1O8GA

Pectate lyase c from erwinia chrysanthemi at ph 9.5 with 5mm ca2+
Total Genus 135
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
352
structure length
352
Chain Sequence
b'ATDTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKLPGYAGVGKNLATLTSTAC'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Characterization and Implications of Ca2+ Binding to Pectate Lyase C
pubmed doi rcsb
molecule keywords PECTATE LYASE C
source organism Erwinia chrysanthemi
molecule tags Hydrolase
total genus 135
structure length 352
sequence length 352
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2002-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1o8gA00
1RWRA 2INVA 4OJ5A 4W8QA 4AVZA 4PMHA 1O8GA 3KRGA 1O88A 2PECA 1K5CA 4Z06A 1BHEA 1O8EA 2VBMA 1AIRA 2QX3A 3B8YA 3T9GA 2NSTA 4XN0A 2NTPA 2NSPA 4HWVA 4I84A 4Z05A 2X3HA 4XLHA 3ZSCA 4W8TA 4Z03A 4YZXA 2VBEA 4XLFA 4YZ0A 4YZAA 4OZYA 4XR6A 4C2LA 4XLEA 2UVFA 1CZFA 1PE9A 3GQAA 3WWGA 2X85A 3EQNA 4XLAA 4XQFA 2O0VA 1O8HA 2O04A 4OJ6A 4MR0A 3ZPPA 3VSUA 3GRHA 1RMGA 1QJVA 2NT9A 1OGOX 4XORA 4XN3A 5C1EA 2ODLA 4XOPA 4OJLA 4XOTA 1IDKA 2UVEA 2Z8GA 4YEJA 2X6WA 1KCDA 4XKWA 1QCXA 2O1DA 4W8RA 5AMVA 2QY1A 3UW0A 2X6XA 1JRGA 2VBKA 1IB4A 1NHCA 2BSPA 3JURA 2NT6A 3VMWA 2INUA 1O8FA 4W8SA 2QXZA 1OFMA 1KTWA 1GQ8A 3LMWA 4OJOA 4OZZA 4NK8A 2O0WA 2VJJA 4XNFA 3VSVA 2PYHA 1O8JA 1OGMX 1OOCA 2O17A 4OJPA 1VBLA 1X0CA 1DBOA 1H80A 2IQ7A 1O8IA 3B4NA 4XLCA 1PLUA 4URRA 3B90A 5C1CA 1JTAA 3GQ7A 1HG8A 4XKVA 4XM3A 1O8LA 1PXZA 4YZQA 1IDJA 4MXNA 1WMRA 3GQ9A 2NTBA 1KCCA 3GQ8A 4XONA 1EE6A 2X6YA 1O8KA 1IA5A 2VJIA 2EWEA 2PYGA 1O8DA 4EW9A 3FY3A 4U49A 2NZMA 4NK6A 3VSTA 2NTQA 1O8MA 4U4BA 1DBGA 3SUCA 1OFLA 3VMVA 1RU4A 4YELA 1XG2A 3EQOA 4XL9A 4XMYA 1BN8A
chains in the Genus database with same CATH superfamily
