1DBOA

Crystal structure of chondroitinase b
Total Genus 179
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
481
structure length
481
Chain Sequence
QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
molecule tags Lyase
total genus 179
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dboA00
2X6WA 1IDJA 3VSTA 1KCDA 2VJJA 3VSVA 2NTQA 3KRGA 4XMYA 1IDKA 1O8HA 2NZMA 4YZAA 1OGOX 4XORA 1JRGA 1RU4A 2O17A 4XNFA 4XQFA 1O88A 4C2LA 4W8TA 1PE9A 1VBLA 4Z05A 2O0VA 1OOCA 4PMHA 4XKVA 1IA5A 4W8SA 2NTPA 3B4NA 3B90A 4XOTA 1X0CA 2QXZA 4XLCA 1O8FA 1JTAA 2QY1A 4EW9A 1BN8A 1BHEA 1PXZA 4XLEA 3VMVA 5C1EA 3FY3A 4XN0A 2EWEA 3VMWA 3SUCA 4OJOA 2NSPA 2X6XA 4MR0A 1XG2A 2INVA 3GQ7A 4Z03A 4XKWA 1K5CA 4XOPA 2BSPA 1QJVA 5C1CA 4YZ0A 2PYGA 2O1DA 2VBMA 1RMGA 3GQ9A 1O8IA 1O8KA 4XM3A 1O8LA 1GQ8A 1O8MA 4XN3A 2Z8GA 3GRHA 3ZSCA 1OFMA 3GQ8A 4YZXA 3ZPPA 1HG8A 2NT9A 1KTWA 4NK6A 1CZFA 2O04A 4U4BA 4Z06A 2NTBA 1O8EA 4NK8A 1PLUA 1O8JA 3EQOA 3WWGA 2X85A 1NHCA 4YELA 3GQAA 2VBKA 1DBGA 4W8RA 3LMWA 4YZQA 1IB4A 1OFLA 1OGMX 4XLAA 4XLFA 3JURA 1DBOA 2NT6A 2VJIA 3T9GA 4AVZA 3VSUA 3UW0A 2QX3A 2PYHA 4XLHA 5AMVA 3B8YA 4U49A 1EE6A 2X3HA 2INUA 2X6YA 4I84A 1O8GA 4OZZA 4OJLA 4OJ6A 2UVFA 4MXNA 4XL9A 1H80A 2NSTA 1RWRA 4W8QA 1AIRA 2VBEA 4OJPA 3EQNA 4XR6A 4XONA 4YEJA 2IQ7A 2O0WA 2ODLA 4OJ5A 1KCCA 2UVEA 1O8DA 1WMRA 4URRA 4HWVA 2PECA 1QCXA 4OZYA
chains in the Genus database with same CATH superfamily
1QA3A 2X6WA 3H09A 1IDJA 2VFNA 3VSTA 1TYXA 2VJJA 1QQ1A 1KCDA 3VSVA 4OM9A 2NTQA 3KRGA 4XMYA 1IDKA 3LYCA 1TYUA 3N6ZA 4YFOA 1O8HA 2B0RA 2NZMA 4YZAA 1OGOX 4XORA 4YEIA 1JRGA 1RU4A 2O17A 1QA1A 4XNFA 4XQFA 1KQ5A 1O88A 4C2LA 4W8TA 2XT2A 3SYJA 2BX6A 2BM6A 2IOUG 1PE9A 1VBLA 4Z05A 2O0VA 3BH7B 1OOCA 2VFMA 4PMHA 4XKVA 1IA5A 4W8SA 1WXRA 3NAWA 2NTPA 2J8KA 3SZEA 3B4NA 3B90A 4XOTA 1X0CA 2QXZA 4XLCA 1O8FA 1JTAA 2QY1A 4EW9A 1BN8A 1BHEA 1PXZA 3TH0A 1TYWA 4XLEA 3VMVA 5C1EA 2VFQA 3FY3A 1EZGA 2EWEA 4XN0A 3VMWA 3SUCA 4OJOA 2QZAA 2G0YA 2NSPA 2X6XA 3LJYA 4MR0A 1XG2A 