2VFNA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125a
Total Genus 200
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSAKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
total genus 200
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfnA00
1TSPA 3AK5A 3TH0A 1QA3A 1TYWA 1QRCA 1DABA 1QRBA 2VFQA 4KH3A 2VFMA 3RIQA 2VFPA 3ML3A 3SYJA 1CLWA 2XC1A 3SZEA 2V5IA 1QQ1A 4OM9A 3H09A 1TYVA 2IOUG 1QA2A 1TYUA 2VFNA 1WXRA 1QA1A 2VFOA 1TYXA
chains in the Genus database with same CATH superfamily
1OFEA 2QYUA 2O6WA 1PXZA 2XT4A 2PYGA 4OJLA 2YUHA 5JMCB 1QA3A 2NTBA 1QRCA 4C2LA 3SUCA 4XQFA 3DU1X 4OZYA 1QRBA 2X6WA 2VFQA 2W7ZA 4XONA 4I84A 2VFPA 4XNFA 3RIQA 1IB4A 1L1IA 2BM4A 2XT2A 4OJ5A 3B8YA 1HF2A 4NK8A 4Z03A 2VBEA 1DBOA 3T9GA 4XORA 2XTWA 1OFMA 4YFOA 1O8FA 1BHEA 1K5CA 3H09A 4XLCA 4XR6A 1EA0A 4XMYA 1O8LA 1PLUA 3JX8A 2VJJA 1IA5A 4V02C 1QCXA 3VSTA 5DNSA 4URRA 4XLAA 1EZGA 1XG2A 1QA1A 3VSVA 5AMVA 1JTAA 1OFDA 1O8KA 2QXZA 1O8IA 2X6XA 4XM3A 4XN0A 4YCQA 1TSPA 3AK5A 3BH7B 4OJPA 4XKWA 1KCCA 1EE6A 2O0VA 3NAWA 3N90A 4PMHA 3LYCA 1O8DA 3NB2A 2INVA 4MR0A 4AVZA 3EQOA 2UVFA 1IDKA 3WWGA 4JRAC 4YEJA 4XL9A 1RMGA 1X0CA 4YEIA 4W8SA 3SYJA 2BX6A 4HWVA 2QX3A 1CLWA 1K4ZA 4XLFA 2XC1A 1O8HA 3EQNA 3P4GA 4U49A 2X6YA 4YZAA 2Z8GA 4YZXA 1RU4A 3VMVA 1IDJA 4OM9A 3SZEA 1O8JA 1VBLA 2IQ7A 2G0YA 4XN3A 1BN8A 1TYUA 1RWRA 1H80A 3ZPPA 3VSUA 2QZAA 1LLZA 2VFOA 3UW0A 2NT6A 1KQ5A 1KTWA 2BM6A 2J8IA 1LM1A 2VJIA 3B4NA 1NHCA 2PECA 1OFLA 2X3HA 4U4BA 1HG8A 2X85A 2ODLA 4EW9A 4XLEA 2O1DA 1CZFA 2VFMA 2INUA 4W8RA 3VMWA 2XTXA 2QY1A 4W8TA 1OGMX 4YELA 3PETA 1AIRA 4NK6A 4OPWA 2B0RA 2NTPA 2V5IA 3N6ZA 2NSTA 2EWEA 3KRGA 3GQAA 1TYVA 4YC5A 1O88A 3FY3A 3GRHA 1QA2A 5C1EA 3B90A 2O04A 2NT9A 4XOPA 4Z05A 2NSPA 2BSPA 2VFNA 4MXNA 2NZMA 4YDTA 2VBMA 4YZQA 5C1CA 2UVEA 3GQ8A 2J8KA 3TH0A 3LJYA 2XTYA 4W8QA 1O8EA 1O8GA 2O0WA 1TYWA 1GQ8A 1QJVA 1DABA 1OOCA 1WMRA 2BM5A 1DBGA 3JURA 4KH3A 4XKVA 4YZ0A 3GQ7A 4OJ6A 3ML3A 3PSSA 3SQVA 1LLWA 1O8MA 2F3LA 3GQ9A 5JLVC 2BM7A 1KCDA 1PE9A 1QQ1A 2O17A 3LMWA 4OJOA 4XLHA 2IOUG 4Z06A 1K8FA 3SY2A 3ZSCA 2NTQA 1JRGA 1WXRA 4XOTA 2VBKA 3PSZA 4OZZA 3BH6B 1TYXA 2PYHA 1OGOX
