1TSPA

Crystal structure of p22 tailspike protein: interdigitated subunits in a thermostable trimer
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
544
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE-PROTEIN
publication title Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer.
pubmed rcsb
molecule tags Late protein
total genus 185
structure length 544
sequence length 554
ec nomenclature
pdb deposition date 1994-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tspA00
3AK5A 2VFPA 4KH3A 1QA3A 3SZEA 3H09A 2VFQA 4OM9A 2VFOA 2VFMA 2V5IA 2XC1A 2VFNA 1QRBA 1TYVA 1TYWA 3SYJA 1TYXA 3RIQA 1QRCA 1TSPA 3TH0A 1QA2A 2IOUG 1CLWA 1WXRA 3ML3A 1QQ1A 1TYUA 1QA1A 1DABA
chains in the Genus database with same CATH superfamily
3PSZA 1LM1A 4NK6A 2ODLA 4XN3A 4W8TA 1EA0A 1KQ5A 3EQOA 4XKWA 4JRAC 3UW0A 3H09A 1IB4A 2F3LA 2VFQA 4XMYA 1EE6A 1XG2A 2O0VA 2VFOA 2BSPA 2PYGA 2G0YA 2X85A 2NSTA 4XM3A 3VSVA 2B0RA 2INVA 1O8LA 1O8KA 5DNSA 1TYWA 4U4BA 1OFMA 3SYJA 4XQFA 1JRGA 4W8RA 2O04A 3N90A 4OJLA 2PECA 2NTBA 2BM7A 4URRA 2XTWA 4XOPA 3FY3A 4EW9A 4I84A 2X6WA 3GRHA 1LLZA 1WXRA 1GQ8A 3ML3A 4XLFA 3ZSCA 1AIRA 2VBMA 3EQNA 1CZFA 3AK5A 2XTXA 2YUHA 3VMWA 1O8JA 3T9GA 2VFPA 2O1DA 2X6XA 3P4GA 4XONA 4PMHA 3SZEA 2EWEA 4XNFA 2NZMA 2NT9A 4Z05A 3GQ7A 2VFMA 5JLVC 4YZ0A 1OFDA 2W7ZA 1BN8A 2VFNA 4XORA 1RMGA 3JURA 3NB2A 4C2LA 1K5CA 2Z8GA 1TYXA 1QRCA 3BH6B 2O17A 4XLEA 1QA1A 4YFOA 4YZAA 1PXZA 2NTQA 3B8YA 1OOCA 4W8SA 1LLWA 2O0WA 2IOUG 4YDTA 4OJ5A 4YC5A 4YCQA 3SUCA 4HWVA 1DBOA 5JMCB 4Z06A 3VSTA 1H80A 3B90A 1KCCA 1O8FA 2O6WA 2X6YA 3VSUA 1O8GA 4YELA 5C1CA 1HF2A 4MXNA 1WMRA 1IDKA 2NT6A 1PE9A 4YZXA 2VBKA 2BM6A 4OM9A 1IDJA 4OJPA 4Z03A 2INUA 3BH7B 5AMVA 2V5IA 1RWRA 1K8FA 4NK8A 4XR6A 2NTPA 4XL9A 2QX3A 3KRGA 1QRBA 1TYVA 4XKVA 1OGMX 4XN0A 4OJOA 1OGOX 1KTWA 3GQAA 2PYHA 2J8KA 3VMVA 1VBLA 4YZQA 2UVFA 4AVZA 1O8MA 3ZPPA 1DBGA 1KCDA 3LJYA 2IQ7A 3WWGA 2VJIA 2X3HA 1K4ZA 1QQ1A 4OZYA 4XOTA 4XLHA 2XT2A 1HG8A 4YEJA 1O8EA 3B4NA 4MR0A 4OJ6A 2NSPA 1NHCA 4XLCA 3LMWA 2VJJA 4KH3A 3SY2A 1QA3A 1O8IA 4OPWA 2J8IA 2VBEA 3JX8A 1JTAA 2XTYA 3GQ8A 1BHEA 2BM4A 4XLAA 3GQ9A 3PETA 4V02C 1O88A 3DU1X 2XC1A 3LYCA 2QXZA 1QJVA 1QCXA 2BX6A 2UVEA 3SQVA 4U49A 4YEIA 3RIQA 4OZZA 1TSPA 3NAWA 2QY1A 2QZAA 1RU4A 1PLUA 3TH0A 2XT4A 4W8QA 3PSSA 1QA2A 5C1EA 1OFEA 1IA5A 1CLWA 1O8DA 1O8HA 1OFLA 1TYUA 3N6ZA 2QYUA 1X0CA 1L1IA 1EZGA 1DABA 2BM5A
