1TSPA

Crystal structure of p22 tailspike protein: interdigitated subunits in a thermostable trimer
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
544
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE-PROTEIN
publication title Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer.
pubmed rcsb
molecule tags Late protein
total genus 185
structure length 544
sequence length 554
ec nomenclature
pdb deposition date 1994-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tspA00
2VFNA 1QA3A 4KH3A 3SZEA 3RIQA 1TYXA 2VFOA 4OM9A 1TYUA 3ML3A 2IOUG 1TYVA 1QQ1A 3SYJA 1DABA 2XC1A 1CLWA 1QRCA 2VFMA 3TH0A 1QA1A 1QRBA 1WXRA 2V5IA 1TYWA 2VFPA 3AK5A 1TSPA 3H09A 1QA2A 2VFQA
chains in the Genus database with same CATH superfamily
1QA3A 2NTBA 4XOTA 5JMCB 4YEIA 2QYUA 4YELA 1VBLA 3KRGA 1LLWA 2NZMA 3GRHA 3NAWA 2QXZA 1TYUA 2J8KA 3ML3A 3UW0A 2IOUG 1TYVA 3BH7B 1KQ5A 2B0RA 2X3HA 4YFOA 3PSSA 1OFMA 1OGOX 2NTPA 4MR0A 2BM5A 3TH0A 2BM4A 2UVEA 1JTAA 3N90A 2VBEA 2V5IA 4PMHA 1EE6A 1OFEA 4W8QA 3FY3A 3PETA 4OJOA 2NSPA 3JURA 1O8LA 3T9GA 4XQFA 2UVFA 2PYHA 2XT2A 1LLZA 3GQAA 3VSVA 5JLVC 4XNFA 1OFDA 1O8HA 3BH6B 2XTXA 4I84A 4XLCA 2NT9A 3JX8A 4XN0A 3NB2A 3VMWA 4KH3A 4YZ0A 3SZEA 4W8RA 1O8EA 1IB4A 2VFOA 3PSZA 3DU1X 4YZXA 1O8DA 1PXZA 2O04A 1QQ1A 2VJIA 1XG2A 1IDKA 1KTWA 4XMYA 2NT6A 2VJJA 4YDTA 4YC5A 1KCCA 1QRBA 1DBGA 2J8IA 2XTYA 4XLHA 1EA0A 4OZYA 2EWEA 1IDJA 1WXRA 4OZZA 2PYGA 4YEJA 2IQ7A 3GQ7A 2Z8GA 3B4NA 1KCDA 4XOPA 1TYWA 1L1IA 4URRA 1RMGA 4OJLA 4NK6A 2VFPA 4XLFA 1TSPA 4MXNA 2QZAA 2O0WA 1RWRA 4Z05A 4V02C 4XN3A 4JRAC 1O8KA 1BHEA 3GQ8A 4EW9A 1JRGA 1LM1A 5C1EA 4XKWA 4XR6A 2G0YA 1HG8A 1O8GA 4YZQA 4XORA 3RIQA 1CZFA 4OM9A 1GQ8A 2O17A 2X6YA 4XONA 2X6WA 4XLAA 3N6ZA 2VBKA 3SYJA 2X85A 1AIRA 1CLWA 2XC1A 1QA1A 4U4BA 3SQVA 5AMVA 2INVA 4OJ5A 1OGMX 4YCQA 4XKVA 4Z03A 3B8YA 1BN8A 1O8IA 3VMVA 1O8MA 1HF2A 2VFQA 2BSPA 2X6XA 3EQNA 3LMWA 4OJ6A 3AK5A 3VSUA 1DBOA 2O6WA 2ODLA 4XM3A 1IA5A 2VFNA 2O0VA 4XL9A 3SY2A 1QJVA 1K4ZA 1O8FA 2BX6A 2INUA 3B90A 2NSTA 5DNSA 1NHCA 1RU4A 2NTQA 4HWVA 4YZAA 2QY1A 1TYXA 2QX3A 3ZSCA 3LYCA 3LJYA 1PLUA 3SUCA 3ZPPA 1OOCA 3VSTA 2F3LA 1WMRA 1OFLA 2BM7A 1O88A 4U49A 3GQ9A 4OJPA 1DABA 2BM6A 1QRCA 2VFMA 4OPWA 2PECA 1QCXA 2W7ZA 2XTWA 2YUHA 1EZGA 4W8SA 4Z06A 5C1CA 2XT4A 1K8FA 3WWGA 1K5CA 1X0CA 2VBMA 1PE9A 4NK8A 1H80A 4C2LA 3P4GA 4AVZA 4W8TA 1O8JA 4XLEA 3EQOA 3H09A 1QA2A 2O1DA
