4EW9A

The liganded structure of c. bescii family 3 pectate lyase
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
195
structure length
195
Chain Sequence
GTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAADKVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Caldicellulosiruptor bescii
publication title The structure and mode of action of Caldicellulosiruptor bescii family 3 pectate lyase in biomass deconstruction.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 79
structure length 195
sequence length 195
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2012-04-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4ew9A00
2O17A 1RWRA 3LMWA 2UVEA 3GQ7A 1JTAA 3JURA 1O8FA 1CZFA 1IA5A 1O8IA 4OJ5A 2NZMA 2X6XA 1OFMA 2QY1A 4XN3A 1O8MA 2PYGA 4XKWA 4XOTA 4XQFA 1O8GA 1PLUA 2O0WA 4XMYA 2X85A 4W8RA 2NTQA 2UVFA 1O8DA 4EW9A 3GQ9A 1EE6A 3VSTA 2O0VA 3KRGA 1OFLA 5AMVA 1IB4A 3SUCA 1BHEA 3EQOA 3B4NA 3FY3A 4Z06A 2O04A 1DBOA 2ODLA 1BN8A 2VJJA 4C2LA 3GRHA 4OZZA 3EQNA 2INVA 4URRA 1QJVA 2NT9A 4PMHA 4Z05A 1K5CA 3B90A 4XNFA 1OGOX 3GQ8A 4Z03A 1KCDA 1IDJA 4XN0A 3ZPPA 1JRGA 4MR0A 1PXZA 1O88A 4NK8A 4YEJA 1OGMX 4XLAA 5C1CA 1KTWA 1QCXA 1O8JA 2INUA 1O8LA 4XLCA 3VSVA 4YZQA 3ZSCA 4W8QA 2O1DA 4XR6A 4XM3A 4MXNA 1GQ8A 2VBKA 2QX3A 2X6YA 2IQ7A 1RU4A 3WWGA 1H80A 1VBLA 1HG8A 3GQAA 4U49A 1IDKA 2PECA 4AVZA 4XL9A 1O8EA 4XOPA 4OJPA 2VJIA 4XONA 4XORA 2NSPA 5C1EA 2X6WA 2Z8GA 4XLHA 1WMRA 4YZXA 4OJ6A 4NK6A 4W8TA 4W8SA 4U4BA 3VMWA 4XLEA 2BSPA 2QXZA 2NSTA 4OZYA 2EWEA 4HWVA 1AIRA 3VMVA 4OJOA 4YELA 3UW0A 4XKVA 2VBMA 4OJLA 3VSUA 4YZ0A 1NHCA 1RMGA 2NT6A 1O8KA 2X3HA 4I84A 2NTPA 4YZAA 1PE9A 1O8HA 1OOCA 3T9GA 4XLFA 1KCCA 1X0CA 1DBGA 3B8YA 1XG2A 2PYHA 2VBEA 2NTBA
chains in the Genus database with same CATH superfamily