chains in the Genus database with same CATH topology
3AK5A 4OJ6A 2YUHA 1HF2A 2VFPA 4KH3A 1KQ5A 1QA3A 3P4GA 4OPWA 3SZEA 2J8IA 4JRAC 3JX8A 3H09A 2BM6A 2F3LA 2BM4A 2VFQA 4OM9A 3PETA 4OJPA 4V02C 2VFOA 2VFMA 2G0YA 5JLVC 3BH7B 2V5IA 2XC1A 1K8FA 2W7ZA 2B0RA 3LYCA 2VFNA 1QRBA 1TYVA 1TYWA 2BX6A 3SYJA 1TYXA 4OJOA 1QRCA 3RIQA 1TSPA 3BH6B 4OJLA 3N90A 3TH0A 2BM7A 1QA2A 3LJYA 2IOUG 1CLWA 4OJ5A 1WXRA 3ML3A 1K4ZA 1QQ1A 1TYUA 3N6ZA 5JMCB 1QA1A 1DABA 2BM5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AK5 A;  2VFP A;  4KH3 A;  1QA3 A;  3SZE A;  3H09 A;  2VFQ A;  4OM9 A;  2VFO A;  2VFM A;  2V5I A;  2XC1 A;  2VFN A;  1QRB A;  1TYV A;  1TYW A;  3SYJ A;  1TYX A;  3RIQ A;  1QRC A;  1TSP A;  3TH0 A;  1QA2 A;  2IOU G;  1CLW A;  1WXR A;  3ML3 A;  1QQ1 A;  1TYU A;  1QA1 A;  1DAB A; 
#chains in the Genus database with same CATH topology
 3PSZ A;  1LM1 A;  4NK6 A;  2ODL A;  4XN3 A;  4W8T A;  1EA0 A;  1KQ5 A;  3EQO A;  4XKW A;  4JRA C;  3UW0 A;  3H09 A;  1IB4 A;  2F3L A;  2VFQ A;  4XMY A;  1EE6 A;  1XG2 A;  2O0V A;  2VFO A;  2BSP A;  2PYG A;  2G0Y A;  2X85 A;  2NST A;  4XM3 A;  3VSV A;  2B0R A;  2INV A;  1O8L A;  1O8K A;  5DNS A;  1TYW A;  4U4B A;  1OFM A;  3SYJ A;  4XQF A;  1JRG A;  4W8R A;  2O04 A;  3N90 A;  4OJL A;  2PEC A;  2NTB A;  2BM7 A;  4URR A;  2XTW A;  4XOP A;  3FY3 A;  4EW9 A;  4I84 A;  2X6W A;  3GRH A;  1LLZ A;  1WXR A;  1GQ8 A;  3ML3 A;  4XLF A;  3ZSC A;  1AIR A;  2VBM A;  3EQN A;  1CZF A;  3AK5 A;  2XTX A;  2YUH A;  3VMW A;  1O8J A;  3T9G A;  2VFP A;  2O1D A;  2X6X A;  3P4G A;  4XON A;  4PMH A;  3SZE A;  2EWE A;  4XNF A;  2NZM A;  2NT9 A;  4Z05 A;  3GQ7 A;  2VFM A;  5JLV C;  4YZ0 A;  1OFD A;  2W7Z A;  1BN8 A;  2VFN A;  4XOR A;  1RMG A;  3JUR A;  3NB2 A;  4C2L A;  1K5C A;  2Z8G A;  1TYX A;  1QRC A;  3BH6 B;  2O17 A;  4XLE A;  1QA1 A;  4YFO A;  4YZA A;  1PXZ A;  2NTQ A;  3B8Y A;  1OOC A;  4W8S A;  1LLW A;  2O0W