1EZGA

Crystal structure of antifreeze protein from the beetle, tenebrio molitor
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
82
structure length
82
Chain Sequence
QCTGGADCTSCTGACTGCGNCPNAVTCTNSQHCVKANTCTGSTDCNTAQTCTNSKDCFEANTCTDSTNCYKATACTNSSGCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords THERMAL HYSTERESIS PROTEIN ISOFORM YL-1
publication title Mimicry of ice structure by surface hydroxyls and water of a beta-helix antifreeze protein.
pubmed doi rcsb
source organism Tenebrio molitor
total genus 38
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02420 AFP Insect antifreeze protein repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.50 Mainly Beta 3 Solenoid Pectate Lyase C-like Insect antifreeze protein 1ezgA00
1L1IA 1EZGA
chains in the Genus database with same CATH superfamily
3VSVA 1JTAA 4OZYA 2INVA 3LMWA 3DU1X 2B0RA 2BM5A 2PECA 1HG8A 2VFMA 1JRGA 2QY1A 2IQ7A 3T9GA 3ZPPA 1TYUA 1DABA 5C1CA 3SQVA 1RWRA 2VFNA 1IA5A 5AMVA 4XOPA 3GRHA 4NK8A 3SYJA 1QJVA 4XMYA 1O8DA 3ZSCA 1RU4A 1TYXA 1QRCA 1EE6A 2QZAA 1CLWA 1K4ZA 4Z03A 1OOCA 3VSTA 2O6WA 2X3HA 1QQ1A 3PETA 2VJIA 5JMCB 4OJ6A 1QCXA 1K5CA 4YZAA 2NTPA 2X6YA 2PYHA 3BH7B 3JX8A 3UW0A 4I84A 3VMWA 1EZGA 1XG2A 3VSUA 4C2LA 3NB2A 1PXZA 2NT9A 4OZZA 1NHCA 3AK5A 4XL9A 4XLCA 2PYGA 2NTQA 3FY3A 4Z06A 4OPWA 2X85A 1O8LA 2NZMA 1KQ5A 2X6WA 1IDKA 1RMGA 4NK6A 4XKVA 2BSPA 4V02C 4XONA 1KCDA 3LJYA 3BH6B 2NT6A 3LYCA 4XLAA 2O04A 1GQ8A 2J8KA 4MR0A 4HWVA 3B4NA 2XT4A 2X6XA 4XLHA 4YDTA 2XTYA 4Z05A 3GQ8A 3SUCA 4AVZA 2BM7A 1AIRA 4XQFA 2BM6A 3SZEA 4XKWA 4JRAC 3WWGA 3GQ7A 2XTXA 1TSPA 3PSSA 2O0VA 1K8FA 1OGOX 5DNSA 1IDJA 4U49A 4YFOA 3ML3A 4XN0A 4OJPA 4W8RA 3GQAA 2VBMA 4YZQA 4YZ0A 4XLFA 1O8KA 1TYVA 2NSTA 1O8MA 1OFEA 2NTBA 1QA1A 2QXZA 4XORA 2XTWA 4YCQA 4MXNA 2NSPA 1OFLA 1X0CA 3N6ZA 3H09A 1O8HA 1VBLA 1HF2A 2O1DA 1H80A 1LM1A 4U4BA 3B90A 4YEIA 1WMRA 3SY2A 1O88A 1LLZA 1LLWA 2IOUG 4W8QA 4XLEA 1DBOA 2F3LA 1O8IA 2VFOA 2XT2A 2VBEA 4YC5A 4URRA 4EW9A 1O8FA 1CZFA 2QYUA 1OGMX 3EQNA 4OJ5A 4YZXA 1QRBA 2VBKA 3N90A 4PMHA 4YELA 3TH0A 2ODLA 2UVFA 2BM4A 1O8EA 4W8SA 1QA2A 1PE9A 2INUA 3KRGA 1BHEA 1OFMA 1PLUA 4KH3A 4XN3A 1L1IA 2O17A 2VFQA 2EWEA 1EA0A 3PSZA 4XOTA 3JURA 4YEJA 3RIQA 2V5IA 1DBGA 1KTWA 3NAWA 4OJOA 1QA3A 1WXRA 2QX3A 1IB4A 4XR6A 1KCCA 2UVEA 1BN8A 1O8JA 3B8YA 4XNFA 2G0YA 2VFPA 4XM3A 1O8GA 2BX6A 2YUHA 2XC1A 4OM9A 3GQ9A 4OJLA 1TYWA 3P4GA 2O0WA 5JLVC 2VJJA 2W7ZA 5C1EA 3EQOA 2Z8GA 4W8TA 2J8IA 1OFDA 3VMVA
chains in the Genus database with same CATH topology
3GQ8A 1L0SA 1EWWA 1Z2FA 3SUCA 1L1IA 1M8NA 3GQ7A 1EZGA 3GQAA 3GQ9A 1N4IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L1I A;  1EZG A; 
#chains in the Genus database with same CATH topology
