1X0CA

Improved crystal structure of isopullulanase from aspergillus niger atcc 9642
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
549
structure length
549
Chain Sequence
REFMAVTANNSQLLTWWHNTGEINTQTPVADGNVRQSGLYSVKVQTTPASSSLYYDSFVYLAIPGNGMSDQLQYTQGYNQTQAWTSFLYSHDATVKISRNGSSANSNVVIRPTSLNFPVRYDNQSVYITVPYSPTGYRFSVEFDDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMYPGTILQDVFYHTDDDGLKMYYSNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQAYANAGNNPGIFGAVNNYLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQITVTDFSIEGFTVGNTTITASNAASVGRIDGVDPAYAGSVHYID
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Isopullulanase
publication title Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
pubmed doi rcsb
source organism Aspergillus niger
total genus 181
structure length 549
sequence length 549
chains with identical sequence B
ec nomenclature ec 3.2.1.57: Isopullulanase.
pdb deposition date 2005-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
A PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
A PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1x0cA01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1x0cA02
3VSUA 4AVZA 1HG8A 4XLEA 2IQ7A 4OJLA 1BHEA 4XQFA 4XORA 4U49A 3KRGA 2NTBA 1X0CA 1OFLA 1KCDA 2VJIA 2NTQA 2X3HA 2QX3A 1O8FA 2ODLA 1O8IA 3GRHA 4XMYA 4OJ5A 2VJJA 3GQ7A 4W8SA 3GQ8A 4YZAA 1OGMX 1PXZA 3UW0A 4YELA 1IB4A 4YZXA 3VMWA 1QCXA 1DBGA 1PLUA 2INUA 4XKVA 1AIRA 2NTPA 4OZZA 2NZMA 4C2LA 1JTAA 2INVA 3B90A 4XR6A 2X6WA 2X6YA 1OGOX 4XNFA 3B8YA 4XN3A 1QJVA 4PMHA 2NT6A 4XN0A 3GQAA 3LMWA 4XLAA 1O8GA 1H80A 4I84A 4XKWA 2X85A 1WMRA 4NK6A 2QY1A 1IA5A 1CZFA 3T9GA 3WWGA 3B4NA 4XLCA 1O8JA 1BN8A 1IDKA 2X6XA 1EE6A 2NSTA 4URRA 2UVEA 2UVFA 2PECA 3EQOA 2QXZA 1OFMA 4XOPA 2O0VA 4YEJA 1KCCA 4XL9A 1RWRA 1JRGA 4OJ6A 1GQ8A 4EW9A 4Z05A 2PYHA 4W8RA 3GQ9A 3VSVA 1O8EA 1O88A 2O17A 3FY3A 1OOCA 4OJPA 1RU4A 5C1EA 1O8KA 3ZSCA 4XLFA 2VBMA 1O8DA 1VBLA 2EWEA 4OZYA 2PYGA 4Z06A 3VSTA 4XM3A 1NHCA 1O8MA 2VBEA 2VBKA 5AMVA 4XLHA 4Z03A 2O1DA 1K5CA 2NT9A 4MR0A 4W8TA 4XOTA 4MXNA 1O8LA 1O8HA 1RMGA 1PE9A 4U4BA 4W8QA 2O04A 2O0WA 4NK8A 4HWVA 1XG2A 4OJOA 1KTWA 3VMVA 3ZPPA 4XONA 2BSPA 5C1CA 3EQNA 1IDJA 3SUCA 4YZ0A 4YZQA 2Z8GA 2NSPA 1DBOA 3JURA
