2VFNA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125a
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSAKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
molecule keywords BIFUNCTIONAL TAIL PROTEIN
total genus 200
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfnA00
1QA1A 1QRCA 1TYVA 1QA2A 3TH0A 1TYUA 1WXRA 3ML3A 2VFOA 4KH3A 1TYXA 2VFQA 3SYJA 3RIQA 2VFPA 1TYWA 1DABA 2XC1A 4OM9A 1QA3A 1QQ1A 3AK5A 2IOUG 3H09A 1CLWA 1TSPA 2V5IA 1QRBA 3SZEA 2VFNA 2VFMA
chains in the Genus database with same CATH superfamily
1BN8A 1O88A 5C1EA 1KTWA 2J8KA 3B90A 1O8LA 1PLUA 4YZ0A 2G0YA 1KCCA 2ODLA 4Z05A 4XQFA 4XOPA 5JMCB 2VFOA 3ML3A 3GQ8A 3SUCA 1PXZA 1JRGA 1TYXA 2BM5A 3B8YA 4XN0A 2BM4A 2QXZA 2B0RA 4YCQA 1OGMX 2VFPA 2XT2A 4XLEA 2NTQA 1DABA 1O8MA 2PYHA 1LM1A 2VJIA 4URRA 1KCDA 3PETA 1BHEA 1O8HA 3NAWA 1OOCA 1O8KA 3NB2A 1CLWA 3WWGA 4EW9A 1WMRA 4YFOA 2X6WA 2BSPA 3KRGA 1H80A 1IDKA 3VSTA 2XTYA 4W8TA 3GQAA 1L1IA 4YZXA 4U49A 1QRCA 4OJOA 3TH0A 1LLZA 1X0CA 1PE9A 1TYUA 2VBMA 1O8IA 3P4GA 2BX6A 1OGOX 2NT9A 3VMWA 2O6WA 4XM3A 4Z03A 1CZFA 2NZMA 3VMVA 3VSVA 3LYCA 3SYJA 1DBGA 2NT6A 4Z06A 5AMVA 3SQVA 1IB4A 1QA3A 2O1DA 1VBLA 1OFEA 1QQ1A 2BM6A 3GRHA 4NK8A 2X85A 4XKWA 3H09A 3PSZA 4W8RA 2V5IA 1TSPA 4OJLA 1QRBA 4XLHA 4XONA 2NSTA 2PYGA 5JLVC 3BH7B 2VFNA 1O8GA 1XG2A 4YELA 1EA0A 1O8EA 1AIRA 3GQ9A 4U4BA 4AVZA 1TYVA 2VBKA 3JURA 1WXRA 4XN3A 4OJPA 2QY1A 2INVA 1K4ZA 4HWVA 4YC5A 1HF2A 2F3LA 1LLWA 2J8IA 2NSPA 1O8DA 2QYUA 4OZYA 1GQ8A 2VFQA 3RIQA 2QX3A 1TYWA 3GQ7A 4OM9A 4MXNA 2NTBA 4YZAA 1RMGA 4YEJA 2PECA 1EE6A 4JRAC 1RU4A 4W8QA 1OFMA 3SY2A 1O8JA 2VBEA 5DNSA 1K5CA 4XOTA 2X6XA 3PSSA 1QCXA 1NHCA 2VJJA 1IDJA 2O0VA 2QZAA 4OZZA 2VFMA 3UW0A 4XMYA 2BM7A 1KQ5A 2Z8GA 2UVEA 3LMWA 4XLAA 3EQNA 3T9GA 1QA1A 2INUA 4W8SA 4XL9A 1QA2A 3VSUA 4XORA 1JTAA 4XNFA 1HG8A 2O04A 1IA5A 4PMHA 4KH3A 4OJ6A 5C1CA 3B4NA 1QJVA 3FY3A 4NK6A 2W7ZA 3EQOA 4XR6A 3DU1X 1EZGA 1DBOA 1RWRA 1OFDA 2O0WA 3BH6B 4XKVA 4YEIA 2YUHA 2XC1A 3N6ZA 2X3HA 3ZSCA 4MR0A 3AK5A 2IOUG 2EWEA 1O8FA 2X6YA 2O17A 3LJYA 4V02C 2IQ7A 2UVFA 2XTWA 4OJ5A 4XLFA 4YDTA 4YZQA 2NTPA 3N90A 4I84A 3SZEA 4OPWA 1K8FA 2XT4A 2XTXA 3ZPPA 3JX8A 4C2LA 4XLCA 1OFLA
