2BM5A

The structure of mfpa (rv3361c, p21 crystal form). the pentapeptide repeat protein from mycobacterium tuberculosis folds as a right- handed quadrilateral beta-helix.
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
183
structure length
183
Chain Sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Pentapeptide repeat protein
source organism Mycobacterium tuberculosis
publication title A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA
pubmed doi rcsb
molecule keywords PENTAPEPTIDE REPEAT FAMILY PROTEIN
total genus 78
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2bm5A00
3N90A 5JMCB 2J8IA 2W7ZA 2F3LA 4JRAC 2BM7A 2G0YA 5JLVC 2BM6A 2BM5A 2BM4A
chains in the Genus database with same CATH superfamily
1WMRA 1NHCA 2O6WA 2X6XA 3KRGA 2PYGA 4W8TA 1K8FA 1LLZA 2J8KA 4URRA 1O8DA 1BN8A 2BM6A 3T9GA 2BM4A 1OOCA 4YFOA 4YEJA 2XT4A 3PSZA 3PSSA 4XONA 2QY1A 4XN0A 1H80A 1O8FA 4KH3A 3B8YA 4OZYA 4XOPA 4YELA 2NTQA 3VSTA 1KCCA 2INUA 3ZSCA 1OGOX 3NB2A 4NK8A 1KTWA 2VFOA 1O8MA 2F3LA 4YEIA 2X6YA 2PYHA 4XLCA 1XG2A 4Z06A 1IDKA 4W8SA 4YZQA 5DNSA 2XTWA 3H09A 2XTXA 3LJYA 3GQ8A 1IB4A 1CLWA 4XLFA 1O8EA 4EW9A 3LMWA 4XQFA 4C2LA 4XLHA 1TYWA 1KQ5A 3N90A 1O8LA 3PETA 2QYUA 1RWRA 4PMHA 2BM7A 1OFMA 1AIRA 1OFEA 3VSUA 2VFNA 2X6WA 1EE6A 2EWEA 4YCQA 4YDTA 3UW0A 2VFPA 5JMCB 5C1EA 2YUHA 3ZPPA 4YZAA 1HF2A 4XR6A 3VMVA 2VFMA 1IA5A 4XORA 2BM5A 5AMVA 3AK5A 4XLEA 2NZMA 1TSPA 4Z03A 4XM3A 1QA2A 4V02C 1OFLA 2O04A 5C1CA 1KCDA 1QA1A 3SQVA 1TYXA 2XTYA 3GQ7A 2O0WA 2BX6A 3SYJA 4OM9A 2QX3A 1WXRA 4YZ0A 4XNFA 2B0RA 2NTBA 2INVA 3N6ZA 4U4BA 4W8QA 1LM1A 4OJPA 2IOUG 2O0VA 1OGMX 1BHEA 1O88A 1TYVA 2W7ZA 4MXNA 4XKWA 2Z8GA 1JTAA 3JURA 4Z05A 3VSVA 2O1DA 2V5IA 3P4GA 4AVZA 1X0CA 2VFQA 2XC1A 2XT2A 1IDJA 1RU4A 4W8RA 3VMWA 3FY3A 1DABA 2IQ7A 4MR0A 2NT9A 1O8JA 1QRBA 3NAWA 1O8HA 1GQ8A 4OJLA 3RIQA 1PXZA 4XMYA 1PE9A 4HWVA 3WWGA 2NT6A 5JLVC 1K4ZA 4OZZA 2PECA 1CZFA 2QZAA 2VBMA 4YZXA 2ODLA 4OPWA 1HG8A 3BH6B 1O8IA 1JRGA 4U49A 1QCXA 2UVEA 1RMGA 3JX8A 2BSPA 3B90A 3GQAA 2O17A 3GQ9A 4XN3A 2J8IA 3GRHA 2UVFA 2NSPA 3SUCA 1DBOA 2NTPA 1K5CA 4I84A 1EA0A 1QQ1A 4XL9A 3SY2A 1QRCA 4XKVA 1O8GA 2VBEA 3ML3A 4YC5A 3LYCA 1QA3A 4JRAC 1QJVA 1LLWA 1TYUA 1OFDA 4OJ6A 1DBGA 3DU1X 1PLUA 3EQNA 3BH7B 2VBKA 4OJOA 2G0YA 3SZEA 1O8KA 3TH0A 2VJJA 3B4NA 4NK6A 3EQOA 2X3HA 1EZGA 2VJIA 4OJ5A 2NSTA 1L1IA 2X85A 1VBLA 4XLAA 2QXZA 4XOTA