chains in the Genus database with same CATH topology
2VFNA 4JRAC 1QA3A 5JMCB 3JX8A 1K4ZA 2BX6A 2G0YA 4KH3A 3SZEA 3RIQA 1TYXA 3LYCA 2VFOA 3LJYA 4OM9A 1TYUA 3ML3A 2IOUG 2F3LA 1TYVA 3BH7B 1QQ1A 1KQ5A 2BM7A 3N6ZA 3SYJA 2B0RA 4OJPA 1DABA 1CLWA 2BM6A 2XC1A 1QRCA 2VFMA 4OPWA 3TH0A 1QA1A 1QRBA 2W7ZA 2J8IA 2YUHA 2BM5A 1WXRA 2BM4A 4OJ5A 3N90A 1K8FA 2V5IA 4V02C 3PETA 1TYWA 4OJOA 4OJLA 1HF2A 2VFPA 4OJ6A 3P4GA 1TSPA 3AK5A 5JLVC 3H09A 1QA2A 3BH6B 2VFQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFN A;  1QA3 A;  4KH3 A;  3SZE A;  3RIQ A;  1TYX A;  2VFO A;  4OM9 A;  1TYU A;  3ML3 A;  2IOU G;  1TYV A;  1QQ1 A;  3SYJ A;  1DAB A;  2XC1 A;  1CLW A;  1QRC A;  2VFM A;  3TH0 A;  1QA1 A;  1QRB A;  1WXR A;  2V5I A;  1TYW A;  2VFP A;  3AK5 A;  1TSP A;  3H09 A;  1QA2 A;  2VFQ A; 
#chains in the Genus database with same CATH topology
 1QA3 A;  2NTB A;  4XOT A;  5JMC B;  4YEI A;  2QYU A;  4YEL A;  1VBL A;  3KRG A;  1LLW A;  2NZM A;  3GRH A;  3NAW A;  2QXZ A;  1TYU A;  2J8K A;  3ML3 A;  3UW0 A;  2IOU G;  1TYV A;  3BH7 B;  1KQ5 A;  2B0R A;  2X3H A;  4YFO A;  3PSS A;  1OFM A;  1OGO X;  2NTP A;  4MR0 A;  2BM5 A;  3TH0 A;  2BM4 A;  2UVE A;  1JTA A;  3N90 A;  2VBE A;  2V5I A;  4PMH A;  1EE6 A;  1OFE A;  4W8Q A;  3FY3 A;  3PET A;  4OJO A;  2NSP A;  3JUR A;  1O8L A;  3T9G A;  4XQF A;  2UVF A;  2PYH A;  2XT2 A;  1LLZ A;  3GQA A;  3VSV A;  5JLV C;  4XNF A;  1OFD A;  1O8H A;  3BH6 B;  2XTX A;  4I84 A;  4XLC A;  2NT9 A;  3JX8 A;  4XN0 A;  3NB2 A;  3VMW A;  4KH3 A;  4YZ0 A;  3SZE A;  4W8R A;  1O8E A;  1IB4 A;  2VFO A;  3PSZ A;  3DU1 X;  4YZX A;  1O8D A;  1PXZ A;  2O04 A;  1QQ1 A;  2VJI A;  1XG2 A;  1IDK A;  1KTW A;  4XMY A;  2NT6 A;  2VJJ A;  4YDT A;  4YC5 A;  1KCC A;  1QRB A;  1DBG A;  2J8I A;  2XTY A;  4XLH A;  1EA0 A;  4OZY A;  2EWE A;  1IDJ A;  1WXR A;  4OZZ A;  2PYG A;  4YEJ A;  2IQ7 A;  3GQ7 A;  2Z8G A;  3B4N A;  1KCD A;  4XOP