3LJYA 4YDTA 1QA1A 1RWRA 2INVA 4OJ5A 2BM7A 4W8QA 4AVZA 4PMHA 1BN8A 1O8GA 1TSPA 2IOUG 3KRGA 1O88A 1K4ZA 1K8FA 2PECA 5JLVC 1K5CA 4Z06A 1BHEA 4JRAC 1O8EA 2VBMA 1AIRA 2O6WA 2VFMA 2W7ZA 2QX3A 3B8YA 3T9GA 2YUHA 1TYXA 1QA2A 2NSTA 1TYVA 3SYJA 4XN0A 1LLZA 2NTPA 2NSPA 4HWVA 4I84A 4Z05A 1EA0A 2BM4A 2X3HA 4XLHA 3ZSCA 4W8TA 4Z03A 4YZXA 2VBEA 4XLFA 4YZ0A 4YZAA 1LLWA 1TYWA 4OZYA 4XR6A 4C2LA 4XLEA 1QRBA 2UVFA 1CZFA 1PE9A 2J8IA 2VFNA 2V5IA 3GQAA 3N6ZA 2G0YA 2X85A 3EQNA 4XLAA 3WWGA 2O0VA 4XQFA 1O8HA 2O04A 4OJ6A 4MR0A 3ZPPA 4OPWA 3GRHA 3BH7B 3VSUA 1RMGA 4YEIA 1QJVA 2F3LA 1OGOX 2NT9A 4XORA 4XN3A 5C1EA 4V02C 5JMCB 2ODLA 5DNSA 4XOPA 4OJLA 4XOTA 1IDKA 2UVEA 2Z8GA 4YEJA 1KQ5A 2X6WA 1KCDA 2BX6A 4XKWA 1QCXA 2O1DA 4W8RA 5AMVA 2QY1A 3N90A 3RIQA 3UW0A 2X6XA 1JRGA 3TH0A 3LYCA 2VBKA 1IB4A 3PETA 1NHCA 2BSPA 2XT2A 3JURA 1EZGA 2NT6A 3VMWA 1QQ1A 2INUA 3PSSA 1O8FA 4W8SA 2QXZA 1WXRA 1OFMA 3NAWA 1GQ8A 3LMWA 2J8KA 2XTXA 4OJOA 4OZZA 4NK8A 2O0WA 2QYUA 2VJJA 3P4GA 4XNFA 3VSVA 2PYHA 1O8JA 1OGMX 1OOCA 2XTYA 2O17A 4OJPA 1VBLA 3BH6B 3DU1X 1X0CA 1DBOA 1H80A 2IQ7A 1O8IA 2VFQA 2XC1A 3B4NA 1PLUA 4OM9A 4URRA 4XLCA 1DABA 1CLWA 3B90A 4YCQA 5C1CA 1JTAA 3GQ7A 1HG8A 4XKVA 4XM3A 1O8LA 1PXZA 1HF2A 1IDJA 4YZQA 2XT4A 2QZAA 3SZEA 4MXNA 2XTWA 2B0RA 1WMRA 3GQ9A 2NTBA 3H09A 1L1IA 1KCCA 3JX8A 3SY2A 3AK5A 3GQ8A 4XONA 1EE6A 2X6YA 1O8KA 1IA5A 2VJIA 3ML3A 2EWEA 2PYGA 1OFEA 1QRCA 1O8DA 4YC5A 4EW9A 3FY3A 4U49A 1QA3A 2BM6A 2VFPA 2NZMA 2BM5A 4NK6A 4YFOA 3VSTA 2NTQA 1O8MA 1OFDA 4U4BA 3SQVA 1DBGA 3PSZA 1OFLA 3SUCA 3VMVA 1RU4A 1LM1A 4YELA 4KH3A 1XG2A 3EQOA 3NB2A 4XL9A 1TYUA 4XMYA 2VFOA 1KTWA
chains in the Genus database with same CATH topology
1RWRA 2INVA 4OJ5A 4W8QA 4AVZA 4PMHA 1O8GA 3KRGA 1O88A 2PECA 1K5CA 4Z06A 1BHEA 1O8EA 2VBMA 1AIRA 2QX3A 3B8YA 3T9GA 2NSTA 4XN0A 2NTPA 2NSPA 4HWVA 4I84A 4Z05A 2X3HA 4XLHA 3ZSCA 4W8TA 4Z03A 4YZXA 2VBEA 4XLFA 4YZ0A 4YZAA 4OZYA 4XR6A 4C2LA 4XLEA 2UVFA 1CZFA 1PE9A 3GQAA 3WWGA 2X85A 3EQNA 4XLAA 4XQFA 2O0VA 1O8HA 2O04A 4OJ6A 4MR0A 3ZPPA 3VSUA 3GRHA 1RMGA 1QJVA 2NT9A 1OGOX 4XORA 4XN3A 5C1EA 2ODLA 4XOPA 4OJLA 4XOTA 1IDKA 2UVEA 2Z8GA 4YEJA 2X6WA 1KCDA 4XKWA 1QCXA 2O1DA 4W8RA 5AMVA 2QY1A 3UW0A 2X6XA 1JRGA 2VBKA 1IB4A 1NHCA 2BSPA 3JURA 2NT6A 3VMWA 2INUA 1O8FA 4W8SA 2QXZA 1OFMA 1KTWA 1GQ8A 3LMWA 4OJOA 4OZZA 4NK8A 2O0WA 2VJJA 4XNFA 3VSVA 2PYHA 