1VBLA

Structure of the thermostable pectate lyase pl 47
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
416
structure length
416
Chain Sequence
KELGHEVLKPYDGWAAYGEGTTGGAMASPQNVFVVTNRTELIQALGGNNHTNQYNSVPKIIYVKGTIDLNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEVTWKPMFYHVIHPTPSVPALVKAKAGAGNLH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords pectate lyase 47
publication title Structural Basis for Thermostability of Pectate Lyase from Bacillus sp. TS 47
rcsb
source organism Bacillus sp. ts-47
total genus 157
structure length 416
sequence length 416
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2004-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1vblA00
2NTQA 1HG8A 1O8LA 4OJOA 3KRGA 3SUCA 2VJJA 4XLAA 3JURA 3ZPPA 4XKVA 1KTWA 4XOPA 1IA5A 4YELA 4W8RA 1K5CA 2ODLA 3VSTA 4MXNA 1JRGA 4EW9A 2VBMA 4U49A 4XLCA 1XG2A 1CZFA 4XN0A 1KCDA 4XL9A 1O8JA 1OOCA 1QCXA 4XONA 2NT9A 1AIRA 2X85A 2O04A 4OZZA 2QY1A 4XMYA 5C1EA 1GQ8A 3VMVA 2X6WA 4XORA 1QJVA 3EQOA 2UVEA 3VMWA 3B4NA 4URRA 2NT6A 2O0WA 3LMWA 4NK6A 1IB4A 4YZQA 3GQ7A 4XLHA 3GQAA 2Z8GA 2NSTA 4OJPA 3T9GA 1WMRA 4C2LA 4OJ6A 2EWEA 2IQ7A 3GRHA 4I84A 2NZMA 4YZAA 2VBEA 1O8GA 1DBOA 1O8EA 1OGMX 1H80A 3GQ8A 4XQFA 1RU4A 1O8HA 2NTPA 2X3HA 3FY3A 4W8SA 4MR0A 1VBLA 4YZ0A 1NHCA 2VJIA 4W8QA 2NSPA 4OJ5A 4PMHA 1EE6A 4XM3A 4YEJA 2O17A 1IDJA 2NTBA 2INVA 2O0VA 2X6YA 1O8IA 2UVFA 4AVZA 2PYGA 3UW0A 1RMGA 2PECA 1O8FA 1O88A 3VSVA 1O8DA 2PYHA 4OJLA 3EQNA 4NK8A 4HWVA 3WWGA 4XLFA 4Z03A 2VBKA 5AMVA 1KCCA 1PLUA 3ZSCA 1DBGA 2QXZA 2QX3A 2INUA 1O8KA 4XN3A 1PXZA 1RWRA 1PE9A 1IDKA 1OFMA 4XKWA 1OGOX 4XLEA 4Z05A 4XR6A 2O1DA 1X0CA 4XOTA 1JTAA 2BSPA 3B90A 1BN8A 4YZXA 1O8MA 4U4BA 1BHEA 1OFLA 3GQ9A 4XNFA 4Z06A 2X6XA 3VSUA 5C1CA 4OZYA 4W8TA 3B8YA
chains in the Genus database with same CATH superfamily
