1DBOA

Crystal structure of chondroitinase b
Total Genus 179
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
481
structure length
481
Chain Sequence
QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
molecule tags Lyase
total genus 179
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dboA00
4XOPA 3B4NA 2NTBA 2PYGA 3ZPPA 3B90A 2O17A 2X6YA 1IB4A 2X3HA 4C2LA 1OGMX 2NSPA 4W8QA 1IDKA 1DBOA 1BHEA 4OZYA 4YZ0A 1O8DA 3SUCA 4XN3A 3WWGA 4XR6A 4URRA 3VMWA 2EWEA 2X6WA 1O88A 1O8HA 2O0WA 4W8RA 4W8TA 4XLFA 2NSTA 3VMVA 1QCXA 1PXZA 1RMGA 4W8SA 4EW9A 1AIRA 1VBLA 3GQ8A 1O8EA 4Z05A 1HG8A 1O8MA 4XMYA 2VJJA 1O8JA 4XKWA 2VBKA 1GQ8A 4YEJA 2PECA 2UVFA 4NK6A 2VBMA 1XG2A 3UW0A 1KCDA 1RU4A 1O8KA 3GQ9A 1IA5A 4PMHA 1BN8A 4XORA 3T9GA 2QX3A 3GQ7A 5C1EA 2PYHA 1O8LA 2INUA 3JURA 4XLAA 4XKVA 4U4BA 3B8YA 1H80A 1K5CA 4XONA 1OOCA 4OJPA 1OGOX 2IQ7A 2O1DA 2NT6A 1O8FA 1X0CA 4MR0A 3VSVA 4XM3A 1WMRA 3LMWA 1KTWA 1RWRA 1PLUA 4YZXA 1IDJA 2X6XA 1OFMA 3KRGA 4XLHA 3GQAA 4MXNA 2NTPA 2ODLA 3FY3A 4YZAA 1KCCA 4XOTA 2BSPA 4NK8A 4XL9A 4I84A 4XLCA 4HWVA 4XN0A 4Z06A 2NZMA 1JRGA 2UVEA 3GRHA 4XQFA 1O8IA 4OZZA 2VJIA 3VSUA 2QY1A 4OJOA 4U49A 4YZQA 5C1CA 4Z03A 2NT9A 2NTQA 1QJVA 2X85A 1CZFA 1O8GA 3EQNA 1JTAA 1OFLA 5AMVA 2INVA 1DBGA 4OJ6A 4YELA 1NHCA 4XLEA 4OJLA 4AVZA 1PE9A 2Z8GA 3EQOA 1EE6A 4OJ5A 2O04A 2QXZA 2VBEA 2O0VA 3VSTA 3ZSCA 4XNFA
chains in the Genus database with same CATH superfamily
3ML3A 3B4NA 2NTBA 3P4GA 2PYGA 4XOPA 3SQVA 3ZPPA 3B90A 2O17A 2X6YA 3NAWA 1IB4A 2X3HA 4C2LA 1OGMX 2NSPA 4W8QA 1IDKA 1DBOA 1BHEA 4OZYA 4YZ0A 1O8DA 3SUCA 1CLWA 1QRBA 1QRCA 3PSSA 4XN3A 2XTXA 3WWGA 4XR6A 4URRA 3VMWA 2EWEA 2X6WA 1O88A 1O8HA 2O0WA 3LYCA 4W8TA 4W8RA 1TYXA 4XLFA 2NSTA 3VMVA 2XT2A 1QCXA 1PXZA 1RMGA 4W8SA 1TYVA 2XTWA 3BH7B 2XT4A 4EW9A 1AIRA 1VBLA 3GQ8A 3TH0A 1O8EA 3JX8A 1TYWA 4Z05A 1HG8A 1O8MA 4XMYA 2VJJA 1O8JA 3PETA 4XKWA 4YFOA 1L1IA 2VBKA 1GQ8A 3RIQA 1QA1A 1QA2A 3AK5A 4YEJA 2PECA 4KH3A 2YUHA 4YC5A 2UVFA 3LJYA 1DABA 2VFNA 4NK6A 2W7ZA 