1O8JA 1OGMX 1OOCA 2O17A 4OJPA 1VBLA 1X0CA 1DBOA 1H80A 2IQ7A 1O8IA 3B4NA 4XLCA 1PLUA 4URRA 3B90A 5C1CA 1JTAA 3GQ7A 1HG8A 4XKVA 4XM3A 1O8LA 1PXZA 4YZQA 1IDJA 4MXNA 1WMRA 3GQ9A 2NTBA 1KCCA 3GQ8A 4XONA 1EE6A 2X6YA 1O8KA 1IA5A 2VJIA 2EWEA 2PYGA 1O8DA 4EW9A 3FY3A 4U49A 2NZMA 4NK6A 3VSTA 2NTQA 1O8MA 4U4BA 1DBGA 3SUCA 1OFLA 3VMVA 1RU4A 4YELA 1XG2A 3EQOA 4XL9A 4XMYA 1BN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RWR A;  2INV A;  4OJ5 A;  4W8Q A;  4AVZ A;  4PMH A;  1O8G A;  3KRG A;  1O88 A;  2PEC A;  1K5C A;  4Z06 A;  1BHE A;  1O8E A;  2VBM A;  1AIR A;  2QX3 A;  3B8Y A;  3T9G A;  2NST A;  4XN0 A;  2NTP A;  2NSP A;  4HWV A;  4I84 A;  4Z05 A;  2X3H A;  4XLH A;  3ZSC A;  4W8T A;  4Z03 A;  4YZX A;  2VBE A;  4XLF A;  4YZ0 A;  4YZA A;  4OZY A;  4XR6 A;  4C2L A;  4XLE A;  2UVF A;  1CZF A;  1PE9 A;  3GQA A;  3WWG A;  2X85 A;  3EQN A;  4XLA A;  4XQF A;  2O0V A;  1O8H A;  2O04 A;  4OJ6 A;  4MR0 A;  3ZPP A;  3VSU A;  3GRH A;  1RMG A;  1QJV A;  2NT9 A;  1OGO X;  4XOR A;  4XN3 A;  5C1E A;  2ODL A;  4XOP A;  4OJL A;  4XOT A;  1IDK A;  2UVE A;  2Z8G A;  4YEJ A;  2X6W A;  1KCD A;  4XKW A;  1QCX A;  2O1D A;  4W8R A;  5AMV A;  2QY1 A;  3UW0 A;  2X6X A;  1JRG A;  2VBK A;  1IB4 A;  1NHC A;  2BSP A;  3JUR A;  2NT6 A;  3VMW A;  2INU A;  1O8F A;  4W8S A;  2QXZ A;  1OFM A;  1KTW A;  1GQ8 A;  3LMW A;  4OJO A;  4OZZ A;  4NK8 A;  2O0W A;  2VJJ A;  4XNF A;  3VSV A;  2PYH A;  1O8J A;  1OGM X;  1OOC A;  2O17 A;  4OJP A;  1VBL A;  1X0C A;  1DBO A;  1H80 A;  2IQ7 A;  1O8I A;  3B4N A;  4XLC A;  1PLU A;  4URR A;  3B90 A;  5C1C A;  1JTA A;  3GQ7 A;  1HG8 A;  4XKV A;  4XM3 A;  1O8L A;  1PXZ A;  4YZQ A;  1IDJ A;  4MXN A;  1WMR A;  3GQ9 A;  2NTB A;  1KCC A;  3GQ8 A;  4XON A;  1EE6 A;  2X6Y A;  1O8K A;  1IA5 A;  2VJI A;  2EWE A;  2PYG A;  1O8D A;  4EW9 A;  3FY3 A;  4U49 A;  2NZM A;  4NK6 A;  3VST A;  2NTQ A;  1O8M A;  4U4B A;  1DBG A;  3SUC A;  1OFL A;  3VMV A;  1RU4 A;  4YEL A;  1XG2 A;  3EQO A;  4XL9 A;  4XMY A;  1BN8 A; 
#chains in the Genus database with same CATH topology