2O17A 1RWRA 3JX8A 3LMWA 2UVEA 2VFNA 3DU1X 1JTAA 3GQ7A 2QZAA 3JURA 2BM6A 1O8FA 2W7ZA 1CZFA 2XT2A 1QRCA 1TYXA 1O8IA 2BM4A 4OJ5A 2NZMA 1IA5A 2X6XA 1OFMA 2QY1A 2VFMA 1HF2A 2BM7A 2NTBA 1O8MA 2PYGA 4XKWA 4XN3A 4XOTA 4XQFA 2BM5A 1O8GA 1PLUA 4OPWA 1TYVA 2O0WA 1KQ5A 3LJYA 4XMYA 3P4GA 2X85A 4W8RA 2NTQA 2UVFA 1O8DA 4EW9A 2XTWA 3GQ9A 1EE6A 2B0RA 2XTYA 3VSTA 2O0VA 3KRGA 3BH6B 1OFLA 2QYUA 5AMVA 3N90A 1IB4A 3SUCA 1BHEA 3EQOA 3B4NA 3FY3A 4Z06A 2O04A 1QA1A 1DBOA 2ODLA 1BN8A 1QRBA 2IOUG 2VJJA 2F3LA 4C2LA 3GRHA 4OZZA 3EQNA 2INVA 4URRA 2VFOA 1QJVA 2NT9A 4PMHA 4YFOA 3SY2A 1CLWA 3PSZA 4Z05A 1EZGA 3SZEA 1K5CA 2BX6A 3B90A 4XNFA 1OGOX 4YDTA 3GQ8A 4Z03A 1TSPA 2J8KA 1QQ1A 1DABA 2VFPA 2XT4A 1IDJA 4XN0A 3ZPPA 1KCDA 2V5IA 2XC1A 1JRGA 1QA3A 4MR0A 3LYCA 1PXZA 1WXRA 5JMCB 1O88A 2J8IA 4NK8A 2G0YA 1K8FA 4YEJA 1OGMX 4XLAA 3NAWA 5C1CA 1KTWA 2VFQA 1QCXA 1O8JA 2INUA 4YEIA 1O8LA 1TYWA 4XLCA 3VSVA 1L1IA 1QA2A 1OFDA 4OM9A 4YZQA 3ZSCA 1LLWA 4W8QA 3PSSA 2O1DA 4XR6A 4XM3A 4MXNA 1GQ8A 2VBKA 2QX3A 2X6YA 2IQ7A 3ML3A 1RU4A 3WWGA 3AK5A 1H80A 1VBLA 1HG8A 3GQAA 4U49A 1IDKA 3RIQA 3NB2A 2PECA 4AVZA 1LLZA 1O8EA 4XL9A 4XOPA 2XTXA 4OJPA 2VJIA 4XONA 4XORA 4YCQA 2NSPA 4YC5A 5C1EA 2X6WA 2Z8GA 4XLHA 1WMRA 3PETA 4YZXA 1LM1A 4OJ6A 4NK6A 3SYJA 4W8TA 3TH0A 5JLVC 4W8SA 4U4BA 3H09A 3VMWA 4XLEA 5DNSA 2BSPA 2QXZA 2NSTA 4OZYA 2EWEA 3BH7B 1AIRA 1TYUA 4HWVA 3VMVA 4OJOA 4YELA 3UW0A 4XKVA 2VBMA 4OJLA 3VSUA 1EA0A 1OFEA 4YZ0A 3N6ZA 1RMGA 2NT6A 3SQVA 1NHCA 1O8KA 2O6WA 2X3HA 2YUHA 4I84A 2NTPA 4YZAA 1PE9A 4JRAC 4V02C 1O8HA 1OOCA 3T9GA 4KH3A 4XLFA 1KCCA 1K4ZA 1X0CA 3B8YA 1XG2A 2PYHA 2VBEA 1DBGA
chains in the Genus database with same CATH topology
2O17A 1RWRA 3LMWA 2UVEA 3GQ7A 1JTAA 3JURA 1O8FA 1CZFA 1IA5A 1O8IA 4OJ5A 2NZMA 2X6XA 1OFMA 2QY1A 4XN3A 1O8MA 2PYGA 4XKWA 4XOTA 4XQFA 1O8GA 1PLUA 2O0WA 4XMYA 2X85A 4W8RA 2NTQA 2UVFA 1O8DA 4EW9A 3GQ9A 1EE6A 3VSTA 2O0VA 3KRGA 1OFLA 5AMVA 1IB4A 3SUCA 1BHEA 3EQOA 3B4NA 3FY3A 4Z06A 2O04A 1DBOA 2ODLA 1BN8A 2VJJA 4C2LA 3GRHA 4OZZA 3EQNA 2INVA 4URRA 1QJVA 2NT9A 4PMHA 4Z05A 1K5CA 3B90A 4XNFA 1OGOX 3GQ8A 4Z03A 1KCDA 1IDJA 4XN0A 3ZPPA 1JRGA 4MR0A 1PXZA 1O88A 4NK8A 4YEJA 1OGMX 4XLAA 5C1CA 1KTWA 1QCXA 1O8JA 2INUA 1O8LA 4XLCA 3VSVA 4YZQA 3ZSCA 4W8QA 2O1DA 4XR6A 4XM3A 4MXNA 1GQ8A 2VBKA 2QX3A 2X6YA 2IQ7A 1RU4A 3WWGA 1H80A 1VBLA 1HG8A 3GQAA 4U49A 1IDKA 2PECA 