1TSPA

Crystal structure of p22 tailspike protein: interdigitated subunits in a thermostable trimer
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
544
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer.
pubmed rcsb
molecule tags Late protein
molecule keywords TAILSPIKE-PROTEIN
total genus 185
structure length 544
sequence length 554
ec nomenclature
pdb deposition date 1994-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tspA00
1CLWA 3RIQA 3H09A 2XC1A 1TYUA 3SYJA 2V5IA 1TYWA 2VFQA 1QQ1A 3ML3A 1QA1A 2VFPA 2VFNA 2IOUG 3AK5A 1QRCA 2VFMA 1TYVA 3TH0A 1QRBA 1WXRA 1TYXA 3SZEA 1TSPA 1QA3A 1QA2A 4KH3A 4OM9A 1DABA 2VFOA
chains in the Genus database with same CATH superfamily
1XG2A 3RIQA 2XTYA 3N90A 3H09A 2XC1A 4I84A 3LYCA 3T9GA 3LJYA 1TYUA 3SYJA 3BH6B 2QY1A 1IDKA 1TYWA 2J8KA 2VFQA 4XN3A 4XORA 4MXNA 1LLZA 2QZAA 1RMGA 2VFNA 3AK5A 2BSPA 4YDTA 3JURA 3TH0A 2X3HA 2X6YA 2UVEA 4URRA 2XT4A 1O8DA 4YZXA 4Z05A 5JMCB 2INUA 2O6WA 1K5CA 2BX6A 2EWEA 3LMWA 1JRGA 2B0RA 4YC5A 1KTWA 1DBGA 1OFEA 2XTXA 4NK6A 4XLAA 4KH3A 4OM9A 1QJVA 4YZ0A 1DABA 1CLWA 3SY2A 5C1CA 4OJ5A 1NHCA 1CZFA 1HG8A 4U49A 5AMVA 1HF2A 4YEJA 4Z06A 2VBEA 2NSTA 4HWVA 3ZPPA 3B8YA 2VJIA 3PETA 1QQ1A 2XT2A 1IDJA 3VSTA 2VJJA 2VFPA 1BN8A 1BHEA 4AVZA 2IQ7A 3B4NA 2UVFA 2G0YA 2NTQA 5C1EA 4XLEA 2BM6A 1EZGA 1DBOA 1TYVA 4OPWA 2PYGA 2F3LA 2NT9A 1GQ8A 2O17A 1VBLA 1OFLA 2BM4A 2YUHA 3UW0A 4C2LA 2O0VA 1O8LA 2BM7A 4YCQA 3NAWA 3VMVA 1TYXA 3B90A 4YZQA 3SUCA 3WWGA 4XKVA 1QA3A 3BH7B 3GRHA 1O8KA 4W8QA 4YELA 2W7ZA 4V02C 2O04A 2VFOA 1RU4A 2XTWA 4YFOA 2X85A 1K4ZA 1OFMA 4PMHA 4YZAA 2Z8GA 2VBMA 2NSPA 2QYUA 3GQ9A 4XL9A 4Z03A 3VMWA 3PSSA 1O8HA 3P4GA 1PE9A 1OGOX 4OJLA 4W8TA 1O8IA 1PLUA 2QX3A 3ML3A 4XKWA 2IOUG 4XQFA 1JTAA 1O8GA 1QRCA 2QXZA 2VBKA 1O8MA 2X6XA 1KCCA 2NZMA 2X6WA 1KQ5A 4XLHA 1WXRA 1O8FA 1LLWA 1IA5A 4U4BA 3NB2A 3GQAA 1EE6A 2PECA 3PSZA 3EQOA 4XOPA 2BM5A 1O8JA 1QA2A 2NTBA 3GQ7A 1L1IA 4OJPA 3SQVA 3VSVA 1WMRA 1KCDA 3DU1X 3JX8A 4W8RA 4EW9A 3GQ8A 4OJOA 1H80A 4XN0A 2PYHA 1OOCA 1PXZA 4OZZA 4OZYA 2V5IA 4JRAC 1O88A 1K8FA 1QA1A 4XONA 4XMYA 4W8SA 4XOTA 3N6ZA 1X0CA 3FY3A 4XLFA 4XNFA 4OJ6A 1AIRA 2NTPA 4XR6A 2VFMA 2O1DA 1OGMX 1RWRA 2NT6A 2ODLA 4NK8A 5JLVC 1IB4A 2J8IA 3KRGA 3EQNA 1OFDA 3ZSCA 5DNSA 2INVA 1QCXA 1O8EA 4YEIA 2O0WA 3VSUA 1EA0A 1LM1A 3SZEA 1TSPA 4MR0A 1QRBA 4XLCA 4XM3A
