2BM5A

The structure of mfpa (rv3361c, p21 crystal form). the pentapeptide repeat protein from mycobacterium tuberculosis folds as a right- handed quadrilateral beta-helix.
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
183
structure length
183
Chain Sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PENTAPEPTIDE REPEAT FAMILY PROTEIN
publication title A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Pentapeptide repeat protein
total genus 78
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2bm5A00
2J8IA 2W7ZA 3N90A 2G0YA 2F3LA 2BM6A 5JMCB 5JLVC 2BM5A 4JRAC 2BM4A 2BM7A
chains in the Genus database with same CATH superfamily
3GQ8A 2EWEA 2G0YA 4XN0A 3SZEA 4YFOA 2VFQA 4PMHA 1O8IA 2O1DA 1PE9A 1HF2A 4U49A 4U4BA 2XTYA 2INUA 1OOCA 3ML3A 4URRA 4AVZA 1IA5A 1OFDA 1XG2A 1O88A 4OZYA 4XKVA 3VSTA 4Z03A 2V5IA 4OJ6A 1KTWA 1DBGA 4OJOA 3N6ZA 2XT2A 1O8MA 2XC1A 1QQ1A 3B8YA 4I84A 3RIQA 1O8EA 2J8IA 3SY2A 1PLUA 2NTQA 4Z05A 4EW9A 1CZFA 4XLAA 3VMWA 3UW0A 2O17A 2J8KA 2XTWA 1GQ8A 2O04A 2VBMA 1BN8A 3PSZA 4XLCA 4OJ5A 2XTXA 1K5CA 3GRHA 1OFMA 4XMYA 2QYUA 2ODLA 2W7ZA 3KRGA 1O8FA 4XL9A 2Z8GA 1RMGA 1QA2A 4XLFA 1QRCA 4YZAA 4YDTA 1WMRA 1VBLA 3DU1X 1O8KA 1RWRA 1DBOA 3N90A 4OJLA 3EQOA 3PSSA 2X6XA 4JRAC 1AIRA 2BSPA 3JX8A 2X85A 4XLHA 4Z06A 4XLEA 3NAWA 3WWGA 2O0WA 2VJJA 4W8QA 3TH0A 1TYVA 3GQAA 1LLWA 2X6WA 3AK5A 2NT9A 3B90A 1BHEA 4OZZA 3GQ7A 5C1CA 5JLVC 4NK6A 2VBEA 1OGOX 4YZ0A 1O8GA 3BH6B 3EQNA 2BM6A 3LJYA 1DABA 3VSVA 4XR6A 4XONA 4MR0A 3SUCA 2VJIA 1TYUA 1IB4A 3ZPPA 2UVFA 2NTBA 4W8RA 3P4GA 2BM5A 2INVA 4YELA 1PXZA 4YC5A 3GQ9A 4HWVA 2B0RA 4YZXA 1O8HA 5AMVA 1IDJA 1K8FA 1QCXA 2YUHA 2BX6A 1L1IA 4XKWA 2IOUG 4XNFA 4YEIA 4YZQA 5DNSA 1EA0A 3VMVA 2IQ7A 3NB2A 4NK8A 2QXZA 1EZGA 2QZAA 2VFNA 2BM4A 2NTPA 2VBKA 4OM9A 4OJPA 2NSTA 2PYHA 2X3HA 1KQ5A 1LLZA 5C1EA 1OFEA 2PYGA 3H09A 4W8TA 4XOTA 1CLWA 2O0VA 3B4NA 1IDKA 1KCDA 1O8LA 2NZMA 1JRGA 1O8JA 2QY1A 1QA1A 1TSPA 2X6YA 4XORA 3ZSCA 4XN3A 4V02C 1RU4A 4OPWA 3SYJA 2NT6A 1H80A 1HG8A 2UVEA 1NHCA 2VFOA 3LMWA 1EE6A 1OGMX 3BH7B 3FY3A 1TYXA 1WXRA 1K4ZA 4YCQA 2NSPA 2F3LA 2VFMA 1JTAA 2VFPA 4W8SA 1QJVA 4XM3A 3SQVA 1X0CA 3VSUA 4XOPA 3PETA 1TYWA 1O8DA 1QRBA 1LM1A 2O6WA 3JURA 4MXNA 2XT4A 4C2LA 4KH3A 1QA3A 5JMCB 2QX3A 1KCCA 3LYCA 2PECA 3T9GA 1OFLA 2BM7A 4XQFA 4YEJA
