1GQ8A

Pectin methylesterase from carrot
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
319
structure length
319
Chain Sequence
ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
publication title Crystal Structure of Plant Pectin Methylesterase
pubmed doi rcsb
molecule keywords PECTINESTERASE
total genus 122
structure length 319
sequence length 319
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2001-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1gq8A00
4Z06A 2INUA 1O8LA 3VSVA 1NHCA 1O8GA 1OGMX 2O04A 4C2LA 3VMWA 2UVEA 1O8DA 2X85A 4OZZA 4W8QA 1O8FA 4YZAA 1VBLA 3UW0A 3KRGA 4OJLA 4Z05A 2X6WA 3FY3A 1PE9A 4OJ5A 2PECA 1OFMA 4AVZA 4U49A 4NK8A 1AIRA 2VBEA 2NT9A 1EE6A 4XR6A 4XOTA 2VBKA 1PLUA 1XG2A 4XLFA 1BN8A 3GQ7A 2O17A 3LMWA 1O8JA 1O8EA 4HWVA 3GQ9A 4XKVA 4YELA 1H80A 1PXZA 1KCDA 4OJ6A 4NK6A 1GQ8A 2NTQA 4U4BA 4XLAA 4YZQA 4XL9A 1JTAA 4YZ0A 3JURA 4MXNA 4URRA 2X3HA 2ODLA 4W8TA 2NSPA 1IB4A 1WMRA 1X0CA 2QY1A 3EQOA 4OJPA 3T9GA 1RWRA 4XN0A 2NTBA 2NT6A 4XQFA 4XOPA 2NTPA 4XN3A 4PMHA 1HG8A 3GRHA 3B8YA 4XKWA 2QX3A 1DBGA 1DBOA 3VMVA 2O1DA 3WWGA 1JRGA 4YZXA 2QXZA 4XNFA 1KCCA 4YEJA 1O88A 4XONA 1O8KA 1BHEA 4Z03A 4EW9A 1O8IA 4XM3A 2X6YA 3SUCA 1RU4A 1IA5A 1OOCA 1CZFA 4XLCA 4OJOA 1O8HA 3GQAA 3B4NA 1OGOX 2PYGA 3GQ8A 2EWEA 1KTWA 2O0WA 5AMVA 3EQNA 2VBMA 4I84A 4XLEA 4OZYA 3B90A 1O8MA 1IDKA 2O0VA 2UVFA 5C1EA 5C1CA 1IDJA 2Z8GA 4XORA 2INVA 4W8SA 2NSTA 1OFLA 1QJVA 4XLHA 2IQ7A 4XMYA 2VJJA 4MR0A 2PYHA 2X6XA 1K5CA 2NZMA 2VJIA 2BSPA 3ZSCA 4W8RA 1QCXA 3VSUA 1RMGA 3VSTA 3ZPPA
chains in the Genus database with same CATH superfamily
1L1IA 4Z06A 2W7ZA 2INUA 1O8LA 3VSVA 1K8FA 1NHCA 2O6WA 1O8GA 1WXRA 1OGMX 2O04A 1QRCA 2BM7A 4YCQA 4C2LA 1OFEA 4YFOA 3VMWA 2UVEA 1O8DA 2X85A 2VFPA 2XT2A 4OZZA 4W8QA 1QRBA 1O8FA 1LM1A 4YZAA 1VBLA 3UW0A 3KRGA 2XTXA 4OJLA 4Z05A 2X6WA 3FY3A 3N90A 1PE9A 2QZAA 4OJ5A 1EZGA 2PECA 3SYJA 1OFMA 3ML3A 4U49A 3SY2A 4AVZA 4NK8A 1AIRA 2VBEA 2NT9A 1EE6A 2XTYA 4XR6A 4XOTA 2VBKA 1QA2A 5JLVC 1PLUA 1XG2A 4OPWA 1TYUA 3BH6B 