1VBLA

Structure of the thermostable pectate lyase pl 47
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
416
structure length
416
Chain Sequence
KELGHEVLKPYDGWAAYGEGTTGGAMASPQNVFVVTNRTELIQALGGNNHTNQYNSVPKIIYVKGTIDLNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEVTWKPMFYHVIHPTPSVPALVKAKAGAGNLH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords pectate lyase 47
publication title Structural Basis for Thermostability of Pectate Lyase from Bacillus sp. TS 47
rcsb
source organism Bacillus sp. ts-47
molecule tags Lyase
total genus 157
structure length 416
sequence length 416
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2004-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1vblA00
1KCDA 2INVA 2PYGA 1KTWA 2VJJA 2IQ7A 2UVEA 2X6XA 2Z8GA 4HWVA 2NTBA 1PE9A 4XN3A 4W8RA 3WWGA 3FY3A 4XONA 4XN0A 1PXZA 5C1CA 1X0CA 3ZSCA 1BHEA 4W8QA 3VMWA 3GQAA 1QCXA 4YZ0A 1DBGA 2NTPA 3EQOA 4PMHA 2X3HA 4U4BA 1O8LA 4OJ5A 1OOCA 4YEJA 2QXZA 1JRGA 3JURA 3EQNA 1BN8A 4OZYA 1K5CA 3GQ7A 4OJOA 4XLAA 3B8YA 3LMWA 1GQ8A 4OJ6A 1KCCA 2VJIA 3SUCA 1O8FA 5C1EA 1O8HA 3GRHA 1OGMX 2O1DA 2QY1A 2VBEA 2O04A 2NT9A 3B90A 4XOPA 2O17A 1RWRA 1AIRA 4YZQA 2X6YA 4MR0A 1EE6A 1O8EA 2NZMA 4Z03A 1PLUA 4URRA 4XKVA 3ZPPA 2BSPA 2O0WA 1OGOX 2O0VA 1RU4A 4XQFA 1NHCA 2X85A 2VBMA 4YZAA 4XM3A 1IDKA 1O8MA 4Z06A 1QJVA 4W8SA 4Z05A 1JTAA 4XLEA 4EW9A 2NT6A 3T9GA 4YELA 1OFMA 2UVFA 4XNFA 4XR6A 4NK8A 3VMVA 1O8IA 1O8JA 4OJPA 4OJLA 4W8TA 2X6WA 4XMYA 4MXNA 1OFLA 1O8GA 1O8DA 2PYHA 3VSUA 1H80A 2INUA 4U49A 3VSVA 3UW0A 1HG8A 1CZFA 1IA5A 4XORA 2QX3A 2NSTA 1IDJA 4YZXA 1RMGA 4NK6A 2PECA 1WMRA 4XLHA 1VBLA 2VBKA 2NTQA 3KRGA 1XG2A 3GQ8A 2NSPA 4XLCA 5AMVA 4AVZA 4OZZA 2ODLA 4XL9A 1IB4A 1DBOA 3B4NA 2EWEA 4C2LA 4XKWA 4XOTA 4I84A 4XLFA 3GQ9A 3VSTA 1O88A 1O8KA
chains in the Genus database with same CATH superfamily