chains in the Genus database with same CATH superfamily
3VSUA 4AVZA 2XTXA 2XT2A 1HG8A 4XLEA 2IQ7A 4OJLA 1BHEA 1EA0A 3SZEA 4XQFA 2IOUG 1QA2A 4XORA 4U49A 3KRGA 2NTBA 1X0CA 1OFLA 4YCQA 5DNSA 1KCDA 3BH7B 2VJIA 2NTQA 2X3HA 2QX3A 1O8FA 2ODLA 1O8IA 3GRHA 3LYCA 4XMYA 4OJ5A 2VJJA 3GQ7A 4W8SA 3GQ8A 4YC5A 1KQ5A 4YZAA 1OGMX 1PXZA 3UW0A 4YELA 3PSSA 1IB4A 4YZXA 1EZGA 2QZAA 3VMWA 2INUA 1DBGA 1PLUA 1QCXA 4XKVA 1AIRA 1QQ1A 4YDTA 2NTPA 2XTWA 2NZMA 4OZZA 4C2LA 1JTAA 2INVA 3B90A 1TYVA 3TH0A 4XR6A 2X6WA 2X6YA 3DU1X 1K8FA 1OGOX 4YEIA 4JRAC 4XNFA 3B8YA 4XN3A 1QJVA 1TYXA 2VFQA 3ML3A 2NT6A 4PMHA 4XN0A 3GQAA 3LMWA 3NB2A 1O8GA 1H80A 3P4GA 4I84A 2W7ZA 4XLAA 4XKWA 2YUHA 2X85A 1WMRA 4NK6A 1DABA 2VFMA 2QY1A 1OFEA 2BM5A 3SYJA 1IA5A 1CZFA 2XT4A 3T9GA 3WWGA 3B4NA 4XLCA 3PSZA 2O6WA 1O8JA 1BN8A 1IDKA 2B0RA 1TYUA 2X6XA 2XC1A 1EE6A 2NSTA 4URRA 2UVEA 2UVFA 5JLVC 2PECA 3AK5A 1WXRA 3EQOA 2QXZA 1OFMA 4XOPA 2O0VA 4YEJA 1KCCA 4XL9A 1K4ZA 2J8KA 1RWRA 1JRGA 4OJ6A 1GQ8A 1QRCA 4V02C 4EW9A 4Z05A 2PYHA 4OPWA 4W8RA 3GQ9A 3VSVA 1O8EA 1O88A 2O17A 4KH3A 3FY3A 5JMCB 1LM1A 1OOCA 2V5IA 4OJPA 1RU4A 2QYUA 3JX8A 5C1EA 1TSPA 2BX6A 2VFNA 1QRBA 3NAWA 1O8KA 2J8IA 3ZSCA 4XLFA 3H09A 2VBMA 1O8DA 1QA3A 3N90A 2F3LA 1VBLA 2EWEA 2VFOA 4OZYA 2PYGA 4Z06A 3VSTA 4XM3A 1NHCA 1LLWA 1O8MA 2VBEA 1L1IA 3SQVA 2VBKA 1CLWA 2BM6A 3LJYA 5AMVA 4XLHA 4Z03A 2O1DA 1HF2A 1OFDA 2NT9A 4YFOA 1K5CA 4MR0A 4W8TA 4XOTA 3RIQA 4MXNA 1QA1A 3PETA 2BM7A 1O8LA 1O8HA 1RMGA 1PE9A 3N6ZA 2XTYA 4U4BA 4W8QA 2O04A 2O0WA 3SY2A 4OM9A 4NK8A 4HWVA 1XG2A 4OJOA 1KTWA 3VMVA 3ZPPA 4XONA 2BSPA 2VFPA 5C1CA 2G0YA 3EQNA 2BM4A 1IDJA 3SUCA 1LLZA 1TYWA 3BH6B 4YZQA 4YZ0A 2Z8GA 2NSPA 1DBOA 3JURA
chains in the Genus database with same CATH topology
3VSUA 4AVZA 1HG8A 4XLEA 2IQ7A 4OJLA 1BHEA 4XQFA 4XORA 4U49A 3KRGA 2NTBA 1X0CA 1OFLA 1KCDA 2VJIA 2NTQA 2X3HA 2QX3A 1O8FA 2ODLA 1O8IA 3GRHA 4XMYA 4OJ5A 2VJJA 3GQ7A 4W8SA 3GQ8A 4YZAA 1OGMX 1PXZA 3UW0A 4YELA 1IB4A 4YZXA 3VMWA 1QCXA 1DBGA 1PLUA 2INUA 4XKVA 1AIRA 2NTPA 4OZZA 2NZMA 4C2LA 1JTAA 2INVA 3B90A 4XR6A 2X6WA 2X6YA 1OGOX 4XNFA 3B8YA 4XN3A 1QJVA 