4XLFA 3SZEA 2VFQA 3PSZA 1BN8A 3GQ7A 2IOUG 2O17A 3LMWA 1O8JA 1TYVA 1O8EA 4HWVA 3GQ9A 4XKVA 4YELA 1H80A 1PXZA 1KCDA 3BH7B 4OJ6A 4NK6A 1GQ8A 2BX6A 2NTQA 4U4BA 4XLAA 4YZQA 4XL9A 1JTAA 3PSSA 1CLWA 1TYXA 4YZ0A 3JURA 3TH0A 2J8KA 2QYUA 4MXNA 4URRA 2X3HA 2ODLA 4OM9A 1DABA 4W8TA 2NSPA 1IB4A 1HF2A 2XT4A 1WMRA 4KH3A 1X0CA 2QY1A 3EQOA 4OJPA 2V5IA 1RWRA 3T9GA 3LJYA 4XN0A 2NTBA 2NT6A 4XQFA 3RIQA 4XOPA 2BM6A 2NTPA 4XN3A 3JX8A 1HG8A 4PMHA 2VFOA 3GRHA 3N6ZA 3B8YA 1QQ1A 4XKWA 2YUHA 3LYCA 2QX3A 1DBGA 1DBOA 3VMVA 2O1DA 1OFDA 3WWGA 1JRGA 4YZXA 5DNSA 2QXZA 4XNFA 4YDTA 4YEIA 1KCCA 1TSPA 4YEJA 1O88A 1EA0A 4XONA 1O8KA 1BHEA 2VFNA 4Z03A 5JMCB 4EW9A 1O8IA 4XM3A 2X6YA 3SUCA 1TYWA 1RU4A 3PETA 1IA5A 1K4ZA 1OOCA 2VFMA 2XTWA 1CZFA 4XLCA 4OJOA 1O8HA 3NB2A 3GQAA 3B4NA 1QA1A 1LLWA 1OGOX 2PYGA 3GQ8A 4YC5A 2EWEA 1KTWA 2O0WA 5AMVA 3H09A 1LLZA 3EQNA 2VBMA 4I84A 4XLEA 3AK5A 4OZYA 3B90A 1O8MA 2B0RA 1IDKA 3DU1X 2O0VA 2UVFA 3NAWA 5C1EA 5C1CA 1IDJA 2Z8GA 4XORA 2BM5A 2INVA 4JRAC 2NSTA 4W8SA 1OFLA 1QJVA 4XLHA 2IQ7A 4XMYA 2VJJA 4MR0A 1QA3A 2PYHA 2X6XA 2F3LA 2XC1A 3P4GA 1K5CA 1KQ5A 2NZMA 2VJIA 2BSPA 3ZSCA 4W8RA 4V02C 2J8IA 1QCXA 3VSUA 1RMGA 2G0YA 3VSTA 2BM4A 3SQVA 3ZPPA
chains in the Genus database with same CATH topology
4Z06A 2INUA 1O8LA 3VSVA 1NHCA 1O8GA 1OGMX 2O04A 4C2LA 3VMWA 2UVEA 1O8DA 2X85A 4OZZA 4W8QA 1O8FA 4YZAA 1VBLA 3UW0A 3KRGA 4OJLA 4Z05A 2X6WA 3FY3A 1PE9A 4OJ5A 2PECA 1OFMA 4AVZA 4U49A 4NK8A 1AIRA 2VBEA 2NT9A 1EE6A 4XR6A 4XOTA 2VBKA 1PLUA 1XG2A 4XLFA 1BN8A 3GQ7A 2O17A 3LMWA 1O8JA 1O8EA 4HWVA 3GQ9A 4XKVA 4YELA 1H80A 1PXZA 1KCDA 4OJ6A 4NK6A 1GQ8A 2NTQA 4U4BA 4XLAA 4YZQA 4XL9A 1JTAA 4YZ0A 3JURA 4MXNA 4URRA 2X3HA 2ODLA 4W8TA 2NSPA 1IB4A 1WMRA 1X0CA 2QY1A 3EQOA 4OJPA 3T9GA 1RWRA 4XN0A 2NTBA 2NT6A 4XQFA 4XOPA 2NTPA 4XN3A 4PMHA 1HG8A 3GRHA 3B8YA 4XKWA 2QX3A 1DBGA 1DBOA 3VMVA 2O1DA 3WWGA 1JRGA 4YZXA 2QXZA 4XNFA 1KCCA 4YEJA 1O88A 4XONA 1O8KA 1BHEA 4Z03A 4EW9A 1O8IA 4XM3A 2X6YA 3SUCA 1RU4A 1IA5A 1OOCA 1CZFA 4XLCA 4OJOA 1O8HA 3GQAA 3B4NA 1OGOX 2PYGA 3GQ8A 