3N90A 2VBMA 1XG2A 2QZAA 3UW0A 1KCDA 1RU4A 1O8KA 3GQ9A 2BM7A 1IA5A 5DNSA 4PMHA 1K4ZA 1BN8A 2BX6A 4XORA 3T9GA 2QX3A 3GQ7A 5C1EA 2PYHA 1LLZA 1O8LA 1KQ5A 2F3LA 2INUA 3JURA 4XLAA 1OFDA 4U4BA 4XKVA 5JMCB 3B8YA 1H80A 1K5CA 4YDTA 4XONA 1OOCA 4OJPA 1OGOX 2XC1A 2IQ7A 2O1DA 2NT6A 1O8FA 1X0CA 4MR0A 3NB2A 4XM3A 3VSVA 1WMRA 1OFEA 1LM1A 1QQ1A 1KTWA 3LMWA 1RWRA 1QA3A 1PLUA 3DU1X 4YZXA 1IDJA 2O6WA 2X6XA 1OFMA 3KRGA 4V02C 2BM5A 3SYJA 1WXRA 4XLHA 2BM6A 4YCQA 3GQAA 4MXNA 2NTPA 4OM9A 2ODLA 3FY3A 4YZAA 1KCCA 4XOTA 2BSPA 4NK8A 4XL9A 3SY2A 2XTYA 4I84A 4XLCA 4HWVA 4XN0A 4Z06A 2NZMA 2J8KA 1JRGA 1HF2A 2VFMA 2UVEA 3GRHA 3SZEA 3PSZA 4XQFA 1LLWA 1O8IA 3N6ZA 4OZZA 1TYUA 2VJIA 3VSUA 2QY1A 4OJOA 4U49A 4YEIA 4YZQA 5C1CA 4Z03A 2NT9A 2NTQA 1QJVA 2X85A 1CZFA 1O8GA 2G0YA 3EQNA 1JTAA 1OFLA 2V5IA 5AMVA 3BH6B 2INVA 1DBGA 4JRAC 1K8FA 4OJ6A 2VFOA 4YELA 1NHCA 1TSPA 2IOUG 2B0RA 4OJLA 4XLEA 4AVZA 1EA0A 1PE9A 2Z8GA 2BM4A 3EQOA 1EE6A 4OJ5A 2O04A 2J8IA 2QXZA 2VBEA 2O0VA 4OPWA 3H09A 3VSTA 2QYUA 1EZGA 3ZSCA 4XNFA 5JLVC 2VFPA 2VFQA
chains in the Genus database with same CATH topology
4XOPA 3B4NA 2NTBA 2PYGA 3ZPPA 3B90A 2O17A 2X6YA 1IB4A 2X3HA 4C2LA 1OGMX 2NSPA 4W8QA 1IDKA 1DBOA 1BHEA 4OZYA 4YZ0A 1O8DA 3SUCA 4XN3A 3WWGA 4XR6A 4URRA 3VMWA 2EWEA 2X6WA 1O88A 1O8HA 2O0WA 4W8RA 4W8TA 4XLFA 2NSTA 3VMVA 1QCXA 1PXZA 1RMGA 4W8SA 4EW9A 1AIRA 1VBLA 3GQ8A 1O8EA 4Z05A 1HG8A 1O8MA 4XMYA 2VJJA 1O8JA 4XKWA 2VBKA 1GQ8A 4YEJA 2PECA 2UVFA 4NK6A 2VBMA 1XG2A 3UW0A 1KCDA 1RU4A 1O8KA 3GQ9A 1IA5A 4PMHA 1BN8A 4XORA 3T9GA 2QX3A 3GQ7A 5C1EA 2PYHA 1O8LA 2INUA 3JURA 4XLAA 4XKVA 4U4BA 3B8YA 1H80A 1K5CA 4XONA 1OOCA 4OJPA 1OGOX 2IQ7A 2O1DA 2NT6A 1O8FA 1X0CA 4MR0A 3VSVA 4XM3A 1WMRA 3LMWA 1KTWA 1RWRA 1PLUA 4YZXA 1IDJA 2X6XA 1OFMA 3KRGA 4XLHA 3GQAA 4MXNA 2NTPA 2ODLA 3FY3A 4YZAA 1KCCA 4XOTA 2BSPA 4NK8A 4XL9A 4I84A 4XLCA 4HWVA 4XN0A 4Z06A 2NZMA 1JRGA 2UVEA 3GRHA 4XQFA 1O8IA 4OZZA 2VJIA 3VSUA 2QY1A 4OJOA 4U49A 4YZQA 5C1CA 4Z03A 2NT9A 2NTQA 1QJVA 2X85A 1CZFA 1O8GA 