 3LJY A;  4YDT A;  1QA1 A;  1RWR A;  2INV A;  4OJ5 A;  2BM7 A;  4W8Q A;  4AVZ A;  4PMH A;  1BN8 A;  1O8G A;  1TSP A;  2IOU G;  3KRG A;  1O88 A;  1K4Z A;  1K8F A;  2PEC A;  5JLV C;  1K5C A;  4Z06 A;  1BHE A;  4JRA C;  1O8E A;  2VBM A;  1AIR A;  2O6W A;  2VFM A;  2W7Z A;  2QX3 A;  3B8Y A;  3T9G A;  2YUH A;  1TYX A;  1QA2 A;  2NST A;  1TYV A;  3SYJ A;  4XN0 A;  1LLZ A;  2NTP A;  2NSP A;  4HWV A;  4I84 A;  4Z05 A;  1EA0 A;  2BM4 A;  2X3H A;  4XLH A;  3ZSC A;  4W8T A;  4Z03 A;  4YZX A;  2VBE A;  4XLF A;  4YZ0 A;  4YZA A;  1LLW A;  1TYW A;  4OZY A;  4XR6 A;  4C2L A;  4XLE A;  1QRB A;  2UVF A;  1CZF A;  1PE9 A;  2J8I A;  2VFN A;  2V5I A;  3GQA A;  3N6Z A;  2G0Y A;  2X85 A;  3EQN A;  4XLA A;  3WWG A;  2O0V A;  4XQF A;  1O8H A;  2O04 A;  4OJ6 A;  4MR0 A;  3ZPP A;  4OPW A;  3GRH A;  3BH7 B;  3VSU A;  1RMG A;  4YEI A;  1QJV A;  2F3L A;  1OGO X;  2NT9 A;  4XOR A;  4XN3 A;  5C1E A;  4V02 C;  5JMC B;  2ODL A;  5DNS A;  4XOP A;  4OJL A;  4XOT A;  1IDK A;  2UVE A;  2Z8G A;  4YEJ A;  1KQ5 A;  2X6W A;  1KCD A;  2BX6 A;  4XKW A;  1QCX A;  2O1D A;  4W8R A;  5AMV A;  2QY1 A;  3N90 A;  3RIQ A;  3UW0 A;  2X6X A;  1JRG A;  3TH0 A;  3LYC A;  2VBK A;  1IB4 A;  3PET A;  1NHC A;  2BSP A;  2XT2 A;  3JUR A;  1EZG A;  2NT6 A;  3VMW A;  1QQ1 A;  2INU A;  3PSS A;  1O8F A;  4W8S A;  2QXZ A;  1WXR A;  1OFM A;  3NAW A;  1GQ8 A;  3LMW A;  2J8K A;  2XTX A;  4OJO A;  4OZZ A;  4NK8 A;  2O0W A;  2QYU A;  2VJJ A;  3P4G A;  4XNF A;  3VSV A;  2PYH A;  1O8J A;  1OGM X;  1OOC A;  2XTY A;  2O17 A;  4OJP A;  1VBL A;  3BH6 B;  3DU1 X;  1X0C A;  1DBO A;  1H80 A;  2IQ7 A;  1O8I A;  2VFQ A;  2XC1 A;  3B4N A;  1PLU A;  4OM9 A;  4URR A;  4XLC A;  1DAB A;  1CLW A;  3B90 A;  4YCQ A;  5C1C A;  1JTA A;  3GQ7 A;  1HG8 A;  4XKV A;  4XM3 A;  1O8L A;  1PXZ A;  1HF2 A;  1IDJ A;  4YZQ A;  2XT4 A;  2QZA A;  3SZE A;  4MXN A;  2XTW A;  2B0R A;  1WMR A;  3GQ9 A;  2NTB A;  3H09 A;  1L1I A;  1KCC A;  3JX8 A;  3SY2 A;  3AK5 A;  3GQ8 A;  4XON A;  1EE6 A;  2X6Y A;  1O8K A;  1IA5 A;  2VJI A;  3ML3 A;  2EWE A;  2PYG A;  1OFE A;  