2VFNA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125a
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
555
structure length
555
Chain Sequence
b'QYSIEADKKFKYSAKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 200
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfnA00
3TH0A 1QRBA 1TSPA 1TYUA 4OM9A 1QA1A 2VFMA 1QA3A 3SZEA 2IOUG 2VFNA 2V5IA 2VFOA 1TYWA 1DABA 1QRCA 3ML3A 3RIQA 1QQ1A 1QA2A 3SYJA 2VFQA 1WXRA 1TYVA 1CLWA 1TYXA 3AK5A 2VFPA 2XC1A 4KH3A 3H09A
chains in the Genus database with same CATH superfamily
5JMCB 3ZPPA 2BM5A 3TH0A 5AMVA 4XL9A 3P4GA 2W7ZA 1QRBA 1LM1A 4XNFA 4YZQA 1VBLA 4OPWA 5C1EA 3VMWA 2B0RA 3BH7B 1HF2A 1X0CA 1OOCA 4XN3A 2V5IA 2VFOA 4OJ6A 4Z06A 2O04A 2XTWA 1GQ8A 4JRAC 2UVEA 1K8FA 4XLCA 2PYHA 3SUCA 1DABA 3T9GA 2X3HA 1WMRA 1KCDA 3N6ZA 1HG8A 1QA2A 3B90A 2NTQA 1OGMX 3LJYA 3SQVA 1WXRA 4HWVA 3GQ8A 3GQ7A 4U4BA 4XORA 4XKWA 4OJLA 4EW9A 2O1DA 2XTYA 4XLEA 3WWGA 2J8IA 4NK6A 4C2LA 3H09A 3B8YA 3VSUA 4W8RA 2BM4A 2QX3A 1L1IA 2J8KA 2NT9A 1EA0A 2BM6A 2F3LA 2NT6A 2XT4A 3EQOA 4MXNA 2VFMA 1BN8A 1O8EA 3DU1X 1BHEA 3B4NA 1PXZA 3PETA 3UW0A 2IQ7A 1OFEA 1O8LA 4AVZA 4OJPA 1IDJA 1RWRA 4MR0A 2INUA 1QRCA 3NB2A 3LYCA 3N90A 4YZAA 4XLAA 4URRA 4Z03A 3VSTA 2NZMA 1O8HA 4OJOA 1CLWA 2NTBA 1O8MA 1O88A 4V02C 1NHCA 3AK5A 4YFOA 1JRGA 4XR6A 4YZ0A 1KQ5A 2YUHA 3VSVA 2VFPA 4Z05A 4YZXA 2O0WA 2NTPA 2XC1A 3FY3A 3GQ9A 4YC5A 3PSSA 2VBEA 2UVFA 2XT2A 4YEJA 1TSPA 2O0VA 1O8DA 4XOPA 3SZEA 1DBOA 3JX8A 1QA3A 1K4ZA 1OGOX 2IOUG 1IDKA 1QJVA 1XG2A 4U49A 4XLFA 1EE6A 1EZGA 4XN0A 4YEIA 2X6XA 1TYWA 4OZYA 3BH6B 4YELA 2INVA 1DBGA 4XM3A 3ML3A 2QZAA 3RIQA 1QQ1A 1O8IA 3GRHA 1AIRA 2NSPA 2PECA 2Z8GA 4OJ5A 3SYJA 2VJIA 1RMGA 4I84A 3SY2A 1LLZA 2VBKA 1JTAA 2QXZA 4YCQA 3ZSCA 4XLHA 1PLUA 4OZZA 4W8SA 2BX6A 3KRGA 1O8JA 5JLVC 1O8GA 1RU4A 1QCXA 2BM7A 4KH3A 4XQFA 2VBMA 4XKVA 4W8TA 1IB4A 3LMWA 2BSPA 4W8QA 1KCCA 1KTWA 3PSZA 1O8FA 1TYUA 3JURA 4OM9A 1QA1A 1PE9A 2QY1A 2VFNA 3NAWA 1CZFA 4PMHA 4XONA 1OFDA 2O6WA 1OFMA 1OFLA 2X6WA 4NK8A 3GQAA 3VMVA 1O8KA 2NSTA 2G0YA 2PYGA 4XOTA 3EQNA 5C1CA 2VFQA 1H80A 1TYVA 2EWEA 1LLWA 1TYXA 2QYUA 5DNSA 1K5CA 2O17A 4XMYA 4YDTA 2VJJA 2ODLA 1IA5A 2XTXA 2X6YA 2X85A
