2VFNA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125a
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSAKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
molecule keywords BIFUNCTIONAL TAIL PROTEIN
total genus 200
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfnA00
2VFQA 2IOUG 4OM9A 2VFOA 1TYXA 1CLWA 3SYJA 1QA1A 1QQ1A 3RIQA 3H09A 2VFNA 1TYVA 1QA2A 2VFMA 1TYWA 2VFPA 2V5IA 3TH0A 1WXRA 1TYUA 4KH3A 1QRCA 3SZEA 1DABA 2XC1A 3AK5A 1QRBA 1QA3A 1TSPA 3ML3A
chains in the Genus database with same CATH superfamily
2VFQA 4XLCA 2VJIA 1LLZA 1HG8A 2VFOA 4XONA 4EW9A 2VBKA 4YZAA 1OFEA 1QA1A 2XT2A 1KCDA 1QQ1A 1VBLA 3VSTA 1KCCA 3RIQA 4URRA 1DBOA 1AIRA 2EWEA 3LYCA 3NAWA 5DNSA 1EE6A 3GQ9A 1NHCA 2PECA 4XORA 4XQFA 2V5IA 2NSTA 4XR6A 4U4BA 2X3HA 3B90A 4MR0A 1O8FA 2IQ7A 3EQNA 3NB2A 4XLAA 4PMHA 3AK5A 1O8KA 2BM7A 2BM5A 4XLEA 2O17A 3PSSA 4OJ5A 2YUHA 2NTQA 1RMGA 3ML3A 3TH0A 1OFLA 1GQ8A 2IOUG 1EZGA 4OPWA 2O6WA 4JRAC 5AMVA 2O0WA 2O04A 1O8EA 1JRGA 1HF2A 1XG2A 4XN0A 1QJVA 4OJPA 1KTWA 1OFMA 4HWVA 4YC5A 4YCQA 1BN8A 1OOCA 1PE9A 4NK8A 2F3LA 1TYVA 3GRHA 2VFMA 4XLHA 1OGMX 4C2LA 5JMCB 1IA5A 1RU4A 1O8LA 2BM4A 1K5CA 1PXZA 3B4NA 4XOTA 4YDTA 2UVEA 1O8IA 4Z05A 3VMVA 1IB4A 4YFOA 2QX3A 4W8RA 4XMYA 4YZ0A 4XKWA 3KRGA 3SZEA 3P4GA 1QCXA 2XC1A 1KQ5A 4Z03A 1RWRA 1QRBA 4AVZA 2BX6A 1H80A 1O8HA 3FY3A 1JTAA 2NTPA 2PYHA 4Z06A 1BHEA 4V02C 4YEIA 3VSUA 4YELA 3LMWA 3SY2A 3EQOA 1EA0A 2B0RA 2QYUA 1TYXA 2X6YA 3LJYA 3PETA 4XNFA 2QY1A 3N6ZA 1O8DA 3ZSCA 2INVA 2QZAA 4OJ6A 3JX8A 2NZMA 5JLVC 1IDJA 2XTWA 2X85A 1QA2A 1LM1A 1K4ZA 2X6WA 2Z8GA 4OJOA 1O8JA 4XL9A 3VSVA 1TYUA 2G0YA 3BH7B 3T9GA 2XTYA 1CZFA 1QRCA 4W8SA 1LLWA 3N90A 1WMRA 4NK6A 3GQAA 2UVFA 3PSZA 1TSPA 4YZXA 4OJLA 4XM3A 1IDKA 2BM6A 3DU1X 3JURA 4XN3A 4OM9A 4XOPA 3BH6B 4MXNA 3SYJA 1CLWA 3ZPPA 1OFDA 2VJJA 1OGOX 3B8YA 1O8MA 2QXZA 2NT9A 2VBEA 1K8FA 2NSPA 2J8KA 4XLFA 4XKVA 2BSPA 3H09A 2XT4A 2VFNA 3WWGA 1X0CA 2VBMA 5C1EA 2X6XA 4W8QA 4W8TA 1TYWA 2VFPA 2W7ZA 1O88A 2J8IA 2NT6A 2O1DA 4OZZA 1WXRA 1O8GA 3UW0A 2NTBA 2ODLA 3GQ8A 2INUA 2PYGA 4OZYA 4KH3A 4YZQA 4I84A 3GQ7A 5C1CA 2XTXA 4U49A 1PLUA 3SQVA 1DABA 1L1IA 3VMWA 2O0VA 1DBGA 1QA3A 3SUCA 4YEJA
