1O8GA

Pectate lyase c from erwinia chrysanthemi at ph 9.5 with 5mm ca2+
Total Genus 135
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
352
structure length
352
Chain Sequence
ATDTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKLPGYAGVGKNLATLTSTAC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Erwinia chrysanthemi
publication title Characterization and Implications of Ca2+ Binding to Pectate Lyase C
pubmed doi rcsb
molecule keywords PECTATE LYASE C
total genus 135
structure length 352
sequence length 352
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2002-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1o8gA00
2O0VA 3KRGA 1OFMA 4OJPA 4XR6A 2X6WA 1AIRA 3VSUA 3GQAA 1RU4A 2NT6A 4PMHA 4OJ6A 4XLCA 4XM3A 1IDJA 3GRHA 1O8DA 2Z8GA 3B8YA 4XNFA 3ZPPA 1O8FA 1PLUA 4YELA 1O8GA 1BN8A 3B4NA 1JRGA 4XN3A 4Z05A 1H80A 1O8HA 2QY1A 1XG2A 1BHEA 1O8MA 2VBEA 1VBLA 4OJ5A 4MXNA 4NK6A 3VSTA 4Z03A 2VBMA 4XMYA 2VJIA 2ODLA 1O8KA 2PYGA 2VBKA 4OZZA 4Z06A 2X3HA 3WWGA 3GQ9A 3JURA 4XOPA 4AVZA 1OOCA 4XKVA 3GQ8A 4XORA 2O1DA 2X6YA 1O8LA 4XN0A 4XQFA 2NTQA 4YZAA 2NTPA 1IDKA 4XLEA 5C1CA 1IB4A 4XOTA 2BSPA 1O8IA 3VSVA 2UVFA 4C2LA 4XLFA 1DBGA 2NSPA 4EW9A 2NZMA 2INVA 1K5CA 4YEJA 1PXZA 3ZSCA 1PE9A 4HWVA 1NHCA 3SUCA 1RMGA 1O8JA 5AMVA 2QX3A 2EWEA 1HG8A 2PECA 2X6XA 1DBOA 1KCCA 2O17A 2QXZA 3VMWA 4YZ0A 2UVEA 1X0CA 2VJJA 4NK8A 4W8QA 3UW0A 1QCXA 1EE6A 4W8SA 3EQOA 2X85A 2IQ7A 4XKWA 4XLHA 1WMRA 2NT9A 1KTWA 1RWRA 3GQ7A 4OZYA 1GQ8A 4U49A 4YZXA 4OJOA 4U4BA 2INUA 2NTBA 4OJLA 4XLAA 4XL9A 3EQNA 3FY3A 2PYHA 4MR0A 3T9GA 3VMVA 1CZFA 4YZQA 1O88A 1JTAA 4W8RA 2O04A 4XONA 4I84A 1IA5A 4W8TA 4URRA 1KCDA 1O8EA 5C1EA 1OFLA 2NSTA 1OGMX 2O0WA 3B90A 3LMWA 1QJVA 1OGOX
chains in the Genus database with same CATH superfamily
