1IDKA

Pectin lyase a
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
359
structure length
359
Chain Sequence
VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGTFSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
publication title Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases.
pubmed doi rcsb
molecule keywords PECTIN LYASE A
total genus 131
structure length 359
sequence length 359
ec nomenclature ec 4.2.2.10: Pectin lyase.
pdb deposition date 1996-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1idkA00
4XNFA 2PYGA 2Z8GA 1O8HA 2IQ7A 3VSVA 3WWGA 1JTAA 4OJOA 4OJ6A 1OGMX 1O8IA 4OJPA 2O04A 3VMWA 1RWRA 1NHCA 4YEJA 4I84A 1BHEA 1OGOX 1O8EA 1VBLA 1IDJA 1DBGA 1OOCA 2INUA 3B90A 3EQOA 1QCXA 4XKWA 5AMVA 2O17A 2NT6A 4XLAA 1O8FA 1O8LA 3LMWA 3JURA 4XOPA 4AVZA 1KCCA 1IA5A 4XL9A 4XONA 1PXZA 4XN3A 2EWEA 1QJVA 4XLFA 4XQFA 2NSTA 1K5CA 3EQNA 2O0VA 1DBOA 2X6YA 3ZSCA 3FY3A 1BN8A 1KTWA 2X3HA 1EE6A 1O88A 4XLHA 4NK6A 5C1EA 2O1DA 4PMHA 4MR0A 1RU4A 2BSPA 4XOTA 2VJJA 1O8DA 4OJLA 4XORA 4Z03A 3VSUA 4XM3A 1RMGA 2PECA 1OFMA 2NTPA 3SUCA 4XN0A 1OFLA 3GQ9A 2UVFA 2X6WA 1KCDA 3ZPPA 3VSTA 2QXZA 1O8GA 2NT9A 1AIRA 1O8MA 1HG8A 1X0CA 1WMRA 4XR6A 4MXNA 1PE9A 4W8SA 3T9GA 4YZQA 3B4NA 4YZ0A 4W8QA 1CZFA 4C2LA 4U49A 2UVEA 1O8JA 2NTBA 3GQAA 2NSPA 3GQ8A 4OZYA 2INVA 4XLEA 3GRHA 4XLCA 4OJ5A 1O8KA 2NZMA 4XMYA 4YZAA 2VBMA 4Z05A 2ODLA 4OZZA 1XG2A 2O0WA 1H80A 4Z06A 5C1CA 4XKVA 2VBKA 2QX3A 2VBEA 2X6XA 1PLUA 4EW9A 2X85A 1IDKA 2QY1A 4HWVA 4YELA 3VMVA 3GQ7A 3UW0A 2VJIA 4URRA 4W8TA 1IB4A 3B8YA 4U4BA 4NK8A 4W8RA 1GQ8A 3KRGA 4YZXA 2NTQA 1JRGA 2PYHA
chains in the Genus database with same CATH superfamily
4XNFA 3JX8A 2XT2A 2PYGA 4YC5A 3LYCA 1K8FA 3RIQA 2Z8GA 1O8HA 1EZGA 2IQ7A 2BM7A 2J8KA 3VSVA 3WWGA 4OPWA 1JTAA 4OJOA 4OJ6A 3PETA 1OGMX 1LM1A 1O8IA 4OJPA 2O04A 3VMWA 1RWRA 2BX6A 2YUHA 1NHCA 4YEJA 4I84A 1BHEA 1OGOX 1O8EA 1VBLA 1IDJA 3LJYA 1DBGA 2XTWA 4YCQA 1OOCA 2INUA 3B90A 3EQOA 1QCXA 3NAWA 4XKWA 5AMVA 2O17A 2NT6A 1HF2A 4XLAA 1O8FA 4YDTA 2IOUG 1QRBA 2BM5A 4JRAC 