chains in the Genus database with same CATH topology
2VFQA 2BM6A 2IOUG 4OPWA 4JRAC 4OM9A 2VFOA 4V02C 2B0RA 1HF2A 1TYXA 1CLWA 3BH6B 3LJYA 3PETA 1QQ1A 3SYJA 1QA1A 3N6ZA 4OJPA 1K8FA 3RIQA 3H09A 3LYCA 4OJ6A 3JX8A 5JLVC 2VFNA 2F3LA 1TYVA 1QA2A 2VFMA 1TYWA 1K4ZA 2V5IA 2VFPA 2J8IA 2W7ZA 3TH0A 2BM4A 5JMCB 4OJOA 1WXRA 1TYUA 2G0YA 3BH7B 1QRCA 4KH3A 3SZEA 3N90A 3P4GA 1DABA 2XC1A 3AK5A 1KQ5A 1QRBA 2BM7A 2BM5A 2BX6A 1QA3A 4OJ5A 2YUHA 1TSPA 3ML3A 4OJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFQ A;  2IOU G;  4OM9 A;  2VFO A;  1TYX A;  1CLW A;  3SYJ A;  1QA1 A;  1QQ1 A;  3RIQ A;  3H09 A;  2VFN A;  1TYV A;  1QA2 A;  2VFM A;  1TYW A;  2VFP A;  2V5I A;  3TH0 A;  1WXR A;  1TYU A;  4KH3 A;  1QRC A;  3SZE A;  1DAB A;  2XC1 A;  3AK5 A;  1QRB A;  1QA3 A;  1TSP A;  3ML3 A; 
#chains in the Genus database with same CATH topology
 2VFQ A;  4XLC A;  2VJI A;  1LLZ A;  1HG8 A;  2VFO A;  4XON A;  4EW9 A;  2VBK A;  4YZA A;  1OFE A;  1QA1 A;  2XT2 A;  1KCD A;  1QQ1 A;  1VBL A;  3VST A;  1KCC A;  3RIQ A;  4URR A;  1DBO A;  1AIR A;  2EWE A;  3LYC A;  3NAW A;  5DNS A;  1EE6 A;  3GQ9 A;  1NHC A;  2PEC A;  4XOR A;  4XQF A;  2V5I A;  2NST A;  4XR6 A;  4U4B A;  2X3H A;  3B90 A;  4MR0 A;  1O8F A;  2IQ7 A;  3EQN A;  3NB2 A;  4XLA A;  4PMH A;  3AK5 A;  1O8K A;  2BM7 A;  2BM5 A;  4XLE A;  2O17 A;  3PSS A;  4OJ5 A;  2YUH A;  2NTQ A;  1RMG A;  3ML3 A;  3TH0 A;  1OFL A;  1GQ8 A;  2IOU G;  1EZG A;  4OPW A;  2O6W A;  4JRA C;  5AMV A;  2O0W A;  2O04 A;  1O8E A;  1JRG A;  1HF2 A;  1XG2 A;  4XN0 A;  1QJV A;  4OJP A;  1KTW A;  1OFM A;  4HWV A;  4YC5 A;  4YCQ A;  1BN8 A;  1OOC A;  1PE9 A;  4NK8 A;  2F3L A;  1TYV A;  3GRH A;  2VFM A;  4XLH A;  1OGM X;  4C2L A;  5JMC B;  1IA5 A;  1RU4 A;  1O8L A;  2BM4 A;  1K5C A;  1PXZ A;  3B4N A;  4XOT A;  4YDT A;  2UVE A;  1O8I A;  4Z05 A;  3VMV A;  1IB4 A;  4YFO A;  2QX3 A;  4W8R A;  4XMY A;  4YZ0 A;  4XKW A;  3KRG A;  3SZE A;  3P4G A;  1QCX A;  2XC1 A;  1KQ5 A;  4Z03 