1EZGA

Crystal structure of antifreeze protein from the beetle, tenebrio molitor
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
82
structure length
82
Chain Sequence
QCTGGADCTSCTGACTGCGNCPNAVTCTNSQHCVKANTCTGSTDCNTAQTCTNSKDCFEANTCTDSTNCYKATACTNSSGCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords THERMAL HYSTERESIS PROTEIN ISOFORM YL-1
publication title Mimicry of ice structure by surface hydroxyls and water of a beta-helix antifreeze protein.
pubmed doi rcsb
source organism Tenebrio molitor
molecule tags Antifreeze protein
total genus 38
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02420 AFP Insect antifreeze protein repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.50 Mainly Beta 3 Solenoid Pectate Lyase C-like Insect antifreeze protein 1ezgA00
1L1IA 1EZGA
chains in the Genus database with same CATH superfamily
4Z05A 2QY1A 3LYCA 2IQ7A 2VFPA 2XC1A 3EQNA 2QYUA 2X6YA 3VSVA 3ZSCA 5JMCB 4XKVA 2BM7A 3BH6B 4OZYA 3SZEA 1WMRA 4XLFA 2G0YA 2VFMA 2VFQA 1OFDA 1OOCA 5DNSA 2VBKA 1GQ8A 1OFEA 3SY2A 1O88A 3H09A 3JX8A 1HF2A 4XLCA 2X3HA 4C2LA 2BX6A 2PYHA 1WXRA 2W7ZA 1AIRA 2O17A 1QCXA 2J8KA 2PECA 1DABA 4OJPA 1O8LA 2ODLA 4YELA 1PXZA 2VBEA 1QA1A 1O8EA 3SQVA 1IDKA 2QZAA 4YZAA 1QA2A 3ML3A 2XTXA 4OZZA 4YDTA 1BHEA 2VJJA 5AMVA 1O8GA 1K4ZA 2NT6A 2NSPA 3PSZA 3NAWA 4W8SA 1QRBA 3LJYA 3LMWA 4YFOA 4OJLA 1OFLA 1RU4A 4XNFA 1O8MA 1KQ5A 2O1DA 4Z03A 4W8TA 3JURA 1QQ1A 2X6WA 3SUCA 1QA3A 1TSPA 1IDJA 2X6XA 4V02C 4XR6A 4XOPA 3ZPPA 1IA5A 4AVZA 4OJ6A 4XORA 4XMYA 3EQOA 1DBOA 1KTWA 1RMGA 1O8DA 2PYGA 3RIQA 3T9GA 4YCQA 1LLWA 2NT9A 2VFNA 2XTYA 2Z8GA 4W8QA 1EA0A 2J8IA 2O0VA 1QJVA 3P4GA 1O8FA 2NTBA 4YZXA 4XLAA 1JRGA 2B0RA 3GQ7A 2XT2A 4U4BA 2XT4A 1X0CA 4JRAC 1CZFA 2BM6A 4OJ5A 4XL9A 4YEIA 1TYVA 5JLVC 4NK6A 2F3LA 4W8RA 4KH3A 4XOTA 1IB4A 2XTWA 4MXNA 1EE6A 4OPWA 4XN3A 2NTQA 4I84A 4XLHA 4EW9A 1RWRA 4XQFA 4U49A 3AK5A 2VJIA 3WWGA 4OM9A 1HG8A 1PE9A 3VMVA 2NTPA 3B90A 3B4NA 1TYXA 4XONA 3TH0A 2NZMA 2QX3A 1O8KA 2BM5A 2BM4A 2UVEA 3GQ9A 3NB2A 4YZQA 2O04A 5C1CA 2UVFA 2BSPA 4PMHA 1O8JA 3DU1X 1L1IA 4XKWA 5C1EA 3SYJA 4YEJA 3GRHA 4Z06A 2QXZA 3KRGA 2NSTA 3VMWA 2IOUG 1KCDA 1BN8A 3BH7B 4OJOA 4HWVA 2INVA 1O8IA 1QRCA 1VBLA 2YUHA 2X85A 3N6ZA 1JTAA 4YC5A 3UW0A 3N90A 4MR0A 2VFOA 3GQ8A 3PSSA 1K5CA 1TYUA 3FY3A 1OGMX 1EZGA 4URRA 4YZ0A 1CLWA 1H80A 2EWEA 2INUA 1KCCA 4XLEA 1DBGA 1TYWA 3VSTA 3GQAA 3B8YA 1LLZA 1XG2A 4NK8A 4XN0A 4XM3A 1OGOX 1PLUA 1OFMA 2V5IA 1NHCA 1LM1A 1O8HA 2VBMA 1K8FA 2O6WA 2O0WA 3VSUA 3PETA
chains in the Genus database with same CATH topology
1L1IA 3SUCA 1N4IA 1EZGA 1Z2FA 1L0SA 3GQ9A 1EWWA 3GQ7A 3GQAA 3GQ8A 1M8NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L1I A;  1EZG A; 