3EQNA 1JTAA 1OFLA 5AMVA 2INVA 1DBGA 4OJ6A 4YELA 1NHCA 4XLEA 4OJLA 4AVZA 1PE9A 2Z8GA 3EQOA 1EE6A 4OJ5A 2O04A 2QXZA 2VBEA 2O0VA 3VSTA 3ZSCA 4XNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XOP A;  3B4N A;  2NTB A;  2PYG A;  3ZPP A;  3B90 A;  2O17 A;  2X6Y A;  1IB4 A;  2X3H A;  4C2L A;  1OGM X;  2NSP A;  4W8Q A;  1IDK A;  1DBO A;  1BHE A;  4OZY A;  4YZ0 A;  1O8D A;  3SUC A;  4XN3 A;  3WWG A;  4XR6 A;  4URR A;  3VMW A;  2EWE A;  2X6W A;  1O88 A;  1O8H A;  2O0W A;  4W8R A;  4W8T A;  4XLF A;  2NST A;  3VMV A;  1QCX A;  1PXZ A;  1RMG A;  4W8S A;  4EW9 A;  1AIR A;  1VBL A;  3GQ8 A;  1O8E A;  4Z05 A;  1HG8 A;  1O8M A;  4XMY A;  2VJJ A;  1O8J A;  4XKW A;  2VBK A;  1GQ8 A;  4YEJ A;  2PEC A;  2UVF A;  4NK6 A;  2VBM A;  1XG2 A;  3UW0 A;  1KCD A;  1RU4 A;  1O8K A;  3GQ9 A;  1IA5 A;  4PMH A;  1BN8 A;  4XOR A;  3T9G A;  2QX3 A;  3GQ7 A;  5C1E A;  2PYH A;  1O8L A;  2INU A;  3JUR A;  4XLA A;  4XKV A;  4U4B A;  3B8Y A;  1H80 A;  1K5C A;  4XON A;  1OOC A;  4OJP A;  1OGO X;  2IQ7 A;  2O1D A;  2NT6 A;  1O8F A;  1X0C A;  4MR0 A;  3VSV A;  4XM3 A;  1WMR A;  3LMW A;  1KTW A;  1RWR A;  1PLU A;  4YZX A;  1IDJ A;  2X6X A;  1OFM A;  3KRG A;  4XLH A;  3GQA A;  4MXN A;  2NTP A;  2ODL A;  3FY3 A;  4YZA A;  1KCC A;  4XOT A;  2BSP A;  4NK8 A;  4XL9 A;  4I84 A;  4XLC A;  4HWV A;  4XN0 A;  4Z06 A;  2NZM A;  1JRG A;  2UVE A;  3GRH A;  4XQF A;  1O8I A;  4OZZ A;  2VJI A;  3VSU A;  2QY1 A;  4OJO A;  4U49 A;  4YZQ A;  5C1C A;  4Z03 A;  2NT9 A;  2NTQ A;  1QJV A;  2X85 A;  1CZF A;  1O8G A;  3EQN A;  1JTA A;  1OFL A;  5AMV A;  2INV A;  1DBG A;  4OJ6 A;  4YEL A;  1NHC A;  4XLE A;  4OJL A;  4AVZ A;  1PE9 A;  2Z8G A;  3EQO A;  1EE6 A;  4OJ5 A;  2O04 A;  2QXZ A;  2VBE A;  2O0V A;  3VST A;  3ZSC A;  4XNF A; 
#chains in the Genus database with same CATH topology