4PMHA 2NT6A 4XN0A 3GQAA 3LMWA 4XLAA 1O8GA 1H80A 4I84A 4XKWA 2X85A 1WMRA 4NK6A 2QY1A 1IA5A 1CZFA 3T9GA 3WWGA 3B4NA 4XLCA 1O8JA 1BN8A 1IDKA 2X6XA 1EE6A 2NSTA 4URRA 2UVEA 2UVFA 2PECA 3EQOA 2QXZA 1OFMA 4XOPA 2O0VA 4YEJA 1KCCA 4XL9A 1RWRA 1JRGA 4OJ6A 1GQ8A 4EW9A 4Z05A 2PYHA 4W8RA 3GQ9A 3VSVA 1O8EA 1O88A 2O17A 3FY3A 1OOCA 4OJPA 1RU4A 5C1EA 1O8KA 3ZSCA 4XLFA 2VBMA 1O8DA 1VBLA 2EWEA 4OZYA 2PYGA 4Z06A 3VSTA 4XM3A 1NHCA 1O8MA 2VBEA 2VBKA 5AMVA 4XLHA 4Z03A 2O1DA 1K5CA 2NT9A 4MR0A 4W8TA 4XOTA 4MXNA 1O8LA 1O8HA 1RMGA 1PE9A 4U4BA 4W8QA 2O04A 2O0WA 4NK8A 4HWVA 1XG2A 4OJOA 1KTWA 3VMVA 3ZPPA 4XONA 2BSPA 5C1CA 3EQNA 1IDJA 3SUCA 4YZ0A 4YZQA 2Z8GA 2NSPA 1DBOA 3JURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VSU A;  4AVZ A;  1HG8 A;  4XLE A;  2IQ7 A;  4OJL A;  1BHE A;  4XQF A;  4XOR A;  4U49 A;  3KRG A;  2NTB A;  1X0C A;  1OFL A;  1KCD A;  2VJI A;  2NTQ A;  2X3H A;  2QX3 A;  1O8F A;  2ODL A;  1O8I A;  3GRH A;  4XMY A;  4OJ5 A;  2VJJ A;  3GQ7 A;  4W8S A;  3GQ8 A;  4YZA A;  1OGM X;  1PXZ A;  3UW0 A;  4YEL A;  1IB4 A;  4YZX A;  3VMW A;  1QCX A;  1DBG A;  1PLU A;  2INU A;  4XKV A;  1AIR A;  2NTP A;  4OZZ A;  2NZM A;  4C2L A;  1JTA A;  2INV A;  3B90 A;  4XR6 A;  2X6W A;  2X6Y A;  1OGO X;  4XNF A;  3B8Y A;  4XN3 A;  1QJV A;  4PMH A;  2NT6 A;  4XN0 A;  3GQA A;  3LMW A;  4XLA A;  1O8G A;  1H80 A;  4I84 A;  4XKW A;  2X85 A;  1WMR A;  4NK6 A;  2QY1 A;  1IA5 A;  1CZF A;  3T9G A;  3WWG A;  3B4N A;  4XLC A;  1O8J A;  1BN8 A;  1IDK A;  2X6X A;  1EE6 A;  2NST A;  4URR A;  2UVE A;  2UVF A;  2PEC A;  3EQO A;  2QXZ A;  1OFM A;  4XOP A;  2O0V A;  4YEJ A;  1KCC A;  4XL9 A;  1RWR A;  1JRG A;  4OJ6 A;  1GQ8 A;  4EW9 A;  4Z05 A;  2PYH A;  4W8R A;  3GQ9 A;  3VSV A;  1O8E A;  1O88 A;  2O17 A;  3FY3 A;  1OOC A;  4OJP A;  1RU4 A;  5C1E A;  1O8K A;  3ZSC A;  4XLF A;  2VBM A;  1O8D A;  1VBL A;  2EWE A;  4OZY A;  2PYG A;  4Z06 A;  3VST A;  4XM3 A;  1NHC A;  1O8M A;  2VBE A;  2VBK A;  5AMV A;  4XLH A;  4Z03 A;  2O1D A;  1K5C A;  2NT9 A;  4MR0 A;  4W8T A;  4XOT A;  4MXN A;  1O8L A;  1O8H A;  1RMG A;  1PE9 A;  4U4B A;  4W8Q A;  2O04 A;  2O0W A;  4NK8 A;  4HWV A;  1XG2 A;  4OJO A;  1KTW A;  3VMV A;  3ZPP A;  4XON A;  2BSP A;  5C1C A;  3EQN A;  1IDJ A;  3SUC A;  4YZ0 A;  4YZQ A;  2Z8G A;  2NSP A;  1DBO A;  3JUR A; 