#chains in the Genus database with same CATH topology
 4Z05 A;  2QY1 A;  3LYC A;  2IQ7 A;  2VFP A;  2XC1 A;  3EQN A;  2QYU A;  2X6Y A;  3VSV A;  3ZSC A;  5JMC B;  4XKV A;  2BM7 A;  3BH6 B;  4OZY A;  3SZE A;  1WMR A;  4XLF A;  2G0Y A;  2VFM A;  2VFQ A;  1OFD A;  1OOC A;  5DNS A;  2VBK A;  1GQ8 A;  1OFE A;  3SY2 A;  1O88 A;  3H09 A;  3JX8 A;  1HF2 A;  4XLC A;  2X3H A;  4C2L A;  2BX6 A;  2PYH A;  1WXR A;  2W7Z A;  1AIR A;  2O17 A;  1QCX A;  2J8K A;  2PEC A;  1DAB A;  4OJP A;  1O8L A;  2ODL A;  4YEL A;  1PXZ A;  2VBE A;  1QA1 A;  1O8E A;  3SQV A;  1IDK A;  2QZA A;  4YZA A;  1QA2 A;  3ML3 A;  2XTX A;  4OZZ A;  4YDT A;  1BHE A;  2VJJ A;  5AMV A;  1O8G A;  1K4Z A;  2NT6 A;  2NSP A;  3PSZ A;  3NAW A;  4W8S A;  1QRB A;  3LJY A;  3LMW A;  4YFO A;  4OJL A;  1OFL A;  1RU4 A;  4XNF A;  1O8M A;  1KQ5 A;  2O1D A;  4Z03 A;  4W8T A;  3JUR A;  1QQ1 A;  2X6W A;  3SUC A;  1QA3 A;  1TSP A;  1IDJ A;  2X6X A;  4V02 C;  4XR6 A;  4XOP A;  3ZPP A;  1IA5 A;  4AVZ A;  4OJ6 A;  4XOR A;  4XMY A;  3EQO A;  1DBO A;  1KTW A;  1RMG A;  1O8D A;  2PYG A;  3RIQ A;  3T9G A;  4YCQ A;  1LLW A;  2NT9 A;  2VFN A;  2XTY A;  2Z8G A;  4W8Q A;  1EA0 A;  2J8I A;  2O0V A;  1QJV A;  3P4G A;  1O8F A;  2NTB A;  4YZX A;  4XLA A;  1JRG A;  2B0R A;  3GQ7 A;  2XT2 A;  4U4B A;  2XT4 A;  1X0C A;  4JRA C;  1CZF A;  2BM6 A;  4OJ5 A;  4XL9 A;  4YEI A;  1TYV A;  5JLV C;  4NK6 A;  2F3L A;  4W8R A;  4KH3 A;  4XOT A;  1IB4 A;  2XTW A;  4MXN A;  1EE6 A;  4OPW A;  4XN3 A;  2NTQ A;  4I84 A;  4XLH A;  4EW9 A;  1RWR A;  4XQF A;  4U49 A;  3AK5 A;  2VJI A;  3WWG A;  4OM9 A;  1HG8 A;  1PE9 A;  3VMV A;  2NTP A;  3B90 A;  3B4N A;  1TYX A;  4XON A;  3TH0 A;  2NZM A;  2QX3 A;  1O8K A;  2BM5 A;  2BM4 A;  2UVE A;  3GQ9 A;  3NB2 A;  4YZQ A;  2O04 A;  5C1C A;  2UVF A;  2BSP A;  4PMH A;  1O8J A;  3DU1 X;  1L1I A;  4XKW A;  5C1E A;  3SYJ A;  4YEJ A;  3GRH A;  4Z06 A;  2QXZ A;  3KRG A;  2NST A;  3VMW A;  2IOU G;  1KCD A;  1BN8 A;  3BH7 B;  4OJO A;  4HWV A;  2INV A;  1O8I A;  1QRC A;  1VBL A;  2YUH A;  2X85 A;  3N6Z A;  1JTA A;  4YC5 A;  3UW0 A;  3N90 A;  4MR0 A;  2VFO A;  3GQ8 A;  3PSS A;  1K5C A;  1TYU A;  3FY3 A;  1OGM X;  1EZG A;  4URR A;  4YZ0 A;  1CLW A;  1H80 A;  2EWE A;  2INU A;  1KCC A;  4XLE A;  1DBG A;  1TYW A;  3VST A;  3GQA A;  3B8Y A;  1LLZ A;  1XG2 A;  4NK8 A;  4XN0 A;  4XM3 A;  1OGO X;  1PLU A;  1OFM A;  2V5I A;  1NHC A;  1LM1 A;  1O8H A;  2VBM A;  1K8F A;  2O6W A;  2O0W A;  3VSU A;  3PET A; 
#chains in the Genus database with same CATH homology
 1L1I A;  3SUC A;  1N4I A;  1EZG A;  1Z2F A;  1L0S A;  3GQ9 A;  1EWW A;  3GQ7 A;  3GQA A;  3GQ8 A;  1M8N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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