2EWEA 1KTWA 2O0WA 5AMVA 3EQNA 2VBMA 4I84A 4XLEA 4OZYA 3B90A 1O8MA 1IDKA 2O0VA 2UVFA 5C1EA 5C1CA 1IDJA 2Z8GA 4XORA 2INVA 4W8SA 2NSTA 1OFLA 1QJVA 4XLHA 2IQ7A 4XMYA 2VJJA 4MR0A 2PYHA 2X6XA 1K5CA 2NZMA 2VJIA 2BSPA 3ZSCA 4W8RA 1QCXA 3VSUA 1RMGA 3VSTA 3ZPPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z06 A;  2INU A;  1O8L A;  3VSV A;  1NHC A;  1O8G A;  1OGM X;  2O04 A;  4C2L A;  3VMW A;  2UVE A;  1O8D A;  2X85 A;  4OZZ A;  4W8Q A;  1O8F A;  4YZA A;  1VBL A;  3UW0 A;  3KRG A;  4OJL A;  4Z05 A;  2X6W A;  3FY3 A;  1PE9 A;  4OJ5 A;  2PEC A;  1OFM A;  4AVZ A;  4U49 A;  4NK8 A;  1AIR A;  2VBE A;  2NT9 A;  1EE6 A;  4XR6 A;  4XOT A;  2VBK A;  1PLU A;  1XG2 A;  4XLF A;  1BN8 A;  3GQ7 A;  2O17 A;  3LMW A;  1O8J A;  1O8E A;  4HWV A;  3GQ9 A;  4XKV A;  4YEL A;  1H80 A;  1PXZ A;  1KCD A;  4OJ6 A;  4NK6 A;  1GQ8 A;  2NTQ A;  4U4B A;  4XLA A;  4YZQ A;  4XL9 A;  1JTA A;  4YZ0 A;  3JUR A;  4MXN A;  4URR A;  2X3H A;  2ODL A;  4W8T A;  2NSP A;  1IB4 A;  1WMR A;  1X0C A;  2QY1 A;  3EQO A;  4OJP A;  3T9G A;  1RWR A;  4XN0 A;  2NTB A;  2NT6 A;  4XQF A;  4XOP A;  2NTP A;  4XN3 A;  4PMH A;  1HG8 A;  3GRH A;  3B8Y A;  4XKW A;  2QX3 A;  1DBG A;  1DBO A;  3VMV A;  2O1D A;  3WWG A;  1JRG A;  4YZX A;  2QXZ A;  4XNF A;  1KCC A;  4YEJ A;  1O88 A;  4XON A;  1O8K A;  1BHE A;  4Z03 A;  4EW9 A;  1O8I A;  4XM3 A;  2X6Y A;  3SUC A;  1RU4 A;  1IA5 A;  1OOC A;  1CZF A;  4XLC A;  4OJO A;  1O8H A;  3GQA A;  3B4N A;  1OGO X;  2PYG A;  3GQ8 A;  2EWE A;  1KTW A;  2O0W A;  5AMV A;  3EQN A;  2VBM A;  4I84 A;  4XLE A;  4OZY A;  3B90 A;  1O8M A;  1IDK A;  2O0V A;  2UVF A;  5C1E A;  5C1C A;  1IDJ A;  2Z8G A;  4XOR A;  2INV A;  4W8S A;  2NST A;  1OFL A;  1QJV A;  4XLH A;  2IQ7 A;  4XMY A;  2VJJ A;  4MR0 A;  2PYH A;  2X6X A;  1K5C A;  2NZM A;  2VJI A;  2BSP A;  3ZSC A;  4W8R A;  1QCX A;  3VSU A;  1RMG A;  3VST A;  3ZPP A; 
#chains in the Genus database with same CATH topology