4AVZA 4XL9A 1O8EA 4XOPA 4OJPA 2VJIA 4XONA 4XORA 2NSPA 5C1EA 2X6WA 2Z8GA 4XLHA 1WMRA 4YZXA 4OJ6A 4NK6A 4W8TA 4W8SA 4U4BA 3VMWA 4XLEA 2BSPA 2QXZA 2NSTA 4OZYA 2EWEA 4HWVA 1AIRA 3VMVA 4OJOA 4YELA 3UW0A 4XKVA 2VBMA 4OJLA 3VSUA 4YZ0A 1NHCA 1RMGA 2NT6A 1O8KA 2X3HA 4I84A 2NTPA 4YZAA 1PE9A 1O8HA 1OOCA 3T9GA 4XLFA 1KCCA 1X0CA 1DBGA 3B8YA 1XG2A 2PYHA 2VBEA 2NTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O17 A;  1RWR A;  3LMW A;  2UVE A;  3GQ7 A;  1JTA A;  3JUR A;  1O8F A;  1CZF A;  1IA5 A;  1O8I A;  4OJ5 A;  2NZM A;  2X6X A;  1OFM A;  2QY1 A;  4XN3 A;  1O8M A;  2PYG A;  4XKW A;  4XOT A;  4XQF A;  1O8G A;  1PLU A;  2O0W A;  4XMY A;  2X85 A;  4W8R A;  2NTQ A;  2UVF A;  1O8D A;  4EW9 A;  3GQ9 A;  1EE6 A;  3VST A;  2O0V A;  3KRG A;  1OFL A;  5AMV A;  1IB4 A;  3SUC A;  1BHE A;  3EQO A;  3B4N A;  3FY3 A;  4Z06 A;  2O04 A;  1DBO A;  2ODL A;  1BN8 A;  2VJJ A;  4C2L A;  3GRH A;  4OZZ A;  3EQN A;  2INV A;  4URR A;  1QJV A;  2NT9 A;  4PMH A;  4Z05 A;  1K5C A;  3B90 A;  4XNF A;  1OGO X;  3GQ8 A;  4Z03 A;  1KCD A;  1IDJ A;  4XN0 A;  3ZPP A;  1JRG A;  4MR0 A;  1PXZ A;  1O88 A;  4NK8 A;  4YEJ A;  1OGM X;  4XLA A;  5C1C A;  1KTW A;  1QCX A;  1O8J A;  2INU A;  1O8L A;  4XLC A;  3VSV A;  4YZQ A;  3ZSC A;  4W8Q A;  2O1D A;  4XR6 A;  4XM3 A;  4MXN A;  1GQ8 A;  2VBK A;  2QX3 A;  2X6Y A;  2IQ7 A;  1RU4 A;  3WWG A;  1H80 A;  1VBL A;  1HG8 A;  3GQA A;  4U49 A;  1IDK A;  2PEC A;  4AVZ A;  4XL9 A;  1O8E A;  4XOP A;  4OJP A;  2VJI A;  4XON A;  4XOR A;  2NSP A;  5C1E A;  2X6W A;  2Z8G A;  4XLH A;  1WMR A;  4YZX A;  4OJ6 A;  4NK6 A;  4W8T A;  4W8S A;  4U4B A;  3VMW A;  4XLE A;  2BSP A;  2QXZ A;  2NST A;  4OZY A;  2EWE A;  4HWV A;  1AIR A;  3VMV A;  4OJO A;  4YEL A;  3UW0 A;  4XKV A;  2VBM A;  4OJL A;  3VSU A;  4YZ0 A;  1NHC A;  1RMG A;  2NT6 A;  1O8K A;  2X3H A;  4I84 A;  2NTP A;  4YZA A;  1PE9 A;  1O8H A;  1OOC A;  3T9G A;  4XLF A;  1KCC A;  1X0C A;  1DBG A;  3B8Y A;  1XG2 A;  2PYH A;  2VBE A;  2NTB A; 
#chains in the Genus database with same CATH topology