chains in the Genus database with same CATH topology
1KQ5A 2BM6A 2J8IA 1TSPA 3AK5A 3TH0A 3LJYA 3BH7B 4OJPA 2YUHA 4OJLA 5JMCB 1QA3A 3N90A 1TYWA 3LYCA 1QRCA 1DABA 1QRBA 2BM5A 2VFQA 2W7ZA 2VFMA 4KH3A 2VFPA 3RIQA 4OJ6A 4JRAC 2BM4A 3ML3A 4OJ5A 1HF2A 2F3LA 3PETA 4OPWA 2BX6A 3SYJA 2B0RA 5JLVC 1CLWA 1K4ZA 2XC1A 3P4GA 3SZEA 2V5IA 2BM7A 3N6ZA 1QQ1A 4OM9A 3H09A 4OJOA 1TYVA 2IOUG 1QA2A 1K8FA 2G0YA 3JX8A 1TYUA 4V02C 2VFNA 1WXRA 1QA1A 3BH6B 2VFOA 1TYXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TSP A;  3AK5 A;  3TH0 A;  1QA3 A;  1TYW A;  1QRC A;  1DAB A;  1QRB A;  2VFQ A;  4KH3 A;  2VFM A;  3RIQ A;  2VFP A;  3ML3 A;  3SYJ A;  1CLW A;  2XC1 A;  3SZE A;  2V5I A;  1QQ1 A;  4OM9 A;  3H09 A;  1TYV A;  2IOU G;  1QA2 A;  1TYU A;  2VFN A;  1WXR A;  1QA1 A;  2VFO A;  1TYX A; 
#chains in the Genus database with same CATH topology
 1OFE A;  2QYU A;  2O6W A;  1PXZ A;  2XT4 A;  2PYG A;  4OJL A;  2YUH A;  5JMC B;  1QA3 A;  2NTB A;  1QRC A;  4C2L A;  3SUC A;  4XQF A;  3DU1 X;  4OZY A;  1QRB A;  2X6W A;  2VFQ A;  2W7Z A;  4XON A;  4I84 A;  2VFP A;  4XNF A;  3RIQ A;  1IB4 A;  1L1I A;  2BM4 A;  2XT2 A;  4OJ5 A;  3B8Y A;  1HF2 A;  4NK8 A;  4Z03 A;  2VBE A;  1DBO A;  3T9G A;  4XOR A;  2XTW A;  1OFM A;  4YFO A;  1O8F A;  1BHE A;  1K5C A;  3H09 A;  4XLC A;  4XR6 A;  1EA0 A;  4XMY A;  1O8L A;  1PLU A;  3JX8 A;  2VJJ A;  1IA5 A;  4V02 C;  1QCX A;  3VST A;  5DNS A;  4URR A;  4XLA A;  1EZG A;  1XG2 A;  1QA1 A;  3VSV A;  5AMV A;  1JTA A;  1OFD A;  1O8K A;  2QXZ A;  1O8I A;  2X6X A;  4XM3 A;  4XN0 A;  4YCQ A;  1TSP A;  3AK5 A;  3BH7 B;  4OJP A;  4XKW A;  1KCC A;  1EE6 A;  2O0V A;  3NAW A;  3N90 A;  4PMH A;  3LYC A;  1O8D A;  3NB2 A;  2INV A;  4MR0 A;  4AVZ A;  3EQO A;  2UVF A;  1IDK A;  3WWG A;  4JRA C;  4YEJ A;  4XL9 A;  1RMG A;  1X0C A;  4YEI A;  4W8S A;  3SYJ A;  2BX6 A;  4HWV A;  2QX3 A;  1CLW A;  1K4Z A;  4XLF A;  2XC1 A;  1O8H A;  3EQN A;  3P4G A;  4U49 A;  2X6Y A;  