chains in the Genus database with same CATH topology
1CLWA 1K4ZA 4OJ5A 3RIQA 3N90A 3H09A 3JX8A 2XC1A 3LYCA 4OJOA 1HF2A 3LJYA 1TYUA 3SYJA 2V5IA 3BH6B 2W7ZA 3P4GA 1TYWA 4JRAC 2VFQA 4OJLA 4OM9A 1K8FA 1QQ1A 3PETA 3ML3A 1QA1A 2VFPA 2IOUG 2VFNA 3N6ZA 3AK5A 2G0YA 4OJ6A 1QRCA 2BM6A 2VFMA 1TYVA 4OPWA 3TH0A 5JLVC 2F3LA 1KQ5A 2J8IA 5JMCB 2BM4A 2YUHA 4OJPA 2BX6A 1WXRA 2BM7A 1TYXA 3SZEA 2B0RA 4V02C 1TSPA 2BM5A 1QA3A 3BH7B 1QA2A 4KH3A 1QRBA 1DABA 2VFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CLW A;  3RIQ A;  3H09 A;  2XC1 A;  1TYU A;  3SYJ A;  2V5I A;  1TYW A;  2VFQ A;  1QQ1 A;  3ML3 A;  1QA1 A;  2VFP A;  2VFN A;  2IOU G;  3AK5 A;  1QRC A;  2VFM A;  1TYV A;  3TH0 A;  1QRB A;  1WXR A;  1TYX A;  3SZE A;  1TSP A;  1QA3 A;  1QA2 A;  4KH3 A;  4OM9 A;  1DAB A;  2VFO A; 
#chains in the Genus database with same CATH topology
 1XG2 A;  3RIQ A;  2XTY A;  3N90 A;  3H09 A;  2XC1 A;  4I84 A;  3LYC A;  3T9G A;  3LJY A;  1TYU A;  3SYJ A;  3BH6 B;  2QY1 A;  1IDK A;  1TYW A;  2J8K A;  2VFQ A;  4XN3 A;  4XOR A;  4MXN A;  1LLZ A;  2QZA A;  1RMG A;  2VFN A;  3AK5 A;  2BSP A;  4YDT A;  3JUR A;  3TH0 A;  2X3H A;  2X6Y A;  2UVE A;  4URR A;  2XT4 A;  1O8D A;  4YZX A;  4Z05 A;  5JMC B;  2INU A;  2O6W A;  1K5C A;  2BX6 A;  2EWE A;  3LMW A;  1JRG A;  2B0R A;  4YC5 A;  1KTW A;  1DBG A;  1OFE A;  2XTX A;  4NK6 A;  4XLA A;  4KH3 A;  4OM9 A;  1QJV A;  4YZ0 A;  1DAB A;  1CLW A;  3SY2 A;  5C1C A;  4OJ5 A;  1NHC A;  1CZF A;  1HG8 A;  4U49 A;  5AMV A;  1HF2 A;  4YEJ A;  4Z06 A;  2VBE A;  2NST A;  4HWV A;  3ZPP A;  3B8Y A;  2VJI A;  3PET A;  1QQ1 A;  2XT2 A;  1IDJ A;  3VST A;  2VJJ A;  2VFP A;  1BN8 A;  1BHE A;  4AVZ A;  2IQ7 A;  3B4N A;  2UVF A;  2G0Y A;  2NTQ A;  5C1E A;  4XLE A;  2BM6 A;  1EZG A;  1DBO A;  1TYV A;  4OPW A;  2PYG A;  2F3L A;  2NT9 A;  1GQ8 A;  2O17 A;  1VBL A;  1OFL A;  2BM4 A;  2YUH A;  3UW0 A;  4C2L A;  2O0V A;  1O8L A;  2BM7 A;  4YCQ A;  3NAW A;  3VMV A;  1TYX A;  3B90 A;  