chains in the Genus database with same CATH topology
1CLWA 2W7ZA 2G0YA 1TYUA 3SZEA 2VFQA 1QA2A 1QRCA 3P4GA 2BM5A 1HF2A 1QA1A 1TSPA 3ML3A 2B0RA 3N90A 4JRAC 4OJLA 4V02C 4OPWA 3SYJA 1K8FA 2YUHA 2BX6A 2VFOA 3JX8A 2IOUG 3BH7B 1TYXA 2V5IA 1K4ZA 4OJ6A 1WXRA 2VFMA 2F3LA 4OJ5A 3TH0A 1TYVA 3AK5A 4OJOA 3N6ZA 2VFPA 2VFNA 5JLVC 2BM4A 2XC1A 1QQ1A 4OM9A 3RIQA 4OJPA 2J8IA 3PETA 1TYWA 1QRBA 3BH6B 1KQ5A 1QA3A 2BM6A 3LJYA 4KH3A 5JMCB 1DABA 3LYCA 2BM7A 3H09A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J8I A;  2W7Z A;  3N90 A;  2G0Y A;  2F3L A;  2BM6 A;  5JMC B;  5JLV C;  2BM5 A;  4JRA C;  2BM4 A;  2BM7 A; 
#chains in the Genus database with same CATH topology
 3GQ8 A;  2EWE A;  2G0Y A;  4XN0 A;  3SZE A;  4YFO A;  2VFQ A;  4PMH A;  1O8I A;  2O1D A;  1PE9 A;  1HF2 A;  4U49 A;  4U4B A;  2XTY A;  2INU A;  1OOC A;  3ML3 A;  4URR A;  4AVZ A;  1IA5 A;  1OFD A;  1XG2 A;  1O88 A;  4OZY A;  4XKV A;  3VST A;  4Z03 A;  2V5I A;  4OJ6 A;  1KTW A;  1DBG A;  4OJO A;  3N6Z A;  2XT2 A;  1O8M A;  2XC1 A;  1QQ1 A;  3B8Y A;  4I84 A;  3RIQ A;  1O8E A;  2J8I A;  3SY2 A;  1PLU A;  2NTQ A;  4Z05 A;  4EW9 A;  1CZF A;  4XLA A;  3VMW A;  3UW0 A;  2O17 A;  2J8K A;  2XTW A;  1GQ8 A;  2O04 A;  2VBM A;  1BN8 A;  3PSZ A;  4XLC A;  4OJ5 A;  2XTX A;  1K5C A;  3GRH A;  1OFM A;  4XMY A;  2QYU A;  2ODL A;  2W7Z A;  3KRG A;  1O8F A;  4XL9 A;  2Z8G A;  1RMG A;  1QA2 A;  4XLF A;  1QRC A;  4YZA A;  4YDT A;  1WMR A;  1VBL A;  3DU1 X;  1O8K A;  1RWR A;  1DBO A;  3N90 A;  4OJL A;  3EQO A;  3PSS A;  2X6X A;  4JRA C;  1AIR A;  2BSP A;  3JX8 A;  2X85 A;  4XLH A;  4Z06 A;  4XLE A;  3NAW A;  3WWG A;  2O0W A;  2VJJ A;  4W8Q A;  3TH0 A;  1TYV A;  3GQA A;  1LLW A;  2X6W A;  3AK5 A;  2NT9 A;  3B90 A;  1BHE A;  4OZZ A;  3GQ7 A;  5C1C A;  5JLV C;  4NK6 A;  2VBE A;  1OGO X;  4YZ0 