1KCDA 2INVA 2PYGA 1KTWA 2XT4A 2VJJA 1QA3A 2IQ7A 2UVEA 1TYVA 2X6XA 3P4GA 2F3LA 2Z8GA 4HWVA 2NTBA 1PE9A 3BH6B 4XN3A 1QA1A 4KH3A 4W8RA 2BM7A 3WWGA 3FY3A 4XONA 4XN0A 5JMCB 1KQ5A 1PXZA 4OM9A 5C1CA 1X0CA 4YCQA 3ZSCA 1WXRA 1BHEA 2XC1A 4W8QA 3GQAA 1QCXA 2VFPA 3VMWA 2VFQA 4YZ0A 2J8IA 1DBGA 2BM4A 2NTPA 3EQOA 2X3HA 4PMHA 4U4BA 3PSZA 1O8LA 4OJ5A 1OOCA 4YEJA 1JRGA 2QXZA 3JURA 3EQNA 1BN8A 4OZYA 1K5CA 3GQ7A 4OJOA 4XLAA 3B8YA 3LMWA 1GQ8A 4OJ6A 1KCCA 2VJIA 3SUCA 1O8FA 5C1EA 1O8HA 2G0YA 3GRHA 3NAWA 1OGMX 2O1DA 2QY1A 4YFOA 2VBEA 2O04A 2NT9A 1QRCA 3B90A 2VFNA 4XOPA 1DABA 2O17A 1RWRA 3SY2A 1AIRA 2BX6A 4YZQA 1HF2A 2X6YA 1TYXA 4MR0A 1EZGA 1EE6A 1O8EA 2NZMA 4Z03A 1LM1A 1PLUA 4URRA 4YDTA 3PETA 4XKVA 1EA0A 3ZPPA 4YC5A 1TYUA 2BSPA 2O0WA 3NB2A 4JRAC 1OGOX 2O0VA 1RU4A 2BM6A 4XQFA 1K8FA 1NHCA 2VFOA 3H09A 3RIQA 2X85A 2VBMA 3JX8A 4YZAA 4XM3A 2XTYA 2V5IA 2B0RA 2J8KA 1IDKA 2YUHA 2XT2A 1O8MA 3N6ZA 4Z06A 3BH7B 1QJVA 4W8SA 2XTWA 4Z05A 1QA2A 1JTAA 4XLEA 4EW9A 2NT6A 4YEIA 3N90A 3T9GA 4YELA 3SQVA 1OFMA 2UVFA 4XNFA 3AK5A 4XR6A 4NK8A 3VMVA 3TH0A 1LLWA 1O8IA 1O8JA 3ML3A 4OJPA 1L1IA 3DU1X 1OFEA 4OJLA 5DNSA 4W8TA 2X6WA 4XMYA 4MXNA 1OFLA 1O8GA 1O8DA 2QYUA 2PYHA 4V02C 3VSUA 1H80A 2INUA 4U49A 3PSSA 2IOUG 1CLWA 3UW0A 1QRBA 3VSVA 3LYCA 1HG8A 1CZFA 1IA5A 4XORA 2QX3A 2NSTA 1IDJA 2BM5A 4YZXA 1RMGA 4NK6A 2O6WA 2PECA 1WMRA 4XLHA 3SYJA 3SZEA 1VBLA 2VBKA 2NTQA 1OFDA 5JLVC 3KRGA 2VFMA 1XG2A 3GQ8A 2NSPA 2QZAA 4XLCA 5AMVA 4AVZA 4OZZA 4OPWA 2ODLA 4XL9A 1K4ZA 1LLZA 1TYWA 1QQ1A 1IB4A 2W7ZA 1DBOA 3B4NA 2EWEA 4C2LA 1TSPA 3LJYA 4XKWA 4I84A 4XLFA 3GQ9A 4XOTA 1O88A 3VSTA 2XTXA 1O8KA
chains in the Genus database with same CATH topology
1KCDA 2INVA 2PYGA 1KTWA 2VJJA 2IQ7A 2UVEA 2X6XA 2Z8GA 4HWVA 2NTBA 1PE9A 4XN3A 4W8RA 3WWGA 3FY3A 4XONA 4XN0A 1PXZA 5C1CA 1X0CA 3ZSCA 1BHEA 4W8QA 3VMWA 3GQAA 1QCXA 4YZ0A 1DBGA 2NTPA 3EQOA 4PMHA 2X3HA 4U4BA 1O8LA 4OJ5A 1OOCA 4YEJA 2QXZA 1JRGA 3JURA 3EQNA 1BN8A 4OZYA 1K5CA 3GQ7A 4OJOA 4XLAA 3B8YA 3LMWA 1GQ8A 4OJ6A 1KCCA 2VJIA 3SUCA 1O8FA 5C1EA 1O8HA 3GRHA 1OGMX 2O1DA 2QY1A 2VBEA 2O04A 2NT9A 3B90A 4XOPA 2O17A 1RWRA 1AIRA 4YZQA 2X6YA 4MR0A 1EE6A 1O8EA 2NZMA 4Z03A 1PLUA 4URRA 4XKVA 3ZPPA 2BSPA 2O0WA 1OGOX 2O0VA 1RU4A 4XQFA 1NHCA 2X85A 2VBMA 4YZAA 4XM3A 1IDKA 1O8MA 4Z06A 1QJVA 4W8SA 4Z05A 1JTAA 4XLEA 4EW9A 2NT6A 