2NTPA

Crystal structure of pectin methylesterase in complex with hexasaccharide vi
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
342
structure length
342
Chain Sequence
ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Erwinia chrysanthemi
publication title Molecular basis of the activity of the phytopathogen pectin methylesterase.
pubmed doi rcsb
molecule keywords Pectinesterase A
total genus 125
structure length 342
sequence length 342
chains with identical sequence B
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2006-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2ntpA00
3GQ7A 4OJLA 4XR6A 4XN3A 1IB4A 4U49A 1OFLA 4XNFA 1RU4A 3B4NA 1O8IA 3B90A 4YEJA 1O8HA 4YZ0A 2EWEA 4MR0A 4PMHA 1QCXA 4XLFA 2O0WA 2VBMA 3GQAA 2INUA 4W8TA 2IQ7A 2PYHA 4XKWA 4W8SA 4YZXA 3ZPPA 1KTWA 2NT9A 4URRA 4YZAA 4XLAA 2O04A 2X6YA 1O8JA 1O8EA 1K5CA 1X0CA 4OJPA 1OOCA 3JURA 3VSVA 2O1DA 1OGOX 3FY3A 2O0VA 1H80A 4AVZA 1O8LA 1O8MA 4XL9A 3GQ8A 5C1EA 1OGMX 2ODLA 1HG8A 2NSPA 1DBGA 2NTQA 1IDJA 3VMVA 4XORA 2Z8GA 1KCDA 3T9GA 2X85A 1QJVA 4OJOA 1GQ8A 4W8RA 3VSTA 2QX3A 2NTPA 4MXNA 3B8YA 1O8GA 2X3HA 4Z06A 1XG2A 4U4BA 4OJ5A 4XLHA 1KCCA 4HWVA 1BN8A 4XMYA 3VMWA 4NK8A 1DBOA 3UW0A 1AIRA 2NT6A 1NHCA 1O88A 5C1CA 3GRHA 3LMWA 4W8QA 2VBEA 4EW9A 4YELA 1IA5A 1O8KA 1JRGA 3GQ9A 4Z05A 4OJ6A 1O8FA 3WWGA 2PYGA 1EE6A 4XONA 2NTBA 4XQFA 4XN0A 1RWRA 1RMGA 4XKVA 4XOPA 3ZSCA 2VJIA 1IDKA 1PXZA 2X6XA 2INVA 2BSPA 2UVFA 2VBKA 1VBLA 2QY1A 3SUCA 1PE9A 3EQNA 3EQOA 3KRGA 1BHEA 2QXZA 2VJJA 4OZZA 4XLCA 1WMRA 2PECA 4C2LA 4OZYA 4XOTA 4XM3A 2NSTA 2NZMA 4NK6A 2O17A 5AMVA 4XLEA 4I84A 4YZQA 2UVEA 3VSUA 1O8DA 1JTAA 4Z03A 1PLUA 2X6WA 1CZFA 1OFMA
chains in the Genus database with same CATH superfamily
3GQ7A 4OJLA 4XR6A 3LJYA 4XN3A 1IB4A 4U49A 1OFLA 3NAWA 4XNFA 1RU4A 3B4NA 1LLZA 3NB2A 1O8IA 2IOUG 3B90A 3TH0A 4YEJA 5JMCB 3P4GA 1LLWA 1O8HA 4YZ0A 2VFMA 1KQ5A 2EWEA 4KH3A 4MR0A 4PMHA 1QCXA 4YCQA 4XLFA 2O6WA 2O0WA 2VBMA 3GQAA 2INUA 4W8TA 2IQ7A 2PYHA 4XKWA 1DABA 4W8SA 2BM5A 2XT4A 1KCCA 2XTYA 3H09A 4YZXA 3ZPPA 