WWGA 1OGOX 2XT2A 4XNFA 2BM4A 4XLCA 2B0RA 4XORA 1O8JA 4Z05A 3LJYA 1HG8A 3SZEA 4XKWA 1QA2A 1JRGA 4I84A 3GQ8A 1QCXA 1RWRA 2XTWA 1LLZA 3PSZA 4OJ6A 1DBGA 3B8YA 1AIRA 4XLFA 5DNSA 2X6YA 1EE6A 2O17A 4XOTA 3ZPPA
chains in the Genus database with same CATH topology
4JRAC 3TH0A 2G0YA 3BH7B 3JX8A 3PETA 4OJ5A 1K4ZA 3ML3A 3N90A 1QA3A 1KQ5A 4KH3A 1DABA 2W7ZA 3RIQA 1TYVA 2VFOA 1TYUA 4OM9A 2BM6A 2XC1A 4OJOA 3AK5A 1WXRA 1TYXA 4V02C 4OJLA 1K8FA 3P4GA 1HF2A 1QA1A 4OJPA 1QQ1A 5JLVC 2BM4A 2J8IA 1QRCA 2B0RA 2VFMA 2VFNA 2YUHA 3SYJA 3LJYA 3SZEA 3H09A 4OPWA 1TSPA 3LYCA 1QA2A 5JMCB 2F3LA 4OJ6A 3N6ZA 2IOUG 1TYWA 1QRBA 2BM5A 2VFQA 2VFPA 2V5IA 3BH6B 1CLWA 2BX6A 2BM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JRA C;  2G0Y A;  5JLV C;  2BM4 A;  2J8I A;  2BM5 A;  3N90 A;  2W7Z A;  2BM7 A;  5JMC B;  2F3L A;  2BM6 A; 
#chains in the Genus database with same CATH topology
 3LMW A;  2O04 A;  3TH0 A;  2G0Y A;  3BH7 B;  1H80 A;  3DU1 X;  2XT4 A;  3ML3 A;  1LLW A;  2VJJ A;  3GRH A;  2QY1 A;  4U49 A;  1DAB A;  1OFD A;  1IDK A;  2VFO A;  2UVE A;  2EWE A;  2QX3 A;  3EQN A;  1OFL A;  4HWV A;  1O8H A;  1JTA A;  4EW9 A;  1K8F A;  2O0W A;  3P4G A;  2VBM A;  4YEJ A;  2PYH A;  3GQA A;  1BHE A;  2J8I A;  2XTY A;  4Z03 A;  2BSP A;  1OGM X;  2VFM A;  1EA0 A;  3H09 A;  1O8D A;  1TSP A;  3LYC A;  4OPW A;  4XM3 A;  2F3L A;  5C1E A;  3N6Z A;  1RU4 A;  2NTB A;  4NK8 A;  2Z8G A;  4XON A;  3BH6 B;  4AVZ A;  4W8T A;  1RMG A;  2V5I A;  4XLE A;  3ZSC A;  4W8Q A;  4YZ0 A;  4OJP A;  4C2L A;  2NT6 A;  2QYU A;  4OZY A;  3GQ7 A;  3PET A;  4OJ5 A;  4W8S A;  3N90 A;  2VJI A;  3GQ9 A;  1L1I A;  1KQ5 A;  2NST A;  4YZX A;  1O8F A;  3RIQ A;  4XOP A;  1TYV A;  2UVF A;  1TYU A;  3VMW A;  2X6X A;  3SUC A;  4OJO A;  1O88 A;  1X0C A;  1WXR A;  1TYX A;  2QZA A;  4URR A;  1DBO A;  4XL9 A;  1O8L A;  4NK6 A;  4XLA A;  1QA1 A;  4XQF A;  1BN8 A;  1O8M A;  4PMH A;  1EZG A;  5JLV C;  2QXZ A;  2YUH A;  4XKV A;  1O8E A;  1IDJ A;  1VBL A;  3SYJ A;  4Z06 A;  1QJV A;  5JMC B;  1K5C A;  4YEL A;  3KRG A;  