1X0CA

Improved crystal structure of isopullulanase from aspergillus niger atcc 9642
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
549
structure length
549
Chain Sequence
b'REFMAVTANNSQLLTWWHNTGEINTQTPVADGNVRQSGLYSVKVQTTPASSSLYYDSFVYLAIPGNGMSDQLQYTQGYNQTQAWTSFLYSHDATVKISRNGSSANSNVVIRPTSLNFPVRYDNQSVYITVPYSPTGYRFSVEFDDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMYPGTILQDVFYHTDDDGLKMYYSNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQAYANAGNNPGIFGAVNNYLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQITVTDFSIEGFTVGNTTITASNAASVGRIDGVDPAYAGSVHYID'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Isopullulanase
publication title Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
pubmed doi rcsb
source organism Aspergillus niger
molecule tags Hydrolase
total genus 181
structure length 549
sequence length 549
chains with identical sequence B
ec nomenclature ec 3.2.1.57: Isopullulanase.
pdb deposition date 2005-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
A PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
A PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1x0cA01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1x0cA02
4W8QA 1KCCA 4U49A 1DBGA 1O8GA 1PLUA 1PXZA 1QJVA 4YZXA 4W8TA 4XMYA 4XL9A 1OGOX 1RWRA 2QX3A 4NK8A 3GQ9A 4OZZA 4Z03A 1BN8A 1NHCA 3B8YA 1CZFA 3GQAA 4OJ6A 1O88A 1OGMX 2VJIA 1O8HA 5C1CA 1AIRA 3VSTA 2X85A 1OFLA 4OZYA 2UVFA 1XG2A 2UVEA 1IB4A 2Z8GA 1PE9A 2O0WA 3GQ8A 4XLCA 1RU4A 2NT6A 2NT9A 2VBKA 1KTWA 2PECA 5C1EA 4XQFA 1O8JA 1O8LA 2O17A 2X6XA 4OJLA 3VMVA 2NTBA 4XOTA 3KRGA 4W8RA 3ZSCA 1GQ8A 4XLHA 1RMGA 4I84A 3JURA 4OJPA 4NK6A 1JRGA 2O1DA 3UW0A 3GRHA 4XLAA 1QCXA 2QY1A 3B4NA 3WWGA 1K5CA 2O04A 2VBEA 2VJJA 1BHEA 1O8DA 2EWEA 2INVA 4AVZA 3FY3A 4OJ5A 3T9GA 4URRA 1HG8A 4U4BA 4XNFA 4XM3A 3GQ7A 1KCDA 2NTPA 1JTAA 2QXZA 1O8IA 3VSUA 4XOPA 4XN0A 2PYGA 1O8KA 2NZMA 4YZ0A 1O8MA 5AMVA 3SUCA 2NTQA 4EW9A 1X0CA 1O8FA 1VBLA 2BSPA 4Z05A 2X6WA 4MR0A 3EQNA 2X6YA 4OJOA 2O0VA 4PMHA 1OOCA 2NSPA 4MXNA 4XONA 4YEJA 1O8EA 4YELA 3ZPPA 1IA5A 4YZAA 3LMWA 4Z06A 3VSVA 4XKVA 1H80A 2NSTA 4XR6A 4XLEA 2VBMA 4W8SA 2X3HA 1DBOA 1WMRA 4XLFA 2PYHA 4XN3A 3VMWA 3B90A 4HWVA 3EQOA 2IQ7A 4XKWA 1OFMA 2INUA 1IDJA 2ODLA 1IDKA 4C2LA 4XORA 4YZQA 1EE6A