1KTWA 2NT9A 2W7ZA 4URRA 4YZAA 4YDTA 4XLAA 2O04A 2X6YA 1O8JA 1O8EA 2BM7A 2VFQA 3BH6B 1WXRA 1K5CA 1X0CA 4OJPA 2BM4A 1OOCA 3JURA 2XTXA 3RIQA 3VSVA 2O1DA 1TYXA 1OGOX 1QRBA 3FY3A 1QQ1A 2O0VA 4YC5A 1H80A 4AVZA 1O8LA 1QA3A 1O8MA 4XL9A 3GQ8A 2G0YA 5C1EA 1OGMX 2ODLA 1HG8A 2NSPA 5DNSA 1DBGA 2NTQA 1IDJA 3VMVA 1TYVA 4XORA 1QA1A 2Z8GA 3SZEA 1KCDA 1TSPA 1TYUA 3T9GA 2X85A 1QJVA 1LM1A 2BX6A 2J8KA 4OJOA 1GQ8A 1K8FA 4W8RA 1K4ZA 3VSTA 2QX3A 2NTPA 4MXNA 3B8YA 4JRAC 1O8GA 2X3HA 4Z06A 1HF2A 4YEIA 1XG2A 3PETA 4OPWA 2B0RA 4OJ5A 2YUHA 1BN8A 4HWVA 3N6ZA 4NK8A 1DBOA 4XLHA 4XMYA 3UW0A 3VMWA 3AK5A 3N90A 2XT2A 1AIRA 2XC1A 2NT6A 1NHCA 1O88A 3DU1X 4OM9A 1QA2A 5C1CA 3GRHA 3LMWA 4W8QA 2VBEA 4EW9A 4YELA 3SYJA 1IA5A 1O8KA 1TYWA 1JRGA 3GQ9A 1EA0A 4Z05A 4OJ6A 4YFOA 1O8FA 3WWGA 3PSZA 2PYGA 1EZGA 1EE6A 4XONA 2NTBA 4XQFA 4XN0A 1L1IA 4U4BA 4V02C 3PSSA 2VFOA 3LYCA 1RWRA 1RMGA 4XKVA 3SQVA 2BM6A 2VFPA 2VFNA 4XOPA 1CLWA 3ZSCA 2VJIA 1IDKA 1PXZA 2QZAA 2X6XA 2INVA 1QRCA 2BSPA 2UVFA 5JLVC 2VBKA 3JX8A 1VBLA 2QY1A 3SUCA 1PE9A 3BH7B 3EQNA 3EQOA 3KRGA 1BHEA 2J8IA 2QXZA 2VJJA 1OFDA 4OZZA 4XLCA 1WMRA 2PECA 4C2LA 4OZYA 3ML3A 4XOTA 4XM3A 2NSTA 2NZMA 4NK6A 2O17A 2XTWA 1OFEA 4XLEA 5AMVA 4I84A 4YZQA 2UVEA 3VSUA 1O8DA 1JTAA 2QYUA 2V5IA 4Z03A 1PLUA 1OFMA 2X6WA 3SY2A 1CZFA 2F3LA
chains in the Genus database with same CATH topology
3GQ7A 4OJLA 4XR6A 4XN3A 1IB4A 4U49A 1OFLA 4XNFA 1RU4A 3B4NA 1O8IA 3B90A 4YEJA 1O8HA 4YZ0A 2EWEA 4MR0A 4PMHA 1QCXA 4XLFA 2O0WA 2VBMA 3GQAA 2INUA 4W8TA 2IQ7A 2PYHA 4XKWA 4W8SA 4YZXA 3ZPPA 1KTWA 2NT9A 4URRA 4YZAA 4XLAA 2O04A 2X6YA 1O8JA 1O8EA 1K5CA 1X0CA 4OJPA 1OOCA 3JURA 3VSVA 2O1DA 1OGOX 3FY3A 2O0VA 1H80A 4AVZA 1O8LA 1O8MA 4XL9A 3GQ8A 5C1EA 1OGMX 2ODLA 1HG8A 2NSPA 1DBGA 2NTQA 1IDJA 3VMVA 4XORA 2Z8GA 1KCDA 3T9GA 2X85A 1QJVA 4OJOA 1GQ8A 4W8RA 3VSTA 2QX3A 2NTPA 4MXNA 3B8YA 1O8GA 2X3HA 4Z06A 1XG2A 4U4BA 4OJ5A 4XLHA 1KCCA 4HWVA 1BN8A 4XMYA 3VMWA 4NK8A 1DBOA 3UW0A 1AIRA 2NT6A 1NHCA 1O88A 5C1CA 3GRHA 3LMWA 4W8QA 2VBEA 4EW9A 4YELA 1IA5A 1O8KA 1JRGA 3GQ9A 4Z05A 4OJ6A 1O8FA 3WWGA 