3T9GA 4YELA 1OFMA 2UVFA 4XNFA 4XR6A 4NK8A 3VMVA 1O8IA 1O8JA 4OJPA 4OJLA 4W8TA 2X6WA 4XMYA 4MXNA 1OFLA 1O8GA 1O8DA 2PYHA 3VSUA 1H80A 2INUA 4U49A 3VSVA 3UW0A 1HG8A 1CZFA 1IA5A 4XORA 2QX3A 2NSTA 1IDJA 4YZXA 1RMGA 4NK6A 2PECA 1WMRA 4XLHA 1VBLA 2VBKA 2NTQA 3KRGA 1XG2A 3GQ8A 2NSPA 4XLCA 5AMVA 4AVZA 4OZZA 2ODLA 4XL9A 1IB4A 1DBOA 3B4NA 2EWEA 4C2LA 4XKWA 4XOTA 4I84A 4XLFA 3GQ9A 3VSTA 1O88A 1O8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KCD A;  2INV A;  2PYG A;  1KTW A;  2VJJ A;  2IQ7 A;  2UVE A;  2X6X A;  2Z8G A;  4HWV A;  2NTB A;  1PE9 A;  4XN3 A;  4W8R A;  3WWG A;  3FY3 A;  4XON A;  4XN0 A;  1PXZ A;  5C1C A;  1X0C A;  3ZSC A;  1BHE A;  4W8Q A;  3VMW A;  3GQA A;  1QCX A;  4YZ0 A;  1DBG A;  2NTP A;  3EQO A;  4PMH A;  2X3H A;  4U4B A;  1O8L A;  4OJ5 A;  1OOC A;  4YEJ A;  2QXZ A;  1JRG A;  3JUR A;  3EQN A;  1BN8 A;  4OZY A;  1K5C A;  3GQ7 A;  4OJO A;  4XLA A;  3B8Y A;  3LMW A;  1GQ8 A;  4OJ6 A;  1KCC A;  2VJI A;  3SUC A;  1O8F A;  5C1E A;  1O8H A;  3GRH A;  1OGM X;  2O1D A;  2QY1 A;  2VBE A;  2O04 A;  2NT9 A;  3B90 A;  4XOP A;  2O17 A;  1RWR A;  1AIR A;  4YZQ A;  2X6Y A;  4MR0 A;  1EE6 A;  1O8E A;  2NZM A;  4Z03 A;  1PLU A;  4URR A;  4XKV A;  3ZPP A;  2BSP A;  2O0W A;  1OGO X;  2O0V A;  1RU4 A;  4XQF A;  1NHC A;  2X85 A;  2VBM A;  4YZA A;  4XM3 A;  1IDK A;  1O8M A;  4Z06 A;  1QJV A;  4W8S A;  4Z05 A;  1JTA A;  4XLE A;  4EW9 A;  2NT6 A;  3T9G A;  4YEL A;  1OFM A;  2UVF A;  4XNF A;  4XR6 A;  4NK8 A;  3VMV A;  1O8I A;  1O8J A;  4OJP A;  4OJL A;  4W8T A;  2X6W A;  4XMY A;  4MXN A;  1OFL A;  1O8G A;  1O8D A;  2PYH A;  3VSU A;  1H80 A;  2INU A;  4U49 A;  3VSV A;  3UW0 A;  1HG8 A;  1CZF A;  1IA5 A;  4XOR A;  2QX3 A;  2NST A;  1IDJ A;  4YZX A;  1RMG A;  4NK6 A;  2PEC A;  1WMR A;  4XLH A;  1VBL A;  2VBK A;  2NTQ A;  3KRG A;  1XG2 A;  3GQ8 A;  2NSP A;  4XLC A;  5AMV A;  4AVZ A;  4OZZ A;  2ODL A;  4XL9 A;  1IB4 A;  1DBO A;  3B4N A;  2EWE A;  4C2L A;  4XKW A;  4XOT A;  4I84 A;  4XLF A;  3GQ9 A;  3VST A;  1O88 A;  1O8K A; 
#chains in the Genus database with same CATH topology