2VFQA 2NTQA 3SZEA 1HG8A 1O8LA 4OJOA 3KRGA 3LYCA 3SUCA 4OPWA 3JX8A 5DNSA 4YDTA 2VJJA 4XLAA 2F3LA 1EA0A 1OFDA 1QRCA 3JURA 2J8IA 3ZPPA 2QYUA 2IOUG 4XKVA 1KTWA 4XOPA 1IA5A 3NB2A 4YELA 4W8RA 1QRBA 2ODLA 1K5CA 3VSTA 4MXNA 1JRGA 4EW9A 2XTXA 2VBMA 4U49A 4XLCA 1XG2A 1CZFA 4XN0A 1KCDA 4XL9A 3N90A 3SQVA 1O8JA 1OOCA 2XT4A 1QCXA 4XONA 1DABA 2NT9A 1AIRA 2VFOA 2O04A 2X85A 2QY1A 4OZZA 4XMYA 1GQ8A 5C1EA 3VMVA 1WXRA 2X6WA 1TSPA 4XORA 1QJVA 2VFMA 3EQOA 1HF2A 1CLWA 2UVEA 3VMWA 3B4NA 4URRA 2NT6A 2BM5A 2O0WA 3LMWA 4NK6A 1TYVA 1IB4A 4YZQA 1QA3A 3GQ7A 3AK5A 4OM9A 4XLHA 3GQAA 2Z8GA 1LLZA 1LM1A 2BM7A 2NSTA 4OJPA 3T9GA 4V02C 1WMRA 4C2LA 4OJ6A 1EZGA 1K4ZA 2EWEA 4YC5A 3H09A 2B0RA 2IQ7A 3GRHA 4I84A 2NZMA 4YZAA 1L1IA 2VBEA 1O8GA 1DBOA 1O8EA 2XT2A 1OGMX 1H80A 3GQ8A 4XQFA 1RU4A 1O8HA 2NTPA 2X3HA 3FY3A 4W8SA 2BM4A 1K8FA 3DU1X 4MR0A 3TH0A 2V5IA 2VFPA 1VBLA 4YZ0A 1NHCA 5JLVC 2VJIA 3RIQA 4W8QA 2NSPA 3NAWA 4OJ5A 1LLWA 3PETA 4PMHA 1EE6A 4XM3A 3BH7B 4YEJA 3SYJA 4JRAC 2O17A 1IDJA 4KH3A 2NTBA 2INVA 2O0VA 2X6YA 3SY2A 1TYXA 1O8IA 2UVFA 4AVZA 3PSSA 2PYGA 1OFEA 3UW0A 1TYUA 2BX6A 4YEIA 1RMGA 2PECA 1O8FA 1O88A 4YFOA 3VSVA 1O8DA 2PYHA 4OJLA 3EQNA 4XN3A 2J8KA 1KQ5A 2QZAA 4HWVA 4NK8A 1QA1A 2O6WA 3WWGA 4XLFA 4Z03A 3LJYA 2VBKA 3ML3A 1QQ1A 5AMVA 1PLUA 3ZSCA 1KCCA 1DBGA 3BH6B 1TYWA 2QXZA 2XTYA 2QX3A 2INUA 1O8KA 2BM6A 1PXZA 1RWRA 1PE9A 1IDKA 1OFMA 4XKWA 1OGOX 4XLEA 4Z05A 4XR6A 2O1DA 1X0CA 4XOTA 2XC1A 1QA2A 1JTAA 2BSPA 2XTWA 3B90A 1BN8A 3P4GA 4YZXA 1O8MA 4U4BA 5JMCB 4YCQA 1BHEA 1OFLA 3N6ZA 3GQ9A 2W7ZA 4XNFA 4Z06A 2X6XA 3VSUA 3PSZA 2YUHA 5C1CA 2G0YA 2VFNA 4OZYA 4W8TA 3B8YA
chains in the Genus database with same CATH topology
2NTQA 1HG8A 1O8LA 4OJOA 3KRGA 3SUCA 2VJJA 4XLAA 3JURA 3ZPPA 4XKVA 1KTWA 4XOPA 1IA5A 4YELA 4W8RA 1K5CA 2ODLA 3VSTA 4MXNA 1JRGA 4EW9A 2VBMA 4U49A 4XLCA 1XG2A 1CZFA 4XN0A 1KCDA 4XL9A 1O8JA 1OOCA 1QCXA 4XONA 2NT9A 1AIRA 2X85A 2O04A 4OZZA 2QY1A 4XMYA 5C1EA 1GQ8A 3VMVA 2X6WA 4XORA 1QJVA 3EQOA 2UVEA 3VMWA 3B4NA 4URRA 2NT6A 2O0WA 3LMWA 4NK6A 1IB4A 4YZQA 3GQ7A 4XLHA 3GQAA 2Z8GA 2NSTA 4OJPA 3T9GA 1WMRA 4C2LA 4OJ6A 2EWEA 2IQ7A 3GRHA 4I84A 2NZMA 4YZAA 2VBEA 1O8GA 1DBOA 1O8EA 1OGMX 1H80A 3GQ8A 4XQFA 1RU4A 1O8HA 2NTPA 2X3HA 3FY3A 4W8SA 4MR0A 1VBLA 4YZ0A 1NHCA 2VJIA 4W8QA 2NSPA 4OJ5A 4PMHA 1EE6A 4XM3A 4YEJA 2O17A 1IDJA 2NTBA 2INVA 