 2O17 A;  1RWR A;  3JX8 A;  3LMW A;  2UVE A;  2VFN A;  3DU1 X;  1JTA A;  3GQ7 A;  2QZA A;  3JUR A;  2BM6 A;  1O8F A;  2W7Z A;  1CZF A;  2XT2 A;  1QRC A;  1TYX A;  1O8I A;  2BM4 A;  4OJ5 A;  2NZM A;  1IA5 A;  2X6X A;  1OFM A;  2QY1 A;  2VFM A;  1HF2 A;  2BM7 A;  2NTB A;  1O8M A;  2PYG A;  4XKW A;  4XN3 A;  4XOT A;  4XQF A;  2BM5 A;  1O8G A;  1PLU A;  4OPW A;  1TYV A;  2O0W A;  1KQ5 A;  3LJY A;  4XMY A;  3P4G A;  2X85 A;  4W8R A;  2NTQ A;  2UVF A;  1O8D A;  4EW9 A;  2XTW A;  3GQ9 A;  1EE6 A;  2B0R A;  2XTY A;  3VST A;  2O0V A;  3KRG A;  3BH6 B;  1OFL A;  2QYU A;  5AMV A;  3N90 A;  1IB4 A;  3SUC A;  1BHE A;  3EQO A;  3B4N A;  3FY3 A;  4Z06 A;  2O04 A;  1QA1 A;  1DBO A;  2ODL A;  1BN8 A;  1QRB A;  2IOU G;  2VJJ A;  2F3L A;  4C2L A;  3GRH A;  4OZZ A;  3EQN A;  2INV A;  4URR A;  2VFO A;  1QJV A;  2NT9 A;  4PMH A;  4YFO A;  3SY2 A;  1CLW A;  3PSZ A;  4Z05 A;  1EZG A;  3SZE A;  1K5C A;  2BX6 A;  3B90 A;  4XNF A;  1OGO X;  4YDT A;  3GQ8 A;  4Z03 A;  1TSP A;  2J8K A;  1QQ1 A;  1DAB A;  2VFP A;  2XT4 A;  1IDJ A;  4XN0 A;  3ZPP A;  1KCD A;  2V5I A;  2XC1 A;  1JRG A;  1QA3 A;  4MR0 A;  3LYC A;  1PXZ A;  1WXR A;  5JMC B;  1O88 A;  2J8I A;  4NK8 A;  2G0Y A;  1K8F A;  4YEJ A;  1OGM X;  4XLA A;  3NAW A;  5C1C A;  1KTW A;  2VFQ A;  1QCX A;  1O8J A;  2INU A;  4YEI A;  1O8L A;  1TYW A;  4XLC A;  3VSV A;  1L1I A;  1QA2 A;  1OFD A;  4OM9 A;  4YZQ A;  3ZSC A;  1LLW A;  4W8Q A;  3PSS A;  2O1D A;  4XR6 A;  4XM3 A;  4MXN A;  1GQ8 A;  2VBK A;  2QX3 A;  2X6Y A;  2IQ7 A;  3ML3 A;  1RU4 A;  3WWG A;  3AK5 A;  1H80 A;  1VBL A;  1HG8 A;  3GQA A;  4U49 A;  1IDK A;  3RIQ A;  3NB2 A;  2PEC A;  4AVZ A;  1LLZ A;  1O8E A;  4XL9 A;  4XOP A;  2XTX A;  4OJP A;  2VJI A;  4XON A;  4XOR A;  4YCQ A;  2NSP A;  4YC5 A;  5C1E A;  2X6W A;  2Z8G A;  4XLH A;  1WMR A;  3PET A;  4YZX A;  1LM1 A;  4OJ6 A;  4NK6 A;  3SYJ A;  4W8T A;  3TH0 A;  5JLV C;  4W8S A;  4U4B A;  3H09 A;  3VMW A;  4XLE A;  5DNS A;  2BSP A;  2QXZ A;  2NST A;  4OZY A;  2EWE A;  3BH7 B;  1AIR A;  1TYU A;  4HWV A;  3VMV A;  4OJO A;  4YEL A;  3UW0 