chains in the Genus database with same CATH topology
5JMCB 2BM5A 3TH0A 2BM4A 3P4GA 2W7ZA 1QRBA 4OPWA 2BM6A 2F3LA 2B0RA 1TSPA 1TYUA 4OM9A 1QA1A 2VFMA 3BH7B 1QA3A 1HF2A 3SZEA 3JX8A 1K4ZA 2IOUG 2VFNA 2V5IA 2VFOA 3PETA 4OJ6A 4OJPA 1TYWA 3BH6B 4JRAC 1K8FA 1QRCA 1DABA 3LYCA 3N90A 3ML3A 3RIQA 3N6ZA 1QQ1A 4KH3A 1QA2A 2G0YA 4OJ5A 3LJYA 4OJOA 2VFQA 3SYJA 1TYVA 1CLWA 1WXRA 1TYXA 4V02C 3AK5A 4OJLA 1KQ5A 2YUHA 2VFPA 2BX6A 5JLVC 2J8IA 2XC1A 2BM7A 3H09A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TH0 A;  1QRB A;  1TSP A;  1TYU A;  4OM9 A;  1QA1 A;  2VFM A;  1QA3 A;  3SZE A;  2IOU G;  2VFN A;  2V5I A;  2VFO A;  1TYW A;  1DAB A;  1QRC A;  3ML3 A;  3RIQ A;  1QQ1 A;  1QA2 A;  3SYJ A;  2VFQ A;  1WXR A;  1TYV A;  1CLW A;  1TYX A;  3AK5 A;  2VFP A;  2XC1 A;  4KH3 A;  3H09 A; 
#chains in the Genus database with same CATH topology
 5JMC B;  3ZPP A;  2BM5 A;  3TH0 A;  5AMV A;  4XL9 A;  3P4G A;  2W7Z A;  1QRB A;  1LM1 A;  4XNF A;  4YZQ A;  1VBL A;  4OPW A;  5C1E A;  3VMW A;  2B0R A;  3BH7 B;  1HF2 A;  1X0C A;  1OOC A;  4XN3 A;  2V5I A;  2VFO A;  4OJ6 A;  4Z06 A;  2O04 A;  2XTW A;  1GQ8 A;  4JRA C;  2UVE A;  1K8F A;  4XLC A;  2PYH A;  3SUC A;  1DAB A;  3T9G A;  2X3H A;  1WMR A;  1KCD A;  3N6Z A;  1HG8 A;  1QA2 A;  3B90 A;  2NTQ A;  1OGM X;  3LJY A;  3SQV A;  1WXR A;  4HWV A;  3GQ8 A;  3GQ7 A;  4U4B A;  4XOR A;  4XKW A;  4OJL A;  4EW9 A;  2O1D A;  2XTY A;  4XLE A;  3WWG A;  2J8I A;  4NK6 A;  4C2L A;  3H09 A;  3B8Y A;  3VSU A;  4W8R A;  2BM4 A;  2QX3 A;  1L1I A;  2J8K A;  2NT9 A;  1EA0 A;  2BM6 A;  2F3L A;  2NT6 A;  2XT4 A;  3EQO A;  4MXN A;  2VFM A;  1BN8 A;  1O8E A;  3DU1 X;  1BHE A;  3B4N A;  1PXZ A;  3PET A;  3UW0 A;  2IQ7 A;  1OFE A;  1O8L A;  4AVZ A;  4OJP A;  1IDJ A;  1RWR A;  4MR0 A;  2INU A;  1QRC A;  3NB2 A;  3LYC A;  3N90 A;  4YZA A;  4XLA A;  4URR A;  4Z03 A;  3VST A;  2NZM A;  1O8H A;  4OJO A;  1CLW A;  2NTB A;  1O8M A;  1O88 A;  4V02 C;  1NHC A;  3AK5 A;  4YFO A;  1JRG