1GQ8A

Pectin methylesterase from carrot
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
319
structure length
319
Chain Sequence
ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PECTINESTERASE
publication title Crystal Structure of Plant Pectin Methylesterase
pubmed doi rcsb
molecule tags Hydrolase
total genus 122
structure length 319
sequence length 319
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2001-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1gq8A00
2NZMA 4XKVA 1KCCA 1K5CA 4PMHA 3B90A 4XL9A 1BN8A 2VJJA 4XNFA 3GRHA 4OZYA 4U49A 4HWVA 4MXNA 4OJ5A 4OJPA 4XN3A 5C1CA 2QY1A 2NTPA 2NSPA 1PXZA 4EW9A 2NT6A 2IQ7A 1PE9A 4W8QA 4YZXA 1NHCA 3GQ9A 4XOPA 4NK8A 4XORA 2O0WA 4W8RA 1IDKA 2QXZA 3VMVA 4NK6A 3ZPPA 2VBEA 1JRGA 1O8LA 1O8KA 1KCDA 1XG2A 3KRGA 1OFLA 3VSUA 2PECA 4Z05A 1RU4A 1H80A 2O17A 4OJOA 3VMWA 1IA5A 1HG8A 4I84A 1DBOA 1CZFA 4YZ0A 2NT9A 4XR6A 4XLCA 4Z03A 1IB4A 2EWEA 3ZSCA 3B4NA 4URRA 4XLAA 1WMRA 1O8HA 2X6XA 2NSTA 1QCXA 4XM3A 2O1DA 3T9GA 2O04A 2X3HA 5C1EA 1RMGA 4AVZA 4U4BA 3WWGA 1O8FA 4XONA 2VBKA 4XOTA 1O8JA 4XLHA 4YEJA 4XQFA 3GQ7A 2X85A 4XLFA 2NTQA 1BHEA 3B8YA 3FY3A 1VBLA 4XMYA 3GQAA 3SUCA 2VBMA 4YELA 5AMVA 1RWRA 2PYHA 3JURA 1PLUA 4W8SA 2PYGA 4OJ6A 3EQOA 1QJVA 1O8DA 1OOCA 2X6YA 3EQNA 1OFMA 3LMWA 4YZQA 2INUA 1OGOX 2VJIA 2Z8GA 1DBGA 4Z06A 3GQ8A 4XLEA 4XKWA 1IDJA 1OGMX 2BSPA 2UVFA 4W8TA 1O8MA 3VSTA 2QX3A 2UVEA 4MR0A 4YZAA 1GQ8A 1O8EA 4OZZA 1O8IA 1KTWA 2O0VA 1O88A 4XN0A 1X0CA 2ODLA 3VSVA 2X6WA 4C2LA 3UW0A 1JTAA 1EE6A 2NTBA 2INVA 1O8GA 4OJLA 1AIRA
chains in the Genus database with same CATH superfamily
2NTBA 2NZMA 4XKVA 1KCCA 1K5CA 4PMHA 1HF2A 3B90A 4XL9A 1BN8A 2VJJA 3ML3A 4XNFA 2XTXA 2J8IA 3GRHA 4OZYA 4U49A 4OPWA 1QA1A 4HWVA 4MXNA 4OJ5A 4OJPA 4XN3A 5C1CA 1WXRA 2QY1A 2NTPA 4YCQA 3AK5A 3H09A 2NSPA 1PXZA 1TYUA 4EW9A 3NAWA 1LM1A 2NT6A 2BM4A 2IQ7A 2QZAA 1PE9A 4W8QA 4YZXA 1NHCA 2XC1A 3SZEA 3GQ9A 4XOPA 3TH0A 4NK8A 2BX6A 1LLZA 4XORA 2O0WA 5DNSA 4W8RA 1IDKA 4XKWA 3SY2A 1QRCA 2QXZA 3VMVA 4NK6A 3ZPPA 2VBEA 