chains in the Genus database with same CATH superfamily
3NB2A 2VFQA 4W8QA 1KCCA 4U49A 1DBGA 1O8GA 1EZGA 1PLUA 1PXZA 1QJVA 2BM6A 2IOUG 4YZXA 4W8TA 1QRBA 4XMYA 3N90A 3BH6B 4XL9A 1OGOX 1RWRA 3H09A 1CLWA 2QX3A 4NK8A 3GQ9A 4OZZA 4Z03A 3SY2A 1BN8A 2VFOA 2XT4A 1CZFA 3B8YA 3GQAA 4OJ6A 1NHCA 1OFEA 1O88A 1OGMX 2VJIA 1O8HA 5C1CA 1AIRA 3VSTA 2X85A 1QRCA 1OFLA 1TYWA 4OZYA 2VFPA 2UVFA 1XG2A 2UVEA 1IB4A 2Z8GA 1PE9A 2O0WA 2W7ZA 3GQ8A 4XLCA 1RU4A 2NT6A 2NT9A 2VBKA 2O6WA 3BH7B 4JRAC 1KTWA 2PECA 1LLZA 5C1EA 4XQFA 1O8JA 1O8LA 2O17A 2X6XA 4OJLA 3VMVA 4XORA 2NTBA 4XOTA 4YFOA 3KRGA 2QYUA 2XTXA 4W8RA 3N6ZA 3ZSCA 4YEIA 1GQ8A 1TYXA 4XLHA 1RMGA 4I84A 4YCQA 3JURA 2V5IA 4OJPA 4NK6A 1JRGA 2O1DA 3UW0A 3GRHA 2XTYA 4XLAA 1QCXA 3PSZA 3P4GA 5DNSA 2QY1A 3B4NA 3WWGA 1K5CA 1QA3A 1L1IA 1DABA 2O04A 1HF2A 2VBEA 1OFDA 2VJJA 3PETA 1BHEA 1O8DA 2EWEA 2INVA 4AVZA 3FY3A 3NAWA 4OJ5A 4URRA 3T9GA 1QA1A 4YC5A 1HG8A 2B0RA 2BM7A 4U4BA 1QQ1A 4XM3A 4XNFA 3GQ7A 1KCDA 2NTPA 1JTAA 2QXZA 1O8IA 5JLVC 3AK5A 3VSUA 3JX8A 2F3LA 4XOPA 4XN0A 4KH3A 2PYGA 1O8KA 4YDTA 3ML3A 2NZMA 4YZ0A 1EA0A 1O8MA 5AMVA 3SUCA 1TSPA 2QZAA 1WXRA 2NTQA 4EW9A 1X0CA 1O8FA 1VBLA 2BSPA 2BX6A 5JMCB 4Z05A 2X6WA 4MR0A 3TH0A 1QA2A 3EQNA 2X6YA 4OJOA 2O0VA 4PMHA 3PSSA 2VFNA 1OOCA 2NSPA 4MXNA 4XONA 4YEJA 1O8EA 3SZEA 1TYVA 2VFMA 2J8IA 1LM1A 4YELA 3ZPPA 1IA5A 4YZAA 3LMWA 4Z06A 1LLWA 3VSVA 4XKVA 3LYCA 1H80A 2NSTA 4OM9A 1TYUA 4XR6A 3RIQA 4XLEA 2VBMA 4W8SA 2X3HA 2BM4A 1DBOA 2XC1A 1WMRA 4XLFA 2PYHA 3DU1X 4XN3A 3VMWA 1KQ5A 3B90A 4HWVA 4OPWA 3SYJA 3EQOA 2G0YA 2IQ7A 4XKWA 2BM5A 3LJYA 1OFMA 2XT2A 2INUA 1IDJA 2ODLA 1IDKA 2XTWA 3SQVA 4C2LA 1K8FA 2J8KA 4V02C 4YZQA 1K4ZA 2YUHA 1EE6A
chains in the Genus database with same CATH topology
4W8QA 1KCCA 4U49A 1DBGA 1O8GA 1PLUA 1PXZA 1QJVA 4YZXA 4W8TA 4XMYA 4XL9A 1OGOX 1RWRA 2QX3A 4NK8A 3GQ9A 4OZZA 4Z03A 1BN8A 1NHCA 3B8YA 1CZFA 3GQAA 4OJ6A 1O88A 1OGMX 2VJIA 1O8HA 5C1CA 1AIRA 3VSTA 2X85A 1OFLA 4OZYA 2UVFA 1XG2A 2UVEA 1IB4A 2Z8GA 1PE9A 2O0WA 3GQ8A 4XLCA 1RU4A 2NT6A 2NT9A 2VBKA 1KTWA 2PECA 5C1EA 4XQFA 1O8JA 1O8LA 2O17A 