1EZGA

Crystal structure of antifreeze protein from the beetle, tenebrio molitor
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
82
structure length
82
Chain Sequence
b'QCTGGADCTSCTGACTGCGNCPNAVTCTNSQHCVKANTCTGSTDCNTAQTCTNSKDCFEANTCTDSTNCYKATACTNSSGCP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords THERMAL HYSTERESIS PROTEIN ISOFORM YL-1
publication title Mimicry of ice structure by surface hydroxyls and water of a beta-helix antifreeze protein.
pubmed doi rcsb
source organism Tenebrio molitor
molecule tags Antifreeze protein
total genus 38
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02420 AFP Insect antifreeze protein repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.50 Mainly Beta 3 Solenoid Pectate Lyase C-like Insect antifreeze protein 1ezgA00
1EZGA 1L1IA
chains in the Genus database with same CATH superfamily
1O88A 2G0YA 5JMCB 1JTAA 2X6WA 1DABA 4PMHA 2EWEA 4AVZA 1K8FA 4V02C 4OZYA 1WXRA 1KCDA 2NT9A 1O8GA 1PLUA 4XLAA 2J8IA 1BHEA 1QA1A 2XTWA 4XN3A 3T9GA 2XTYA 3KRGA 4Z05A 4C2LA 2J8KA 1QA2A 1QJVA 2BSPA 4YEJA 4Z03A 4XM3A 1O8IA 1JRGA 4XONA 1KCCA 2NZMA 2VFOA 3TH0A 2YUHA 3B90A 4XOTA 2Z8GA 3VSVA 2QY1A 1DBGA 1TYXA 1K4ZA 4XLHA 1H80A 2XC1A 4I84A 4XL9A 4XN0A 5C1CA 2NSPA 4OJPA 3SY2A 4XQFA 2QZAA 1NHCA 2F3LA 1IB4A 3SYJA 3NB2A 4YDTA 3WWGA 2O0VA 2PYGA 1WMRA 2BM7A 2NT6A 3N6ZA 4XLCA 3ZPPA 1K5CA 1HF2A 3PSSA 4XORA 2X6YA 1O8DA 3RIQA 1GQ8A 1X0CA 1QCXA 2O04A 1CZFA 3LYCA 1KTWA 1OGOX 1TYVA 4OJLA 4YCQA 1O8MA 2UVEA 5DNSA 5AMVA 1DBOA 1OGMX 2QXZA 4YZQA 1PXZA 4XKVA 2NSTA 2NTPA 2BM5A 2NTBA 1EA0A 2O17A 3PSZA 1VBLA 4OM9A 3VMVA 2O0WA 1BN8A 3N90A 5JLVC 3P4GA 2XT2A 3SUCA 1L1IA 4URRA 2ODLA 4HWVA 1O8EA 3AK5A 1TYWA 2BM4A 4YC5A 1OOCA 1QQ1A 2O6WA 4YFOA 1XG2A 3BH6B 2XTXA 4W8QA 1KQ5A 3JX8A 4YELA 2IOUG 2X85A 1QRCA 4NK8A 3VSUA 1OFEA 2VFPA 3EQNA 3UW0A 4MXNA 2O1DA 2INUA 3SQVA 1EZGA 2B0RA 2VBEA 2BX6A 2VFMA 2VJIA 4OZZA 4EW9A 1O8FA 2VJJA 2NTQA 2VBMA 1QA3A 2V5IA 4KH3A 4OJ5A 1EE6A 1HG8A 1IDJA 2PYHA 3GRHA 3VSTA 1CLWA 3FY3A 3ZSCA 1QRBA 4XLFA 3GQ8A 3LJYA 1TYUA 4XNFA 1O8JA 4XR6A 3DU1X 3EQOA 4MR0A 1IA5A 3BH7B 1OFDA 4U4BA 3GQ7A 2PECA 4XOPA 1IDKA 1O8KA 2VFQA 3B8YA 3LMWA 3ML3A 1RWRA 4OJ6A 2VFNA 3GQ9A 1PE9A 4U49A 2INVA 4W8TA 4JRAC 1OFMA 4YZXA 4OPWA 4W8SA 3PETA 1LM1A 4XKWA 1LLWA 3SZEA 2IQ7A 4OJOA 1OFLA 1TSPA 4W8RA 4XLEA 1AIRA 1RU4A 3JURA 4NK6A 2X6XA 1O8HA 3H09A 2QYUA 3NAWA 2VBKA 1O8LA 4Z06A 4XMYA 2QX3A 3B4NA 2X3HA 2XT4A 2BM6A 3GQAA 5C1EA 1LLZA 3VMWA 4YEIA 2W7ZA 2UVFA 4YZAA 4YZ0A 1RMGA
chains in the Genus database with same CATH topology
1N4IA 3GQ7A 3GQAA 3SUCA 1L1IA 1M8NA 3GQ8A 1EZGA 3GQ9A 1Z2FA 1L0SA 1EWWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EZG A;  1L1I A; 