1JRGA 1O8LA 1O8KA 1KCDA 4OM9A 1XG2A 4V02C 3KRGA 1OFLA 3VSUA 2PECA 4Z05A 1RU4A 1H80A 4YC5A 3LYCA 2B0RA 2O17A 3N90A 3NB2A 3PSSA 4OJOA 3VMWA 1IA5A 1HG8A 3VSTA 4I84A 5JMCB 1DBOA 2BM5A 1CZFA 4YZ0A 1L1IA 2NT9A 1DABA 4XR6A 1QQ1A 4XLCA 1EZGA 2XT4A 3BH7B 4Z03A 3SQVA 1IB4A 2EWEA 3ZSCA 3B4NA 4URRA 4XLAA 1WMRA 1O8HA 2X6XA 1OFEA 3PETA 2NSTA 3JX8A 1QCXA 4XM3A 2O1DA 3T9GA 2O04A 1K8FA 1LLWA 2X3HA 3RIQA 2XTWA 5C1EA 2XTYA 4YEIA 1RMGA 1CLWA 4AVZA 2YUHA 4U4BA 3WWGA 1O8FA 4XONA 2V5IA 2VBKA 4XOTA 1TSPA 1O8JA 3N6ZA 4XLHA 4YEJA 2J8KA 2X85A 3GQ7A 4XQFA 2G0YA 2QYUA 1TYWA 2VFNA 4XLFA 2NTQA 1BHEA 3B8YA 3FY3A 1VBLA 1KQ5A 4XMYA 1QA2A 3GQAA 3SUCA 2VBMA 3PSZA 4JRAC 4YELA 2O6WA 5AMVA 1RWRA 2VFPA 1QA3A 2PYHA 3JURA 4YDTA 1PLUA 1K4ZA 4W8SA 2PYGA 4OJ6A 3EQOA 1QJVA 1OFDA 3LJYA 4KH3A 1O8DA 1OOCA 2X6YA 3EQNA 1OFMA 2VFMA 2VFQA 1QRBA 3LMWA 4YZQA 2INUA 3SYJA 1OGOX 2VJIA 2XT2A 2Z8GA 5JLVC 1DBGA 3BH6B 3GQ8A 3P4GA 4Z06A 4XLEA 2BM7A 1IDJA 1OGMX 2BSPA 2UVFA 4W8TA 1O8MA 1TYVA 2IOUG 2QX3A 2F3LA 2UVEA 4MR0A 4YZAA 1GQ8A 1O8EA 4OZZA 1O8IA 1KTWA 1EA0A 4YFOA 2O0VA 1O88A 1TYXA 4XN0A 1X0CA 2ODLA 3VSVA 2BM6A 2X6WA 3DU1X 4C2LA 2VFOA 3UW0A 1JTAA 1EE6A 2INVA 2W7ZA 1O8GA 4OJLA 1AIRA
chains in the Genus database with same CATH topology
2NZMA 4XKVA 1KCCA 1K5CA 4PMHA 3B90A 4XL9A 1BN8A 2VJJA 4XNFA 3GRHA 4OZYA 4U49A 4HWVA 4MXNA 4OJ5A 4OJPA 4XN3A 5C1CA 2QY1A 2NTPA 2NSPA 1PXZA 4EW9A 2NT6A 2IQ7A 1PE9A 4W8QA 4YZXA 1NHCA 3GQ9A 4XOPA 4NK8A 4XORA 2O0WA 4W8RA 1IDKA 2QXZA 3VMVA 4NK6A 3ZPPA 2VBEA 1JRGA 1O8LA 1O8KA 1KCDA 1XG2A 3KRGA 1OFLA 3VSUA 2PECA 4Z05A 1RU4A 1H80A 2O17A 4OJOA 3VMWA 1IA5A 1HG8A 4I84A 1DBOA 1CZFA 4YZ0A 2NT9A 4XR6A 4XLCA 4Z03A 1IB4A 2EWEA 3ZSCA 3B4NA 4URRA 4XLAA 1WMRA 1O8HA 2X6XA 2NSTA 1QCXA 4XM3A 2O1DA 3T9GA 2O04A 2X3HA 5C1EA 1RMGA 4AVZA 4U4BA 3WWGA 1O8FA 4XONA 2VBKA 4XOTA 1O8JA 4XLHA 4YEJA 4XQFA 3GQ7A 2X85A 4XLFA 2NTQA 1BHEA 3B8YA 3FY3A 1VBLA 4XMYA 3GQAA 3SUCA 2VBMA 4YELA 5AMVA 1RWRA 2PYHA 3JURA 1PLUA 4W8SA 2PYGA 4OJ6A 3EQOA 1QJVA 1O8DA 1OOCA 2X6YA 3EQNA 1OFMA 3LMWA 