 3ML3 A;  3B4N A;  2NTB A;  3P4G A;  2PYG A;  4XOP A;  3SQV A;  3ZPP A;  3B90 A;  2O17 A;  2X6Y A;  3NAW A;  1IB4 A;  2X3H A;  4C2L A;  1OGM X;  2NSP A;  4W8Q A;  1IDK A;  1DBO A;  1BHE A;  4OZY A;  4YZ0 A;  1O8D A;  3SUC A;  1CLW A;  1QRB A;  1QRC A;  3PSS A;  4XN3 A;  2XTX A;  3WWG A;  4XR6 A;  4URR A;  3VMW A;  2EWE A;  2X6W A;  1O88 A;  1O8H A;  2O0W A;  3LYC A;  4W8T A;  4W8R A;  1TYX A;  4XLF A;  2NST A;  3VMV A;  2XT2 A;  1QCX A;  1PXZ A;  1RMG A;  4W8S A;  1TYV A;  2XTW A;  3BH7 B;  2XT4 A;  4EW9 A;  1AIR A;  1VBL A;  3GQ8 A;  3TH0 A;  1O8E A;  3JX8 A;  1TYW A;  4Z05 A;  1HG8 A;  1O8M A;  4XMY A;  2VJJ A;  1O8J A;  3PET A;  4XKW A;  4YFO A;  1L1I A;  2VBK A;  1GQ8 A;  3RIQ A;  1QA1 A;  1QA2 A;  3AK5 A;  4YEJ A;  2PEC A;  4KH3 A;  2YUH A;  4YC5 A;  2UVF A;  3LJY A;  1DAB A;  2VFN A;  4NK6 A;  2W7Z A;  3N90 A;  2VBM A;  1XG2 A;  2QZA A;  3UW0 A;  1KCD A;  1RU4 A;  1O8K A;  3GQ9 A;  2BM7 A;  1IA5 A;  5DNS A;  4PMH A;  1K4Z A;  1BN8 A;  2BX6 A;  4XOR A;  3T9G A;  2QX3 A;  3GQ7 A;  5C1E A;  2PYH A;  1LLZ A;  1O8L A;  1KQ5 A;  2F3L A;  2INU A;  3JUR A;  4XLA A;  1OFD A;  4U4B A;  4XKV A;  5JMC B;  3B8Y A;  1H80 A;  1K5C A;  4YDT A;  4XON A;  1OOC A;  4OJP A;  1OGO X;  2XC1 A;  2IQ7 A;  2O1D A;  2NT6 A;  1O8F A;  1X0C A;  4MR0 A;  3NB2 A;  4XM3 A;  3VSV A;  1WMR A;  1OFE A;  1LM1 A;  1QQ1 A;  1KTW A;  3LMW A;  1RWR A;  1QA3 A;  1PLU A;  3DU1 X;  4YZX A;  1IDJ A;  2O6W A;  2X6X A;  1OFM A;  3KRG A;  4V02 C;  2BM5 A;  3SYJ A;  1WXR A;  4XLH A;  2BM6 A;  4YCQ A;  3GQA A;  4MXN A;  2NTP A;  4OM9 A;  2ODL A;  3FY3 A;  4YZA A;  1KCC A;  4XOT A;  2BSP A;  4NK8 A;  4XL9 A;  3SY2 A;  2XTY A;  4I84 A;  4XLC A;  4HWV A;  4XN0 A;  4Z06 A;  2NZM A;  2J8K A;  1JRG A;  1HF2 A;  2VFM A;  2UVE A;  3GRH A;  3SZE A;  3PSZ A;  4XQF A;  1LLW A;  1O8I A;  3N6Z A;  4OZZ A;  1TYU A;  2VJI A;  3VSU A;  2QY1 A;  4OJO A;  4U49 A;  4YEI A;  4YZQ A;  5C1C A;  4Z03 A;  2NT9 A;  2NTQ A;  1QJV A;  2X85 A;  1CZF A;  1O8G A;  2G0Y A;  3EQN A;  1JTA A;  1OFL A;  2V5I A;  5AMV A;  3BH6 B;  2INV A;  1DBG A;  4JRA C;  1K8F A;  4OJ6 A;  2VFO A;  4YEL A;  1NHC A;  1TSP A;  2IOU G;  2B0R A;  4OJL A;  4XLE A;  4AVZ A;  1EA0 A;  1PE9 A;  2Z8G A;  2BM4 A;  3EQO A;  1EE6 A;  4OJ5 A;  2O04 A;  2J8I A;  2QXZ A;  2VBE A;  2O0V A;  4OPW A;  3H09 A;  3VST A;  2QYU A;  1EZG A;  3ZSC A;  4XNF A;  5JLV C;  2VFP A;  2VFQ A; 