A;  4XKV A;  2VBM A;  4OJL A;  3VSU A;  1EA0 A;  1OFE A;  4YZ0 A;  3N6Z A;  1RMG A;  2NT6 A;  3SQV A;  1NHC A;  1O8K A;  2O6W A;  2X3H A;  2YUH A;  4I84 A;  2NTP A;  4YZA A;  1PE9 A;  4JRA C;  4V02 C;  1O8H A;  1OOC A;  3T9G A;  4KH3 A;  4XLF A;  1KCC A;  1K4Z A;  1X0C A;  3B8Y A;  1XG2 A;  2PYH A;  2VBE A;  1DBG A; 
#chains in the Genus database with same CATH homology
 2O17 A;  1RWR A;  3LMW A;  2UVE A;  3GQ7 A;  1JTA A;  3JUR A;  1O8F A;  1CZF A;  1IA5 A;  1O8I A;  4OJ5 A;  2NZM A;  2X6X A;  1OFM A;  2QY1 A;  4XN3 A;  1O8M A;  2PYG A;  4XKW A;  4XOT A;  4XQF A;  1O8G A;  1PLU A;  2O0W A;  4XMY A;  2X85 A;  4W8R A;  2NTQ A;  2UVF A;  1O8D A;  4EW9 A;  3GQ9 A;  1EE6 A;  3VST A;  2O0V A;  3KRG A;  1OFL A;  5AMV A;  1IB4 A;  3SUC A;  1BHE A;  3EQO A;  3B4N A;  3FY3 A;  4Z06 A;  2O04 A;  1DBO A;  2ODL A;  1BN8 A;  2VJJ A;  4C2L A;  3GRH A;  4OZZ A;  3EQN A;  2INV A;  4URR A;  1QJV A;  2NT9 A;  4PMH A;  4Z05 A;  1K5C A;  3B90 A;  4XNF A;  1OGO X;  3GQ8 A;  4Z03 A;  1KCD A;  1IDJ A;  4XN0 A;  3ZPP A;  1JRG A;  4MR0 A;  1PXZ A;  1O88 A;  4NK8 A;  4YEJ A;  1OGM X;  4XLA A;  5C1C A;  1KTW A;  1QCX A;  1O8J A;  2INU A;  1O8L A;  4XLC A;  3VSV A;  4YZQ A;  3ZSC A;  4W8Q A;  2O1D A;  4XR6 A;  4XM3 A;  4MXN A;  1GQ8 A;  2VBK A;  2QX3 A;  2X6Y A;  2IQ7 A;  1RU4 A;  3WWG A;  1H80 A;  1VBL A;  1HG8 A;  3GQA A;  4U49 A;  1IDK A;  2PEC A;  4AVZ A;  4XL9 A;  1O8E A;  4XOP A;  4OJP A;  2VJI A;  4XON A;  4XOR A;  2NSP A;  5C1E A;  2X6W A;  2Z8G A;  4XLH A;  1WMR A;  4YZX A;  4OJ6 A;  4NK6 A;  4W8T A;  4W8S A;  4U4B A;  3VMW A;  4XLE A;  2BSP A;  2QXZ A;  2NST A;  4OZY A;  2EWE A;  4HWV A;  1AIR A;  3VMV A;  4OJO A;  4YEL A;  3UW0 A;  4XKV A;  2VBM A;  4OJL A;  3VSU A;  4YZ0 A;  1NHC A;  1RMG A;  2NT6 A;  1O8K A;  2X3H A;  4I84 A;  2NTP A;  4YZA A;  1PE9 A;  1O8H A;  1OOC A;  3T9G A;  4XLF A;  1KCC A;  1X0C A;  1DBG A;  3B8Y A;  1XG2 A;  2PYH A;  2VBE A;  2NTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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