chains in the Genus database with same CATH topology
1QA1A 1QRCA 1TYVA 4OJOA 1QA2A 3TH0A 2G0YA 1TYUA 3P4GA 5JMCB 2BX6A 1WXRA 2VFOA 3ML3A 4OJPA 1K4ZA 4KH3A 1HF2A 4OJ6A 2F3LA 2J8IA 1TYXA 2BM5A 2W7ZA 2BM4A 3LYCA 2B0RA 2VFQA 3RIQA 3SYJA 2VFPA 3BH6B 1TYWA 2YUHA 2XC1A 4OM9A 3N6ZA 1DABA 1QA3A 1QQ1A 4JRAC 2BM6A 3AK5A 2IOUG 3PETA 3H09A 3LJYA 4V02C 1CLWA 1TSPA 2V5IA 1QRBA 3JX8A 4OJ5A 4OJLA 3SZEA 5JLVC 3BH7B 3N90A 2VFNA 1K8FA 4OPWA 2VFMA 2BM7A 1KQ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QA1 A;  1QRC A;  1TYV A;  1QA2 A;  3TH0 A;  1TYU A;  1WXR A;  3ML3 A;  2VFO A;  4KH3 A;  1TYX A;  2VFQ A;  3SYJ A;  3RIQ A;  2VFP A;  1TYW A;  1DAB A;  2XC1 A;  4OM9 A;  1QA3 A;  1QQ1 A;  3AK5 A;  2IOU G;  3H09 A;  1CLW A;  1TSP A;  2V5I A;  1QRB A;  3SZE A;  2VFN A;  2VFM A; 
#chains in the Genus database with same CATH topology
 1BN8 A;  1O88 A;  5C1E A;  1KTW A;  2J8K A;  3B90 A;  1O8L A;  1PLU A;  4YZ0 A;  2G0Y A;  1KCC A;  2ODL A;  4Z05 A;  4XQF A;  4XOP A;  5JMC B;  2VFO A;  3ML3 A;  3GQ8 A;  3SUC A;  1PXZ A;  1JRG A;  1TYX A;  2BM5 A;  3B8Y A;  4XN0 A;  2BM4 A;  2QXZ A;  2B0R A;  4YCQ A;  1OGM X;  2VFP A;  2XT2 A;  4XLE A;  2NTQ A;  1DAB A;  1O8M A;  2PYH A;  1LM1 A;  2VJI A;  4URR A;  1KCD A;  3PET A;  1BHE A;  1O8H A;  3NAW A;  1OOC A;  1O8K A;  3NB2 A;  1CLW A;  3WWG A;  4EW9 A;  1WMR A;  4YFO A;  2X6W A;  2BSP A;  3KRG A;  1H80 A;  1IDK A;  3VST A;  2XTY A;  4W8T A;  3GQA A;  1L1I A;  4YZX A;  4U49 A;  1QRC A;  4OJO A;  3TH0 A;  1LLZ A;  1X0C A;  1PE9 A;  1TYU A;  2VBM A;  1O8I A;  3P4G A;  2BX6 A;  1OGO X;  2NT9 A;  3VMW A;  2O6W A;  4XM3 A;  4Z03 A;  1CZF A;  2NZM A;  3VMV A;  3VSV A;  3LYC A;  3SYJ A;  1DBG A;  2NT6 A;  4Z06 A;  5AMV A;  3SQV A;  1IB4 A;  1QA3 A;  2O1D A;  1VBL A;  1OFE A;  1QQ1 A;  2BM6 A;  3GRH A;  4NK8 A;  2X85 A;  4XKW A;  3H09 A;  3PSZ A;  4W8R A;  2V5I A;  1TSP A;  4OJL A;  1QRB A;  4XLH A;  4XON A;  2NST A;  2PYG A;  5JLV C;  3BH7 B;  2VFN