4YZQA 2INUA 1OGOX 2VJIA 2Z8GA 1DBGA 4Z06A 3GQ8A 4XLEA 4XKWA 1IDJA 1OGMX 2BSPA 2UVFA 4W8TA 1O8MA 3VSTA 2QX3A 2UVEA 4MR0A 4YZAA 1GQ8A 1O8EA 4OZZA 1O8IA 1KTWA 2O0VA 1O88A 4XN0A 1X0CA 2ODLA 3VSVA 2X6WA 4C2LA 3UW0A 1JTAA 1EE6A 2NTBA 2INVA 1O8GA 4OJLA 1AIRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NZM A;  4XKV A;  1KCC A;  1K5C A;  4PMH A;  3B90 A;  4XL9 A;  1BN8 A;  2VJJ A;  4XNF A;  3GRH A;  4OZY A;  4U49 A;  4HWV A;  4MXN A;  4OJ5 A;  4OJP A;  4XN3 A;  5C1C A;  2QY1 A;  2NTP A;  2NSP A;  1PXZ A;  4EW9 A;  2NT6 A;  2IQ7 A;  1PE9 A;  4W8Q A;  4YZX A;  1NHC A;  3GQ9 A;  4XOP A;  4NK8 A;  4XOR A;  2O0W A;  4W8R A;  1IDK A;  2QXZ A;  3VMV A;  4NK6 A;  3ZPP A;  2VBE A;  1JRG A;  1O8L A;  1O8K A;  1KCD A;  1XG2 A;  3KRG A;  1OFL A;  3VSU A;  2PEC A;  4Z05 A;  1RU4 A;  1H80 A;  2O17 A;  4OJO A;  3VMW A;  1IA5 A;  1HG8 A;  4I84 A;  1DBO A;  1CZF A;  4YZ0 A;  2NT9 A;  4XR6 A;  4XLC A;  4Z03 A;  1IB4 A;  2EWE A;  3ZSC A;  3B4N A;  4URR A;  4XLA A;  1WMR A;  1O8H A;  2X6X A;  2NST A;  1QCX A;  4XM3 A;  2O1D A;  3T9G A;  2O04 A;  2X3H A;  5C1E A;  1RMG A;  4AVZ A;  4U4B A;  3WWG A;  1O8F A;  4XON A;  2VBK A;  4XOT A;  1O8J A;  4XLH A;  4YEJ A;  4XQF A;  3GQ7 A;  2X85 A;  4XLF A;  2NTQ A;  1BHE A;  3B8Y A;  3FY3 A;  1VBL A;  4XMY A;  3GQA A;  3SUC A;  2VBM A;  4YEL A;  5AMV A;  1RWR A;  2PYH A;  3JUR A;  1PLU A;  4W8S A;  2PYG A;  4OJ6 A;  3EQO A;  1QJV A;  1O8D A;  1OOC A;  2X6Y A;  3EQN A;  1OFM A;  3LMW A;  4YZQ A;  2INU A;  1OGO X;  2VJI A;  2Z8G A;  1DBG A;  4Z06 A;  3GQ8 A;  4XLE A;  4XKW A;  1IDJ A;  1OGM X;  2BSP A;  2UVF A;  4W8T A;  1O8M A;  3VST A;  2QX3 A;  2UVE A;  4MR0 A;  4YZA A;  1GQ8 A;  1O8E A;  4OZZ A;  1O8I A;  1KTW A;  2O0V A;  1O88 A;  4XN0 A;  1X0C A;  2ODL A;  3VSV A;  2X6W A;  4C2L A;  3UW0 A;  1JTA A;  1EE6 A;  2NTB A;  2INV A;  1O8G A;  4OJL A;  1AIR A; 
#chains in the Genus database with same CATH topology