2PYGA 1EE6A 4XONA 2NTBA 4XQFA 4XN0A 1RWRA 1RMGA 4XKVA 4XOPA 3ZSCA 2VJIA 1IDKA 1PXZA 2X6XA 2INVA 2BSPA 2UVFA 2VBKA 1VBLA 2QY1A 3SUCA 1PE9A 3EQNA 3EQOA 3KRGA 1BHEA 2QXZA 2VJJA 4OZZA 4XLCA 1WMRA 2PECA 4C2LA 4OZYA 4XOTA 4XM3A 2NSTA 2NZMA 4NK6A 2O17A 5AMVA 4XLEA 4I84A 4YZQA 2UVEA 3VSUA 1O8DA 1JTAA 4Z03A 1PLUA 2X6WA 1CZFA 1OFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GQ7 A;  4OJL A;  4XR6 A;  4XN3 A;  1IB4 A;  4U49 A;  1OFL A;  4XNF A;  1RU4 A;  3B4N A;  1O8I A;  3B90 A;  4YEJ A;  1O8H A;  4YZ0 A;  2EWE A;  4MR0 A;  4PMH A;  1QCX A;  4XLF A;  2O0W A;  2VBM A;  3GQA A;  2INU A;  4W8T A;  2IQ7 A;  2PYH A;  4XKW A;  4W8S A;  4YZX A;  3ZPP A;  1KTW A;  2NT9 A;  4URR A;  4YZA A;  4XLA A;  2O04 A;  2X6Y A;  1O8J A;  1O8E A;  1K5C A;  1X0C A;  4OJP A;  1OOC A;  3JUR A;  3VSV A;  2O1D A;  1OGO X;  3FY3 A;  2O0V A;  1H80 A;  4AVZ A;  1O8L A;  1O8M A;  4XL9 A;  3GQ8 A;  5C1E A;  1OGM X;  2ODL A;  1HG8 A;  2NSP A;  1DBG A;  2NTQ A;  1IDJ A;  3VMV A;  4XOR A;  2Z8G A;  1KCD A;  3T9G A;  2X85 A;  1QJV A;  4OJO A;  1GQ8 A;  4W8R A;  3VST A;  2QX3 A;  2NTP A;  4MXN A;  3B8Y A;  1O8G A;  2X3H A;  4Z06 A;  1XG2 A;  4U4B A;  4OJ5 A;  4XLH A;  1KCC A;  4HWV A;  1BN8 A;  4XMY A;  3VMW A;  4NK8 A;  1DBO A;  3UW0 A;  1AIR A;  2NT6 A;  1NHC A;  1O88 A;  5C1C A;  3GRH A;  3LMW A;  4W8Q A;  2VBE A;  4EW9 A;  4YEL A;  1IA5 A;  1O8K A;  1JRG A;  3GQ9 A;  4Z05 A;  4OJ6 A;  1O8F A;  3WWG A;  2PYG A;  1EE6 A;  4XON A;  2NTB A;  4XQF A;  4XN0 A;  1RWR A;  1RMG A;  4XKV A;  4XOP A;  3ZSC A;  2VJI A;  1IDK A;  1PXZ A;  2X6X A;  2INV A;  2BSP A;  2UVF A;  2VBK A;  1VBL A;  2QY1 A;  3SUC A;  1PE9 A;  3EQN A;  3EQO A;  3KRG A;  1BHE A;  2QXZ A;  2VJJ A;  4OZZ A;  4XLC A;  1WMR A;  2PEC A;  4C2L A;  4OZY A;  4XOT A;  4XM3 A;  2NST A;  2NZM A;  4NK6 A;  2O17 A;  5AMV A;  4XLE A;  4I84 A;  4YZQ A;  2UVE A;  3VSU A;  1O8D A;  1JTA A;  4Z03 A;  1PLU A;  2X6W A;  1CZF A;  1OFM A; 
#chains in the Genus database with same CATH topology
