1TSPA

Crystal structure of p22 tailspike protein: interdigitated subunits in a thermostable trimer
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
544
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Late protein
molecule keywords TAILSPIKE-PROTEIN
publication title Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer.
pubmed rcsb
total genus 185
structure length 544
sequence length 554
ec nomenclature
pdb deposition date 1994-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tspA00
3SYJA 2XC1A 4KH3A 1QA3A 1TSPA 3SZEA 1TYUA 1QRBA 3ML3A 4OM9A 2V5IA 1CLWA 2IOUG 2VFPA 1QA1A 1QQ1A 1DABA 3H09A 3TH0A 1TYXA 2VFMA 3RIQA 2VFOA 1QRCA 1QA2A 1WXRA 1TYWA 3AK5A 1TYVA 2VFQA 2VFNA
chains in the Genus database with same CATH superfamily
4XORA 3N6ZA 3KRGA 3ZPPA 1KTWA 2X85A 3ZSCA 3SUCA 1KCCA 2XT4A 1O8KA 4YFOA 4OJ6A 5JMCB 2NT6A 2VJIA 4OJPA 2BX6A 4OM9A 4W8QA 2BM4A 2X3HA 2O04A 1AIRA 2PECA 1BHEA 1KCDA 1X0CA 4XMYA 1DBOA 1K4ZA 3UW0A 1O8LA 4PMHA 3H09A 4XLFA 1TYXA 3WWGA 3DU1X 4XLAA 3JX8A 2ODLA 3P4GA 4YZXA 2VFMA 3SQVA 1EA0A 2VFOA 2O0VA 4MXNA 1TYWA 3AK5A 4YZQA 3EQNA 2VFQA 5JLVC 2VFNA 1IB4A 2NTBA 2UVEA 1VBLA 4I84A 1PE9A 4U49A 3LMWA 2X6YA 2X6WA 1O8IA 2Z8GA 2EWEA 1KQ5A 1JTAA 1QRBA 3GQ9A 2NSPA 4XN0A 2XTWA 3SY2A 1H80A 1GQ8A 3JURA 3B8YA 1CLWA 2VFPA 2XT2A 3VMWA 1QA1A 3PSZA 1JRGA 1OFDA 1CZFA 1PLUA 4URRA 2NTQA 4XOTA 4XR6A 1O8GA 1LLWA 3RIQA 4XL9A 3LJYA 4XKWA 2NZMA 2VBMA 4XLHA 2BM7A 3N90A 4YZAA 2QZAA 2W7ZA 1LLZA 1IA5A 2QYUA 3SYJA 3VSUA 3GRHA 1OOCA 2XC1A 3B4NA 2INUA 2O0WA 1O8HA 3B90A 1O8DA 3NB2A 4XM3A 4KH3A 1QA3A 1O8MA 1QJVA 2YUHA 1IDJA 2VBEA 4OJ5A 4V02C 1NHCA 1TYUA 3EQOA 1IDKA 4YELA 2O6WA 2G0YA 4OZZA 2J8IA 3GQ8A 3GQ7A 3T9GA 5C1CA 2QY1A 2BM5A 4NK8A 2VBKA 1O88A 4Z03A 4XONA 2INVA 2XTYA 3NAWA 2O1DA 1K5CA 4AVZA 1QQ1A 1OFMA 1OGOX 5C1EA 4OJOA 4W8TA 4YEJA 3PSSA 4YEIA 1O8FA 1DBGA 1RMGA 2F3LA 2IQ7A 4XN3A 5AMVA 2PYGA 4JRAC 1QA2A 2B0RA 4OZYA 1LM1A 4OPWA 2NSTA 4XKVA 1RU4A 4C2LA 4W8SA 1EE6A 3BH7B 4XOPA 3VMVA 2O17A 3VSTA 4EW9A 4HWVA 4XQFA 4OJLA 1WMRA 2BSPA 4NK6A 3VSVA 2QXZA 1TSPA 3FY3A 1L1IA 3SZEA 4XLEA 1HG8A 2BM6A 2NTPA 3ML3A 4MR0A 1K8FA 2J8KA 4U4BA 4XLCA 2V5IA 1OFEA 4YDTA 4Z06A 5DNSA 1QCXA 2IOUG 1O8JA 2UVFA 1EZGA 1HF2A 2QX3A 3BH6B 1OGMX 4YC5A 4XNFA 3TH0A 1RWRA 4YZ0A 1DABA 2X6XA 3GQAA 2VJJA 2XTXA 4YCQA 1BN8A 1O8EA 2NT9A 2PYHA 3LYCA 1XG2A 1QRCA 1WXRA 1OFLA 1PXZA 3PETA 1TYVA 4Z05A 4W8RA
chains in the Genus database with same CATH topology
2W7ZA 3BH7B 3SYJA 2XC1A 3N6ZA 4OJLA 4KH3A 1QA3A 2YUHA 1TSPA 4OJ5A 4V02C 3SZEA 1KQ5A 1TYUA 1QRBA 2BM6A 2G0YA 2J8IA 4OJ6A 3ML3A 1K8FA 5JMCB 2BM5A 4OJPA 2BX6A 4OM9A 2V5IA 2BM4A 1CLWA 2IOUG 2VFPA 1HF2A 1QA1A 1K4ZA 1QQ1A 3BH6B 3H09A 3TH0A 4OJOA 1TYXA 1DABA 2F3LA 3JX8A 4OPWA 3P4GA 2VFMA 3RIQA 2VFOA 3LJYA 3LYCA 4JRAC 1QRCA 1QA2A 1WXRA 2B0RA 1TYWA 2BM7A 3N90A 1TYVA 3PETA 3AK5A 2VFQA 5JLVC 2VFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYJ A;  2XC1 A;  4KH3 A;  1QA3 A;  1TSP A;  3SZE A;  1TYU A;  1QRB A;  3ML3 A;  4OM9 A;  2V5I A;  1CLW A;  2IOU G;  2VFP A;  1QA1 A;  1QQ1 A;  1DAB A;  3H09 A;  3TH0 A;  1TYX A;  2VFM A;  3RIQ A;  2VFO A;  1QRC A;  1QA2 A;  1WXR A;  1TYW A;  3AK5 A;  1TYV A;  2VFQ A;  2VFN A; 
#chains in the Genus database with same CATH topology
 4XOR A;  3N6Z A;  3KRG A;  3ZPP A;  1KTW A;  2X85 A;  3ZSC A;  3SUC A;  1KCC A;  2XT4 A;  1O8K A;  4YFO A;  4OJ6 A;  5JMC B;  2NT6 A;  2VJI A;  4OJP A;  2BX6 A;  4OM9 A;  4W8Q A;  2BM4 A;  2X3H A;  2O04 A;  1AIR A;  2PEC A;  1BHE A;  1KCD A;  1X0C A;  4XMY A;  1DBO A;  1K4Z A;  3UW0 A;  1O8L A;  4PMH A;  3H09 A;  4XLF A;  1TYX A;  3WWG A;  3DU1 X;  4XLA A;  3JX8 A;  2ODL A;  3P4G A;  4YZX A;  2VFM A;  3SQV A;  1EA0 A;  2VFO A;  2O0V A;  4MXN A;  1TYW A;  3AK5 A;  4YZQ A;  3EQN A;  2VFQ A;  5JLV C;  2VFN A;  1IB4 A;  2NTB A;  2UVE A;  1VBL A;  4I84 A;  1PE9 A;  4U49 A;  3LMW A;  2X6Y A;  2X6W A;  1O8I A;  2Z8G A;  2EWE A;  1KQ5 A;  1JTA A;  1QRB A;  3GQ9 A;  2NSP A;  4XN0 A;  2XTW A;  3SY2 A;  1H80 A;  1GQ8 A;  3JUR A;  3B8Y A;  1CLW A;  2VFP A;  2XT2 A;  3VMW A;  1QA1 A;  3PSZ A;  1JRG A;  1OFD A;  1CZF A;  1PLU A;  4URR A;  2NTQ A;  4XOT A;  4XR6 A;  1O8G A;  1LLW A;  3RIQ A;  4XL9 A;  3LJY A;  4XKW A;  2NZM A;  2VBM A;  4XLH A;  2BM7 A;  3N90 A;  4YZA A;  2QZA A;  2W7Z A;  1LLZ A;  