 2NTB A;  2NZM A;  4XKV A;  1KCC A;  1K5C A;  4PMH A;  1HF2 A;  3B90 A;  4XL9 A;  1BN8 A;  2VJJ A;  3ML3 A;  4XNF A;  2XTX A;  2J8I A;  3GRH A;  4OZY A;  4U49 A;  4OPW A;  1QA1 A;  4HWV A;  4MXN A;  4OJ5 A;  4OJP A;  4XN3 A;  5C1C A;  1WXR A;  2QY1 A;  2NTP A;  4YCQ A;  3AK5 A;  3H09 A;  2NSP A;  1PXZ A;  1TYU A;  4EW9 A;  3NAW A;  1LM1 A;  2NT6 A;  2BM4 A;  2IQ7 A;  2QZA A;  1PE9 A;  4W8Q A;  4YZX A;  1NHC A;  2XC1 A;  3SZE A;  3GQ9 A;  4XOP A;  3TH0 A;  4NK8 A;  2BX6 A;  1LLZ A;  4XOR A;  2O0W A;  5DNS A;  4W8R A;  1IDK A;  4XKW A;  3SY2 A;  1QRC A;  2QXZ A;  3VMV A;  4NK6 A;  3ZPP A;  2VBE A;  1JRG A;  1O8L A;  1O8K A;  1KCD A;  4OM9 A;  1XG2 A;  4V02 C;  3KRG A;  1OFL A;  3VSU A;  2PEC A;  4Z05 A;  1RU4 A;  1H80 A;  4YC5 A;  3LYC A;  2B0R A;  2O17 A;  3N90 A;  3NB2 A;  3PSS A;  4OJO A;  3VMW A;  1IA5 A;  1HG8 A;  3VST A;  4I84 A;  5JMC B;  1DBO A;  2BM5 A;  1CZF A;  4YZ0 A;  1L1I A;  2NT9 A;  1DAB A;  4XR6 A;  1QQ1 A;  4XLC A;  1EZG A;  2XT4 A;  3BH7 B;  4Z03 A;  3SQV A;  1IB4 A;  2EWE A;  3ZSC A;  3B4N A;  4URR A;  4XLA A;  1WMR A;  1O8H A;  2X6X A;  1OFE A;  3PET A;  2NST A;  3JX8 A;  1QCX A;  4XM3 A;  2O1D A;  3T9G A;  2O04 A;  1K8F A;  1LLW A;  2X3H A;  3RIQ A;  2XTW A;  5C1E A;  2XTY A;  4YEI A;  1RMG A;  1CLW A;  4AVZ A;  2YUH A;  4U4B A;  3WWG A;  1O8F A;  4XON A;  2V5I A;  2VBK A;  4XOT A;  1TSP A;  1O8J A;  3N6Z A;  4XLH A;  4YEJ A;  2J8K A;  2X85 A;  3GQ7 A;  4XQF A;  2G0Y A;  2QYU A;  1TYW A;  2VFN A;  4XLF A;  2NTQ A;  1BHE A;  3B8Y A;  3FY3 A;  1VBL A;  1KQ5 A;  4XMY A;  1QA2 A;  3GQA A;  3SUC A;  2VBM A;  3PSZ A;  4JRA C;  4YEL A;  2O6W A;  5AMV A;  1RWR A;  2VFP A;  1QA3 A;  2PYH A;  3JUR A;  4YDT A;  1PLU A;  1K4Z A;  4W8S A;  2PYG A;  4OJ6 A;  3EQO A;  1QJV A;  1OFD A;  3LJY A;  4KH3 A;  1O8D A;  1OOC A;  2X6Y A;  3EQN A;  1OFM A;  2VFM A;  2VFQ A;  1QRB A;  3LMW A;  4YZQ A;  2INU A;  3SYJ A;  1OGO X;  2VJI A;  2XT2 A;  2Z8G A;  5JLV C;  1DBG A;  3BH6 B;  3GQ8 A;  3P4G A;  4Z06 A;  4XLE A;  2BM7 A;  1IDJ A;  1OGM X;  2BSP A;  2UVF A;  4W8T A;  1O8M A;  1TYV A;  2IOU G;  2QX3 A;  2F3L A;  2UVE A;  4MR0 A;  4YZA A;  1GQ8 A;  1O8E A;  4OZZ A;  1O8I A;  1KTW A;  1EA0 A;  4YFO A;  2O0V A;  1O88 A;  1TYX A;  4XN0 A;  1X0C A;  2ODL A;  3VSV A;  2BM6 A;  2X6W A;  3DU1 X;  4C2L A;  2VFO A;  3UW0 A;  1JTA A;  1EE6 A;  2INV A;  2W7Z A;  1O8G A;  4OJL A;  1AIR A; 