#chains in the Genus database with same CATH homology
 4XOP A;  3B4N A;  2NTB A;  2PYG A;  3ZPP A;  3B90 A;  2O17 A;  2X6Y A;  1IB4 A;  2X3H A;  4C2L A;  1OGM X;  2NSP A;  4W8Q A;  1IDK A;  1DBO A;  1BHE A;  4OZY A;  4YZ0 A;  1O8D A;  3SUC A;  4XN3 A;  3WWG A;  4XR6 A;  4URR A;  3VMW A;  2EWE A;  2X6W A;  1O88 A;  1O8H A;  2O0W A;  4W8R A;  4W8T A;  4XLF A;  2NST A;  3VMV A;  1QCX A;  1PXZ A;  1RMG A;  4W8S A;  4EW9 A;  1AIR A;  1VBL A;  3GQ8 A;  1O8E A;  4Z05 A;  1HG8 A;  1O8M A;  4XMY A;  2VJJ A;  1O8J A;  4XKW A;  2VBK A;  1GQ8 A;  4YEJ A;  2PEC A;  2UVF A;  4NK6 A;  2VBM A;  1XG2 A;  3UW0 A;  1KCD A;  1RU4 A;  1O8K A;  3GQ9 A;  1IA5 A;  4PMH A;  1BN8 A;  4XOR A;  3T9G A;  2QX3 A;  3GQ7 A;  5C1E A;  2PYH A;  1O8L A;  2INU A;  3JUR A;  4XLA A;  4XKV A;  4U4B A;  3B8Y A;  1H80 A;  1K5C A;  4XON A;  1OOC A;  4OJP A;  1OGO X;  2IQ7 A;  2O1D A;  2NT6 A;  1O8F A;  1X0C A;  4MR0 A;  3VSV A;  4XM3 A;  1WMR A;  3LMW A;  1KTW A;  1RWR A;  1PLU A;  4YZX A;  1IDJ A;  2X6X A;  1OFM A;  3KRG A;  4XLH A;  3GQA A;  4MXN A;  2NTP A;  2ODL A;  3FY3 A;  4YZA A;  1KCC A;  4XOT A;  2BSP A;  4NK8 A;  4XL9 A;  4I84 A;  4XLC A;  4HWV A;  4XN0 A;  4Z06 A;  2NZM A;  1JRG A;  2UVE A;  3GRH A;  4XQF A;  1O8I A;  4OZZ A;  2VJI A;  3VSU A;  2QY1 A;  4OJO A;  4U49 A;  4YZQ A;  5C1C A;  4Z03 A;  2NT9 A;  2NTQ A;  1QJV A;  2X85 A;  1CZF A;  1O8G A;  3EQN A;  1JTA A;  1OFL A;  5AMV A;  2INV A;  1DBG A;  4OJ6 A;  4YEL A;  1NHC A;  4XLE A;  4OJL A;  4AVZ A;  1PE9 A;  2Z8G A;  3EQO A;  1EE6 A;  4OJ5 A;  2O04 A;  2QXZ A;  2VBE A;  2O0V A;  3VST A;  3ZSC A;  4XNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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