1IA5 A;  2QYU A;  3SYJ A;  3VSU A;  3GRH A;  1OOC A;  2XC1 A;  3B4N A;  2INU A;  2O0W A;  1O8H A;  3B90 A;  1O8D A;  3NB2 A;  4XM3 A;  4KH3 A;  1QA3 A;  1O8M A;  1QJV A;  2YUH A;  1IDJ A;  2VBE A;  4OJ5 A;  4V02 C;  1NHC A;  1TYU A;  3EQO A;  1IDK A;  4YEL A;  2O6W A;  2G0Y A;  4OZZ A;  2J8I A;  3GQ8 A;  3GQ7 A;  3T9G A;  5C1C A;  2QY1 A;  2BM5 A;  4NK8 A;  2VBK A;  1O88 A;  4Z03 A;  4XON A;  2INV A;  2XTY A;  3NAW A;  2O1D A;  1K5C A;  4AVZ A;  1QQ1 A;  1OFM A;  1OGO X;  5C1E A;  4OJO A;  4W8T A;  4YEJ A;  3PSS A;  4YEI A;  1O8F A;  1DBG A;  1RMG A;  2F3L A;  2IQ7 A;  4XN3 A;  5AMV A;  2PYG A;  4JRA C;  1QA2 A;  2B0R A;  4OZY A;  1LM1 A;  4OPW A;  2NST A;  4XKV A;  1RU4 A;  4C2L A;  4W8S A;  1EE6 A;  3BH7 B;  4XOP A;  3VMV A;  2O17 A;  3VST A;  4EW9 A;  4HWV A;  4XQF A;  4OJL A;  1WMR A;  2BSP A;  4NK6 A;  3VSV A;  2QXZ A;  1TSP A;  3FY3 A;  1L1I A;  3SZE A;  4XLE A;  1HG8 A;  2BM6 A;  2NTP A;  3ML3 A;  4MR0 A;  1K8F A;  2J8K A;  4U4B A;  4XLC A;  2V5I A;  1OFE A;  4YDT A;  4Z06 A;  5DNS A;  1QCX A;  2IOU G;  1O8J A;  2UVF A;  1EZG A;  1HF2 A;  2QX3 A;  3BH6 B;  1OGM X;  4YC5 A;  4XNF A;  3TH0 A;  1RWR A;  4YZ0 A;  1DAB A;  2X6X A;  3GQA A;  2VJJ A;  2XTX A;  4YCQ A;  1BN8 A;  1O8E A;  2NT9 A;  2PYH A;  3LYC A;  1XG2 A;  1QRC A;  1WXR A;  1OFL A;  1PXZ A;  3PET A;  1TYV A;  4Z05 A;  4W8R A; 
#chains in the Genus database with same CATH homology
 2W7Z A;  3BH7 B;  3SYJ A;  2XC1 A;  3N6Z A;  4OJL A;  4KH3 A;  1QA3 A;  2YUH A;  1TSP A;  4OJ5 A;  4V02 C;  3SZE A;  1KQ5 A;  1TYU A;  1QRB A;  2BM6 A;  2G0Y A;  2J8I A;  4OJ6 A;  3ML3 A;  1K8F A;  5JMC B;  2BM5 A;  4OJP A;  2BX6 A;  4OM9 A;  2V5I A;  2BM4 A;  1CLW A;  2IOU G;  2VFP A;  1HF2 A;  1QA1 A;  1K4Z A;  1QQ1 A;  3BH6 B;  3H09 A;  3TH0 A;  4OJO A;  1TYX A;  1DAB A;  2F3L A;  3JX8 A;  4OPW A;  3P4G A;  2VFM A;  3RIQ A;  2VFO A;  3LJY A;  3LYC A;  4JRA C;  1QRC A;  1QA2 A;  1WXR A;  2B0R A;  1TYW A;  2BM7 A;  3N90 A;  1TYV A;  3PET A;  3AK5 A;  2VFQ A;  5JLV C;  2VFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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