2X6XA 4OJLA 3VMVA 2NTBA 4XOTA 3KRGA 4W8RA 3ZSCA 1GQ8A 4XLHA 1RMGA 4I84A 3JURA 4OJPA 4NK6A 1JRGA 2O1DA 3UW0A 3GRHA 4XLAA 1QCXA 2QY1A 3B4NA 3WWGA 1K5CA 2O04A 2VBEA 2VJJA 1BHEA 1O8DA 2EWEA 2INVA 4AVZA 3FY3A 4OJ5A 3T9GA 4URRA 1HG8A 4U4BA 4XNFA 4XM3A 3GQ7A 1KCDA 2NTPA 1JTAA 2QXZA 1O8IA 3VSUA 4XOPA 4XN0A 2PYGA 1O8KA 2NZMA 4YZ0A 1O8MA 5AMVA 3SUCA 2NTQA 4EW9A 1X0CA 1O8FA 1VBLA 2BSPA 4Z05A 2X6WA 4MR0A 3EQNA 2X6YA 4OJOA 2O0VA 4PMHA 1OOCA 2NSPA 4MXNA 4XONA 4YEJA 1O8EA 4YELA 3ZPPA 1IA5A 4YZAA 3LMWA 4Z06A 3VSVA 4XKVA 1H80A 2NSTA 4XR6A 4XLEA 2VBMA 4W8SA 2X3HA 1DBOA 1WMRA 4XLFA 2PYHA 4XN3A 3VMWA 3B90A 4HWVA 3EQOA 2IQ7A 4XKWA 1OFMA 2INUA 1IDJA 2ODLA 1IDKA 4C2LA 4XORA 4YZQA 1EE6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8Q A;  1KCC A;  4U49 A;  1DBG A;  1O8G A;  1PLU A;  1PXZ A;  1QJV A;  4YZX A;  4W8T A;  4XMY A;  4XL9 A;  1OGO X;  1RWR A;  2QX3 A;  4NK8 A;  3GQ9 A;  4OZZ A;  4Z03 A;  1BN8 A;  1NHC A;  3B8Y A;  1CZF A;  3GQA A;  4OJ6 A;  1O88 A;  1OGM X;  2VJI A;  1O8H A;  5C1C A;  1AIR A;  3VST A;  2X85 A;  1OFL A;  4OZY A;  2UVF A;  1XG2 A;  2UVE A;  1IB4 A;  2Z8G A;  1PE9 A;  2O0W A;  3GQ8 A;  4XLC A;  1RU4 A;  2NT6 A;  2NT9 A;  2VBK A;  1KTW A;  2PEC A;  5C1E A;  4XQF A;  1O8J A;  1O8L A;  2O17 A;  2X6X A;  4OJL A;  3VMV A;  2NTB A;  4XOT A;  3KRG A;  4W8R A;  3ZSC A;  1GQ8 A;  4XLH A;  1RMG A;  4I84 A;  3JUR A;  4OJP A;  4NK6 A;  1JRG A;  2O1D A;  3UW0 A;  3GRH A;  4XLA A;  1QCX A;  2QY1 A;  3B4N A;  3WWG A;  1K5C A;  2O04 A;  2VBE A;  2VJJ A;  1BHE A;  1O8D A;  2EWE A;  2INV A;  4AVZ A;  3FY3 A;  4OJ5 A;  3T9G A;  4URR A;  1HG8 A;  4U4B A;  4XNF A;  4XM3 A;  3GQ7 A;  1KCD A;  2NTP A;  1JTA A;  2QXZ A;  1O8I A;  3VSU A;  4XOP A;  4XN0 A;  2PYG A;  1O8K A;  2NZM A;  4YZ0 A;  1O8M A;  5AMV A;  3SUC A;  2NTQ A;  4EW9 A;  1X0C A;  1O8F A;  1VBL A;  2BSP A;  4Z05 A;  2X6W A;  4MR0 A;  3EQN A;  2X6Y A;  4OJO A;  2O0V A;  4PMH A;  1OOC A;  2NSP A;  4MXN A;  4XON A;  4YEJ A;  1O8E A;  4YEL A;  3ZPP A;  1IA5 A;  4YZA A;  3LMW A;  4Z06 A;  3VSV A;  4XKV A;  1H80 A;  2NST A;  4XR6 A;  4XLE A;  2VBM A;  4W8S A;  2X3H A;  1DBO A;  1WMR A;  4XLF A;  2PYH A;  4XN3 A;  3VMW A;  3B90 A;  4HWV A;  3EQO A;  2IQ7 A;  4XKW A;  1OFM A;  2INU A;  1IDJ A;  2ODL A;  1IDK A;  4C2L A;  4XOR A;  4YZQ A;  1EE6 A; 