A;  4XR6 A;  4YZ0 A;  1KQ5 A;  2YUH A;  3VSV A;  2VFP A;  4Z05 A;  4YZX A;  2O0W A;  2NTP A;  2XC1 A;  3FY3 A;  3GQ9 A;  4YC5 A;  3PSS A;  2VBE A;  2UVF A;  2XT2 A;  4YEJ A;  1TSP A;  2O0V A;  1O8D A;  4XOP A;  3SZE A;  1DBO A;  3JX8 A;  1QA3 A;  1K4Z A;  1OGO X;  2IOU G;  1IDK A;  1QJV A;  1XG2 A;  4U49 A;  4XLF A;  1EE6 A;  1EZG A;  4XN0 A;  4YEI A;  2X6X A;  1TYW A;  4OZY A;  3BH6 B;  4YEL A;  2INV A;  1DBG A;  4XM3 A;  3ML3 A;  2QZA A;  3RIQ A;  1QQ1 A;  1O8I A;  3GRH A;  1AIR A;  2NSP A;  2PEC A;  2Z8G A;  4OJ5 A;  3SYJ A;  2VJI A;  1RMG A;  4I84 A;  3SY2 A;  1LLZ A;  2VBK A;  1JTA A;  2QXZ A;  4YCQ A;  3ZSC A;  4XLH A;  1PLU A;  4OZZ A;  4W8S A;  2BX6 A;  3KRG A;  1O8J A;  5JLV C;  1O8G A;  1RU4 A;  1QCX A;  2BM7 A;  4KH3 A;  4XQF A;  2VBM A;  4XKV A;  4W8T A;  1IB4 A;  3LMW A;  2BSP A;  4W8Q A;  1KCC A;  1KTW A;  3PSZ A;  1O8F A;  1TYU A;  3JUR A;  4OM9 A;  1QA1 A;  1PE9 A;  2QY1 A;  2VFN A;  3NAW A;  1CZF A;  4PMH A;  4XON A;  1OFD A;  2O6W A;  1OFM A;  1OFL A;  2X6W A;  4NK8 A;  3GQA A;  3VMV A;  1O8K A;  2NST A;  2G0Y A;  2PYG A;  4XOT A;  3EQN A;  5C1C A;  2VFQ A;  1H80 A;  1TYV A;  2EWE A;  1LLW A;  1TYX A;  2QYU A;  5DNS A;  1K5C A;  2O17 A;  4XMY A;  4YDT A;  2VJJ A;  2ODL A;  1IA5 A;  2XTX A;  2X6Y A;  2X85 A; 
#chains in the Genus database with same CATH homology
 5JMC B;  2BM5 A;  3TH0 A;  2BM4 A;  3P4G A;  2W7Z A;  1QRB A;  4OPW A;  2BM6 A;  2F3L A;  2B0R A;  1TSP A;  1TYU A;  4OM9 A;  1QA1 A;  2VFM A;  3BH7 B;  1QA3 A;  1HF2 A;  3SZE A;  3JX8 A;  1K4Z A;  2IOU G;  2VFN A;  2V5I A;  2VFO A;  3PET A;  4OJ6 A;  4OJP A;  1TYW A;  3BH6 B;  4JRA C;  1K8F A;  1QRC A;  1DAB A;  3LYC A;  3N90 A;  3ML3 A;  3RIQ A;  3N6Z A;  1QQ1 A;  4KH3 A;  1QA2 A;  2G0Y A;  4OJ5 A;  3LJY A;  4OJO A;  2VFQ A;  3SYJ A;  1TYV A;  1CLW A;  1WXR A;  1TYX A;  4V02 C;  3AK5 A;  4OJL A;  1KQ5 A;  2YUH A;  2VFP A;  2BX6 A;  5JLV C;  2J8I A;  2XC1 A;  2BM7 A;  3H09 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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