A;  1RWR A;  1QRB A;  4AVZ A;  2BX6 A;  1H80 A;  1O8H A;  3FY3 A;  1JTA A;  2NTP A;  2PYH A;  4Z06 A;  1BHE A;  4V02 C;  4YEI A;  3VSU A;  4YEL A;  3LMW A;  3SY2 A;  3EQO A;  1EA0 A;  2B0R A;  2QYU A;  1TYX A;  2X6Y A;  3LJY A;  3PET A;  4XNF A;  2QY1 A;  3N6Z A;  1O8D A;  3ZSC A;  2INV A;  2QZA A;  4OJ6 A;  3JX8 A;  2NZM A;  5JLV C;  1IDJ A;  2XTW A;  2X85 A;  1QA2 A;  1LM1 A;  1K4Z A;  2X6W A;  2Z8G A;  4OJO A;  1O8J A;  4XL9 A;  3VSV A;  1TYU A;  2G0Y A;  3BH7 B;  3T9G A;  2XTY A;  1CZF A;  1QRC A;  4W8S A;  1LLW A;  3N90 A;  1WMR A;  4NK6 A;  3GQA A;  2UVF A;  3PSZ A;  1TSP A;  4YZX A;  4OJL A;  4XM3 A;  1IDK A;  2BM6 A;  3DU1 X;  3JUR A;  4XN3 A;  4OM9 A;  4XOP A;  3BH6 B;  4MXN A;  3SYJ A;  1CLW A;  3ZPP A;  1OFD A;  2VJJ A;  1OGO X;  3B8Y A;  1O8M A;  2QXZ A;  2NT9 A;  2VBE A;  1K8F A;  2NSP A;  2J8K A;  4XLF A;  4XKV A;  2BSP A;  3H09 A;  2XT4 A;  2VFN A;  3WWG A;  1X0C A;  2VBM A;  5C1E A;  2X6X A;  4W8Q A;  4W8T A;  1TYW A;  2VFP A;  2W7Z A;  1O88 A;  2J8I A;  2NT6 A;  2O1D A;  4OZZ A;  1WXR A;  1O8G A;  3UW0 A;  2NTB A;  2ODL A;  3GQ8 A;  2INU A;  2PYG A;  4OZY A;  4KH3 A;  4YZQ A;  4I84 A;  3GQ7 A;  5C1C A;  2XTX A;  4U49 A;  1PLU A;  3SQV A;  1DAB A;  1L1I A;  3VMW A;  2O0V A;  1DBG A;  1QA3 A;  3SUC A;  4YEJ A; 
#chains in the Genus database with same CATH homology
 2VFQ A;  2BM6 A;  2IOU G;  4OPW A;  4JRA C;  4OM9 A;  2VFO A;  4V02 C;  2B0R A;  1HF2 A;  1TYX A;  1CLW A;  3BH6 B;  3LJY A;  3PET A;  1QQ1 A;  3SYJ A;  1QA1 A;  3N6Z A;  4OJP A;  1K8F A;  3RIQ A;  3H09 A;  3LYC A;  4OJ6 A;  3JX8 A;  5JLV C;  2VFN A;  2F3L A;  1TYV A;  1QA2 A;  2VFM A;  1TYW A;  1K4Z A;  2V5I A;  2VFP A;  2J8I A;  2W7Z A;  3TH0 A;  2BM4 A;  5JMC B;  4OJO A;  1WXR A;  1TYU A;  2G0Y A;  3BH7 B;  1QRC A;  4KH3 A;  3SZE A;  3N90 A;  3P4G A;  1DAB A;  2XC1 A;  3AK5 A;  1KQ5 A;  1QRB A;  2BM7 A;  2BM5 A;  2BX6 A;  1QA3 A;  4OJ5 A;  2YUH A;  1TSP A;  3ML3 A;  4OJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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