A;  1O8G A;  3BH6 B;  3EQN A;  2BM6 A;  3LJY A;  1DAB A;  3VSV A;  4XR6 A;  4XON A;  4MR0 A;  3SUC A;  2VJI A;  1TYU A;  1IB4 A;  3ZPP A;  2UVF A;  2NTB A;  4W8R A;  3P4G A;  2BM5 A;  2INV A;  4YEL A;  1PXZ A;  4YC5 A;  3GQ9 A;  4HWV A;  2B0R A;  4YZX A;  1O8H A;  5AMV A;  1IDJ A;  1K8F A;  1QCX A;  2YUH A;  2BX6 A;  1L1I A;  4XKW A;  2IOU G;  4XNF A;  4YEI A;  4YZQ A;  5DNS A;  1EA0 A;  3VMV A;  2IQ7 A;  3NB2 A;  4NK8 A;  2QXZ A;  1EZG A;  2QZA A;  2VFN A;  2BM4 A;  2NTP A;  2VBK A;  4OM9 A;  4OJP A;  2NST A;  2PYH A;  2X3H A;  1KQ5 A;  1LLZ A;  5C1E A;  1OFE A;  2PYG A;  3H09 A;  4W8T A;  4XOT A;  1CLW A;  2O0V A;  3B4N A;  1IDK A;  1KCD A;  1O8L A;  2NZM A;  1JRG A;  1O8J A;  2QY1 A;  1QA1 A;  1TSP A;  2X6Y A;  4XOR A;  3ZSC A;  4XN3 A;  4V02 C;  1RU4 A;  4OPW A;  3SYJ A;  2NT6 A;  1H80 A;  1HG8 A;  2UVE A;  1NHC A;  2VFO A;  3LMW A;  1EE6 A;  1OGM X;  3BH7 B;  3FY3 A;  1TYX A;  1WXR A;  1K4Z A;  4YCQ A;  2NSP A;  2F3L A;  2VFM A;  1JTA A;  2VFP A;  4W8S A;  1QJV A;  4XM3 A;  3SQV A;  1X0C A;  3VSU A;  4XOP A;  3PET A;  1TYW A;  1O8D A;  1QRB A;  1LM1 A;  2O6W A;  3JUR A;  4MXN A;  2XT4 A;  4C2L A;  4KH3 A;  1QA3 A;  5JMC B;  2QX3 A;  1KCC A;  3LYC A;  2PEC A;  3T9G A;  1OFL A;  2BM7 A;  4XQF A;  4YEJ A; 
#chains in the Genus database with same CATH homology
 1CLW A;  2W7Z A;  2G0Y A;  1TYU A;  3SZE A;  2VFQ A;  1QA2 A;  1QRC A;  3P4G A;  2BM5 A;  1HF2 A;  1QA1 A;  1TSP A;  3ML3 A;  2B0R A;  3N90 A;  4JRA C;  4OJL A;  4V02 C;  4OPW A;  3SYJ A;  1K8F A;  2YUH A;  2BX6 A;  2VFO A;  3JX8 A;  2IOU G;  3BH7 B;  1TYX A;  2V5I A;  1K4Z A;  4OJ6 A;  1WXR A;  2VFM A;  2F3L A;  4OJ5 A;  3TH0 A;  1TYV A;  3AK5 A;  4OJO A;  3N6Z A;  2VFP A;  2VFN A;  5JLV C;  2BM4 A;  2XC1 A;  1QQ1 A;  4OM9 A;  3RIQ A;  4OJP A;  2J8I A;  3PET A;  1TYW A;  1QRB A;  3BH6 B;  1KQ5 A;  1QA3 A;  2BM6 A;  3LJY A;  4KH3 A;  5JMC B;  1DAB A;  3LYC A;  2BM7 A;  3H09 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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