1DBOA

Crystal structure of chondroitinase b
Total Genus 179
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
481
structure length
481
Chain Sequence
QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords CHONDROITINASE B
publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
total genus 179
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dboA00
2O17A 2PECA 2VJIA 3GRHA 3VSUA 1KCDA 3SUCA 4OJLA 4PMHA 2IQ7A 2INUA 4W8RA 1BHEA 3UW0A 2VBKA 1WMRA 4OZYA 1BN8A 2BSPA 1OGMX 1OFMA 3VSVA 4U4BA 1NHCA 1VBLA 1O8KA 4MR0A 1IA5A 3VSTA 2VBEA 2QY1A 2PYHA 4XLAA 4XKWA 4XN0A 2VJJA 2PYGA 1JTAA 4XOPA 2O04A 2NTPA 3ZPPA 3GQ9A 4Z05A 1OFLA 2X6XA 4XR6A 1XG2A 2O0VA 4W8QA 3B90A 4YELA 1O8FA 1O8GA 2X85A 4W8SA 4XLCA 1CZFA 4XL9A 2X6YA 3ZSCA 1RWRA 3T9GA 3EQOA 1KTWA 4XONA 2EWEA 2NT6A 2ODLA 4XN3A 2NTBA 1OOCA 2NSPA 1HG8A 5C1EA 1K5CA 1H80A 3GQ8A 3VMWA 3B4NA 4OJ5A 4OJ6A 4XLHA 1GQ8A 4XKVA 2NT9A 2NZMA 1KCCA 2UVEA 1OGOX 2VBMA 4XM3A 4XORA 5AMVA 3GQ7A 1QJVA 3KRGA 1RU4A 4W8TA 4U49A 4YZQA 1DBOA 1IDKA 1JRGA 5C1CA 4XOTA 4XQFA 1QCXA 2O0WA 4URRA 1IB4A 3LMWA 4OJPA 1RMGA 3FY3A 2UVFA 3B8YA 4HWVA 1O8EA 1O8JA 1EE6A 1DBGA 4AVZA 4XMYA 1IDJA 4EW9A 4XNFA 4OJOA 4XLFA 2X6WA 1PXZA 3EQNA 1AIRA 1O8HA 4C2LA 4I84A 4OZZA 4YZXA 3VMVA 3WWGA 4Z03A 2Z8GA 3JURA 1PLUA 2NTQA 4YEJA 4YZAA 4XLEA 4YZ0A 2NSTA 2INVA 4NK8A 1O8MA 2QXZA 1X0CA 1O8IA 1O88A 2O1DA 1O8DA 2X3HA 4NK6A 1O8LA 1PE9A 3GQAA 4Z06A 4MXNA 2QX3A
chains in the Genus database with same CATH superfamily
5JMCB 2O17A 2PECA 2VJIA 4KH3A 3GRHA 3BH6B 3VSUA 1QA2A 4YC5A 1KCDA 3ML3A 3SUCA 2IOUG 4OJLA 4V02C 4PMHA 2IQ7A 2INUA 4XLFA 4W8RA 1BHEA 1EA0A 3UW0A 1CLWA 2VBKA 3PETA 1WMRA 4OZYA 1BN8A 3NB2A 1QRCA 1EZGA 2BSPA 1OGMX 1OFMA 3VSVA 2BX6A 2XC1A 4U4BA 1NHCA 4JRAC 2QYUA 1VBLA 1O8KA 2XT2A 2J8IA 4MR0A 1IA5A 3VSTA 1QQ1A 1KQ5A 2VBEA 2QY1A 2PYHA 3SY2A 1TYWA 3SZEA 4XLAA 1DABA 1LM1A 4XKWA 4XN0A 4XN3A 2VJJA 2PYGA 3LYCA 1K4ZA 1JTAA 1WXRA 4XOPA 2O04A 1LLZA 1TSPA 2NTPA 3GQ9A 3ZPPA 1OFDA 4Z05A 1OFLA 2VFPA 2X6XA 4YFOA 