1OFEA 2INVA 3GQ7A 2XT4A 2QYUA 2J8IA 4Z03A 4XKWA 1QRBA 1K5CA 3NB2A 4XOPA 2BSPA 1QJVA 5C1CA 4YZ0A 1LLWA 3PETA 1K4ZA 1K8FA 2PYGA 2O1DA 2VBMA 1RMGA 3GQ9A 1O8IA 1O8KA 1OFDA 4OPWA 2YUHA 4XM3A 3ML3A 1O8LA 1GQ8A 1O8MA 3PSZA 4XN3A 2Z8GA 3GRHA 4YDTA 3ZSCA 1OFMA 3GQ8A 2VFPA 4YZXA 2XTXA 1HG8A 3ZPPA 2NT9A 1KTWA 4NK6A 1L1IA 5JMCB 2O6WA 3JX8A 3RIQA 2BM5A 1CZFA 2O04A 1HF2A 4U4BA 4Z06A 2F3LA 2NTBA 1O8EA 4NK8A 1PLUA 1O8JA 3EQOA 1LLZA 3AK5A 1EA0A 3WWGA 2X85A 4OJ6A 1QA2A 3N90A 1NHCA 4YELA 3GQAA 2VBKA 1DBGA 4W8RA 3LMWA 4YZQA 1IB4A 1QRCA 1OFLA 1OGMX 4XLAA 4XLFA 2W7ZA 3JURA 1DBOA 4V02C 2NT6A 4YC5A 5DNSA 2VJIA 3T9GA 4AVZA 3VSUA 3UW0A 1TYVA 2BM4A 2BM7A 2PYHA 2QX3A 1LM1A 4XLHA 5AMVA 1CLWA 3B8YA 4U49A 1EE6A 2X3HA 2INUA 2X6YA 3DU1X 1O8GA 3PSSA 4I84A 4OZZA 2UVFA 4OJLA 4MXNA 4XL9A 1H80A 3SY2A 2XTYA 2NSTA 1RWRA 4W8QA 1AIRA 2VBEA 3P4GA 4OJPA 1DABA 3SQVA 2VFOA 3EQNA 4XR6A 4XONA 4YCQA 2IQ7A 2O0WA 2ODLA 4KH3A 4OJ5A 4YEJA 1KCCA 2UVEA 1O8DA 1TSPA 2V5IA 2XC1A 1WMRA 4JRAC 2XTWA 4URRA 4HWVA 2PECA 5JLVC 1QCXA 3BH6B 4OZYA
chains in the Genus database with same CATH topology
2X6WA 1IDJA 3VSTA 1KCDA 2VJJA 3VSVA 2NTQA 3KRGA 4XMYA 1IDKA 1O8HA 2NZMA 4YZAA 1OGOX 4XORA 1JRGA 1RU4A 2O17A 4XNFA 4XQFA 1O88A 4C2LA 4W8TA 1PE9A 1VBLA 4Z05A 2O0VA 1OOCA 4PMHA 4XKVA 1IA5A 4W8SA 2NTPA 3B4NA 3B90A 4XOTA 1X0CA 2QXZA 4XLCA 1O8FA 1JTAA 2QY1A 4EW9A 1BN8A 1BHEA 1PXZA 4XLEA 3VMVA 5C1EA 3FY3A 4XN0A 2EWEA 3VMWA 3SUCA 4OJOA 2NSPA 2X6XA 4MR0A 1XG2A 2INVA 3GQ7A 4Z03A 4XKWA 1K5CA 4XOPA 2BSPA 1QJVA 5C1CA 4YZ0A 2PYGA 2O1DA 2VBMA 1RMGA 3GQ9A 1O8IA 1O8KA 4XM3A 1O8LA 1GQ8A 1O8MA 4XN3A 2Z8GA 3GRHA 3ZSCA 1OFMA 3GQ8A 4YZXA 3ZPPA 1HG8A 2NT9A 1KTWA 4NK6A 1CZFA 2O04A 4U4BA 4Z06A 2NTBA 1O8EA 4NK8A 1PLUA 1O8JA 3EQOA 3WWGA 2X85A 1NHCA 4YELA 3GQAA 2VBKA 1DBGA 4W8RA 3LMWA 4YZQA 1IB4A 1OFLA 1OGMX 4XLAA 4XLFA 3JURA 1DBOA 2NT6A 2VJIA 3T9GA 4AVZA 3VSUA 3UW0A 2QX3A 2PYHA 4XLHA 5AMVA 3B8YA 4U49A 1EE6A 2X3HA 2INUA 2X6YA 4I84A 1O8GA 4OZZA 4OJLA 4OJ6A 2UVFA 4MXNA 4XL9A 