4YZA A;  2Z8G A;  4YZX A;  1RU4 A;  3VMV A;  1IDJ A;  4OM9 A;  3SZE A;  1O8J A;  1VBL A;  2IQ7 A;  2G0Y A;  4XN3 A;  1BN8 A;  1TYU A;  1RWR A;  1H80 A;  3ZPP A;  3VSU A;  2QZA A;  1LLZ A;  2VFO A;  3UW0 A;  2NT6 A;  1KQ5 A;  1KTW A;  2BM6 A;  2J8I A;  1LM1 A;  2VJI A;  3B4N A;  1NHC A;  2PEC A;  1OFL A;  2X3H A;  4U4B A;  1HG8 A;  2X85 A;  2ODL A;  4EW9 A;  4XLE A;  2O1D A;  1CZF A;  2VFM A;  2INU A;  4W8R A;  3VMW A;  2XTX A;  2QY1 A;  4W8T A;  1OGM X;  4YEL A;  3PET A;  1AIR A;  4NK6 A;  4OPW A;  2B0R A;  2NTP A;  2V5I A;  3N6Z A;  2NST A;  2EWE A;  3KRG A;  3GQA A;  1TYV A;  4YC5 A;  1O88 A;  3FY3 A;  3GRH A;  1QA2 A;  5C1E A;  3B90 A;  2O04 A;  2NT9 A;  4XOP A;  4Z05 A;  2NSP A;  2BSP A;  2VFN A;  4MXN A;  2NZM A;  4YDT A;  2VBM A;  4YZQ A;  5C1C A;  2UVE A;  3GQ8 A;  2J8K A;  3TH0 A;  3LJY A;  2XTY A;  4W8Q A;  1O8E A;  1O8G A;  2O0W A;  1TYW A;  1GQ8 A;  1QJV A;  1DAB A;  1OOC A;  1WMR A;  2BM5 A;  1DBG A;  3JUR A;  4KH3 A;  4XKV A;  4YZ0 A;  3GQ7 A;  4OJ6 A;  3ML3 A;  3PSS A;  3SQV A;  1LLW A;  1O8M A;  2F3L A;  3GQ9 A;  5JLV C;  2BM7 A;  1KCD A;  1PE9 A;  1QQ1 A;  2O17 A;  3LMW A;  4OJO A;  4XLH A;  2IOU G;  4Z06 A;  1K8F A;  3SY2 A;  3ZSC A;  2NTQ A;  1JRG A;  1WXR A;  4XOT A;  2VBK A;  3PSZ A;  4OZZ A;  3BH6 B;  1TYX A;  2PYH A;  1OGO X; 
#chains in the Genus database with same CATH homology
 1KQ5 A;  2BM6 A;  2J8I A;  1TSP A;  3AK5 A;  3TH0 A;  3LJY A;  3BH7 B;  4OJP A;  2YUH A;  4OJL A;  5JMC B;  1QA3 A;  3N90 A;  1TYW A;  3LYC A;  1QRC A;  1DAB A;  1QRB A;  2BM5 A;  2VFQ A;  2W7Z A;  2VFM A;  4KH3 A;  2VFP A;  3RIQ A;  4OJ6 A;  4JRA C;  2BM4 A;  3ML3 A;  4OJ5 A;  1HF2 A;  2F3L A;  3PET A;  4OPW A;  2BX6 A;  3SYJ A;  2B0R A;  5JLV C;  1CLW A;  1K4Z A;  2XC1 A;  3P4G A;  3SZE A;  2V5I A;  2BM7 A;  3N6Z A;  1QQ1 A;  4OM9 A;  3H09 A;  4OJO A;  1TYV A;  2IOU G;  1QA2 A;  1K8F A;  2G0Y A;  3JX8 A;  1TYU A;  4V02 C;  2VFN A;  1WXR A;  1QA1 A;  3BH6 B;  2VFO A;  1TYX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...