#chains in the Genus database with same CATH topology
 1O88 A;  2G0Y A;  5JMC B;  1JTA A;  2X6W A;  1DAB A;  4PMH A;  2EWE A;  4AVZ A;  1K8F A;  4V02 C;  4OZY A;  1WXR A;  1KCD A;  2NT9 A;  1O8G A;  1PLU A;  4XLA A;  2J8I A;  1BHE A;  1QA1 A;  2XTW A;  4XN3 A;  3T9G A;  2XTY A;  3KRG A;  4Z05 A;  4C2L A;  2J8K A;  1QA2 A;  1QJV A;  2BSP A;  4YEJ A;  4Z03 A;  4XM3 A;  1O8I A;  1JRG A;  4XON A;  1KCC A;  2NZM A;  2VFO A;  3TH0 A;  2YUH A;  3B90 A;  4XOT A;  2Z8G A;  3VSV A;  2QY1 A;  1DBG A;  1TYX A;  1K4Z A;  4XLH A;  1H80 A;  2XC1 A;  4I84 A;  4XL9 A;  4XN0 A;  5C1C A;  2NSP A;  4OJP A;  3SY2 A;  4XQF A;  2QZA A;  1NHC A;  2F3L A;  1IB4 A;  3SYJ A;  3NB2 A;  4YDT A;  3WWG A;  2O0V A;  2PYG A;  1WMR A;  2BM7 A;  2NT6 A;  3N6Z A;  4XLC A;  3ZPP A;  1K5C A;  1HF2 A;  3PSS A;  4XOR A;  2X6Y A;  1O8D A;  3RIQ A;  1GQ8 A;  1X0C A;  1QCX A;  2O04 A;  1CZF A;  3LYC A;  1KTW A;  1OGO X;  1TYV A;  4OJL A;  4YCQ A;  1O8M A;  2UVE A;  5DNS A;  5AMV A;  1DBO A;  1OGM X;  2QXZ A;  4YZQ A;  1PXZ A;  4XKV A;  2NST A;  2NTP A;  2BM5 A;  2NTB A;  1EA0 A;  2O17 A;  3PSZ A;  1VBL A;  4OM9 A;  3VMV A;  2O0W A;  1BN8 A;  3N90 A;  5JLV C;  3P4G A;  2XT2 A;  3SUC A;  1L1I A;  4URR A;  2ODL A;  4HWV A;  1O8E A;  3AK5 A;  1TYW A;  2BM4 A;  4YC5 A;  1OOC A;  1QQ1 A;  2O6W A;  4YFO A;  1XG2 A;  3BH6 B;  2XTX A;  4W8Q A;  1KQ5 A;  3JX8 A;  4YEL A;  2IOU G;  2X85 A;  1QRC A;  4NK8 A;  3VSU A;  1OFE A;  2VFP A;  3EQN A;  3UW0 A;  4MXN A;  2O1D A;  2INU A;  3SQV A;  1EZG A;  2B0R A;  2VBE A;  2BX6 A;  2VFM A;  2VJI A;  4OZZ A;  4EW9 A;  1O8F A;  2VJJ A;  2NTQ A;  2VBM A;  1QA3 A;  2V5I A;  4KH3 A;  4OJ5 A;  1EE6 A;  1HG8 A;  1IDJ A;  2PYH A;  3GRH A;  3VST A;  1CLW A;  3FY3 A;  3ZSC A;  1QRB A;  4XLF A;  3GQ8 A;  3LJY A;  1TYU A;  4XNF A;  1O8J A;  4XR6 A;  3DU1 X;  3EQO A;  4MR0 A;  1IA5 A;  3BH7 B;  1OFD A;  4U4B A;  3GQ7 A;  2PEC A;  4XOP A;  1IDK A;  1O8K A;  2VFQ A;  3B8Y A;  3LMW A;  3ML3 A;  1RWR A;  4OJ6 A;  2VFN A;  3GQ9 A;  1PE9 A;  4U49 A;  2INV A;  4W8T A;  4JRA C;  1OFM A;  4YZX A;  4OPW A;  4W8S A;  3PET A;  1LM1 A;  4XKW A;  1LLW A;  3SZE A;  2IQ7 A;  4OJO A;  1OFL A;  1TSP A;  4W8R A;  4XLE A;  1AIR A;  1RU4 A;  3JUR A;  4NK6 A;  2X6X A;  1O8H A;  3H09 A;  2QYU A;  3NAW A;  2VBK A;  1O8L A;  4Z06 A;  4XMY A;  2QX3 A;  3B4N A;  2X3H A;  2XT4 A;  2BM6 A;  3GQA A;  5C1E A;  1LLZ A;  3VMW A;  4YEI A;  2W7Z A;  2UVF A;  4YZA A;  4YZ0 A;  1RMG A; 
#chains in the Genus database with same CATH homology
 1N4I A;  3GQ7 A;  3GQA A;  3SUC A;  1L1I A;  1M8N A;  3GQ8 A;  1EZG A;  3GQ9 A;  1Z2F A;  1L0S A;  1EWW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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