1H80A 2NSTA 1RWRA 4W8QA 1AIRA 2VBEA 4OJPA 3EQNA 4XR6A 4XONA 4YEJA 2IQ7A 2O0WA 2ODLA 4OJ5A 1KCCA 2UVEA 1O8DA 1WMRA 4URRA 4HWVA 2PECA 1QCXA 4OZYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X6W A;  1IDJ A;  3VST A;  1KCD A;  2VJJ A;  3VSV A;  2NTQ A;  3KRG A;  4XMY A;  1IDK A;  1O8H A;  2NZM A;  4YZA A;  1OGO X;  4XOR A;  1JRG A;  1RU4 A;  2O17 A;  4XNF A;  4XQF A;  1O88 A;  4C2L A;  4W8T A;  1PE9 A;  1VBL A;  4Z05 A;  2O0V A;  1OOC A;  4PMH A;  4XKV A;  1IA5 A;  4W8S A;  2NTP A;  3B4N A;  3B90 A;  4XOT A;  1X0C A;  2QXZ A;  4XLC A;  1O8F A;  1JTA A;  2QY1 A;  4EW9 A;  1BN8 A;  1BHE A;  1PXZ A;  4XLE A;  3VMV A;  5C1E A;  3FY3 A;  4XN0 A;  2EWE A;  3VMW A;  3SUC A;  4OJO A;  2NSP A;  2X6X A;  4MR0 A;  1XG2 A;  2INV A;  3GQ7 A;  4Z03 A;  4XKW A;  1K5C A;  4XOP A;  2BSP A;  1QJV A;  5C1C A;  4YZ0 A;  2PYG A;  2O1D A;  2VBM A;  1RMG A;  3GQ9 A;  1O8I A;  1O8K A;  4XM3 A;  1O8L A;  1GQ8 A;  1O8M A;  4XN3 A;  2Z8G A;  3GRH A;  3ZSC A;  1OFM A;  3GQ8 A;  4YZX A;  3ZPP A;  1HG8 A;  2NT9 A;  1KTW A;  4NK6 A;  1CZF A;  2O04 A;  4U4B A;  4Z06 A;  2NTB A;  1O8E A;  4NK8 A;  1PLU A;  1O8J A;  3EQO A;  3WWG A;  2X85 A;  1NHC A;  4YEL A;  3GQA A;  2VBK A;  1DBG A;  4W8R A;  3LMW A;  4YZQ A;  1IB4 A;  1OFL A;  1OGM X;  4XLA A;  4XLF A;  3JUR A;  1DBO A;  2NT6 A;  2VJI A;  3T9G A;  4AVZ A;  3VSU A;  3UW0 A;  2QX3 A;  2PYH A;  4XLH A;  5AMV A;  3B8Y A;  4U49 A;  1EE6 A;  2X3H A;  2INU A;  2X6Y A;  4I84 A;  1O8G A;  4OZZ A;  4OJL A;  4OJ6 A;  2UVF A;  4MXN A;  4XL9 A;  1H80 A;  2NST A;  1RWR A;  4W8Q A;  1AIR A;  2VBE A;  4OJP A;  3EQN A;  4XR6 A;  4XON A;  4YEJ A;  2IQ7 A;  2O0W A;  2ODL A;  4OJ5 A;  1KCC A;  2UVE A;  1O8D A;  1WMR A;  4URR A;  4HWV A;  2PEC A;  1QCX A;  4OZY A; 
#chains in the Genus database with same CATH topology