#chains in the Genus database with same CATH topology
 3VSU A;  4AVZ A;  2XTX A;  2XT2 A;  1HG8 A;  4XLE A;  2IQ7 A;  4OJL A;  1BHE A;  1EA0 A;  3SZE A;  4XQF A;  2IOU G;  1QA2 A;  4XOR A;  4U49 A;  3KRG A;  2NTB A;  1X0C A;  1OFL A;  4YCQ A;  5DNS A;  1KCD A;  3BH7 B;  2VJI A;  2NTQ A;  2X3H A;  2QX3 A;  1O8F A;  2ODL A;  1O8I A;  3GRH A;  3LYC A;  4XMY A;  4OJ5 A;  2VJJ A;  3GQ7 A;  4W8S A;  3GQ8 A;  4YC5 A;  1KQ5 A;  4YZA A;  1OGM X;  1PXZ A;  3UW0 A;  4YEL A;  3PSS A;  1IB4 A;  4YZX A;  1EZG A;  2QZA A;  3VMW A;  2INU A;  1DBG A;  1PLU A;  1QCX A;  4XKV A;  1AIR A;  1QQ1 A;  4YDT A;  2NTP A;  2XTW A;  2NZM A;  4OZZ A;  4C2L A;  1JTA A;  2INV A;  3B90 A;  1TYV A;  3TH0 A;  4XR6 A;  2X6W A;  2X6Y A;  3DU1 X;  1K8F A;  1OGO X;  4YEI A;  4JRA C;  4XNF A;  3B8Y A;  4XN3 A;  1QJV A;  1TYX A;  2VFQ A;  3ML3 A;  2NT6 A;  4PMH A;  4XN0 A;  3GQA A;  3LMW A;  3NB2 A;  1O8G A;  1H80 A;  3P4G A;  4I84 A;  2W7Z A;  4XLA A;  4XKW A;  2YUH A;  2X85 A;  1WMR A;  4NK6 A;  1DAB A;  2VFM A;  2QY1 A;  1OFE A;  2BM5 A;  3SYJ A;  1IA5 A;  1CZF A;  2XT4 A;  3T9G A;  3WWG A;  3B4N A;  4XLC A;  3PSZ A;  2O6W A;  1O8J A;  1BN8 A;  1IDK A;  2B0R A;  1TYU A;  2X6X A;  2XC1 A;  1EE6 A;  2NST A;  4URR A;  2UVE A;  2UVF A;  5JLV C;  2PEC A;  3AK5 A;  1WXR A;  3EQO A;  2QXZ A;  1OFM A;  4XOP A;  2O0V A;  4YEJ A;  1KCC A;  4XL9 A;  1K4Z A;  2J8K A;  1RWR A;  1JRG A;  4OJ6 A;  1GQ8 A;  1QRC A;  4V02 C;  4EW9 A;  4Z05 A;  2PYH A;  4OPW A;  4W8R A;  3GQ9 A;  3VSV A;  1O8E A;  1O88 A;  2O17 A;  4KH3 A;  3FY3 A;  5JMC B;  1LM1 A;  1OOC A;  2V5I A;  4OJP A;  1RU4 A;  2QYU A;  3JX8 A;  5C1E A;  1TSP A;  2BX6 A;  2VFN A;  1QRB A;  3NAW A;  1O8K A;  2J8I A;  3ZSC A;  4XLF A;  3H09 A;  2VBM A;  1O8D A;  1QA3 A;  3N90 A;  2F3L A;  1VBL A;  2EWE A;  2VFO A;  4OZY A;  2PYG A;  4Z06 A;  3VST A;  4XM3 A;  1NHC A;  1LLW A;  1O8M A;  2VBE A;  1L1I A;  3SQV A;  2VBK A;  1CLW A;  2BM6 A;  3LJY A;  5AMV A;  4XLH A;  4Z03 A;  2O1D A;  1HF2 A;  1OFD A;  2NT9 A;  4YFO