2VFNA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125a
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSAKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 200
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfnA00
3TH0A 2VFOA 3H09A 3SZEA 3SYJA 1QRCA 1TYUA 1QA2A 2VFQA 3ML3A 1TYXA 1QRBA 2XC1A 1TYWA 1QQ1A 2V5IA 3AK5A 2VFNA 4KH3A 4OM9A 1TSPA 2VFPA 1WXRA 1DABA 1QA3A 1CLWA 2IOUG 3RIQA 2VFMA 1QA1A 1TYVA
chains in the Genus database with same CATH superfamily
4URRA 1RU4A 4XKVA 3ZSCA 2NZMA 2QX3A 4OJOA 3SZEA 4I84A 5AMVA 4YZXA 1H80A 2O1DA 1IA5A 1KQ5A 1OGMX 3JX8A 4NK8A 2BM7A 1JRGA 2G0YA 1O8GA 2J8KA 2IQ7A 1QA2A 2VFQA 1IDKA 3ML3A 2NTPA 1LM1A 4Z06A 4YDTA 1O8LA 1TYWA 1K4ZA 1O8IA 2QZAA 4OJLA 4V02C 4YZQA 3AK5A 4YC5A 2VFNA 4YEJA 2ODLA 3JURA 4XLFA 1LLZA 1AIRA 1BHEA 2EWEA 3VMWA 1DABA 2QY1A 1CLWA 2F3LA 4YFOA 3SQVA 1O8HA 1DBOA 2BM4A 2VFMA 4XLAA 4XN3A 4OJ6A 4OZZA 2XT4A 1OFEA 2O0VA 2B0RA 1TYVA 1WMRA 2BM6A 2UVFA 2NSPA 2O17A 2VFOA 5C1EA 2XTWA 3GQAA 3SYJA 4OJPA 3VSTA 1QRCA 3GQ8A 2VJJA 4XNFA 3UW0A 4NK6A 1TYXA 1QRBA 3P4GA 3PSZA 4XLHA 4XLEA 4EW9A 2O04A 1PXZA 1K8FA 2PYGA 3LYCA 1K5CA 1QQ1A 3VSVA 3PSSA 3PETA 1X0CA 3EQNA 1IB4A 4OM9A 1O8EA 2PECA 4W8QA 1CZFA 1O8KA 2UVEA 3GQ7A 1HG8A 4Z05A 3BH6B 3NB2A 1WXRA 3BH7B 4YCQA 4YELA 3VSUA 4XQFA 4XLCA 3TH0A 2VBEA 1O8FA 1NHCA 1EZGA 2XTYA 3LMWA 4XMYA 2O6WA 3H09A 1EE6A 2BSPA 2INUA 4Z03A 2X6XA 4XONA 3EQOA 2VBKA 1O8JA 1OFMA 1XG2A 4OJ5A 3SY2A 3GQ9A 2NSTA 2XT2A 4U4BA 2PYHA 4AVZA 2X6YA 2V5IA 4XN0A 1EA0A 1RMGA 2NT9A 4W8RA 4KH3A 1O8DA 1QJVA 1LLWA 4XKWA 2O0WA 1RWRA 4C2LA 4XL9A 1O88A 1JTAA 4OZYA 4MR0A 2QYUA 3RIQA 3ZPPA 3GRHA 4JRAC 3T9GA 1PLUA 1PE9A 3LJYA 4U49A 2NTBA 1QA1A 1OOCA 2NTQA 2X85A 1L1IA 5JMCB 5JLVC 2INVA 2XTXA 1KCCA 1OGOX 1KTWA 4XM3A 4XR6A 3FY3A 1VBLA 1TYUA 1OFLA 4XOPA 3NAWA 4XOTA 2W7ZA 2XC1A 3VMVA 5C1CA 2J8IA 3B90A 2X3HA 2YUHA 4MXNA 1GQ8A 4HWVA 1IDJA 4XORA 1HF2A 2Z8GA 1DBGA 1TSPA 2VJIA 2VFPA 2X6WA 3KRGA 3N90A 4YZAA 3B8YA 2QXZA 3B4NA 4W8TA 3SUCA 5DNSA 3WWGA 1O8MA 4YEIA 1QCXA 1KCDA 2NT6A 4W8SA 1QA3A 4OPWA 2IOUG 2VBMA 2BM5A 1BN8A 2BX6A 4YZ0A 3N6ZA 3DU1X 1OFDA 4PMHA