2O0VA 3KRGA 1OFMA 2G0YA 3P4GA 2X6WA 2VFOA 4OJPA 1TYWA 4XR6A 1AIRA 3VSUA 3GQAA 1RU4A 2NT6A 4PMHA 4OJ6A 4KH3A 4XLCA 4XM3A 3PSZA 1QA2A 1IDJA 3GRHA 3AK5A 1O8DA 2Z8GA 1QA1A 2YUHA 3B8YA 4XNFA 3ZPPA 3N90A 4YFOA 1O8FA 1OFDA 1PLUA 4YELA 3NAWA 1O8GA 1BN8A 2IOUG 3B4NA 1JRGA 3SY2A 3JX8A 4XN3A 4Z05A 1H80A 1O8HA 2QY1A 1QA3A 1OFEA 2NSTA 1XG2A 1BHEA 3TH0A 1O8MA 2VBEA 1VBLA 3N6ZA 4OJ5A 2O6WA 4MXNA 1LLWA 4NK6A 4Z03A 2VBMA 4XMYA 2VJIA 3VSTA 4YEIA 2ODLA 1O8KA 2PYGA 4YC5A 2VFNA 2XC1A 2VBKA 1TYUA 4OZZA 4Z06A 2X3HA 3WWGA 4OM9A 2XT2A 2XTXA 3GQ9A 3JURA 3VMVA 1K8FA 2XTWA 4XOPA 5DNSA 3RIQA 3BH6B 4AVZA 1OOCA 3PETA 4XKVA 3GQ8A 1QRBA 4XORA 2O1DA 3SQVA 2X6YA 1O8LA 4XN0A 4XQFA 2NTQA 3BH7B 4YZAA 2NTPA 3DU1X 3H09A 1IDKA 4XLEA 5C1CA 1IB4A 4XOTA 2BSPA 1O8IA 2XT4A 3VSVA 2UVFA 4C2LA 4XLFA 1EA0A 3SZEA 4YDTA 1LM1A 1DBGA 2NSPA 1TYXA 4EW9A 1CLWA 2NZMA 2INVA 1K5CA 4YCQA 4YEJA 1PXZA 1TSPA 3ZSCA 1PE9A 2VFPA 4HWVA 1NHCA 1TYVA 3SUCA 1RMGA 3NB2A 1O8JA 5AMVA 3T9GA 2VFMA 2QX3A 2EWEA 2F3LA 2QYUA 1HG8A 1K4ZA 2PECA 1DABA 2BM7A 1L1IA 2X6XA 1DBOA 1KCCA 2O17A 2QXZA 3VMWA 4YZ0A 1WXRA 2UVEA 2W7ZA 2XTYA 1X0CA 2VJJA 4NK8A 4W8QA 2BX6A 3UW0A 1QCXA 1EE6A 4V02C 3EQOA 4W8SA 2X85A 2IQ7A 2BM6A 2J8IA 3SYJA 4XKWA 4XLHA 1WMRA 2NT9A 1KTWA 1RWRA 3GQ7A 2J8KA 4OZYA 1GQ8A 4U49A 4YZXA 4OJOA 4U4BA 1EZGA 2INUA 2NTBA 4OJLA 4XLAA 5JMCB 2B0RA 4XL9A 3EQNA 2VFQA 3FY3A 2PYHA 1KQ5A 2V5IA 4JRAC 2BM4A 4MR0A 1QQ1A 4OPWA 1CZFA 1LLZA 4YZQA 1HF2A 3LYCA 1O88A 1JTAA 2BM5A 3PSSA 4W8RA 2QZAA 2O04A 4XONA 4I84A 5JLVC 1IA5A 4W8TA 4URRA 1KCDA 1O8EA 3ML3A 5C1EA 1OFLA 1OGMX 1QRCA 2O0WA 3B90A 3LMWA 3LJYA 1QJVA 1OGOX
chains in the Genus database with same CATH topology
2O0VA 3KRGA 1OFMA 4OJPA 4XR6A 2X6WA 1AIRA 3VSUA 3GQAA 1RU4A 2NT6A 4PMHA 4OJ6A 4XLCA 4XM3A 1IDJA 3GRHA 1O8DA 2Z8GA 3B8YA 4XNFA 3ZPPA 1O8FA 1PLUA 4YELA 1O8GA 1BN8A 3B4NA 1JRGA 4XN3A 4Z05A 1H80A 1O8HA 2QY1A 1XG2A 1BHEA 1O8MA 2VBEA 1VBLA 4OJ5A 4MXNA 4NK6A 3VSTA 4Z03A 2VBMA 4XMYA 2VJIA 2ODLA 1O8KA 2PYGA 2VBKA 4OZZA 4Z06A 2X3HA 3WWGA 3GQ9A 3JURA 4XOPA 4AVZA 1OOCA 4XKVA 3GQ8A 4XORA 2O1DA 2X6YA 1O8LA 4XN0A 4XQFA 2NTQA 4YZAA 2NTPA 1IDKA 4XLEA 5C1CA 1IB4A 4XOTA 2BSPA 1O8IA 3VSVA 2UVFA 4C2LA 4XLFA 1DBGA 2NSPA 4EW9A 2NZMA 2INVA 1K5CA 4YEJA 1PXZA 3ZSCA 1PE9A 4HWVA 1NHCA 3SUCA 1RMGA 1O8JA 5AMVA 2QX3A 2EWEA 1HG8A 2PECA 2X6XA 1DBOA 1KCCA 2O17A 2QXZA 3VMWA 4YZ0A 