2O0VA 2X6YA 1O8IA 2UVFA 4AVZA 2PYGA 3UW0A 1RMGA 2PECA 1O8FA 1O88A 3VSVA 1O8DA 2PYHA 4OJLA 3EQNA 4NK8A 4HWVA 3WWGA 4XLFA 4Z03A 2VBKA 5AMVA 1KCCA 1PLUA 3ZSCA 1DBGA 2QXZA 2QX3A 2INUA 1O8KA 4XN3A 1PXZA 1RWRA 1PE9A 1IDKA 1OFMA 4XKWA 1OGOX 4XLEA 4Z05A 4XR6A 2O1DA 1X0CA 4XOTA 1JTAA 2BSPA 3B90A 1BN8A 4YZXA 1O8MA 4U4BA 1BHEA 1OFLA 3GQ9A 4XNFA 4Z06A 2X6XA 3VSUA 5C1CA 4OZYA 4W8TA 3B8YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NTQ A;  1HG8 A;  1O8L A;  4OJO A;  3KRG A;  3SUC A;  2VJJ A;  4XLA A;  3JUR A;  3ZPP A;  4XKV A;  1KTW A;  4XOP A;  1IA5 A;  4YEL A;  4W8R A;  1K5C A;  2ODL A;  3VST A;  4MXN A;  1JRG A;  4EW9 A;  2VBM A;  4U49 A;  4XLC A;  1XG2 A;  1CZF A;  4XN0 A;  1KCD A;  4XL9 A;  1O8J A;  1OOC A;  1QCX A;  4XON A;  2NT9 A;  1AIR A;  2X85 A;  2O04 A;  4OZZ A;  2QY1 A;  4XMY A;  5C1E A;  1GQ8 A;  3VMV A;  2X6W A;  4XOR A;  1QJV A;  3EQO A;  2UVE A;  3VMW A;  3B4N A;  4URR A;  2NT6 A;  2O0W A;  3LMW A;  4NK6 A;  1IB4 A;  4YZQ A;  3GQ7 A;  4XLH A;  3GQA A;  2Z8G A;  2NST A;  4OJP A;  3T9G A;  1WMR A;  4C2L A;  4OJ6 A;  2EWE A;  2IQ7 A;  3GRH A;  4I84 A;  2NZM A;  4YZA A;  2VBE A;  1O8G A;  1DBO A;  1O8E A;  1OGM X;  1H80 A;  3GQ8 A;  4XQF A;  1RU4 A;  1O8H A;  2NTP A;  2X3H A;  3FY3 A;  4W8S A;  4MR0 A;  1VBL A;  4YZ0 A;  1NHC A;  2VJI A;  4W8Q A;  2NSP A;  4OJ5 A;  4PMH A;  1EE6 A;  4XM3 A;  4YEJ A;  2O17 A;  1IDJ A;  2NTB A;  2INV A;  2O0V A;  2X6Y A;  1O8I A;  2UVF A;  4AVZ A;  2PYG A;  3UW0 A;  1RMG A;  2PEC A;  1O8F A;  1O88 A;  3VSV A;  1O8D A;  2PYH A;  4OJL A;  3EQN A;  4NK8 A;  4HWV A;  3WWG A;  4XLF A;  4Z03 A;  2VBK A;  5AMV A;  1KCC A;  1PLU A;  3ZSC A;  1DBG A;  2QXZ A;  2QX3 A;  2INU A;  1O8K A;  4XN3 A;  1PXZ A;  1RWR A;  1PE9 A;  1IDK A;  1OFM A;  4XKW A;  1OGO X;  4XLE A;  4Z05 A;  4XR6 A;  2O1D A;  1X0C A;  4XOT A;  1JTA A;  2BSP A;  3B90 A;  1BN8 A;  4YZX A;  1O8M A;  4U4B A;  1BHE A;  1OFL A;  3GQ9 A;  4XNF A;  4Z06 A;  2X6X A;  3VSU A;  5C1C A;  4OZY A;  4W8T A;  3B8Y A; 
#chains in the Genus database with same CATH topology