4XR6A 2QZAA 1XG2A 2O0VA 3N6ZA 4W8QA 3SYJA 2B0RA 2O6WA 3N90A 2XTXA 3PSSA 3B90A 4YELA 1O8FA 1O8GA 2X85A 4W8SA 4XLCA 1CZFA 3BH7B 2X6YA 4XL9A 1RWRA 3T9GA 3EQOA 1KTWA 4XONA 3ZSCA 1TYVA 2EWEA 2NT6A 2ODLA 1OOCA 2NTBA 2NSPA 1HG8A 2XTYA 4OPWA 1H80A 3GQ8A 1K5CA 3VMWA 3B4NA 4OJ5A 2BM5A 4OJ6A 2BM6A 4XLHA 1GQ8A 1TYXA 4XKVA 3RIQA 2NT9A 2NZMA 1KCCA 1L1IA 2UVEA 3H09A 1OGOX 2VBMA 4XM3A 4XORA 5AMVA 3GQ7A 1QA3A 1QJVA 3KRGA 1RU4A 2YUHA 2XT4A 1OFEA 2BM4A 4W8TA 4U49A 4YZQA 1DBOA 1IDKA 1JRGA 4YCQA 5C1CA 4XOTA 4XQFA 1QCXA 2O0WA 4URRA 3SQVA 1IB4A 3LMWA 4OJPA 1RMGA 3FY3A 2UVFA 3B8YA 2VFNA 4HWVA 3AK5A 2G0YA 1O8EA 1O8JA 1EE6A 1DBGA 1TYUA 3DU1X 4AVZA 4XMYA 5JLVC 1IDJA 4EW9A 4XNFA 2V5IA 4OJOA 3LJYA 2X6WA 4OM9A 3NAWA 1K8FA 1PXZA 3EQNA 2VFOA 1AIRA 1O8HA 4C2LA 4I84A 4OZZA 4YZXA 3VMVA 5DNSA 3WWGA 4Z03A 3PSZA 1LLWA 2Z8GA 3JURA 1PLUA 2NTQA 4YEJA 2VFQA 4YZAA 4XLEA 5C1EA 4YEIA 2XTWA 1HF2A 4YDTA 4YZ0A 2F3LA 2NSTA 2INVA 4NK8A 1O8MA 2QXZA 2BM7A 1X0CA 3P4GA 1O8IA 2J8KA 1QRBA 1O88A 2O1DA 2VFMA 1O8DA 2W7ZA 2X3HA 4NK6A 1O8LA 3JX8A 3TH0A 1QA1A 1PE9A 3GQAA 4Z06A 4MXNA 2QX3A
chains in the Genus database with same CATH topology
2O17A 2PECA 2VJIA 3GRHA 3VSUA 1KCDA 3SUCA 4OJLA 4PMHA 2IQ7A 2INUA 4W8RA 1BHEA 3UW0A 2VBKA 1WMRA 4OZYA 1BN8A 2BSPA 1OGMX 1OFMA 3VSVA 4U4BA 1NHCA 1VBLA 1O8KA 4MR0A 1IA5A 3VSTA 2VBEA 2QY1A 2PYHA 4XLAA 4XKWA 4XN0A 2VJJA 2PYGA 1JTAA 4XOPA 2O04A 2NTPA 3ZPPA 3GQ9A 4Z05A 1OFLA 2X6XA 4XR6A 1XG2A 2O0VA 4W8QA 3B90A 4YELA 1O8FA 1O8GA 2X85A 4W8SA 4XLCA 1CZFA 4XL9A 2X6YA 3ZSCA 1RWRA 3T9GA 3EQOA 1KTWA 4XONA 2EWEA 2NT6A 2ODLA 4XN3A 2NTBA 1OOCA 2NSPA 1HG8A 5C1EA 1K5CA 1H80A 3GQ8A 3VMWA 3B4NA 4OJ5A 4OJ6A 4XLHA 1GQ8A 4XKVA 2NT9A 2NZMA 1KCCA 2UVEA 1OGOX 2VBMA 4XM3A 4XORA 5AMVA 3GQ7A 1QJVA 3KRGA 1RU4A 4W8TA 4U49A 4YZQA 1DBOA 1IDKA 1JRGA 5C1CA 4XOTA 4XQFA 1QCXA 2O0WA 4URRA 1IB4A 3LMWA 4OJPA 1RMGA 3FY3A 2UVFA 3B8YA 4HWVA 1O8EA 1O8JA 1EE6A 1DBGA 4AVZA 4XMYA 1IDJA 4EW9A 4XNFA 4OJOA 4XLFA 2X6WA 1PXZA 3EQNA 1AIRA 1O8HA 4C2LA 4I84A 4OZZA 