2UVEA 1X0CA 2VJJA 4NK8A 4W8QA 3UW0A 1QCXA 1EE6A 4W8SA 3EQOA 2X85A 2IQ7A 4XKWA 4XLHA 1WMRA 2NT9A 1KTWA 1RWRA 3GQ7A 4OZYA 1GQ8A 4U49A 4YZXA 4OJOA 4U4BA 2INUA 2NTBA 4OJLA 4XLAA 4XL9A 3EQNA 3FY3A 2PYHA 4MR0A 3T9GA 3VMVA 1CZFA 4YZQA 1O88A 1JTAA 4W8RA 2O04A 4XONA 4I84A 1IA5A 4W8TA 4URRA 1KCDA 1O8EA 5C1EA 1OFLA 2NSTA 1OGMX 2O0WA 3B90A 3LMWA 1QJVA 1OGOX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O0V A;  3KRG A;  1OFM A;  4OJP A;  4XR6 A;  2X6W A;  1AIR A;  3VSU A;  3GQA A;  1RU4 A;  2NT6 A;  4PMH A;  4OJ6 A;  4XLC A;  4XM3 A;  1IDJ A;  3GRH A;  1O8D A;  2Z8G A;  3B8Y A;  4XNF A;  3ZPP A;  1O8F A;  1PLU A;  4YEL A;  1O8G A;  1BN8 A;  3B4N A;  1JRG A;  4XN3 A;  4Z05 A;  1H80 A;  1O8H A;  2QY1 A;  1XG2 A;  1BHE A;  1O8M A;  2VBE A;  1VBL A;  4OJ5 A;  4MXN A;  4NK6 A;  3VST A;  4Z03 A;  2VBM A;  4XMY A;  2VJI A;  2ODL A;  1O8K A;  2PYG A;  2VBK A;  4OZZ A;  4Z06 A;  2X3H A;  3WWG A;  3GQ9 A;  3JUR A;  4XOP A;  4AVZ A;  1OOC A;  4XKV A;  3GQ8 A;  4XOR A;  2O1D A;  2X6Y A;  1O8L A;  4XN0 A;  4XQF A;  2NTQ A;  4YZA A;  2NTP A;  1IDK A;  4XLE A;  5C1C A;  1IB4 A;  4XOT A;  2BSP A;  1O8I A;  3VSV A;  2UVF A;  4C2L A;  4XLF A;  1DBG A;  2NSP A;  4EW9 A;  2NZM A;  2INV A;  1K5C A;  4YEJ A;  1PXZ A;  3ZSC A;  1PE9 A;  4HWV A;  1NHC A;  3SUC A;  1RMG A;  1O8J A;  5AMV A;  2QX3 A;  2EWE A;  1HG8 A;  2PEC A;  2X6X A;  1DBO A;  1KCC A;  2O17 A;  2QXZ A;  3VMW A;  4YZ0 A;  2UVE A;  1X0C A;  2VJJ A;  4NK8 A;  4W8Q A;  3UW0 A;  1QCX A;  1EE6 A;  4W8S A;  3EQO A;  2X85 A;  2IQ7 A;  4XKW A;  4XLH A;  1WMR A;  2NT9 A;  1KTW A;  1RWR A;  3GQ7 A;  4OZY A;  1GQ8 A;  4U49 A;  4YZX A;  4OJO A;  4U4B A;  2INU A;  2NTB A;  4OJL A;  4XLA A;  4XL9 A;  3EQN A;  3FY3 A;  2PYH A;  4MR0 A;  3T9G A;  3VMV A;  1CZF A;  4YZQ A;  1O88 A;  1JTA A;  4W8R A;  2O04 A;  4XON A;  4I84 A;  1IA5 A;  4W8T A;  4URR A;  1KCD A;  1O8E A;  5C1E A;  1OFL A;  2NST A;  1OGM X;  2O0W A;  3B90 A;  3LMW A;  1QJV A;  1OGO X; 
#chains in the Genus database with same CATH topology