1CLWA 2XTYA 1O8LA 5DNSA 3AK5A 3LMWA 2BM6A 3JURA 4XOPA 4AVZA 1KCCA 1IA5A 2QYUA 4XL9A 4XONA 1PXZA 4XN3A 2EWEA 1QJVA 4XLFA 4XQFA 2NSTA 4YFOA 1K5CA 3EQNA 2O0VA 3N90A 1DBOA 2X6YA 3ZSCA 2XTXA 2VFQA 2XT4A 3FY3A 1BN8A 1KTWA 2VFMA 1EE6A 1O88A 2VFNA 1TSPA 2X3HA 3BH7B 2QZAA 4NK6A 1K4ZA 5C1EA 2O1DA 3TH0A 4PMHA 1QA3A 4MR0A 1RU4A 2BSPA 2VFOA 4XOTA 5JLVC 2VJJA 1O8DA 1LLWA 4OJLA 4XORA 4Z03A 2V5IA 4XM3A 1RMGA 2PECA 3PSSA 3VSUA 1OFMA 2NTPA 3SUCA 4XN0A 1OFLA 3GQ9A 2UVFA 2X6WA 4KH3A 1KCDA 3ZPPA 3VSTA 1QQ1A 2QXZA 1O8GA 1TYVA 1AIRA 1O8MA 1HG8A 1TYXA 1WMRA 1X0CA 2NT9A 3N6ZA 1OFEA 3DU1X 4XR6A 1QA1A 4MXNA 1PE9A 4W8SA 3T9GA 4YZQA 3B4NA 4YZ0A 4W8QA 1CZFA 4C2LA 4U49A 2UVEA 1QRCA 1O8JA 2NTBA 1DABA 3GQAA 2NSPA 3GQ8A 4V02C 4OZYA 5JMCB 4XLHA 2INVA 4XLEA 3SQVA 4YEIA 3GRHA 3H09A 4OJ5A 1O8KA 2NZMA 4XMYA 4XLCA 2VBMA 4YZAA 3ML3A 4Z05A 3SZEA 2B0RA 3P4GA 2ODLA 4OZZA 1XG2A 2O0WA 1H80A 1WXRA 4OM9A 4Z06A 5C1CA 1TYWA 3SYJA 2W7ZA 4XKVA 2VBKA 2QX3A 2VBEA 2X6XA 2VFPA 3PSZA 1TYUA 1PLUA 2G0YA 2X85A 4EW9A 1IDKA 2QY1A 1EA0A 4HWVA 4YELA 3VMVA 2J8IA 3GQ7A 1L1IA 3UW0A 2VJIA 2XC1A 2BM4A 4URRA 4W8TA 1IB4A 2O6WA 3B8YA 1LLZA 4NK8A 4U4BA 3SY2A 1OFDA 4W8RA 1GQ8A 3KRGA 1KQ5A 4YZXA 2F3LA 2NTQA 3NB2A 1QA2A 1JRGA 2PYHA 3BH6B
chains in the Genus database with same CATH topology
4XNFA 2PYGA 2Z8GA 1O8HA 2IQ7A 3VSVA 3WWGA 1JTAA 4OJOA 4OJ6A 1OGMX 1O8IA 4OJPA 2O04A 3VMWA 1RWRA 1NHCA 4YEJA 4I84A 1BHEA 1OGOX 1O8EA 1VBLA 1IDJA 1DBGA 1OOCA 2INUA 3B90A 3EQOA 1QCXA 4XKWA 5AMVA 2O17A 2NT6A 4XLAA 1O8FA 1O8LA 3LMWA 3JURA 4XOPA 4AVZA 1KCCA 1IA5A 4XL9A 4XONA 1PXZA 4XN3A 2EWEA 1QJVA 4XLFA 4XQFA 2NSTA 1K5CA 3EQNA 2O0VA 1DBOA 2X6YA 3ZSCA 3FY3A 1BN8A 1KTWA 2X3HA 1EE6A 1O88A 4XLHA 4NK6A 5C1EA 2O1DA 4PMHA 4MR0A 1RU4A 2BSPA 4XOTA 2VJJA 1O8DA 4OJLA 4XORA 4Z03A 3VSUA 4XM3A 1RMGA 2PECA 1OFMA 2NTPA 3SUCA 4XN0A 1OFLA 3GQ9A 2UVFA 2X6WA 1KCDA 3ZPPA 3VSTA 2QXZA 1O8GA 2NT9A 1AIRA 1O8MA 1HG8A 1X0CA 1WMRA 4XR6A 4MXNA 1PE9A 4W8SA 3T9GA 4YZQA 3B4NA 4YZ0A 4W8QA 1CZFA 4C2LA 4U49A 2UVEA 1O8JA 2NTBA 3GQAA 2NSPA 3GQ8A 4OZYA 2INVA 4XLEA 3GRHA 4XLCA 4OJ5A 1O8KA 2NZMA 4XMYA 4YZAA 2VBMA 4Z05A 2ODLA 4OZZA 1XG2A 2O0WA 1H80A 4Z06A 5C1CA 4XKVA 2VBKA 2QX3A 2VBEA 2X6XA 1PLUA 4EW9A 2X85A 1IDKA 2QY1A 4HWVA 4YELA 3VMVA 3GQ7A 3UW0A 2VJIA 4URRA 4W8TA 1IB4A 3B8YA 4U4BA 4NK8A 4W8RA 1GQ8A 3KRGA 4YZXA 2NTQA 1JRGA 2PYHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNF A;  2PYG A;  2Z8G A;  1O8H A;  2IQ7 A;  3VSV A;  3WWG A;  1JTA A;  4OJO A;  4OJ6 A;  1OGM X;  1O8I A;  4OJP A;  2O04 A;  3VMW A;  1RWR A;  1NHC A;  4YEJ A;  4I84 A;  1BHE A;  1OGO X;  1O8E A;  1VBL A;  1IDJ A;  1DBG A;  1OOC A;  2INU A;  3B90 A;  3EQO A;  1QCX A;  4XKW A;  5AMV A;  2O17 A;  2NT6 A;  4XLA A;  1O8F A;  1O8L A;  3LMW A;  3JUR A;  4XOP A;  4AVZ A;  1KCC A;  1IA5 A;  4XL9 A;  4XON A;  1PXZ A;  4XN3 A;  2EWE A;  1QJV A;  4XLF A;  4XQF A;  2NST A;  1K5C A;  3EQN A;  2O0V A;  1DBO A;  2X6Y A;  3ZSC A;  3FY3 A;  1BN8 A;  1KTW A;  2X3H A;  1EE6 A;  1O88 A;  4XLH A;  4NK6 A;  5C1E A;  2O1D A;  4PMH A;  4MR0 A;  1RU4 A;  2BSP A;  4XOT A;  2VJJ A;  1O8D A;  4OJL A;  4XOR A;  4Z03 A;  3VSU A;  4XM3 A;  1RMG A;  2PEC A;  1OFM A;  2NTP A;  3SUC A;  4XN0 A;  1OFL A;  3GQ9 A;  2UVF A;  2X6W A;  1KCD A;  3ZPP A;  3VST A;  2QXZ A;  1O8G A;  2NT9 A;  1AIR A;  1O8M A;  1HG8 A;  1X0C A;  1WMR A;  4XR6 A;  4MXN A;  1PE9 A;  4W8S A;  3T9G A;  4YZQ A;  3B4N A;  4YZ0 A;  4W8Q A;  1CZF A;  4C2L A;  4U49 A;  2UVE A;  1O8J A;  2NTB A;  3GQA A;  2NSP A;  3GQ8 A;  4OZY A;  2INV A;  4XLE A;  3GRH A;  4XLC A;  4OJ5 A;  1O8K A;  2NZM A;  4XMY A;  4YZA A;  2VBM A;  4Z05 A;  2ODL A;  4OZZ A;  1XG2 A;  2O0W A;  1H80 A;  4Z06 A;  5C1C A;  4XKV A;  2VBK A;  2QX3 A;  2VBE A;  2X6X A;  1PLU A;  4EW9 A;  2X85 A;  1IDK A;  2QY1 A;  4HWV A;  4YEL A;  3VMV A;  3GQ7 A;  3UW0 A;  2VJI A;  4URR A;  4W8T A;  1IB4 A;  3B8Y A;  4U4B A;  4NK8 A;  4W8R A;  1GQ8 A;  3KRG A;  4YZX A;  2NTQ A;  1JRG A;  2PYH A; 
#chains in the Genus database with same CATH topology