4YZXA 3VMVA 3WWGA 4Z03A 2Z8GA 3JURA 1PLUA 2NTQA 4YEJA 4YZAA 4XLEA 4YZ0A 2NSTA 2INVA 4NK8A 1O8MA 2QXZA 1X0CA 1O8IA 1O88A 2O1DA 1O8DA 2X3HA 4NK6A 1O8LA 1PE9A 3GQAA 4Z06A 4MXNA 2QX3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O17 A;  2PEC A;  2VJI A;  3GRH A;  3VSU A;  1KCD A;  3SUC A;  4OJL A;  4PMH A;  2IQ7 A;  2INU A;  4W8R A;  1BHE A;  3UW0 A;  2VBK A;  1WMR A;  4OZY A;  1BN8 A;  2BSP A;  1OGM X;  1OFM A;  3VSV A;  4U4B A;  1NHC A;  1VBL A;  1O8K A;  4MR0 A;  1IA5 A;  3VST A;  2VBE A;  2QY1 A;  2PYH A;  4XLA A;  4XKW A;  4XN0 A;  2VJJ A;  2PYG A;  1JTA A;  4XOP A;  2O04 A;  2NTP A;  3ZPP A;  3GQ9 A;  4Z05 A;  1OFL A;  2X6X A;  4XR6 A;  1XG2 A;  2O0V A;  4W8Q A;  3B90 A;  4YEL A;  1O8F A;  1O8G A;  2X85 A;  4W8S A;  4XLC A;  1CZF A;  4XL9 A;  2X6Y A;  3ZSC A;  1RWR A;  3T9G A;  3EQO A;  1KTW A;  4XON A;  2EWE A;  2NT6 A;  2ODL A;  4XN3 A;  2NTB A;  1OOC A;  2NSP A;  1HG8 A;  5C1E A;  1K5C A;  1H80 A;  3GQ8 A;  3VMW A;  3B4N A;  4OJ5 A;  4OJ6 A;  4XLH A;  1GQ8 A;  4XKV A;  2NT9 A;  2NZM A;  1KCC A;  2UVE A;  1OGO X;  2VBM A;  4XM3 A;  4XOR A;  5AMV A;  3GQ7 A;  1QJV A;  3KRG A;  1RU4 A;  4W8T A;  4U49 A;  4YZQ A;  1DBO A;  1IDK A;  1JRG A;  5C1C A;  4XOT A;  4XQF A;  1QCX A;  2O0W A;  4URR A;  1IB4 A;  3LMW A;  4OJP A;  1RMG A;  3FY3 A;  2UVF A;  3B8Y A;  4HWV A;  1O8E A;  1O8J A;  1EE6 A;  1DBG A;  4AVZ A;  4XMY A;  1IDJ A;  4EW9 A;  4XNF A;  4OJO A;  4XLF A;  2X6W A;  1PXZ A;  3EQN A;  1AIR A;  1O8H A;  4C2L A;  4I84 A;  4OZZ A;  4YZX A;  3VMV A;  3WWG A;  4Z03 A;  2Z8G A;  3JUR A;  1PLU A;  2NTQ A;  4YEJ A;  4YZA A;  4XLE A;  4YZ0 A;  2NST A;  2INV A;  4NK8 A;  1O8M A;  2QXZ A;  1X0C A;  1O8I A;  1O88 A;  2O1D A;  1O8D A;  2X3H A;  4NK6 A;  1O8L A;  1PE9 A;  3GQA A;  4Z06 A;  4MXN A;  2QX3 A; 
#chains in the Genus database with same CATH topology