A;  2IOU G;  4YDT A;  4OJ5 A;  4YC5 A;  4YCQ A;  3SUC A;  4HWV A;  1DBO A;  5JMC B;  4Z06 A;  3VST A;  1H80 A;  3B90 A;  1KCC A;  1O8F A;  2O6W A;  2X6Y A;  3VSU A;  1O8G A;  4YEL A;  5C1C A;  1HF2 A;  4MXN A;  1WMR A;  1IDK A;  2NT6 A;  1PE9 A;  4YZX A;  2VBK A;  2BM6 A;  4OM9 A;  1IDJ A;  4OJP A;  4Z03 A;  2INU A;  3BH7 B;  5AMV A;  2V5I A;  1RWR A;  1K8F A;  4NK8 A;  4XR6 A;  2NTP A;  4XL9 A;  2QX3 A;  3KRG A;  1QRB A;  1TYV A;  4XKV A;  1OGM X;  4XN0 A;  4OJO A;  1OGO X;  1KTW A;  3GQA A;  2PYH A;  2J8K A;  3VMV A;  1VBL A;  4YZQ A;  2UVF A;  4AVZ A;  1O8M A;  3ZPP A;  1DBG A;  1KCD A;  3LJY A;  2IQ7 A;  3WWG A;  2VJI A;  2X3H A;  1K4Z A;  1QQ1 A;  4OZY A;  4XOT A;  4XLH A;  2XT2 A;  1HG8 A;  4YEJ A;  1O8E A;  3B4N A;  4MR0 A;  4OJ6 A;  2NSP A;  1NHC A;  4XLC A;  3LMW A;  2VJJ A;  4KH3 A;  3SY2 A;  1QA3 A;  1O8I A;  4OPW A;  2J8I A;  2VBE A;  3JX8 A;  1JTA A;  2XTY A;  3GQ8 A;  1BHE A;  2BM4 A;  4XLA A;  3GQ9 A;  3PET A;  4V02 C;  1O88 A;  3DU1 X;  2XC1 A;  3LYC A;  2QXZ A;  1QJV A;  1QCX A;  2BX6 A;  2UVE A;  3SQV A;  4U49 A;  4YEI A;  3RIQ A;  4OZZ A;  1TSP A;  3NAW A;  2QY1 A;  2QZA A;  1RU4 A;  1PLU A;  3TH0 A;  2XT4 A;  4W8Q A;  3PSS A;  1QA2 A;  5C1E A;  1OFE A;  1IA5 A;  1CLW A;  1O8D A;  1O8H A;  1OFL A;  1TYU A;  3N6Z A;  2QYU A;  1X0C A;  1L1I A;  1EZG A;  1DAB A;  2BM5 A; 
#chains in the Genus database with same CATH homology
 3AK5 A;  4OJ6 A;  2YUH A;  1HF2 A;  2VFP A;  4KH3 A;  1KQ5 A;  1QA3 A;  3P4G A;  4OPW A;  3SZE A;  2J8I A;  4JRA C;  3JX8 A;  3H09 A;  2BM6 A;  2F3L A;  2BM4 A;  2VFQ A;  4OM9 A;  3PET A;  4OJP A;  4V02 C;  2VFO A;  2VFM A;  2G0Y A;  5JLV C;  3BH7 B;  2V5I A;  2XC1 A;  1K8F A;  2W7Z A;  2B0R A;  3LYC A;  2VFN A;  1QRB A;  1TYV A;  1TYW A;  2BX6 A;  3SYJ A;  1TYX A;  4OJO A;  1QRC A;  3RIQ A;  1TSP A;  3BH6 B;  4OJL A;  3N90 A;  3TH0 A;  2BM7 A;  1QA2 A;  3LJY A;  2IOU G;  1CLW A;  4OJ5 A;  1WXR A;  3ML3 A;  1K4Z A;  1QQ1 A;  1TYU A;  3N6Z A;  5JMC B;  1QA1 A;  1DAB A;  2BM5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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