chains in the Genus database with same CATH topology
3TH0A 2BM6A 2VFOA 3H09A 4OJOA 3SZEA 5JLVC 5JMCB 3SYJA 1KQ5A 3JX8A 4OJPA 2BM7A 2G0YA 1QRCA 1TYUA 1QA2A 2VFQA 3ML3A 1TYXA 1QRBA 3P4GA 2W7ZA 2XC1A 4OJ5A 1K8FA 1TYWA 1K4ZA 2J8IA 1QQ1A 2V5IA 3LYCA 4OJLA 2YUHA 4V02C 3AK5A 2VFNA 1HF2A 3PETA 4KH3A 4OM9A 3N90A 1TSPA 1TYVA 2VFPA 1WXRA 1DABA 1QA3A 1CLWA 2F3LA 4OPWA 2IOUG 2BM5A 3BH6B 3RIQA 2BX6A 3BH7B 2BM4A 2VFMA 3N6ZA 4JRAC 4OJ6A 3LJYA 1QA1A 2B0RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TH0 A;  2VFO A;  3H09 A;  3SZE A;  3SYJ A;  1QRC A;  1TYU A;  1QA2 A;  2VFQ A;  3ML3 A;  1TYX A;  1QRB A;  2XC1 A;  1TYW A;  1QQ1 A;  2V5I A;  3AK5 A;  2VFN A;  4KH3 A;  4OM9 A;  1TSP A;  2VFP A;  1WXR A;  1DAB A;  1QA3 A;  1CLW A;  2IOU G;  3RIQ A;  2VFM A;  1QA1 A;  1TYV A; 
#chains in the Genus database with same CATH topology
 4URR A;  1RU4 A;  4XKV A;  3ZSC A;  2NZM A;  2QX3 A;  4OJO A;  3SZE A;  4I84 A;  5AMV A;  4YZX A;  1H80 A;  2O1D A;  1IA5 A;  1KQ5 A;  1OGM X;  3JX8 A;  4NK8 A;  2BM7 A;  1JRG A;  2G0Y A;  1O8G A;  2J8K A;  2IQ7 A;  1QA2 A;  2VFQ A;  1IDK A;  3ML3 A;  2NTP A;  1LM1 A;  4Z06 A;  4YDT A;  1O8L A;  1TYW A;  1K4Z A;  1O8I A;  2QZA A;  4OJL A;  4V02 C;  4YZQ A;  3AK5 A;  4YC5 A;  2VFN A;  4YEJ A;  2ODL A;  3JUR A;  4XLF A;  1LLZ A;  1AIR A;  1BHE A;  2EWE A;  3VMW A;  1DAB A;  2QY1 A;  1CLW A;  2F3L A;  4YFO A;  3SQV A;  1O8H A;  1DBO A;  2BM4 A;  2VFM A;  4XLA A;  4XN3 A;  4OJ6 A;  4OZZ A;  2XT4 A;  1OFE A;  2O0V A;  2B0R A;  1TYV A;  1WMR A;  2BM6 A;  2UVF A;  2NSP A;  2O17 A;  2VFO A;  5C1E A;  2XTW A;  3GQA A;  3SYJ A;  4OJP A;  3VST A;  1QRC A;  3GQ8 A;  2VJJ A;  4XNF A;  3UW0 A;  4NK6 A;  1TYX A;  1QRB A;  3P4G A;  3PSZ A;  4XLH A;  4XLE A;  4EW9 A;  2O04 A;  1PXZ A;  1K8F A;  2PYG A;  3LYC A;  1K5C A;  1QQ1 A;  3VSV A;  3PSS A;  3PET A;  1X0C A;  3EQN A;  1IB4 A;  4OM9 A;  1O8E A;  2PEC A;  4W8Q A;  1CZF A;  1O8K A;  2UVE A;  3GQ7 A;  1HG8 A;  4Z05 A;  3BH6 B;  3NB2 