 3GQ7 A;  4OJL A;  4XR6 A;  3LJY A;  4XN3 A;  1IB4 A;  4U49 A;  1OFL A;  3NAW A;  4XNF A;  1RU4 A;  3B4N A;  1LLZ A;  3NB2 A;  1O8I A;  2IOU G;  3B90 A;  3TH0 A;  4YEJ A;  5JMC B;  3P4G A;  1LLW A;  1O8H A;  4YZ0 A;  2VFM A;  1KQ5 A;  2EWE A;  4KH3 A;  4MR0 A;  4PMH A;  1QCX A;  4YCQ A;  4XLF A;  2O6W A;  2O0W A;  2VBM A;  3GQA A;  2INU A;  4W8T A;  2IQ7 A;  2PYH A;  4XKW A;  1DAB A;  4W8S A;  2BM5 A;  2XT4 A;  1KCC A;  2XTY A;  3H09 A;  4YZX A;  3ZPP A;  1KTW A;  2NT9 A;  2W7Z A;  4URR A;  4YZA A;  4YDT A;  4XLA A;  2O04 A;  2X6Y A;  1O8J A;  1O8E A;  2BM7 A;  2VFQ A;  3BH6 B;  1WXR A;  1K5C A;  1X0C A;  4OJP A;  2BM4 A;  1OOC A;  3JUR A;  2XTX A;  3RIQ A;  3VSV A;  2O1D A;  1TYX A;  1OGO X;  1QRB A;  3FY3 A;  1QQ1 A;  2O0V A;  4YC5 A;  1H80 A;  4AVZ A;  1O8L A;  1QA3 A;  1O8M A;  4XL9 A;  3GQ8 A;  2G0Y A;  5C1E A;  1OGM X;  2ODL A;  1HG8 A;  2NSP A;  5DNS A;  1DBG A;  2NTQ A;  1IDJ A;  3VMV A;  1TYV A;  4XOR A;  1QA1 A;  2Z8G A;  3SZE A;  1KCD A;  1TSP A;  1TYU A;  3T9G A;  2X85 A;  1QJV A;  1LM1 A;  2BX6 A;  2J8K A;  4OJO A;  1GQ8 A;  1K8F A;  4W8R A;  1K4Z A;  3VST A;  2QX3 A;  2NTP A;  4MXN A;  3B8Y A;  4JRA C;  1O8G A;  2X3H A;  4Z06 A;  1HF2 A;  4YEI A;  1XG2 A;  3PET A;  4OPW A;  2B0R A;  4OJ5 A;  2YUH A;  1BN8 A;  4HWV A;  3N6Z A;  4NK8 A;  1DBO A;  4XLH A;  4XMY A;  3UW0 A;  3VMW A;  3AK5 A;  3N90 A;  2XT2 A;  1AIR A;  2XC1 A;  2NT6 A;  1NHC A;  1O88 A;  3DU1 X;  4OM9 A;  1QA2 A;  5C1C A;  3GRH A;  3LMW A;  4W8Q A;  2VBE A;  4EW9 A;  4YEL A;  3SYJ A;  1IA5 A;  1O8K A;  1TYW A;  1JRG A;  3GQ9 A;  1EA0 A;  4Z05 A;  4OJ6 A;  4YFO A;  1O8F A;  3WWG A;  3PSZ A;  2PYG A;  1EZG A;  1EE6 A;  4XON A;  2NTB A;  4XQF A;  4XN0 A;  1L1I A;  4U4B A;  4V02 C;  3PSS A;  2VFO A;  3LYC A;  1RWR A;  1RMG A;  4XKV A;  3SQV A;  2BM6 A;  2VFP A;  2VFN A;  4XOP A;  1CLW A;  3ZSC A;  2VJI A;  1IDK A;  1PXZ A;  2QZA A;  2X6X A;  2INV A;  1QRC A;  2BSP A;  2UVF A;  5JLV C;  2VBK A;  3JX8 A;  1VBL A;  2QY1 A;  3SUC A;  1PE9 A;  3BH7 B;  3EQN A;  3EQO A;  3KRG A;  1BHE A;  2J8I A;  2QXZ A;  2VJJ A;  1OFD A;  4OZZ A;  4XLC A;  1WMR A;  2PEC A;  4C2L A;  4OZY A;  3ML3 A;  4XOT A;  4XM3 A;  2NST A;  2NZM A;  4NK6 A;  2O17 A;  2XTW A;  1OFE A;  4XLE A;  5AMV A;  4I84 A;  4YZQ A;  2UVE A;  3VSU A;  1O8D A;  1JTA A;  2QYU A;  2V5I A;  4Z03 A;  1PLU A;  1OFM A;  2X6W A;  3SY2 A;  1CZF A;  2F3L A; 
#chains in the Genus database with same CATH homology
 3GQ7 A;  4OJL A;  4XR6 A;  4XN3 A;  1IB4 A;  4U49 A;  1OFL A;  4XNF A;  1RU4 A;  3B4N A;  1O8I A;  3B90 A;  4YEJ A;  1O8H A;  4YZ0 A;  2EWE A;  4MR0 A;  4PMH A;  1QCX A;  4XLF A;  2O0W A;  2VBM A;  3GQA A;  2INU A;  4W8T A;  2IQ7 A;  2PYH A;  4XKW A;  4W8S A;  4YZX A;  3ZPP A;  1KTW A;  2NT9 A;  4URR A;  4YZA A;  4XLA A;  2O04 A;  2X6Y A;  1O8J A;  1O8E A;  1K5C A;  1X0C A;  4OJP A;  1OOC A;  3JUR A;  3VSV A;  2O1D A;  1OGO X;  3FY3 A;  2O0V A;  1H80 A;  4AVZ A;  1O8L A;  1O8M A;  4XL9 A;  3GQ8 A;  5C1E A;  1OGM X;  2ODL A;  1HG8 A;  2NSP A;  1DBG A;  2NTQ A;  1IDJ A;  3VMV A;  4XOR A;  2Z8G A;  1KCD A;  3T9G A;  2X85 A;  1QJV A;  4OJO A;  1GQ8 A;  4W8R A;  3VST A;  2QX3 A;  2NTP A;  4MXN A;  3B8Y A;  1O8G A;  2X3H A;  4Z06 A;  1XG2 A;  4U4B A;  4OJ5 A;  4XLH A;  1KCC A;  4HWV A;  1BN8 A;  4XMY A;  3VMW A;  4NK8 A;  1DBO A;  3UW0 A;  1AIR A;  2NT6 A;  1NHC A;  1O88 A;  5C1C A;  3GRH A;  3LMW A;  4W8Q A;  2VBE A;  4EW9 A;  4YEL A;  1IA5 A;  1O8K A;  1JRG A;  3GQ9 A;  4Z05 A;  4OJ6 A;  1O8F A;  3WWG A;  2PYG A;  1EE6 A;  4XON A;  2NTB A;  4XQF A;  4XN0 A;  1RWR A;  1RMG A;  4XKV A;  4XOP A;  3ZSC A;  2VJI A;  1IDK A;  1PXZ A;  2X6X A;  2INV A;  2BSP A;  2UVF A;  2VBK A;  1VBL A;  2QY1 A;  3SUC A;  1PE9 A;  3EQN A;  3EQO A;  3KRG A;  1BHE A;  2QXZ A;  2VJJ A;  4OZZ A;  4XLC A;  1WMR A;  2PEC A;  4C2L A;  4OZY A;  4XOT A;  4XM3 A;  2NST A;  2NZM A;  4NK6 A;  2O17 A;  5AMV A;  4XLE A;  4I84 A;  4YZQ A;  2UVE A;  3VSU A;  1O8D A;  1JTA A;  4Z03 A;  1PLU A;  2X6W A;  1CZF A;  1OFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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