 2VFQ A;  2NTQ A;  3SZE A;  1HG8 A;  1O8L A;  4OJO A;  3KRG A;  3LYC A;  3SUC A;  4OPW A;  3JX8 A;  5DNS A;  4YDT A;  2VJJ A;  4XLA A;  2F3L A;  1EA0 A;  1OFD A;  1QRC A;  3JUR A;  2J8I A;  3ZPP A;  2QYU A;  2IOU G;  4XKV A;  1KTW A;  4XOP A;  1IA5 A;  3NB2 A;  4YEL A;  4W8R A;  1QRB A;  2ODL A;  1K5C A;  3VST A;  4MXN A;  1JRG A;  4EW9 A;  2XTX A;  2VBM A;  4U49 A;  4XLC A;  1XG2 A;  1CZF A;  4XN0 A;  1KCD A;  4XL9 A;  3N90 A;  3SQV A;  1O8J A;  1OOC A;  2XT4 A;  1QCX A;  4XON A;  1DAB A;  2NT9 A;  1AIR A;  2VFO A;  2O04 A;  2X85 A;  2QY1 A;  4OZZ A;  4XMY A;  1GQ8 A;  5C1E A;  3VMV A;  1WXR A;  2X6W A;  1TSP A;  4XOR A;  1QJV A;  2VFM A;  3EQO A;  1HF2 A;  1CLW A;  2UVE A;  3VMW A;  3B4N A;  4URR A;  2NT6 A;  2BM5 A;  2O0W A;  3LMW A;  4NK6 A;  1TYV A;  1IB4 A;  4YZQ A;  1QA3 A;  3GQ7 A;  3AK5 A;  4OM9 A;  4XLH A;  3GQA A;  2Z8G A;  1LLZ A;  1LM1 A;  2BM7 A;  2NST A;  4OJP A;  3T9G A;  4V02 C;  1WMR A;  4C2L A;  4OJ6 A;  1EZG A;  1K4Z A;  2EWE A;  4YC5 A;  3H09 A;  2B0R A;  2IQ7 A;  3GRH A;  4I84 A;  2NZM A;  4YZA A;  1L1I A;  2VBE A;  1O8G A;  1DBO A;  1O8E A;  2XT2 A;  1OGM X;  1H80 A;  3GQ8 A;  4XQF A;  1RU4 A;  1O8H A;  2NTP A;  2X3H A;  3FY3 A;  4W8S A;  2BM4 A;  1K8F A;  3DU1 X;  4MR0 A;  3TH0 A;  2V5I A;  2VFP A;  1VBL A;  4YZ0 A;  1NHC A;  5JLV C;  2VJI A;  3RIQ A;  4W8Q A;  2NSP A;  3NAW A;  4OJ5 A;  1LLW A;  3PET A;  4PMH A;  1EE6 A;  4XM3 A;  3BH7 B;  4YEJ A;  3SYJ A;  4JRA C;  2O17 A;  1IDJ A;  4KH3 A;  2NTB A;  2INV A;  2O0V A;  2X6Y A;  3SY2 A;  1TYX A;  1O8I A;  2UVF A;  4AVZ A;  3PSS A;  2PYG A;  1OFE A;  3UW0 A;  1TYU A;  2BX6 A;  4YEI A;  1RMG A;  2PEC A;  1O8F A;  1O88 A;  4YFO A;  3VSV A;  1O8D A;  2PYH A;  4OJL A;  3EQN A;  4XN3 A;  2J8K A;  1KQ5 A;  2QZA A;  4HWV A;  4NK8 A;  1QA1 A;  2O6W A;  3WWG A;  4XLF A;  4Z03 A;  3LJY A;  2VBK A;  3ML3 A;  1QQ1 A;  5AMV A;  1PLU A;  3ZSC A;  1KCC A;  1DBG A;  3BH6 B;  1TYW A;  2QXZ A;  2XTY A;  2QX3 A;  2INU A;  1O8K A;  2BM6 A;  1PXZ A;  1RWR A;  1PE9 A;  1IDK A;  1OFM A;  4XKW A;  1OGO