 1QA3 A;  2X6W A;  3H09 A;  1IDJ A;  2VFN A;  3VST A;  1TYX A;  2VJJ A;  1QQ1 A;  1KCD A;  3VSV A;  4OM9 A;  2NTQ A;  3KRG A;  4XMY A;  1IDK A;  3LYC A;  1TYU A;  3N6Z A;  4YFO A;  1O8H A;  2B0R A;  2NZM A;  4YZA A;  1OGO X;  4XOR A;  4YEI A;  1JRG A;  1RU4 A;  2O17 A;  1QA1 A;  4XNF A;  4XQF A;  1KQ5 A;  1O88 A;  4C2L A;  4W8T A;  2XT2 A;  3SYJ A;  2BX6 A;  2BM6 A;  2IOU G;  1PE9 A;  1VBL A;  4Z05 A;  2O0V A;  3BH7 B;  1OOC A;  2VFM A;  4PMH A;  4XKV A;  1IA5 A;  4W8S A;  1WXR A;  3NAW A;  2NTP A;  2J8K A;  3SZE A;  3B4N A;  3B90 A;  4XOT A;  1X0C A;  2QXZ A;  4XLC A;  1O8F A;  1JTA A;  2QY1 A;  4EW9 A;  1BN8 A;  1BHE A;  1PXZ A;  3TH0 A;  1TYW A;  4XLE A;  3VMV A;  5C1E A;  2VFQ A;  3FY3 A;  1EZG A;  2EWE A;  4XN0 A;  3VMW A;  3SUC A;  4OJO A;  2QZA A;  2G0Y A;  2NSP A;  2X6X A;  3LJY A;  4MR0 A;  1XG2 A;  1OFE A;  2INV A;  3GQ7 A;  2XT4 A;  2QYU A;  2J8I A;  4Z03 A;  4XKW A;  1QRB A;  1K5C A;  3NB2 A;  4XOP A;  2BSP A;  1QJV A;  5C1C A;  4YZ0 A;  1LLW A;  3PET A;  1K4Z A;  1K8F A;  2PYG A;  2O1D A;  2VBM A;  1RMG A;  3GQ9 A;  1O8I A;  1O8K A;  1OFD A;  4OPW A;  2YUH A;  4XM3 A;  3ML3 A;  1O8L A;  1GQ8 A;  1O8M A;  3PSZ A;  4XN3 A;  2Z8G A;  3GRH A;  4YDT A;  3ZSC A;  1OFM A;  3GQ8 A;  2VFP A;  4YZX A;  2XTX A;  1HG8 A;  3ZPP A;  2NT9 A;  1KTW A;  4NK6 A;  1L1I A;  5JMC B;  2O6W A;  3JX8 A;  3RIQ A;  2BM5 A;  1CZF A;  2O04 A;  1HF2 A;  4U4B A;  4Z06 A;  2F3L A;  2NTB A;  1O8E A;  4NK8 A;  1PLU A;  1O8J A;  3EQO A;  1LLZ A;  3AK5 A;  1EA0 A;  3WWG A;  2X85 A;  4OJ6 A;  1QA2 A;  3N90 A;  1NHC A;  4YEL A;  3GQA A;  2VBK A;  1DBG A;  4W8R A;  3LMW A;  4YZQ A;  1IB4 A;  1QRC A;  1OFL A;  1OGM X;  4XLA A;  4XLF A;  2W7Z A;  3JUR A;  1DBO A;  4V02 C;  2NT6 A;  4YC5 A;  5DNS A;  2VJI A;  3T9G A;  4AVZ A;  3VSU A;  3UW0 A;  1TYV A;  2BM4 A;  2BM7 A;  2PYH A;  2QX3 A;  1LM1 A;  4XLH A;  5AMV A;  1CLW A;  3B8Y A;  4U49 A;  1EE6 A;  2X3H A;  2INU A;  2X6Y A;  3DU1 X;  1O8G A;  3PSS A;  4I84 A;  4OZZ A;  2UVF A;  4OJL A;  4MXN A;  4XL9 A;  1H80 A;  3SY2 A;  2XTY A;  2NST A;  1RWR A;  4W8Q A;  1AIR A;  2VBE A;  3P4G A;  4OJP A;  1DAB A;  3SQV A;  2VFO A;  3EQN A;  4XR6 A;  4XON A;  4YCQ A;  2IQ7 A;  2O0W A;  2ODL A;  4KH3 A;  4OJ5 A;  4YEJ A;  1KCC A;  2UVE A;  1O8D A;  1TSP A;  2V5I A;  2XC1 A;  1WMR A;  4JRA C;  2XTW A;  4URR A;  4HWV A;  2PEC A;  5JLV C;  1QCX A;  3BH6 B;  4OZY A; 