 2O0V A;  3KRG A;  1OFM A;  2G0Y A;  3P4G A;  2X6W A;  2VFO A;  4OJP A;  1TYW A;  4XR6 A;  1AIR A;  3VSU A;  3GQA A;  1RU4 A;  2NT6 A;  4PMH A;  4OJ6 A;  4KH3 A;  4XLC A;  4XM3 A;  3PSZ A;  1QA2 A;  1IDJ A;  3GRH A;  3AK5 A;  1O8D A;  2Z8G A;  1QA1 A;  2YUH A;  3B8Y A;  4XNF A;  3ZPP A;  3N90 A;  4YFO A;  1O8F A;  1OFD A;  1PLU A;  4YEL A;  3NAW A;  1O8G A;  1BN8 A;  2IOU G;  3B4N A;  1JRG A;  3SY2 A;  3JX8 A;  4XN3 A;  4Z05 A;  1H80 A;  1O8H A;  2QY1 A;  1QA3 A;  1OFE A;  2NST A;  1XG2 A;  1BHE A;  3TH0 A;  1O8M A;  2VBE A;  1VBL A;  3N6Z A;  4OJ5 A;  2O6W A;  4MXN A;  1LLW A;  4NK6 A;  4Z03 A;  2VBM A;  4XMY A;  2VJI A;  3VST A;  4YEI A;  2ODL A;  1O8K A;  2PYG A;  4YC5 A;  2VFN A;  2XC1 A;  2VBK A;  1TYU A;  4OZZ A;  4Z06 A;  2X3H A;  3WWG A;  4OM9 A;  2XT2 A;  2XTX A;  3GQ9 A;  3JUR A;  3VMV A;  1K8F A;  2XTW A;  4XOP A;  5DNS A;  3RIQ A;  3BH6 B;  4AVZ A;  1OOC A;  3PET A;  4XKV A;  3GQ8 A;  1QRB A;  4XOR A;  2O1D A;  3SQV A;  2X6Y A;  1O8L A;  4XN0 A;  4XQF A;  2NTQ A;  3BH7 B;  4YZA A;  2NTP A;  3DU1 X;  3H09 A;  1IDK A;  4XLE A;  5C1C A;  1IB4 A;  4XOT A;  2BSP A;  1O8I A;  2XT4 A;  3VSV A;  2UVF A;  4C2L A;  4XLF A;  1EA0 A;  3SZE A;  4YDT A;  1LM1 A;  1DBG A;  2NSP A;  1TYX A;  4EW9 A;  1CLW A;  2NZM A;  2INV A;  1K5C A;  4YCQ A;  4YEJ A;  1PXZ A;  1TSP A;  3ZSC A;  1PE9 A;  2VFP A;  4HWV A;  1NHC A;  1TYV A;  3SUC A;  1RMG A;  3NB2 A;  1O8J A;  5AMV A;  3T9G A;  2VFM A;  2QX3 A;  2EWE A;  2F3L A;  2QYU A;  1HG8 A;  1K4Z A;  2PEC A;  1DAB A;  2BM7 A;  1L1I A;  2X6X A;  1DBO A;  1KCC A;  2O17 A;  2QXZ A;  3VMW A;  4YZ0 A;  1WXR A;  2UVE A;  2W7Z A;  2XTY A;  1X0C A;  2VJJ A;  4NK8 A;  4W8Q A;  2BX6 A;  3UW0 A;  1QCX A;  1EE6 A;  4V02 C;  3EQO A;  4W8S A;  2X85 A;  2IQ7 A;  2BM6 A;  2J8I A;  3SYJ A;  4XKW A;  4XLH A;  1WMR A;  2NT9 A;  1KTW A;  1RWR A;  3GQ7 A;  2J8K A;  4OZY A;  1GQ8 A;  4U49 A;  4YZX A;  4OJO A;  4U4B A;  1EZG A;  2INU A;  2NTB A;  4OJL A;  4XLA A;  5JMC B;  2B0R A;  4XL9 A;  3EQN A;  2VFQ A;  3FY3 A;  2PYH A;  1KQ5 A;  2V5I A;  4JRA C;  