 1L1I A;  4Z06 A;  2W7Z A;  2INU A;  1O8L A;  3VSV A;  1K8F A;  1NHC A;  2O6W A;  1O8G A;  1WXR A;  1OGM X;  2O04 A;  1QRC A;  2BM7 A;  4YCQ A;  4C2L A;  1OFE A;  4YFO A;  3VMW A;  2UVE A;  1O8D A;  2X85 A;  2VFP A;  2XT2 A;  4OZZ A;  4W8Q A;  1QRB A;  1O8F A;  1LM1 A;  4YZA A;  1VBL A;  3UW0 A;  3KRG A;  2XTX A;  4OJL A;  4Z05 A;  2X6W A;  3FY3 A;  3N90 A;  1PE9 A;  2QZA A;  4OJ5 A;  1EZG A;  2PEC A;  3SYJ A;  1OFM A;  3ML3 A;  4U49 A;  3SY2 A;  4AVZ A;  4NK8 A;  1AIR A;  2VBE A;  2NT9 A;  1EE6 A;  2XTY A;  4XR6 A;  4XOT A;  2VBK A;  1QA2 A;  5JLV C;  1PLU A;  1XG2 A;  4OPW A;  1TYU A;  3BH6 B;  4XLF A;  3SZE A;  2VFQ A;  3PSZ A;  1BN8 A;  3GQ7 A;  2IOU G;  2O17 A;  3LMW A;  1O8J A;  1TYV A;  1O8E A;  4HWV A;  3GQ9 A;  4XKV A;  4YEL A;  1H80 A;  1PXZ A;  1KCD A;  3BH7 B;  4OJ6 A;  4NK6 A;  1GQ8 A;  2BX6 A;  2NTQ A;  4U4B A;  4XLA A;  4YZQ A;  4XL9 A;  1JTA A;  3PSS A;  1CLW A;  1TYX A;  4YZ0 A;  3JUR A;  3TH0 A;  2J8K A;  2QYU A;  4MXN A;  4URR A;  2X3H A;  2ODL A;  4OM9 A;  1DAB A;  4W8T A;  2NSP A;  1IB4 A;  1HF2 A;  2XT4 A;  1WMR A;  4KH3 A;  1X0C A;  2QY1 A;  3EQO A;  4OJP A;  2V5I A;  1RWR A;  3T9G A;  3LJY A;  4XN0 A;  2NTB A;  2NT6 A;  4XQF A;  3RIQ A;  4XOP A;  2BM6 A;  2NTP A;  4XN3 A;  3JX8 A;  1HG8 A;  4PMH A;  2VFO A;  3GRH A;  3N6Z A;  3B8Y A;  1QQ1 A;  4XKW A;  2YUH A;  3LYC A;  2QX3 A;  1DBG A;  1DBO A;  3VMV A;  2O1D A;  1OFD A;  3WWG A;  1JRG A;  4YZX A;  5DNS A;  2QXZ A;  4XNF A;  4YDT A;  4YEI A;  1KCC A;  1TSP A;  4YEJ A;  1O88 A;  1EA0 A;  4XON A;  1O8K A;  1BHE A;  2VFN A;  4Z03 A;  5JMC B;  4EW9 A;  1O8I A;  4XM3 A;  2X6Y A;  3SUC A;  1TYW A;  1RU4 A;  3PET A;  1IA5 A;  1K4Z A;  1OOC A;  2VFM A;  2XTW A;  1CZF A;  4XLC A;  4OJO A;  1O8H A;  3NB2 A;  3GQA A;  3B4N A;  1QA1 A;  1LLW A;  1OGO X;  2PYG A;  3GQ8 A;  4YC5 A;  2EWE A;  1KTW A;  2O0W A;  5AMV A;  3H09 A;  1LLZ A;  3EQN A;  2VBM A;  4I84 A;  4XLE A;  3AK5 A;  4OZY A;  3B90 A;  1O8M A;  2B0R A;  1IDK A;  3DU1 X;  2O0V A;  2UVF A;  3NAW A;  5C1E A;  5C1C A;  1IDJ A;  2Z8G A;  4XOR A;  2BM5 A;  2INV A;  4JRA C;  2NST A;  4W8S A;  1OFL A;  1QJV A;  4XLH A;  2IQ7 A;  4XMY A;  2VJJ A;  4MR0 A;  1QA3 A;  2PYH A;  2X6X A;  2F3L A;  2XC1 A;  3P4G A;  1K5C A;  1KQ5 A;  2NZM A;  2VJI A;  2BSP A;  3ZSC A;  4W8R A;  4V02 C;  2J8I A;  1QCX A;  3VSU A;  1RMG A;  2G0Y A;  3VST A;  2BM4 A;  3SQV A;  3ZPP A; 