 3VSV A;  1JTA A;  4OZY A;  2INV A;  3LMW A;  3DU1 X;  2B0R A;  2BM5 A;  2PEC A;  1HG8 A;  2VFM A;  1JRG A;  2QY1 A;  2IQ7 A;  3T9G A;  3ZPP A;  1TYU A;  1DAB A;  5C1C A;  3SQV A;  1RWR A;  2VFN A;  1IA5 A;  5AMV A;  4XOP A;  3GRH A;  4NK8 A;  3SYJ A;  1QJV A;  4XMY A;  1O8D A;  3ZSC A;  1RU4 A;  1TYX A;  1QRC A;  1EE6 A;  2QZA A;  1CLW A;  1K4Z A;  4Z03 A;  1OOC A;  3VST A;  2O6W A;  2X3H A;  1QQ1 A;  3PET A;  2VJI A;  5JMC B;  4OJ6 A;  1QCX A;  1K5C A;  4YZA A;  2NTP A;  2X6Y A;  2PYH A;  3BH7 B;  3JX8 A;  3UW0 A;  4I84 A;  3VMW A;  1EZG A;  1XG2 A;  3VSU A;  4C2L A;  3NB2 A;  1PXZ A;  2NT9 A;  4OZZ A;  1NHC A;  3AK5 A;  4XL9 A;  4XLC A;  2PYG A;  2NTQ A;  3FY3 A;  4Z06 A;  4OPW A;  2X85 A;  1O8L A;  2NZM A;  1KQ5 A;  2X6W A;  1IDK A;  1RMG A;  4NK6 A;  4XKV A;  2BSP A;  4V02 C;  4XON A;  1KCD A;  3LJY A;  3BH6 B;  2NT6 A;  3LYC A;  4XLA A;  2O04 A;  1GQ8 A;  2J8K A;  4MR0 A;  4HWV A;  3B4N A;  2XT4 A;  2X6X A;  4XLH A;  4YDT A;  2XTY A;  4Z05 A;  3GQ8 A;  3SUC A;  4AVZ A;  2BM7 A;  1AIR A;  4XQF A;  2BM6 A;  3SZE A;  4XKW A;  4JRA C;  3WWG A;  3GQ7 A;  2XTX A;  1TSP A;  3PSS A;  2O0V A;  1K8F A;  1OGO X;  5DNS A;  1IDJ A;  4U49 A;  4YFO A;  3ML3 A;  4XN0 A;  4OJP A;  4W8R A;  3GQA A;  2VBM A;  4YZQ A;  4YZ0 A;  4XLF A;  1O8K A;  1TYV A;  2NST A;  1O8M A;  1OFE A;  2NTB A;  1QA1 A;  2QXZ A;  4XOR A;  2XTW A;  4YCQ A;  4MXN A;  2NSP A;  1OFL A;  1X0C A;  3N6Z A;  3H09 A;  1O8H A;  1VBL A;  1HF2 A;  2O1D A;  1H80 A;  1LM1 A;  4U4B A;  3B90 A;  4YEI A;  1WMR A;  3SY2 A;  1O88 A;  1LLZ A;  1LLW A;  2IOU G;  4W8Q A;  4XLE A;  1DBO A;  2F3L A;  1O8I A;  2VFO A;  2XT2 A;  2VBE A;  4YC5 A;  4URR A;  4EW9 A;  1O8F A;  1CZF A;  2QYU A;  1OGM X;  3EQN A;  4OJ5 A;  4YZX A;  1QRB A;  2VBK A;  3N90 A;  4PMH A;  4YEL A;  3TH0 A;  2ODL A;  2UVF A;  2BM4 A;  1O8E A;  4W8S A;  1QA2 A;  1PE9 A;  2INU A;  3KRG A;  1BHE A;  1OFM A;  1PLU A;  4KH3 A;  4XN3 A;  1L1I A;  2O17 A;  2VFQ A;  2EWE A;  1EA0 A;  3PSZ A;  4XOT A;  3JUR A;  4YEJ A;  3RIQ A;  2V5I A;  1DBG A;  1KTW A;  3NAW A;  4OJO A;  1QA3 A;  1WXR A;  2QX3 A;  1IB4 A;  4XR6 A;  1KCC A;  2UVE A;  1BN8 A;  1O8J A;  3B8Y A;  4XNF A;  2G0Y A;  2VFP A;  4XM3 A;  1O8G A;  2BX6 A;  2YUH A;  2XC1 A;  4OM9 A;  3GQ9 A;  4OJL A;  1TYW A;  3P4G A;  2O0W A;  5JLV C;  2VJJ A;  2W7Z A;  5C1E A;  3EQO A;  2Z8G A;  4W8T A;  2J8I A;  1OFD A;  3VMV A; 
#chains in the Genus database with same CATH homology
 3GQ8 A;  1L0S A;  1EWW A;  1Z2F A;  3SUC A;  1L1I A;  1M8N A;  3GQ7 A;  1EZG A;  3GQA A;  3GQ9 A;  1N4I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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