 4XNF A;  3JX8 A;  2XT2 A;  2PYG A;  4YC5 A;  3LYC A;  1K8F A;  3RIQ A;  2Z8G A;  1O8H A;  1EZG A;  2IQ7 A;  2BM7 A;  2J8K A;  3VSV A;  3WWG A;  4OPW A;  1JTA A;  4OJO A;  4OJ6 A;  3PET A;  1OGM X;  1LM1 A;  1O8I A;  4OJP A;  2O04 A;  3VMW A;  1RWR A;  2BX6 A;  2YUH A;  1NHC A;  4YEJ A;  4I84 A;  1BHE A;  1OGO X;  1O8E A;  1VBL A;  1IDJ A;  3LJY A;  1DBG A;  2XTW A;  4YCQ A;  1OOC A;  2INU A;  3B90 A;  3EQO A;  1QCX A;  3NAW A;  4XKW A;  5AMV A;  2O17 A;  2NT6 A;  1HF2 A;  4XLA A;  1O8F A;  4YDT A;  2IOU G;  1QRB A;  2BM5 A;  4JRA C;  1CLW A;  2XTY A;  1O8L A;  5DNS A;  3AK5 A;  3LMW A;  2BM6 A;  3JUR A;  4XOP A;  4AVZ A;  1KCC A;  1IA5 A;  2QYU A;  4XL9 A;  4XON A;  1PXZ A;  4XN3 A;  2EWE A;  1QJV A;  4XLF A;  4XQF A;  2NST A;  4YFO A;  1K5C A;  3EQN A;  2O0V A;  3N90 A;  1DBO A;  2X6Y A;  3ZSC A;  2XTX A;  2VFQ A;  2XT4 A;  3FY3 A;  1BN8 A;  1KTW A;  2VFM A;  1EE6 A;  1O88 A;  2VFN A;  1TSP A;  2X3H A;  3BH7 B;  2QZA A;  4NK6 A;  1K4Z A;  5C1E A;  2O1D A;  3TH0 A;  4PMH A;  1QA3 A;  4MR0 A;  1RU4 A;  2BSP A;  2VFO A;  4XOT A;  5JLV C;  2VJJ A;  1O8D A;  1LLW A;  4OJL A;  4XOR A;  4Z03 A;  2V5I A;  4XM3 A;  1RMG A;  2PEC A;  3PSS A;  3VSU A;  1OFM A;  2NTP A;  3SUC A;  4XN0 A;  1OFL A;  3GQ9 A;  2UVF A;  2X6W A;  4KH3 A;  1KCD A;  3ZPP A;  3VST A;  1QQ1 A;  2QXZ A;  1O8G A;  1TYV A;  1AIR A;  1O8M A;  1HG8 A;  1TYX A;  1WMR A;  1X0C A;  2NT9 A;  3N6Z A;  1OFE A;  3DU1 X;  4XR6 A;  1QA1 A;  4MXN A;  1PE9 A;  4W8S A;  3T9G A;  4YZQ A;  3B4N A;  4YZ0 A;  4W8Q A;  1CZF A;  4C2L A;  4U49 A;  2UVE A;  1QRC A;  1O8J A;  2NTB A;  1DAB A;  3GQA A;  2NSP A;  3GQ8 A;  4V02 C;  4OZY A;  5JMC B;  4XLH A;  2INV A;  4XLE A;  3SQV A;  4YEI A;  3GRH A;  3H09 A;  4OJ5 A;  1O8K A;  2NZM A;  4XMY A;  4XLC A;  2VBM A;  4YZA A;  3ML3 A;  4Z05 A;  3SZE A;  2B0R A;  3P4G A;  2ODL A;  4OZZ A;  1XG2 A;  2O0W A;  1H80 A;  1WXR A;  4OM9 A;  4Z06 A;  5C1C A;  1TYW A;  3SYJ A;  2W7Z A;  4XKV A;  2VBK A;  2QX3 A;  2VBE A;  2X6X A;  2VFP A;  3PSZ A;  1TYU A;  1PLU A;  2G0Y A;  2X85 A;  4EW9 A;  1IDK A;  2QY1 A;  