chains in the Genus database with same CATH topology
1KQ5A 2IOUG 1TYVA 3N90A 3PETA 2J8IA 2W7ZA 2BM7A 1K8FA 2BM6A 2VFNA 1QQ1A 2BM4A 1QRCA 2V5IA 3P4GA 3ML3A 5JMCB 2VFPA 3LYCA 1QA3A 2YUHA 2VFQA 2XC1A 1TYUA 4JRAC 1HF2A 4KH3A 4OJ6A 2VFMA 1DABA 2BM5A 1QRBA 3AK5A 3BH7B 2VFOA 4OJLA 3RIQA 2F3LA 4OJOA 1TSPA 2G0YA 3SZEA 5JLVC 3TH0A 1K4ZA 4V02C 1QA1A 1QA2A 3H09A 1TYXA 4OPWA 3LJYA 3BH6B 4OJ5A 1CLWA 2BX6A 4OM9A 3SYJA 1WXRA 3JX8A 2B0RA 3N6ZA 1TYWA 4OJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N90 A;  5JMC B;  2J8I A;  2W7Z A;  2F3L A;  4JRA C;  2BM7 A;  2G0Y A;  5JLV C;  2BM6 A;  2BM5 A;  2BM4 A; 
#chains in the Genus database with same CATH topology
 1WMR A;  1NHC A;  2O6W A;  2X6X A;  3KRG A;  2PYG A;  4W8T A;  1K8F A;  1LLZ A;  2J8K A;  4URR A;  1O8D A;  1BN8 A;  2BM6 A;  3T9G A;  2BM4 A;  1OOC A;  4YFO A;  4YEJ A;  2XT4 A;  3PSZ A;  3PSS A;  4XON A;  2QY1 A;  4XN0 A;  1H80 A;  1O8F A;  4KH3 A;  3B8Y A;  4OZY A;  4XOP A;  4YEL A;  2NTQ A;  3VST A;  1KCC A;  2INU A;  3ZSC A;  1OGO X;  3NB2 A;  4NK8 A;  1KTW A;  2VFO A;  1O8M A;  2F3L A;  4YEI A;  2X6Y A;  2PYH A;  4XLC A;  1XG2 A;  4Z06 A;  1IDK A;  4W8S A;  4YZQ A;  5DNS A;  2XTW A;  3H09 A;  2XTX A;  3LJY A;  3GQ8 A;  1IB4 A;  1CLW A;  4XLF A;  1O8E A;  4EW9 A;  3LMW A;  4XQF A;  4C2L A;  4XLH A;  1TYW A;  1KQ5 A;  3N90 A;  1O8L A;  3PET A;  2QYU A;  1RWR A;  4PMH A;  2BM7 A;  1OFM A;  1AIR A;  1OFE A;  3VSU A;  2VFN A;  2X6W A;  1EE6 A;  2EWE A;  4YCQ A;  4YDT A;  3UW0 A;  2VFP A;  5JMC B;  5C1E A;  2YUH A;  3ZPP A;  4YZA A;  1HF2 A;  4XR6 A;  3VMV A;  2VFM A;  1IA5 A;  4XOR A;  2BM5 A;  5AMV A;  3AK5 A;  4XLE A;  2NZM A;  1TSP A;  4Z03 A;  4XM3 A;  1QA2 A;  4V02 C;  1OFL A;  2O04 A;  5C1C A;  1KCD A;  1QA1 A;  3SQV A;  1TYX A;  2XTY A;  