A;  1K5C A;  4MR0 A;  4W8T A;  4XOT A;  3RIQ A;  4MXN A;  1QA1 A;  3PET A;  2BM7 A;  1O8L A;  1O8H A;  1RMG A;  1PE9 A;  3N6Z A;  2XTY A;  4U4B A;  4W8Q A;  2O04 A;  2O0W A;  3SY2 A;  4OM9 A;  4NK8 A;  4HWV A;  1XG2 A;  4OJO A;  1KTW A;  3VMV A;  3ZPP A;  4XON A;  2BSP A;  2VFP A;  5C1C A;  2G0Y A;  3EQN A;  2BM4 A;  1IDJ A;  3SUC A;  1LLZ A;  1TYW A;  3BH6 B;  4YZQ A;  4YZ0 A;  2Z8G A;  2NSP A;  1DBO A;  3JUR A; 
#chains in the Genus database with same CATH homology
 3VSU A;  4AVZ A;  1HG8 A;  4XLE A;  2IQ7 A;  4OJL A;  1BHE A;  4XQF A;  4XOR A;  4U49 A;  3KRG A;  2NTB A;  1X0C A;  1OFL A;  1KCD A;  2VJI A;  2NTQ A;  2X3H A;  2QX3 A;  1O8F A;  2ODL A;  1O8I A;  3GRH A;  4XMY A;  4OJ5 A;  2VJJ A;  3GQ7 A;  4W8S A;  3GQ8 A;  4YZA A;  1OGM X;  1PXZ A;  3UW0 A;  4YEL A;  1IB4 A;  4YZX A;  3VMW A;  1QCX A;  1DBG A;  1PLU A;  2INU A;  4XKV A;  1AIR A;  2NTP A;  4OZZ A;  2NZM A;  4C2L A;  1JTA A;  2INV A;  3B90 A;  4XR6 A;  2X6W A;  2X6Y A;  1OGO X;  4XNF A;  3B8Y A;  4XN3 A;  1QJV A;  4PMH A;  2NT6 A;  4XN0 A;  3GQA A;  3LMW A;  4XLA A;  1O8G A;  1H80 A;  4I84 A;  4XKW A;  2X85 A;  1WMR A;  4NK6 A;  2QY1 A;  1IA5 A;  1CZF A;  3T9G A;  3WWG A;  3B4N A;  4XLC A;  1O8J A;  1BN8 A;  1IDK A;  2X6X A;  1EE6 A;  2NST A;  4URR A;  2UVE A;  2UVF A;  2PEC A;  3EQO A;  2QXZ A;  1OFM A;  4XOP A;  2O0V A;  4YEJ A;  1KCC A;  4XL9 A;  1RWR A;  1JRG A;  4OJ6 A;  1GQ8 A;  4EW9 A;  4Z05 A;  2PYH A;  4W8R A;  3GQ9 A;  3VSV A;  1O8E A;  1O88 A;  2O17 A;  3FY3 A;  1OOC A;  4OJP A;  1RU4 A;  5C1E A;  1O8K A;  3ZSC A;  4XLF A;  2VBM A;  1O8D A;  1VBL A;  2EWE A;  4OZY A;  2PYG A;  4Z06 A;  3VST A;  4XM3 A;  1NHC A;  1O8M A;  2VBE A;  2VBK A;  5AMV A;  4XLH A;  4Z03 A;  2O1D A;  1K5C A;  2NT9 A;  4MR0 A;  4W8T A;  4XOT A;  4MXN A;  1O8L A;  1O8H A;  1RMG A;  1PE9 A;  4U4B A;  4W8Q A;  2O04 A;  2O0W A;  4NK8 A;  4HWV A;  1XG2 A;  4OJO A;  1KTW A;  3VMV A;  3ZPP A;  4XON A;  2BSP A;  5C1C A;  3EQN A;  1IDJ A;  3SUC A;  4YZ0 A;  4YZQ A;  2Z8G A;  2NSP A;  1DBO A;  3JUR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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