#chains in the Genus database with same CATH topology
 3NB2 A;  2VFQ A;  4W8Q A;  1KCC A;  4U49 A;  1DBG A;  1O8G A;  1EZG A;  1PLU A;  1PXZ A;  1QJV A;  2BM6 A;  2IOU G;  4YZX A;  4W8T A;  1QRB A;  4XMY A;  3N90 A;  3BH6 B;  4XL9 A;  1OGO X;  1RWR A;  3H09 A;  1CLW A;  2QX3 A;  4NK8 A;  3GQ9 A;  4OZZ A;  4Z03 A;  3SY2 A;  1BN8 A;  2VFO A;  2XT4 A;  1CZF A;  3B8Y A;  3GQA A;  4OJ6 A;  1NHC A;  1OFE A;  1O88 A;  1OGM X;  2VJI A;  1O8H A;  5C1C A;  1AIR A;  3VST A;  2X85 A;  1QRC A;  1OFL A;  1TYW A;  4OZY A;  2VFP A;  2UVF A;  1XG2 A;  2UVE A;  1IB4 A;  2Z8G A;  1PE9 A;  2O0W A;  2W7Z A;  3GQ8 A;  4XLC A;  1RU4 A;  2NT6 A;  2NT9 A;  2VBK A;  2O6W A;  3BH7 B;  4JRA C;  1KTW A;  2PEC A;  1LLZ A;  5C1E A;  4XQF A;  1O8J A;  1O8L A;  2O17 A;  2X6X A;  4OJL A;  3VMV A;  4XOR A;  2NTB A;  4XOT A;  4YFO A;  3KRG A;  2QYU A;  2XTX A;  4W8R A;  3N6Z A;  3ZSC A;  4YEI A;  1GQ8 A;  1TYX A;  4XLH A;  1RMG A;  4I84 A;  4YCQ A;  3JUR A;  2V5I A;  4OJP A;  4NK6 A;  1JRG A;  2O1D A;  3UW0 A;  3GRH A;  2XTY A;  4XLA A;  1QCX A;  3PSZ A;  3P4G A;  5DNS A;  2QY1 A;  3B4N A;  3WWG A;  1K5C A;  1QA3 A;  1L1I A;  1DAB A;  2O04 A;  1HF2 A;  2VBE A;  1OFD A;  2VJJ A;  3PET A;  1BHE A;  1O8D A;  2EWE A;  2INV A;  4AVZ A;  3FY3 A;  3NAW A;  4OJ5 A;  4URR A;  3T9G A;  1QA1 A;  4YC5 A;  1HG8 A;  2B0R A;  2BM7 A;  4U4B A;  1QQ1 A;  4XM3 A;  4XNF A;  3GQ7 A;  1KCD A;  2NTP A;  1JTA A;  2QXZ A;  1O8I A;  5JLV C;  3AK5 A;  3VSU A;  3JX8 A;  2F3L A;  4XOP A;  4XN0 A;  4KH3 A;  2PYG A;  1O8K A;  4YDT A;  3ML3 A;  2NZM A;  4YZ0 A;  1EA0 A;  1O8M A;  5AMV A;  3SUC A;  1TSP A;  2QZA A;  1WXR A;  2NTQ A;  4EW9 A;  1X0C A;  1O8F A;  1VBL A;  2BSP A;  2BX6 A;  5JMC B;  4Z05 A;  2X6W A;  4MR0 A;  3TH0 A;  1QA2 A;  3EQN A;  2X6Y A;  4OJO A;  2O0V A;  4PMH A;  3PSS A;  2VFN A;  1OOC A;  2NSP A;  4MXN A;  4XON A;  4YEJ A;  1O8E A;  3SZE A;  1TYV A;  2VFM A;  2J8I A;  1LM1 A;  4YEL A;  3ZPP A;  1IA5 A;  4YZA A;  3LMW A;  4Z06 A;  1LLW A;  3VSV A;  4XKV A;  