A;  1TYW A;  1L1I A;  4URR A;  1RMG A;  4OJL A;  4NK6 A;  2VFP A;  4XLF A;  1TSP A;  4MXN A;  2QZA A;  2O0W A;  1RWR A;  4Z05 A;  4V02 C;  4XN3 A;  4JRA C;  1O8K A;  1BHE A;  3GQ8 A;  4EW9 A;  1JRG A;  1LM1 A;  5C1E A;  4XKW A;  4XR6 A;  2G0Y A;  1HG8 A;  1O8G A;  4YZQ A;  4XOR A;  3RIQ A;  1CZF A;  4OM9 A;  1GQ8 A;  2O17 A;  2X6Y A;  4XON A;  2X6W A;  4XLA A;  3N6Z A;  2VBK A;  3SYJ A;  2X85 A;  1AIR A;  1CLW A;  2XC1 A;  1QA1 A;  4U4B A;  3SQV A;  5AMV A;  2INV A;  4OJ5 A;  1OGM X;  4YCQ A;  4XKV A;  4Z03 A;  3B8Y A;  1BN8 A;  1O8I A;  3VMV A;  1O8M A;  1HF2 A;  2VFQ A;  2BSP A;  2X6X A;  3EQN A;  3LMW A;  4OJ6 A;  3AK5 A;  3VSU A;  1DBO A;  2O6W A;  2ODL A;  4XM3 A;  1IA5 A;  2VFN A;  2O0V A;  4XL9 A;  3SY2 A;  1QJV A;  1K4Z A;  1O8F A;  2BX6 A;  2INU A;  3B90 A;  2NST A;  5DNS A;  1NHC A;  1RU4 A;  2NTQ A;  4HWV A;  4YZA A;  2QY1 A;  1TYX A;  2QX3 A;  3ZSC A;  3LYC A;  3LJY A;  1PLU A;  3SUC A;  3ZPP A;  1OOC A;  3VST A;  2F3L A;  1WMR A;  1OFL A;  2BM7 A;  1O88 A;  4U49 A;  3GQ9 A;  4OJP A;  1DAB A;  2BM6 A;  1QRC A;  2VFM A;  4OPW A;  2PEC A;  1QCX A;  2W7Z A;  2XTW A;  2YUH A;  1EZG A;  4W8S A;  4Z06 A;  5C1C A;  2XT4 A;  1K8F A;  3WWG A;  1K5C A;  1X0C A;  2VBM A;  1PE9 A;  4NK8 A;  1H80 A;  4C2L A;  3P4G A;  4AVZ A;  4W8T A;  1O8J A;  4XLE A;  3EQO A;  3H09 A;  1QA2 A;  2O1D A; 
#chains in the Genus database with same CATH homology
 2VFN A;  4JRA C;  1QA3 A;  5JMC B;  3JX8 A;  1K4Z A;  2BX6 A;  2G0Y A;  4KH3 A;  3SZE A;  3RIQ A;  1TYX A;  3LYC A;  2VFO A;  3LJY A;  4OM9 A;  1TYU A;  3ML3 A;  2IOU G;  2F3L A;  1TYV A;  3BH7 B;  1QQ1 A;  1KQ5 A;  2BM7 A;  3N6Z A;  3SYJ A;  2B0R A;  4OJP A;  1DAB A;  1CLW A;  2BM6 A;  2XC1 A;  1QRC A;  2VFM A;  4OPW A;  3TH0 A;  1QA1 A;  1QRB A;  2W7Z A;  2J8I A;  2YUH A;  2BM5 A;  1WXR A;  2BM4 A;  4OJ5 A;  3N90 A;  1K8F A;  2V5I A;  4V02 C;  3PET A;  1TYW A;  4OJO A;  4OJL A;  1HF2 A;  2VFP A;  4OJ6 A;  3P4G A;  1TSP A;  3AK5 A;  5JLV C;  3H09 A;  1QA2 A;  3BH6 B;  2VFQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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