 5JMC B;  2O17 A;  2PEC A;  2VJI A;  4KH3 A;  3GRH A;  3BH6 B;  3VSU A;  1QA2 A;  4YC5 A;  1KCD A;  3ML3 A;  3SUC A;  2IOU G;  4OJL A;  4V02 C;  4PMH A;  2IQ7 A;  2INU A;  4XLF A;  4W8R A;  1BHE A;  1EA0 A;  3UW0 A;  1CLW A;  2VBK A;  3PET A;  1WMR A;  4OZY A;  1BN8 A;  3NB2 A;  1QRC A;  1EZG A;  2BSP A;  1OGM X;  1OFM A;  3VSV A;  2BX6 A;  2XC1 A;  4U4B A;  1NHC A;  4JRA C;  2QYU A;  1VBL A;  1O8K A;  2XT2 A;  2J8I A;  4MR0 A;  1IA5 A;  3VST A;  1QQ1 A;  1KQ5 A;  2VBE A;  2QY1 A;  2PYH A;  3SY2 A;  1TYW A;  3SZE A;  4XLA A;  1DAB A;  1LM1 A;  4XKW A;  4XN0 A;  4XN3 A;  2VJJ A;  2PYG A;  3LYC A;  1K4Z A;  1JTA A;  1WXR A;  4XOP A;  2O04 A;  1LLZ A;  1TSP A;  2NTP A;  3GQ9 A;  3ZPP A;  1OFD A;  4Z05 A;  1OFL A;  2VFP A;  2X6X A;  4YFO A;  4XR6 A;  2QZA A;  1XG2 A;  2O0V A;  3N6Z A;  4W8Q A;  3SYJ A;  2B0R A;  2O6W A;  3N90 A;  2XTX A;  3PSS A;  3B90 A;  4YEL A;  1O8F A;  1O8G A;  2X85 A;  4W8S A;  4XLC A;  1CZF A;  3BH7 B;  2X6Y A;  4XL9 A;  1RWR A;  3T9G A;  3EQO A;  1KTW A;  4XON A;  3ZSC A;  1TYV A;  2EWE A;  2NT6 A;  2ODL A;  1OOC A;  2NTB A;  2NSP A;  1HG8 A;  2XTY A;  4OPW A;  1H80 A;  3GQ8 A;  1K5C A;  3VMW A;  3B4N A;  4OJ5 A;  2BM5 A;  4OJ6 A;  2BM6 A;  4XLH A;  1GQ8 A;  1TYX A;  4XKV A;  3RIQ A;  2NT9 A;  2NZM A;  1KCC A;  1L1I A;  2UVE A;  3H09 A;  1OGO X;  2VBM A;  4XM3 A;  4XOR A;  5AMV A;  3GQ7 A;  1QA3 A;  1QJV A;  3KRG A;  1RU4 A;  2YUH A;  2XT4 A;  1OFE A;  2BM4 A;  4W8T A;  4U49 A;  4YZQ A;  1DBO A;  1IDK A;  1JRG A;  4YCQ A;  5C1C A;  4XOT A;  4XQF A;  1QCX A;  2O0W A;  4URR A;  3SQV A;  1IB4 A;  3LMW A;  4OJP A;  1RMG A;  3FY3 A;  2UVF A;  3B8Y A;  2VFN A;  4HWV A;  3AK5 A;  2G0Y A;  1O8E A;  1O8J A;  1EE6 A;  1DBG A;  1TYU A;  3DU1 X;  4AVZ A;  4XMY A;  5JLV C;  1IDJ A;  4EW9 A;  4XNF A;  2V5I A;  4OJO A;  3LJY A;  2X6W A;  4OM9 A;  3NAW A;  1K8F A;  1PXZ A;  3EQN A;  2VFO A;  1AIR A;  1O8H A;  4C2L A;  4I84 A;  4OZZ A;  4YZX A;  3VMV A;  5DNS A;  3WWG A;  4Z03 A;  3PSZ A;  1LLW A;  2Z8G A;  3JUR A;  1PLU A;  2NTQ A;  4YEJ A;  2VFQ A;  4YZA A;  4XLE A;  5C1E A;  4YEI A;  2XTW A;  1HF2 A;  4YDT A;  4YZ0 A;  2F3L A;  2NST A;  2INV A;  4NK8 A;  1O8M A;  2QXZ A;  2BM7 A;  1X0C A;  3P4G A;  1O8I A;  2J8K A;  1QRB A;  1O88 A;  2O1D A;  2VFM A;  1O8D A;  2W7Z A;  2X3H A;  4NK6 A;  1O8L A;  3JX8 A;  3TH0 A;  1QA1 A;  1PE9 A;  3GQA A;  4Z06 A;  4MXN A;  2QX3 A; 