A;  1WXR A;  3BH7 B;  4YCQ A;  4YEL A;  3VSU A;  4XQF A;  4XLC A;  3TH0 A;  2VBE A;  1O8F A;  1NHC A;  1EZG A;  2XTY A;  3LMW A;  4XMY A;  2O6W A;  3H09 A;  1EE6 A;  2BSP A;  2INU A;  4Z03 A;  2X6X A;  4XON A;  3EQO A;  2VBK A;  1O8J A;  1OFM A;  1XG2 A;  4OJ5 A;  3SY2 A;  3GQ9 A;  2NST A;  2XT2 A;  4U4B A;  2PYH A;  4AVZ A;  2X6Y A;  2V5I A;  4XN0 A;  1EA0 A;  1RMG A;  2NT9 A;  4W8R A;  4KH3 A;  1O8D A;  1QJV A;  1LLW A;  4XKW A;  2O0W A;  1RWR A;  4C2L A;  4XL9 A;  1O88 A;  1JTA A;  4OZY A;  4MR0 A;  2QYU A;  3RIQ A;  3ZPP A;  3GRH A;  4JRA C;  3T9G A;  1PLU A;  1PE9 A;  3LJY A;  4U49 A;  2NTB A;  1QA1 A;  1OOC A;  2NTQ A;  2X85 A;  1L1I A;  5JMC B;  5JLV C;  2INV A;  2XTX A;  1KCC A;  1OGO X;  1KTW A;  4XM3 A;  4XR6 A;  3FY3 A;  1VBL A;  1TYU A;  1OFL A;  4XOP A;  3NAW A;  4XOT A;  2W7Z A;  2XC1 A;  3VMV A;  5C1C A;  2J8I A;  3B90 A;  2X3H A;  2YUH A;  4MXN A;  1GQ8 A;  4HWV A;  1IDJ A;  4XOR A;  1HF2 A;  2Z8G A;  1DBG A;  1TSP A;  2VJI A;  2VFP A;  2X6W A;  3KRG A;  3N90 A;  4YZA A;  3B8Y A;  2QXZ A;  3B4N A;  4W8T A;  3SUC A;  5DNS A;  3WWG A;  1O8M A;  4YEI A;  1QCX A;  1KCD A;  2NT6 A;  4W8S A;  1QA3 A;  4OPW A;  2IOU G;  2VBM A;  2BM5 A;  1BN8 A;  2BX6 A;  4YZ0 A;  3N6Z A;  3DU1 X;  1OFD A;  4PMH A; 
#chains in the Genus database with same CATH homology
 3TH0 A;  2BM6 A;  2VFO A;  3H09 A;  4OJO A;  3SZE A;  5JLV C;  5JMC B;  3SYJ A;  1KQ5 A;  3JX8 A;  4OJP A;  2BM7 A;  2G0Y A;  1QRC A;  1TYU A;  1QA2 A;  2VFQ A;  3ML3 A;  1TYX A;  1QRB A;  3P4G A;  2W7Z A;  2XC1 A;  4OJ5 A;  1K8F A;  1TYW A;  1K4Z A;  2J8I A;  1QQ1 A;  2V5I A;  3LYC A;  4OJL A;  2YUH A;  4V02 C;  3AK5 A;  2VFN A;  1HF2 A;  3PET A;  4KH3 A;  4OM9 A;  3N90 A;  1TSP A;  1TYV A;  2VFP A;  1WXR A;  1DAB A;  1QA3 A;  1CLW A;  2F3L A;  4OPW A;  2IOU G;  2BM5 A;  3BH6 B;  3RIQ A;  2BX6 A;  3BH7 B;  2BM4 A;  2VFM A;  3N6Z A;  4JRA C;  4OJ6 A;  3LJY A;  1QA1 A;  2B0R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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