1QRC A;  1O8D A;  4YC5 A;  4EW9 A;  3FY3 A;  4U49 A;  1QA3 A;  2BM6 A;  2VFP A;  2NZM A;  2BM5 A;  4NK6 A;  4YFO A;  3VST A;  2NTQ A;  1O8M A;  1OFD A;  4U4B A;  3SQV A;  1DBG A;  3PSZ A;  1OFL A;  3SUC A;  3VMV A;  1RU4 A;  1LM1 A;  4YEL A;  4KH3 A;  1XG2 A;  3EQO A;  3NB2 A;  4XL9 A;  1TYU A;  4XMY A;  2VFO A;  1KTW A; 
#chains in the Genus database with same CATH homology
 1RWR A;  2INV A;  4OJ5 A;  4W8Q A;  4AVZ A;  4PMH A;  1O8G A;  3KRG A;  1O88 A;  2PEC A;  1K5C A;  4Z06 A;  1BHE A;  1O8E A;  2VBM A;  1AIR A;  2QX3 A;  3B8Y A;  3T9G A;  2NST A;  4XN0 A;  2NTP A;  2NSP A;  4HWV A;  4I84 A;  4Z05 A;  2X3H A;  4XLH A;  3ZSC A;  4W8T A;  4Z03 A;  4YZX A;  2VBE A;  4XLF A;  4YZ0 A;  4YZA A;  4OZY A;  4XR6 A;  4C2L A;  4XLE A;  2UVF A;  1CZF A;  1PE9 A;  3GQA A;  3WWG A;  2X85 A;  3EQN A;  4XLA A;  4XQF A;  2O0V A;  1O8H A;  2O04 A;  4OJ6 A;  4MR0 A;  3ZPP A;  3VSU A;  3GRH A;  1RMG A;  1QJV A;  2NT9 A;  1OGO X;  4XOR A;  4XN3 A;  5C1E A;  2ODL A;  4XOP A;  4OJL A;  4XOT A;  1IDK A;  2UVE A;  2Z8G A;  4YEJ A;  2X6W A;  1KCD A;  4XKW A;  1QCX A;  2O1D A;  4W8R A;  5AMV A;  2QY1 A;  3UW0 A;  2X6X A;  1JRG A;  2VBK A;  1IB4 A;  1NHC A;  2BSP A;  3JUR A;  2NT6 A;  3VMW A;  2INU A;  1O8F A;  4W8S A;  2QXZ A;  1OFM A;  1KTW A;  1GQ8 A;  3LMW A;  4OJO A;  4OZZ A;  4NK8 A;  2O0W A;  2VJJ A;  4XNF A;  3VSV A;  2PYH A;  1O8J A;  1OGM X;  1OOC A;  2O17 A;  4OJP A;  1VBL A;  1X0C A;  1DBO A;  1H80 A;  2IQ7 A;  1O8I A;  3B4N A;  4XLC A;  1PLU A;  4URR A;  3B90 A;  5C1C A;  1JTA A;  3GQ7 A;  1HG8 A;  4XKV A;  4XM3 A;  1O8L A;  1PXZ A;  4YZQ A;  1IDJ A;  4MXN A;  1WMR A;  3GQ9 A;  2NTB A;  1KCC A;  3GQ8 A;  4XON A;  1EE6 A;  2X6Y A;  1O8K A;  1IA5 A;  2VJI A;  2EWE A;  2PYG A;  1O8D A;  4EW9 A;  3FY3 A;  4U49 A;  2NZM A;  4NK6 A;  3VST A;  2NTQ A;  1O8M A;  4U4B A;  1DBG A;  3SUC A;  1OFL A;  3VMV A;  1RU4 A;  4YEL A;  1XG2 A;  3EQO A;  4XL9 A;  4XMY A;  1BN8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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