 1KCD A;  2INV A;  2PYG A;  1KTW A;  2XT4 A;  2VJJ A;  1QA3 A;  2IQ7 A;  2UVE A;  1TYV A;  2X6X A;  3P4G A;  2F3L A;  2Z8G A;  4HWV A;  2NTB A;  1PE9 A;  3BH6 B;  4XN3 A;  1QA1 A;  4KH3 A;  4W8R A;  2BM7 A;  3WWG A;  3FY3 A;  4XON A;  4XN0 A;  5JMC B;  1KQ5 A;  1PXZ A;  4OM9 A;  5C1C A;  1X0C A;  4YCQ A;  3ZSC A;  1WXR A;  1BHE A;  2XC1 A;  4W8Q A;  3GQA A;  1QCX A;  2VFP A;  3VMW A;  2VFQ A;  4YZ0 A;  2J8I A;  1DBG A;  2BM4 A;  2NTP A;  3EQO A;  2X3H A;  4PMH A;  4U4B A;  3PSZ A;  1O8L A;  4OJ5 A;  1OOC A;  4YEJ A;  1JRG A;  2QXZ A;  3JUR A;  3EQN A;  1BN8 A;  4OZY A;  1K5C A;  3GQ7 A;  4OJO A;  4XLA A;  3B8Y A;  3LMW A;  1GQ8 A;  4OJ6 A;  1KCC A;  2VJI A;  3SUC A;  1O8F A;  5C1E A;  1O8H A;  2G0Y A;  3GRH A;  3NAW A;  1OGM X;  2O1D A;  2QY1 A;  4YFO A;  2VBE A;  2O04 A;  2NT9 A;  1QRC A;  3B90 A;  2VFN A;  4XOP A;  1DAB A;  2O17 A;  1RWR A;  3SY2 A;  1AIR A;  2BX6 A;  4YZQ A;  1HF2 A;  2X6Y A;  1TYX A;  4MR0 A;  1EZG A;  1EE6 A;  1O8E A;  2NZM A;  4Z03 A;  1LM1 A;  1PLU A;  4URR A;  4YDT A;  3PET A;  4XKV A;  1EA0 A;  3ZPP A;  4YC5 A;  1TYU A;  2BSP A;  2O0W A;  3NB2 A;  4JRA C;  1OGO X;  2O0V A;  1RU4 A;  2BM6 A;  4XQF A;  1K8F A;  1NHC A;  2VFO A;  3H09 A;  3RIQ A;  2X85 A;  2VBM A;  3JX8 A;  4YZA A;  4XM3 A;  2XTY A;  2V5I A;  2B0R A;  2J8K A;  1IDK A;  2YUH A;  2XT2 A;  1O8M A;  3N6Z A;  4Z06 A;  3BH7 B;  1QJV A;  4W8S A;  2XTW A;  4Z05 A;  1QA2 A;  1JTA A;  4XLE A;  4EW9 A;  2NT6 A;  4YEI A;  3N90 A;  3T9G A;  4YEL A;  3SQV A;  1OFM A;  2UVF A;  4XNF A;  3AK5 A;  4XR6 A;  4NK8 A;  3VMV A;  3TH0 A;  1LLW A;  1O8I A;  1O8J A;  3ML3 A;  4OJP A;  1L1I A;  3DU1 X;  1OFE A;  4OJL A;  5DNS A;  4W8T A;  2X6W A;  4XMY A;  4MXN A;  1OFL A;  1O8G A;  1O8D A;  2QYU A;  2PYH A;  4V02 C;  3VSU A;  1H80 A;  2INU A;  4U49 A;  3PSS A;  2IOU G;  1CLW A;  3UW0 A;  1QRB A;  3VSV A;  3LYC A;  1HG8 A;  1CZF A;  1IA5 A;  4XOR A;  2QX3 A;  2NST A;  1IDJ A;  2BM5 A;  4YZX A;  1RMG A;  4NK6 A;  2O6W A;  2PEC A;  1WMR A;  4XLH A;  3SYJ A;  3SZE A;  1VBL A;  2VBK A;  2NTQ A;  1OFD A;  5JLV C;  3KRG A;  2VFM A;  1XG2 A;  3GQ8 A;  2NSP A;  2QZA A;  4XLC A;  5AMV A;  4AVZ A;  4OZZ A;  4OPW A;  2ODL A;  4XL9 A;  1K4Z A;  1LLZ A;  1TYW A;  1QQ1 A;  1IB4 A;  2W7Z A;  1DBO A;  3B4N A;  2EWE A;  4C2L A;  1TSP A;  3LJY A;  4XKW A;  4I84 A;  4XLF A;  3GQ9 A;  4XOT A;  1O88 A;  3VST A;  2XTX A;  1O8K A; 
#chains in the Genus database with same CATH homology
 1KCD A;  2INV A;  2PYG A;  1KTW A;  2VJJ A;  2IQ7 A;  2UVE A;  2X6X A;  2Z8G A;  4HWV A;  2NTB A;  1PE9 A;  4XN3 A;  4W8R A;  3WWG A;  3FY3 A;  4XON A;  4XN0 A;  1PXZ A;  5C1C A;  1X0C A;  3ZSC A;  1BHE A;  4W8Q A;  3VMW A;  3GQA A;  1QCX A;  4YZ0 A;  1DBG A;  2NTP A;  3EQO A;  4PMH A;  2X3H A;  4U4B A;  1O8L A;  4OJ5 A;  1OOC A;  4YEJ A;  2QXZ A;  1JRG A;  3JUR A;  3EQN A;  1BN8 A;  4OZY A;  1K5C A;  3GQ7 A;  4OJO A;  4XLA A;  3B8Y A;  3LMW A;  1GQ8 A;  4OJ6 A;  1KCC A;  2VJI A;  3SUC A;  1O8F A;  5C1E A;  1O8H A;  3GRH A;  1OGM X;  2O1D A;  2QY1 A;  2VBE A;  2O04 A;  2NT9 A;  3B90 A;  4XOP A;  2O17 A;  1RWR A;  1AIR A;  4YZQ A;  2X6Y A;  4MR0 A;  1EE6 A;  1O8E A;  2NZM A;  4Z03 A;  1PLU A;  4URR A;  4XKV A;  3ZPP A;  2BSP A;  2O0W A;  1OGO X;  2O0V A;  1RU4 A;  4XQF A;  1NHC A;  2X85 A;  2VBM A;  4YZA A;  4XM3 A;  1IDK A;  1O8M A;  4Z06 A;  1QJV A;  4W8S A;  4Z05 A;  1JTA A;  4XLE A;  4EW9 A;  2NT6 A;  3T9G A;  4YEL A;  1OFM A;  2UVF A;  4XNF A;  4XR6 A;  4NK8 A;  3VMV A;  1O8I A;  1O8J A;  4OJP A;  4OJL A;  4W8T A;  2X6W A;  4XMY A;  4MXN A;  1OFL A;  1O8G A;  1O8D A;  2PYH A;  3VSU A;  1H80 A;  2INU A;  4U49 A;  3VSV A;  3UW0 A;  1HG8 A;  1CZF A;  1IA5 A;  4XOR A;  2QX3 A;  2NST A;  1IDJ A;  4YZX A;  1RMG A;  4NK6 A;  2PEC A;  1WMR A;  4XLH A;  1VBL A;  2VBK A;  2NTQ A;  3KRG A;  1XG2 A;  3GQ8 A;  2NSP A;  4XLC A;  5AMV A;  4AVZ A;  4OZZ A;  2ODL A;  4XL9 A;  1IB4 A;  1DBO A;  3B4N A;  2EWE A;  4C2L A;  4XKW A;  4XOT A;  4I84 A;  4XLF A;  3GQ9 A;  3VST A;  1O88 A;  1O8K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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