1EZGA

Crystal structure of antifreeze protein from the beetle, tenebrio molitor
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
82
structure length
82
Chain Sequence
QCTGGADCTSCTGACTGCGNCPNAVTCTNSQHCVKANTCTGSTDCNTAQTCTNSKDCFEANTCTDSTNCYKATACTNSSGCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mimicry of ice structure by surface hydroxyls and water of a beta-helix antifreeze protein.
pubmed doi rcsb
source organism Tenebrio molitor
molecule tags Antifreeze protein
molecule keywords THERMAL HYSTERESIS PROTEIN ISOFORM YL-1
total genus 38
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02420 AFP Insect antifreeze protein repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.50 Mainly Beta 3 Solenoid Pectate Lyase C-like Insect antifreeze protein 1ezgA00
1L1IA 1EZGA
chains in the Genus database with same CATH superfamily
2J8KA 2O0VA 1OGMX 3BH6B 3VSUA 3LMWA 1K5CA 4MXNA 1K4ZA 1RMGA 3P4GA 4URRA 4XQFA 3UW0A 3FY3A 4OPWA 2YUHA 2O17A 1JTAA 4OZZA 1EA0A 3PSSA 2EWEA 2O6WA 2VFQA 3T9GA 4NK8A 1TYUA 2O04A 4YC5A 2VBEA 2QXZA 1PXZA 1QCXA 2X6XA 1H80A 3SY2A 5C1EA 2VFOA 4OM9A 4XORA 3VMVA 2BX6A 2XTYA 4I84A 3VSVA 4OJLA 2QX3A 3LYCA 4W8QA 2VBKA 4Z06A 3RIQA 2QYUA 2XTWA 1QQ1A 4U49A 4XLCA 4YZXA 2XT2A 1O8HA 3N6ZA 4OJ6A 4YFOA 4XM3A 3N90A 2BSPA 4XOTA 4YZ0A 2VFPA 1OOCA 2B0RA 3B4NA 3WWGA 1IDJA 2O0WA 4XMYA 1BN8A 1CLWA 2XTXA 2G0YA 2X6WA 2INVA 2X3HA 2QZAA 3LJYA 1QA1A 1GQ8A 1KCDA 2VFNA 3GQ7A 4HWVA 4JRAC 4YEIA 2W7ZA 2BM7A 4W8SA 3PSZA 1OGOX 2PYGA 2NZMA 3GQAA 4Z05A 4KH3A 4AVZA 2BM6A 3ZPPA 2IOUG 2J8IA 4XLAA 3SYJA 4C2LA 1DBOA 2VBMA 1EZGA 2ODLA 1O8KA 4YEJA 4XNFA 2X85A 3ML3A 1AIRA 4XR6A 1WXRA 1NHCA 1O8LA 4W8RA 1O8FA 4XONA 1QRCA 3VSTA 1O8MA 2NT6A 3GQ9A 1OFEA 1BHEA 1QA2A 4V02C 2VJIA 1DABA 2PYHA 1IB4A 1O8IA 2X6YA 1OFLA 1O8EA 3SZEA 2INUA 2NT9A 4XLEA 3SQVA 3GRHA 1CZFA 2IQ7A 4U4BA 1TYWA 1X0CA 2UVEA 1OFDA 2NSPA 4YCQA 4YELA 1QA3A 2NTQA 4OJPA 1O88A 1RWRA 2NSTA 3VMWA 4NK6A 2XC1A 2O1DA 4XN3A 1VBLA 3ZSCA 1PE9A 5DNSA 4OZYA 3TH0A 3BH7B 1XG2A 1K8FA 1QJVA 1LLZA 3B8YA 4YDTA 4YZQA 3SUCA 3PETA 4XKVA 4XKWA 1O8DA 4XOPA 1O8GA 4OJOA 1OFMA 1WMRA 3H09A 1JRGA 1TYVA 3EQNA 1HG8A 4XLHA 1IA5A 4EW9A 3JURA 2BM4A 1PLUA 1EE6A 3JX8A 2F3LA 1QRBA 4OJ5A 1KQ5A 1TSPA 5C1CA 5AMVA 3AK5A 4YZAA 1L1IA 3B90A 2UVFA 4Z03A 2NTBA 1KTWA 2XT4A 4XL9A 1DBGA 2BM5A 4MR0A 2Z8GA 1KCCA 3KRGA 1TYXA 4W8TA 2VJJA 3DU1X 4PMHA 2PECA 1HF2A 1IDKA 1O8JA 3GQ8A 3EQOA 1RU4A 2V5IA 3NAWA 4XN0A 5JLVC 1LLWA 5JMCB 2NTPA 1LM1A 2QY1A 3NB2A 2VFMA 4XLFA
chains in the Genus database with same CATH topology
1M8NA 1L1IA 1N4IA 3GQ8A 1EZGA 3GQAA 3GQ9A 1Z2FA 3SUCA 3GQ7A 1EWWA 1L0SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L1I A;  1EZG A; 