#chains in the Genus database with same CATH homology
 2O17 A;  2PEC A;  2VJI A;  3GRH A;  3VSU A;  1KCD A;  3SUC A;  4OJL A;  4PMH A;  2IQ7 A;  2INU A;  4W8R A;  1BHE A;  3UW0 A;  2VBK A;  1WMR A;  4OZY A;  1BN8 A;  2BSP A;  1OGM X;  1OFM A;  3VSV A;  4U4B A;  1NHC A;  1VBL A;  1O8K A;  4MR0 A;  1IA5 A;  3VST A;  2VBE A;  2QY1 A;  2PYH A;  4XLA A;  4XKW A;  4XN0 A;  2VJJ A;  2PYG A;  1JTA A;  4XOP A;  2O04 A;  2NTP A;  3ZPP A;  3GQ9 A;  4Z05 A;  1OFL A;  2X6X A;  4XR6 A;  1XG2 A;  2O0V A;  4W8Q A;  3B90 A;  4YEL A;  1O8F A;  1O8G A;  2X85 A;  4W8S A;  4XLC A;  1CZF A;  4XL9 A;  2X6Y A;  3ZSC A;  1RWR A;  3T9G A;  3EQO A;  1KTW A;  4XON A;  2EWE A;  2NT6 A;  2ODL A;  4XN3 A;  2NTB A;  1OOC A;  2NSP A;  1HG8 A;  5C1E A;  1K5C A;  1H80 A;  3GQ8 A;  3VMW A;  3B4N A;  4OJ5 A;  4OJ6 A;  4XLH A;  1GQ8 A;  4XKV A;  2NT9 A;  2NZM A;  1KCC A;  2UVE A;  1OGO X;  2VBM A;  4XM3 A;  4XOR A;  5AMV A;  3GQ7 A;  1QJV A;  3KRG A;  1RU4 A;  4W8T A;  4U49 A;  4YZQ A;  1DBO A;  1IDK A;  1JRG A;  5C1C A;  4XOT A;  4XQF A;  1QCX A;  2O0W A;  4URR A;  1IB4 A;  3LMW A;  4OJP A;  1RMG A;  3FY3 A;  2UVF A;  3B8Y A;  4HWV A;  1O8E A;  1O8J A;  1EE6 A;  1DBG A;  4AVZ A;  4XMY A;  1IDJ A;  4EW9 A;  4XNF A;  4OJO A;  4XLF A;  2X6W A;  1PXZ A;  3EQN A;  1AIR A;  1O8H A;  4C2L A;  4I84 A;  4OZZ A;  4YZX A;  3VMV A;  3WWG A;  4Z03 A;  2Z8G A;  3JUR A;  1PLU A;  2NTQ A;  4YEJ A;  4YZA A;  4XLE A;  4YZ0 A;  2NST A;  2INV A;  4NK8 A;  1O8M A;  2QXZ A;  1X0C A;  1O8I A;  1O88 A;  2O1D A;  1O8D A;  2X3H A;  4NK6 A;  1O8L A;  1PE9 A;  3GQA A;  4Z06 A;  4MXN A;  2QX3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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