4YZQ A;  3SUC A;  3WWG A;  4XKV A;  1QA3 A;  3BH7 B;  3GRH A;  1O8K A;  4W8Q A;  4YEL A;  2W7Z A;  4V02 C;  2O04 A;  2VFO A;  1RU4 A;  2XTW A;  4YFO A;  2X85 A;  1K4Z A;  1OFM A;  4PMH A;  4YZA A;  2Z8G A;  2VBM A;  2NSP A;  2QYU A;  3GQ9 A;  4XL9 A;  4Z03 A;  3VMW A;  3PSS A;  1O8H A;  3P4G A;  1PE9 A;  1OGO X;  4OJL A;  4W8T A;  1O8I A;  1PLU A;  2QX3 A;  3ML3 A;  4XKW A;  2IOU G;  4XQF A;  1JTA A;  1O8G A;  1QRC A;  2QXZ A;  2VBK A;  1O8M A;  2X6X A;  1KCC A;  2NZM A;  2X6W A;  1KQ5 A;  4XLH A;  1WXR A;  1O8F A;  1LLW A;  1IA5 A;  4U4B A;  3NB2 A;  3GQA A;  1EE6 A;  2PEC A;  3PSZ A;  3EQO A;  4XOP A;  2BM5 A;  1O8J A;  1QA2 A;  2NTB A;  3GQ7 A;  1L1I A;  4OJP A;  3SQV A;  3VSV A;  1WMR A;  1KCD A;  3DU1 X;  3JX8 A;  4W8R A;  4EW9 A;  3GQ8 A;  4OJO A;  1H80 A;  4XN0 A;  2PYH A;  1OOC A;  1PXZ A;  4OZZ A;  4OZY A;  2V5I A;  4JRA C;  1O88 A;  1K8F A;  1QA1 A;  4XON A;  4XMY A;  4W8S A;  4XOT A;  3N6Z A;  1X0C A;  3FY3 A;  4XLF A;  4XNF A;  4OJ6 A;  1AIR A;  2NTP A;  4XR6 A;  2VFM A;  2O1D A;  1OGM X;  1RWR A;  2NT6 A;  2ODL A;  4NK8 A;  5JLV C;  1IB4 A;  2J8I A;  3KRG A;  3EQN A;  1OFD A;  3ZSC A;  5DNS A;  2INV A;  1QCX A;  1O8E A;  4YEI A;  2O0W A;  3VSU A;  1EA0 A;  1LM1 A;  3SZE A;  1TSP A;  4MR0 A;  1QRB A;  4XLC A;  4XM3 A; 
#chains in the Genus database with same CATH homology
 1CLW A;  1K4Z A;  4OJ5 A;  3RIQ A;  3N90 A;  3H09 A;  3JX8 A;  2XC1 A;  3LYC A;  4OJO A;  1HF2 A;  3LJY A;  1TYU A;  3SYJ A;  2V5I A;  3BH6 B;  2W7Z A;  3P4G A;  1TYW A;  4JRA C;  2VFQ A;  4OJL A;  4OM9 A;  1K8F A;  1QQ1 A;  3PET A;  3ML3 A;  1QA1 A;  2VFP A;  2IOU G;  2VFN A;  3N6Z A;  3AK5 A;  2G0Y A;  4OJ6 A;  1QRC A;  2BM6 A;  2VFM A;  1TYV A;  4OPW A;  3TH0 A;  5JLV C;  2F3L A;  1KQ5 A;  2J8I A;  5JMC B;  2BM4 A;  2YUH A;  4OJP A;  2BX6 A;  1WXR A;  2BM7 A;  1TYX A;  3SZE A;  2B0R A;  4V02 C;  1TSP A;  2BM5 A;  1QA3 A;  3BH7 B;  1QA2 A;  4KH3 A;  1QRB A;  1DAB A;  2VFO A; 
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similar chains in the Genus database (?% sequence similarity)
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