1EA0 A;  4HWV A;  4YEL A;  3VMV A;  2J8I A;  3GQ7 A;  1L1I A;  3UW0 A;  2VJI A;  2XC1 A;  2BM4 A;  4URR A;  4W8T A;  1IB4 A;  2O6W A;  3B8Y A;  1LLZ A;  4NK8 A;  4U4B A;  3SY2 A;  1OFD A;  4W8R A;  1GQ8 A;  3KRG A;  1KQ5 A;  4YZX A;  2F3L A;  2NTQ A;  3NB2 A;  1QA2 A;  1JRG A;  2PYH A;  3BH6 B; 
#chains in the Genus database with same CATH homology
 4XNF A;  2PYG A;  2Z8G A;  1O8H A;  2IQ7 A;  3VSV A;  3WWG A;  1JTA A;  4OJO A;  4OJ6 A;  1OGM X;  1O8I A;  4OJP A;  2O04 A;  3VMW A;  1RWR A;  1NHC A;  4YEJ A;  4I84 A;  1BHE A;  1OGO X;  1O8E A;  1VBL A;  1IDJ A;  1DBG A;  1OOC A;  2INU A;  3B90 A;  3EQO A;  1QCX A;  4XKW A;  5AMV A;  2O17 A;  2NT6 A;  4XLA A;  1O8F A;  1O8L A;  3LMW A;  3JUR A;  4XOP A;  4AVZ A;  1KCC A;  1IA5 A;  4XL9 A;  4XON A;  1PXZ A;  4XN3 A;  2EWE A;  1QJV A;  4XLF A;  4XQF A;  2NST A;  1K5C A;  3EQN A;  2O0V A;  1DBO A;  2X6Y A;  3ZSC A;  3FY3 A;  1BN8 A;  1KTW A;  2X3H A;  1EE6 A;  1O88 A;  4XLH A;  4NK6 A;  5C1E A;  2O1D A;  4PMH A;  4MR0 A;  1RU4 A;  2BSP A;  4XOT A;  2VJJ A;  1O8D A;  4OJL A;  4XOR A;  4Z03 A;  3VSU A;  4XM3 A;  1RMG A;  2PEC A;  1OFM A;  2NTP A;  3SUC A;  4XN0 A;  1OFL A;  3GQ9 A;  2UVF A;  2X6W A;  1KCD A;  3ZPP A;  3VST A;  2QXZ A;  1O8G A;  2NT9 A;  1AIR A;  1O8M A;  1HG8 A;  1X0C A;  1WMR A;  4XR6 A;  4MXN A;  1PE9 A;  4W8S A;  3T9G A;  4YZQ A;  3B4N A;  4YZ0 A;  4W8Q A;  1CZF A;  4C2L A;  4U49 A;  2UVE A;  1O8J A;  2NTB A;  3GQA A;  2NSP A;  3GQ8 A;  4OZY A;  2INV A;  4XLE A;  3GRH A;  4XLC A;  4OJ5 A;  1O8K A;  2NZM A;  4XMY A;  4YZA A;  2VBM A;  4Z05 A;  2ODL A;  4OZZ A;  1XG2 A;  2O0W A;  1H80 A;  4Z06 A;  5C1C A;  4XKV A;  2VBK A;  2QX3 A;  2VBE A;  2X6X A;  1PLU A;  4EW9 A;  2X85 A;  1IDK A;  2QY1 A;  4HWV A;  4YEL A;  3VMV A;  3GQ7 A;  3UW0 A;  2VJI A;  4URR A;  4W8T A;  1IB4 A;  3B8Y A;  4U4B A;  4NK8 A;  4W8R A;  1GQ8 A;  3KRG A;  4YZX A;  2NTQ A;  1JRG A;  2PYH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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