#chains in the Genus database with same CATH topology
 2J8K A;  2O0V A;  1OGM X;  3BH6 B;  3VSU A;  3LMW A;  1K5C A;  4MXN A;  1K4Z A;  1RMG A;  3P4G A;  4URR A;  4XQF A;  3UW0 A;  3FY3 A;  4OPW A;  2YUH A;  2O17 A;  1JTA A;  4OZZ A;  1EA0 A;  3PSS A;  2EWE A;  2O6W A;  2VFQ A;  3T9G A;  4NK8 A;  1TYU A;  2O04 A;  4YC5 A;  2VBE A;  2QXZ A;  1PXZ A;  1QCX A;  2X6X A;  1H80 A;  3SY2 A;  5C1E A;  2VFO A;  4OM9 A;  4XOR A;  3VMV A;  2BX6 A;  2XTY A;  4I84 A;  3VSV A;  4OJL A;  2QX3 A;  3LYC A;  4W8Q A;  2VBK A;  4Z06 A;  3RIQ A;  2QYU A;  2XTW A;  1QQ1 A;  4U49 A;  4XLC A;  4YZX A;  2XT2 A;  1O8H A;  3N6Z A;  4OJ6 A;  4YFO A;  4XM3 A;  3N90 A;  2BSP A;  4XOT A;  4YZ0 A;  2VFP A;  1OOC A;  2B0R A;  3B4N A;  3WWG A;  1IDJ A;  2O0W A;  4XMY A;  1BN8 A;  1CLW A;  2XTX A;  2G0Y A;  2X6W A;  2INV A;  2X3H A;  2QZA A;  3LJY A;  1QA1 A;  1GQ8 A;  1KCD A;  2VFN A;  3GQ7 A;  4HWV A;  4JRA C;  4YEI A;  2W7Z A;  2BM7 A;  4W8S A;  3PSZ A;  1OGO X;  2PYG A;  2NZM A;  3GQA A;  4Z05 A;  4KH3 A;  4AVZ A;  2BM6 A;  3ZPP A;  2IOU G;  2J8I A;  4XLA A;  3SYJ A;  4C2L A;  1DBO A;  2VBM A;  1EZG A;  2ODL A;  1O8K A;  4YEJ A;  4XNF A;  2X85 A;  3ML3 A;  1AIR A;  4XR6 A;  1WXR A;  1NHC A;  1O8L A;  4W8R A;  1O8F A;  4XON A;  1QRC A;  3VST A;  1O8M A;  2NT6 A;  3GQ9 A;  1OFE A;  1BHE A;  1QA2 A;  4V02 C;  2VJI A;  1DAB A;  2PYH A;  1IB4 A;  1O8I A;  2X6Y A;  1OFL A;  1O8E A;  3SZE A;  2INU A;  2NT9 A;  4XLE A;  3SQV A;  3GRH A;  1CZF A;  2IQ7 A;  4U4B A;  1TYW A;  1X0C A;  2UVE A;  1OFD A;  2NSP A;  4YCQ A;  4YEL A;  1QA3 A;  2NTQ A;  4OJP A;  1O88 A;  1RWR A;  2NST A;  3VMW A;  4NK6 A;  2XC1 A;  2O1D A;  4XN3 A;  1VBL A;  3ZSC A;  1PE9 A;  5DNS A;  4OZY A;  3TH0 A;  3BH7 B;  1XG2 A;  1K8F A;  1QJV A;  1LLZ A;  3B8Y A;  4YDT A;  4YZQ A;  3SUC A;  3PET A;  4XKV A;  4XKW A;  1O8D A;  4XOP A;  1O8G A;  4OJO A;  1OFM A;  1WMR A;  3H09 A;  1JRG A;  1TYV A;  3EQN A;  1HG8 A;  4XLH A;  1IA5 A;  4EW9 A;  3JUR A;  2BM4 A;  1PLU A;  1EE6 A;  3JX8 A;  2F3L A;  1QRB A;  4OJ5 A;  1KQ5 A;  1TSP A;  5C1C A;  5AMV A;  3AK5 A;  4YZA A;  1L1I A;  3B90 A;  2UVF A;  4Z03 A;  2NTB A;  1KTW A;  2XT4 A;  4XL9 A;  1DBG A;  2BM5 A;  4MR0 A;  2Z8G A;  1KCC A;  3KRG A;  1TYX A;  4W8T A;  2VJJ A;  3DU1 X;  4PMH A;  2PEC A;  1HF2 A;  1IDK A;  1O8J A;  3GQ8 A;  3EQO A;  1RU4 A;  2V5I A;  3NAW A;  4XN0 A;  5JLV C;  1LLW A;  5JMC B;  2NTP A;  1LM1 A;  2QY1 A;  3NB2 A;  2VFM A;  4XLF A; 
#chains in the Genus database with same CATH homology
 1M8N A;  1L1I A;  1N4I A;  3GQ8 A;  1EZG A;  3GQA A;  3GQ9 A;  1Z2F A;  3SUC A;  3GQ7 A;  1EWW A;  1L0S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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