2BM4 A;  4MR0 A;  1QQ1 A;  4OPW A;  1CZF A;  1LLZ A;  4YZQ A;  1HF2 A;  3LYC A;  1O88 A;  1JTA A;  2BM5 A;  3PSS A;  4W8R A;  2QZA A;  2O04 A;  4XON A;  4I84 A;  5JLV C;  1IA5 A;  4W8T A;  4URR A;  1KCD A;  1O8E A;  3ML3 A;  5C1E A;  1OFL A;  1OGM X;  1QRC A;  2O0W A;  3B90 A;  3LMW A;  3LJY A;  1QJV A;  1OGO X; 
#chains in the Genus database with same CATH homology
 2O0V A;  3KRG A;  1OFM A;  4OJP A;  4XR6 A;  2X6W A;  1AIR A;  3VSU A;  3GQA A;  1RU4 A;  2NT6 A;  4PMH A;  4OJ6 A;  4XLC A;  4XM3 A;  1IDJ A;  3GRH A;  1O8D A;  2Z8G A;  3B8Y A;  4XNF A;  3ZPP A;  1O8F A;  1PLU A;  4YEL A;  1O8G A;  1BN8 A;  3B4N A;  1JRG A;  4XN3 A;  4Z05 A;  1H80 A;  1O8H A;  2QY1 A;  1XG2 A;  1BHE A;  1O8M A;  2VBE A;  1VBL A;  4OJ5 A;  4MXN A;  4NK6 A;  3VST A;  4Z03 A;  2VBM A;  4XMY A;  2VJI A;  2ODL A;  1O8K A;  2PYG A;  2VBK A;  4OZZ A;  4Z06 A;  2X3H A;  3WWG A;  3GQ9 A;  3JUR A;  4XOP A;  4AVZ A;  1OOC A;  4XKV A;  3GQ8 A;  4XOR A;  2O1D A;  2X6Y A;  1O8L A;  4XN0 A;  4XQF A;  2NTQ A;  4YZA A;  2NTP A;  1IDK A;  4XLE A;  5C1C A;  1IB4 A;  4XOT A;  2BSP A;  1O8I A;  3VSV A;  2UVF A;  4C2L A;  4XLF A;  1DBG A;  2NSP A;  4EW9 A;  2NZM A;  2INV A;  1K5C A;  4YEJ A;  1PXZ A;  3ZSC A;  1PE9 A;  4HWV A;  1NHC A;  3SUC A;  1RMG A;  1O8J A;  5AMV A;  2QX3 A;  2EWE A;  1HG8 A;  2PEC A;  2X6X A;  1DBO A;  1KCC A;  2O17 A;  2QXZ A;  3VMW A;  4YZ0 A;  2UVE A;  1X0C A;  2VJJ A;  4NK8 A;  4W8Q A;  3UW0 A;  1QCX A;  1EE6 A;  4W8S A;  3EQO A;  2X85 A;  2IQ7 A;  4XKW A;  4XLH A;  1WMR A;  2NT9 A;  1KTW A;  1RWR A;  3GQ7 A;  4OZY A;  1GQ8 A;  4U49 A;  4YZX A;  4OJO A;  4U4B A;  2INU A;  2NTB A;  4OJL A;  4XLA A;  4XL9 A;  3EQN A;  3FY3 A;  2PYH A;  4MR0 A;  3T9G A;  3VMV A;  1CZF A;  4YZQ A;  1O88 A;  1JTA A;  4W8R A;  2O04 A;  4XON A;  4I84 A;  1IA5 A;  4W8T A;  4URR A;  1KCD A;  1O8E A;  5C1E A;  1OFL A;  2NST A;  1OGM X;  2O0W A;  3B90 A;  3LMW A;  1QJV A;  1OGO X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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