3GQ7 A;  2O0W A;  2BX6 A;  3SYJ A;  4OM9 A;  2QX3 A;  1WXR A;  4YZ0 A;  4XNF A;  2B0R A;  2NTB A;  2INV A;  3N6Z A;  4U4B A;  4W8Q A;  1LM1 A;  4OJP A;  2IOU G;  2O0V A;  1OGM X;  1BHE A;  1O88 A;  1TYV A;  2W7Z A;  4MXN A;  4XKW A;  2Z8G A;  1JTA A;  3JUR A;  4Z05 A;  3VSV A;  2O1D A;  2V5I A;  3P4G A;  4AVZ A;  1X0C A;  2VFQ A;  2XC1 A;  2XT2 A;  1IDJ A;  1RU4 A;  4W8R A;  3VMW A;  3FY3 A;  1DAB A;  2IQ7 A;  4MR0 A;  2NT9 A;  1O8J A;  1QRB A;  3NAW A;  1O8H A;  1GQ8 A;  4OJL A;  3RIQ A;  1PXZ A;  4XMY A;  1PE9 A;  4HWV A;  3WWG A;  2NT6 A;  5JLV C;  1K4Z A;  4OZZ A;  2PEC A;  1CZF A;  2QZA A;  2VBM A;  4YZX A;  2ODL A;  4OPW A;  1HG8 A;  3BH6 B;  1O8I A;  1JRG A;  4U49 A;  1QCX A;  2UVE A;  1RMG A;  3JX8 A;  2BSP A;  3B90 A;  3GQA A;  2O17 A;  3GQ9 A;  4XN3 A;  2J8I A;  3GRH A;  2UVF A;  2NSP A;  3SUC A;  1DBO A;  2NTP A;  1K5C A;  4I84 A;  1EA0 A;  1QQ1 A;  4XL9 A;  3SY2 A;  1QRC A;  4XKV A;  1O8G A;  2VBE A;  3ML3 A;  4YC5 A;  3LYC A;  1QA3 A;  4JRA C;  1QJV A;  1LLW A;  1TYU A;  1OFD A;  4OJ6 A;  1DBG A;  3DU1 X;  1PLU A;  3EQN A;  3BH7 B;  2VBK A;  4OJO A;  2G0Y A;  3SZE A;  1O8K A;  3TH0 A;  2VJJ A;  3B4N A;  4NK6 A;  3EQO A;  2X3H A;  1EZG A;  2VJI A;  4OJ5 A;  2NST A;  1L1I A;  2X85 A;  1VBL A;  4XLA A;  2QXZ A;  4XOT A; 
#chains in the Genus database with same CATH homology
 1KQ5 A;  2IOU G;  1TYV A;  3N90 A;  3PET A;  2J8I A;  2W7Z A;  2BM7 A;  1K8F A;  2BM6 A;  2VFN A;  1QQ1 A;  2BM4 A;  1QRC A;  2V5I A;  3P4G A;  3ML3 A;  5JMC B;  2VFP A;  3LYC A;  1QA3 A;  2YUH A;  2VFQ A;  2XC1 A;  1TYU A;  4JRA C;  1HF2 A;  4KH3 A;  4OJ6 A;  2VFM A;  1DAB A;  2BM5 A;  1QRB A;  3AK5 A;  3BH7 B;  2VFO A;  4OJL A;  3RIQ A;  2F3L A;  4OJO A;  1TSP A;  2G0Y A;  3SZE A;  5JLV C;  3TH0 A;  1K4Z A;  4V02 C;  1QA1 A;  1QA2 A;  3H09 A;  1TYX A;  4OPW A;  3LJY A;  3BH6 B;  4OJ5 A;  1CLW A;  2BX6 A;  4OM9 A;  3SYJ A;  1WXR A;  3JX8 A;  2B0R A;  3N6Z A;  1TYW A;  4OJP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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