3LYC A;  1H80 A;  2NST A;  4OM9 A;  1TYU A;  4XR6 A;  3RIQ A;  4XLE A;  2VBM A;  4W8S A;  2X3H A;  2BM4 A;  1DBO A;  2XC1 A;  1WMR A;  4XLF A;  2PYH A;  3DU1 X;  4XN3 A;  3VMW A;  1KQ5 A;  3B90 A;  4HWV A;  4OPW A;  3SYJ A;  3EQO A;  2G0Y A;  2IQ7 A;  4XKW A;  2BM5 A;  3LJY A;  1OFM A;  2XT2 A;  2INU A;  1IDJ A;  2ODL A;  1IDK A;  2XTW A;  3SQV A;  4C2L A;  1K8F A;  2J8K A;  4V02 C;  4YZQ A;  1K4Z A;  2YUH A;  1EE6 A; 
#chains in the Genus database with same CATH homology
 4W8Q A;  1KCC A;  4U49 A;  1DBG A;  1O8G A;  1PLU A;  1PXZ A;  1QJV A;  4YZX A;  4W8T A;  4XMY A;  4XL9 A;  1OGO X;  1RWR A;  2QX3 A;  4NK8 A;  3GQ9 A;  4OZZ A;  4Z03 A;  1BN8 A;  1NHC A;  3B8Y A;  1CZF A;  3GQA A;  4OJ6 A;  1O88 A;  1OGM X;  2VJI A;  1O8H A;  5C1C A;  1AIR A;  3VST A;  2X85 A;  1OFL A;  4OZY A;  2UVF A;  1XG2 A;  2UVE A;  1IB4 A;  2Z8G A;  1PE9 A;  2O0W A;  3GQ8 A;  4XLC A;  1RU4 A;  2NT6 A;  2NT9 A;  2VBK A;  1KTW A;  2PEC A;  5C1E A;  4XQF A;  1O8J A;  1O8L A;  2O17 A;  2X6X A;  4OJL A;  3VMV A;  2NTB A;  4XOT A;  3KRG A;  4W8R A;  3ZSC A;  1GQ8 A;  4XLH A;  1RMG A;  4I84 A;  3JUR A;  4OJP A;  4NK6 A;  1JRG A;  2O1D A;  3UW0 A;  3GRH A;  4XLA A;  1QCX A;  2QY1 A;  3B4N A;  3WWG A;  1K5C A;  2O04 A;  2VBE A;  2VJJ A;  1BHE A;  1O8D A;  2EWE A;  2INV A;  4AVZ A;  3FY3 A;  4OJ5 A;  3T9G A;  4URR A;  1HG8 A;  4U4B A;  4XNF A;  4XM3 A;  3GQ7 A;  1KCD A;  2NTP A;  1JTA A;  2QXZ A;  1O8I A;  3VSU A;  4XOP A;  4XN0 A;  2PYG A;  1O8K A;  2NZM A;  4YZ0 A;  1O8M A;  5AMV A;  3SUC A;  2NTQ A;  4EW9 A;  1X0C A;  1O8F A;  1VBL A;  2BSP A;  4Z05 A;  2X6W A;  4MR0 A;  3EQN A;  2X6Y A;  4OJO A;  2O0V A;  4PMH A;  1OOC A;  2NSP A;  4MXN A;  4XON A;  4YEJ A;  1O8E A;  4YEL A;  3ZPP A;  1IA5 A;  4YZA A;  3LMW A;  4Z06 A;  3VSV A;  4XKV A;  1H80 A;  2NST A;  4XR6 A;  4XLE A;  2VBM A;  4W8S A;  2X3H A;  1DBO A;  1WMR A;  4XLF A;  2PYH A;  4XN3 A;  3VMW A;  3B90 A;  4HWV A;  3EQO A;  2IQ7 A;  4XKW A;  1OFM A;  2INU A;  1IDJ A;  2ODL A;  1IDK A;  4C2L A;  4XOR A;  4YZQ A;  1EE6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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