#chains in the Genus database with same CATH homology
 2NZM A;  4XKV A;  1KCC A;  1K5C A;  4PMH A;  3B90 A;  4XL9 A;  1BN8 A;  2VJJ A;  4XNF A;  3GRH A;  4OZY A;  4U49 A;  4HWV A;  4MXN A;  4OJ5 A;  4OJP A;  4XN3 A;  5C1C A;  2QY1 A;  2NTP A;  2NSP A;  1PXZ A;  4EW9 A;  2NT6 A;  2IQ7 A;  1PE9 A;  4W8Q A;  4YZX A;  1NHC A;  3GQ9 A;  4XOP A;  4NK8 A;  4XOR A;  2O0W A;  4W8R A;  1IDK A;  2QXZ A;  3VMV A;  4NK6 A;  3ZPP A;  2VBE A;  1JRG A;  1O8L A;  1O8K A;  1KCD A;  1XG2 A;  3KRG A;  1OFL A;  3VSU A;  2PEC A;  4Z05 A;  1RU4 A;  1H80 A;  2O17 A;  4OJO A;  3VMW A;  1IA5 A;  1HG8 A;  4I84 A;  1DBO A;  1CZF A;  4YZ0 A;  2NT9 A;  4XR6 A;  4XLC A;  4Z03 A;  1IB4 A;  2EWE A;  3ZSC A;  3B4N A;  4URR A;  4XLA A;  1WMR A;  1O8H A;  2X6X A;  2NST A;  1QCX A;  4XM3 A;  2O1D A;  3T9G A;  2O04 A;  2X3H A;  5C1E A;  1RMG A;  4AVZ A;  4U4B A;  3WWG A;  1O8F A;  4XON A;  2VBK A;  4XOT A;  1O8J A;  4XLH A;  4YEJ A;  4XQF A;  3GQ7 A;  2X85 A;  4XLF A;  2NTQ A;  1BHE A;  3B8Y A;  3FY3 A;  1VBL A;  4XMY A;  3GQA A;  3SUC A;  2VBM A;  4YEL A;  5AMV A;  1RWR A;  2PYH A;  3JUR A;  1PLU A;  4W8S A;  2PYG A;  4OJ6 A;  3EQO A;  1QJV A;  1O8D A;  1OOC A;  2X6Y A;  3EQN A;  1OFM A;  3LMW A;  4YZQ A;  2INU A;  1OGO X;  2VJI A;  2Z8G A;  1DBG A;  4Z06 A;  3GQ8 A;  4XLE A;  4XKW A;  1IDJ A;  1OGM X;  2BSP A;  2UVF A;  4W8T A;  1O8M A;  3VST A;  2QX3 A;  2UVE A;  4MR0 A;  4YZA A;  1GQ8 A;  1O8E A;  4OZZ A;  1O8I A;  1KTW A;  2O0V A;  1O88 A;  4XN0 A;  1X0C A;  2ODL A;  3VSV A;  2X6W A;  4C2L A;  3UW0 A;  1JTA A;  1EE6 A;  2NTB A;  2INV A;  1O8G A;  4OJL A;  1AIR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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