A;  1O8G A;  1XG2 A;  4YEL A;  1EA0 A;  1O8E A;  1AIR A;  3GQ9 A;  4U4B A;  4AVZ A;  1TYV A;  2VBK A;  3JUR A;  1WXR A;  4XN3 A;  4OJP A;  2QY1 A;  2INV A;  1K4Z A;  4HWV A;  4YC5 A;  1HF2 A;  2F3L A;  1LLW A;  2J8I A;  2NSP A;  1O8D A;  2QYU A;  4OZY A;  1GQ8 A;  2VFQ A;  3RIQ A;  2QX3 A;  1TYW A;  3GQ7 A;  4OM9 A;  4MXN A;  2NTB A;  4YZA A;  1RMG A;  4YEJ A;  2PEC A;  1EE6 A;  4JRA C;  1RU4 A;  4W8Q A;  1OFM A;  3SY2 A;  1O8J A;  2VBE A;  5DNS A;  1K5C A;  4XOT A;  2X6X A;  3PSS A;  1QCX A;  1NHC A;  2VJJ A;  1IDJ A;  2O0V A;  2QZA A;  4OZZ A;  2VFM A;  3UW0 A;  4XMY A;  2BM7 A;  1KQ5 A;  2Z8G A;  2UVE A;  3LMW A;  4XLA A;  3EQN A;  3T9G A;  1QA1 A;  2INU A;  4W8S A;  4XL9 A;  1QA2 A;  3VSU A;  4XOR A;  1JTA A;  4XNF A;  1HG8 A;  2O04 A;  1IA5 A;  4PMH A;  4KH3 A;  4OJ6 A;  5C1C A;  3B4N A;  1QJV A;  3FY3 A;  4NK6 A;  2W7Z A;  3EQO A;  4XR6 A;  3DU1 X;  1EZG A;  1DBO A;  1RWR A;  1OFD A;  2O0W A;  3BH6 B;  4XKV A;  4YEI A;  2YUH A;  2XC1 A;  3N6Z A;  2X3H A;  3ZSC A;  4MR0 A;  3AK5 A;  2IOU G;  2EWE A;  1O8F A;  2X6Y A;  2O17 A;  3LJY A;  4V02 C;  2IQ7 A;  2UVF A;  2XTW A;  4OJ5 A;  4XLF A;  4YDT A;  4YZQ A;  2NTP A;  3N90 A;  4I84 A;  3SZE A;  4OPW A;  1K8F A;  2XT4 A;  2XTX A;  3ZPP A;  3JX8 A;  4C2L A;  4XLC A;  1OFL A; 
#chains in the Genus database with same CATH homology
 1QA1 A;  1QRC A;  1TYV A;  4OJO A;  1QA2 A;  3TH0 A;  2G0Y A;  1TYU A;  3P4G A;  5JMC B;  2BX6 A;  1WXR A;  2VFO A;  3ML3 A;  4OJP A;  1K4Z A;  4KH3 A;  1HF2 A;  4OJ6 A;  2F3L A;  2J8I A;  1TYX A;  2BM5 A;  2W7Z A;  2BM4 A;  3LYC A;  2B0R A;  2VFQ A;  3RIQ A;  3SYJ A;  2VFP A;  3BH6 B;  1TYW A;  2YUH A;  2XC1 A;  4OM9 A;  3N6Z A;  1DAB A;  1QA3 A;  1QQ1 A;  4JRA C;  2BM6 A;  3AK5 A;  2IOU G;  3PET A;  3H09 A;  3LJY A;  4V02 C;  1CLW A;  1TSP A;  2V5I A;  1QRB A;  3JX8 A;  4OJ5 A;  4OJL A;  3SZE A;  5JLV C;  3BH7 B;  3N90 A;  2VFN A;  1K8F A;  4OPW A;  2VFM A;  2BM7 A;  1KQ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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