1WMR A;  2BM5 A;  4YC5 A;  2PYG A;  2VBE A;  4XMY A;  3FY3 A;  4W8R A;  1CLW A;  3VSV A;  4MR0 A;  2BX6 A;  4V02 C;  2BM7 A;  4JRA C;  1OOC A;  3JUR A;  4YZA A;  4YEI A;  2XTX A;  2O0V A;  2W7Z A;  4OZZ A;  4OM9 A;  2NSP A;  1O8G A;  3AK5 A;  2INU A;  1O8I A;  4XN3 A;  3T9G A;  2O1D A;  2IQ7 A;  1PXZ A;  2X3H A;  4XN0 A;  1O8K A;  1QQ1 A;  2VFN A;  1QRC A;  4YZQ A;  1OFM A;  3SQV A;  3NAW A;  2NTQ A;  4XLH A;  3UW0 A;  3VSU A;  5C1C A;  4MXN A;  1CZF A;  4YCQ A;  2IOU G;  2NTP A;  1QRB A;  2VFP A;  2VFQ A;  5AMV A;  1IA5 A;  1KCC A;  1QA3 A;  1PLU A;  1TYW A;  2ODL A;  3B90 A;  2O6W A;  1KTW A;  3JX8 A;  1K4Z A;  1PE9 A;  1XG2 A;  2PEC A;  3NB2 A;  4KH3 A;  3SY2 A;  2X85 A;  2J8K A;  1IB4 A;  3VMV A;  2BM6 A;  2XC1 A;  1OFE A;  1LM1 A;  4U4B A;  4YFO A;  2X6W A;  3B4N A;  1NHC A;  4XR6 A;  4OJL A;  4YDT A;  1GQ8 A;  3EQO A;  1HF2 A;  2NT9 A;  2NZM A;  2INV A;  2VBK A;  3PSS A;  1KCD A;  3VST A;  3WWG A;  1OGO X;  2XT2 A;  4XNF A;  2BM4 A;  4XLC A;  2B0R A;  4XOR A;  1O8J A;  4Z05 A;  3LJY A;  1HG8 A;  3SZE A;  4XKW A;  1QA2 A;  1JRG A;  4I84 A;  3GQ8 A;  1QCX A;  1RWR A;  2XTW A;  1LLZ A;  3PSZ A;  4OJ6 A;  1DBG A;  3B8Y A;  1AIR A;  4XLF A;  5DNS A;  2X6Y A;  1EE6 A;  2O17 A;  4XOT A;  3ZPP A; 
#chains in the Genus database with same CATH homology
 4JRA C;  3TH0 A;  2G0Y A;  3BH7 B;  3JX8 A;  3PET A;  4OJ5 A;  1K4Z A;  3ML3 A;  3N90 A;  1QA3 A;  1KQ5 A;  4KH3 A;  1DAB A;  2W7Z A;  3RIQ A;  1TYV A;  2VFO A;  1TYU A;  4OM9 A;  2BM6 A;  2XC1 A;  4OJO A;  3AK5 A;  1WXR A;  1TYX A;  4V02 C;  4OJL A;  1K8F A;  3P4G A;  1HF2 A;  1QA1 A;  4OJP A;  1QQ1 A;  5JLV C;  2BM4 A;  2J8I A;  1QRC A;  2B0R A;  2VFM A;  2VFN A;  2YUH A;  3SYJ A;  3LJY A;  3SZE A;  3H09 A;  4OPW A;  1TSP A;  3LYC A;  1QA2 A;  5JMC B;  2F3L A;  4OJ6 A;  3N6Z A;  2IOU G;  1TYW A;  1QRB A;  2BM5 A;  2VFQ A;  2VFP A;  2V5I A;  3BH6 B;  1CLW A;  2BX6 A;  2BM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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