X;  4XLE A;  4Z05 A;  4XR6 A;  2O1D A;  1X0C A;  4XOT A;  2XC1 A;  1QA2 A;  1JTA A;  2BSP A;  2XTW A;  3B90 A;  1BN8 A;  3P4G A;  4YZX A;  1O8M A;  4U4B A;  5JMC B;  4YCQ A;  1BHE A;  1OFL A;  3N6Z A;  3GQ9 A;  2W7Z A;  4XNF A;  4Z06 A;  2X6X A;  3VSU A;  3PSZ A;  2YUH A;  5C1C A;  2G0Y A;  2VFN A;  4OZY A;  4W8T A;  3B8Y A; 
#chains in the Genus database with same CATH homology
 2NTQ A;  1HG8 A;  1O8L A;  4OJO A;  3KRG A;  3SUC A;  2VJJ A;  4XLA A;  3JUR A;  3ZPP A;  4XKV A;  1KTW A;  4XOP A;  1IA5 A;  4YEL A;  4W8R A;  1K5C A;  2ODL A;  3VST A;  4MXN A;  1JRG A;  4EW9 A;  2VBM A;  4U49 A;  4XLC A;  1XG2 A;  1CZF A;  4XN0 A;  1KCD A;  4XL9 A;  1O8J A;  1OOC A;  1QCX A;  4XON A;  2NT9 A;  1AIR A;  2X85 A;  2O04 A;  4OZZ A;  2QY1 A;  4XMY A;  5C1E A;  1GQ8 A;  3VMV A;  2X6W A;  4XOR A;  1QJV A;  3EQO A;  2UVE A;  3VMW A;  3B4N A;  4URR A;  2NT6 A;  2O0W A;  3LMW A;  4NK6 A;  1IB4 A;  4YZQ A;  3GQ7 A;  4XLH A;  3GQA A;  2Z8G A;  2NST A;  4OJP A;  3T9G A;  1WMR A;  4C2L A;  4OJ6 A;  2EWE A;  2IQ7 A;  3GRH A;  4I84 A;  2NZM A;  4YZA A;  2VBE A;  1O8G A;  1DBO A;  1O8E A;  1OGM X;  1H80 A;  3GQ8 A;  4XQF A;  1RU4 A;  1O8H A;  2NTP A;  2X3H A;  3FY3 A;  4W8S A;  4MR0 A;  1VBL A;  4YZ0 A;  1NHC A;  2VJI A;  4W8Q A;  2NSP A;  4OJ5 A;  4PMH A;  1EE6 A;  4XM3 A;  4YEJ A;  2O17 A;  1IDJ A;  2NTB A;  2INV A;  2O0V A;  2X6Y A;  1O8I A;  2UVF A;  4AVZ A;  2PYG A;  3UW0 A;  1RMG A;  2PEC A;  1O8F A;  1O88 A;  3VSV A;  1O8D A;  2PYH A;  4OJL A;  3EQN A;  4NK8 A;  4HWV A;  3WWG A;  4XLF A;  4Z03 A;  2VBK A;  5AMV A;  1KCC A;  1PLU A;  3ZSC A;  1DBG A;  2QXZ A;  2QX3 A;  2INU A;  1O8K A;  4XN3 A;  1PXZ A;  1RWR A;  1PE9 A;  1IDK A;  1OFM A;  4XKW A;  1OGO X;  4XLE A;  4Z05 A;  4XR6 A;  2O1D A;  1X0C A;  4XOT A;  1JTA A;  2BSP A;  3B90 A;  1BN8 A;  4YZX A;  1O8M A;  4U4B A;  1BHE A;  1OFL A;  3GQ9 A;  4XNF A;  4Z06 A;  2X6X A;  3VSU A;  5C1C A;  4OZY A;  4W8T A;  3B8Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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