#chains in the Genus database with same CATH homology
 4Z06 A;  2INU A;  1O8L A;  3VSV A;  1NHC A;  1O8G A;  1OGM X;  2O04 A;  4C2L A;  3VMW A;  2UVE A;  1O8D A;  2X85 A;  4OZZ A;  4W8Q A;  1O8F A;  4YZA A;  1VBL A;  3UW0 A;  3KRG A;  4OJL A;  4Z05 A;  2X6W A;  3FY3 A;  1PE9 A;  4OJ5 A;  2PEC A;  1OFM A;  4AVZ A;  4U49 A;  4NK8 A;  1AIR A;  2VBE A;  2NT9 A;  1EE6 A;  4XR6 A;  4XOT A;  2VBK A;  1PLU A;  1XG2 A;  4XLF A;  1BN8 A;  3GQ7 A;  2O17 A;  3LMW A;  1O8J A;  1O8E A;  4HWV A;  3GQ9 A;  4XKV A;  4YEL A;  1H80 A;  1PXZ A;  1KCD A;  4OJ6 A;  4NK6 A;  1GQ8 A;  2NTQ A;  4U4B A;  4XLA A;  4YZQ A;  4XL9 A;  1JTA A;  4YZ0 A;  3JUR A;  4MXN A;  4URR A;  2X3H A;  2ODL A;  4W8T A;  2NSP A;  1IB4 A;  1WMR A;  1X0C A;  2QY1 A;  3EQO A;  4OJP A;  3T9G A;  1RWR A;  4XN0 A;  2NTB A;  2NT6 A;  4XQF A;  4XOP A;  2NTP A;  4XN3 A;  4PMH A;  1HG8 A;  3GRH A;  3B8Y A;  4XKW A;  2QX3 A;  1DBG A;  1DBO A;  3VMV A;  2O1D A;  3WWG A;  1JRG A;  4YZX A;  2QXZ A;  4XNF A;  1KCC A;  4YEJ A;  1O88 A;  4XON A;  1O8K A;  1BHE A;  4Z03 A;  4EW9 A;  1O8I A;  4XM3 A;  2X6Y A;  3SUC A;  1RU4 A;  1IA5 A;  1OOC A;  1CZF A;  4XLC A;  4OJO A;  1O8H A;  3GQA A;  3B4N A;  1OGO X;  2PYG A;  3GQ8 A;  2EWE A;  1KTW A;  2O0W A;  5AMV A;  3EQN A;  2VBM A;  4I84 A;  4XLE A;  4OZY A;  3B90 A;  1O8M A;  1IDK A;  2O0V A;  2UVF A;  5C1E A;  5C1C A;  1IDJ A;  2Z8G A;  4XOR A;  2INV A;  4W8S A;  2NST A;  1OFL A;  1QJV A;  4XLH A;  2IQ7 A;  4XMY A;  2VJJ A;  4MR0 A;  2PYH A;  2X6X A;  1K5C A;  2NZM A;  2VJI A;  2BSP A;  3ZSC A;  4W8R A;  1QCX A;  3VSU A;  1RMG A;  3VST A;  3ZPP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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