#chains in the Genus database with same CATH homology
 2X6W A;  1IDJ A;  3VST A;  1KCD A;  2VJJ A;  3VSV A;  2NTQ A;  3KRG A;  4XMY A;  1IDK A;  1O8H A;  2NZM A;  4YZA A;  1OGO X;  4XOR A;  1JRG A;  1RU4 A;  2O17 A;  4XNF A;  4XQF A;  1O88 A;  4C2L A;  4W8T A;  1PE9 A;  1VBL A;  4Z05 A;  2O0V A;  1OOC A;  4PMH A;  4XKV A;  1IA5 A;  4W8S A;  2NTP A;  3B4N A;  3B90 A;  4XOT A;  1X0C A;  2QXZ A;  4XLC A;  1O8F A;  1JTA A;  2QY1 A;  4EW9 A;  1BN8 A;  1BHE A;  1PXZ A;  4XLE A;  3VMV A;  5C1E A;  3FY3 A;  4XN0 A;  2EWE A;  3VMW A;  3SUC A;  4OJO A;  2NSP A;  2X6X A;  4MR0 A;  1XG2 A;  2INV A;  3GQ7 A;  4Z03 A;  4XKW A;  1K5C A;  4XOP A;  2BSP A;  1QJV A;  5C1C A;  4YZ0 A;  2PYG A;  2O1D A;  2VBM A;  1RMG A;  3GQ9 A;  1O8I A;  1O8K A;  4XM3 A;  1O8L A;  1GQ8 A;  1O8M A;  4XN3 A;  2Z8G A;  3GRH A;  3ZSC A;  1OFM A;  3GQ8 A;  4YZX A;  3ZPP A;  1HG8 A;  2NT9 A;  1KTW A;  4NK6 A;  1CZF A;  2O04 A;  4U4B A;  4Z06 A;  2NTB A;  1O8E A;  4NK8 A;  1PLU A;  1O8J A;  3EQO A;  3WWG A;  2X85 A;  1NHC A;  4YEL A;  3GQA A;  2VBK A;  1DBG A;  4W8R A;  3LMW A;  4YZQ A;  1IB4 A;  1OFL A;  1OGM X;  4XLA A;  4XLF A;  3JUR A;  1DBO A;  2NT6 A;  2VJI A;  3T9G A;  4AVZ A;  3VSU A;  3UW0 A;  2QX3 A;  2PYH A;  4XLH A;  5AMV A;  3B8Y A;  4U49 A;  1EE6 A;  2X3H A;  2INU A;  2X6Y A;  4I84 A;  1O8G A;  4OZZ A;  4OJL A;  4OJ6 A;  2UVF A;  4MXN A;  4XL9 A;  1H80 A;  2NST A;  1RWR A;  4W8Q A;  1AIR A;  2VBE A;  4OJP A;  3EQN A;  4XR6 A;  4XON A;  4YEJ A;  2IQ7 A;  2O0W A;  2ODL A;  4OJ5 A;  1KCC A;  2UVE A;  1O8D A;  1WMR A;  4URR A;  4HWV A;  2PEC A;  1QCX A;  4OZY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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