1IDKA

Pectin lyase a
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
359
structure length
359
Chain Sequence
VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGTFSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PECTIN LYASE A
publication title Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases.
pubmed doi rcsb
molecule tags Lyase
total genus 131
structure length 359
sequence length 359
ec nomenclature ec 4.2.2.10: Pectin lyase.
pdb deposition date 1996-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1idkA00
1O8DA 1KCCA 2NT6A 2X6YA 3EQOA 3LMWA 4XLEA 1EE6A 1PLUA 4OJLA 1RMGA 1O8IA 4OZYA 1KTWA 4C2LA 1IA5A 4MXNA 2QXZA 4EW9A 1O8MA 4AVZA 2NSPA 4XORA 4XQFA 2INVA 4OJOA 4W8SA 4XKVA 3SUCA 1IDKA 3GQ7A 4YZXA 1OFLA 1O8HA 4XMYA 2X6XA 4XNFA 4MR0A 4U4BA 1JTAA 5AMVA 3GRHA 4OJPA 1VBLA 4XLFA 1DBOA 2NSTA 4XLHA 4YZAA 5C1EA 1QCXA 3VMWA 4PMHA 1DBGA 1PE9A 3B8YA 4XOPA 4YZ0A 4W8RA 3VSTA 2INUA 5C1CA 4XN3A 3GQAA 1XG2A 2O0WA 4OJ6A 1OOCA 1OGOX 2QY1A 4NK6A 2QX3A 2NZMA 1AIRA 3GQ8A 1O88A 4URRA 4XN0A 2PYHA 2PECA 4OZZA 4YELA 3VSUA 2VJIA 1QJVA 4XR6A 3ZPPA 2X6WA 1OGMX 2O1DA 3B90A 4XOTA 2NTQA 1IDJA 4XL9A 3WWGA 4XKWA 1IB4A 1O8FA 2VBKA 3ZSCA 4Z03A 4HWVA 1O8GA 4W8QA 3JURA 1RWRA 4XONA 2NT9A 2PYGA 2O17A 2VBMA 4W8TA 3B4NA 4Z05A 2UVFA 1GQ8A 2BSPA 3FY3A 1O8LA 2NTBA 1O8JA 2EWEA 3T9GA 3KRGA 3VSVA 4Z06A 3UW0A 1NHCA 2IQ7A 2ODLA 4OJ5A 1OFMA 4XM3A 2UVEA 1O8KA 1X0CA 2X85A 4YEJA 2VJJA 1KCDA 4XLCA 1K5CA 1H80A 2O0VA 2X3HA 1RU4A 1O8EA 1JRGA 1PXZA 4I84A 4U49A 2Z8GA 3EQNA 1BN8A 2VBEA 1CZFA 4YZQA 2NTPA 1BHEA 4XLAA 1WMRA 1HG8A 2O04A 3GQ9A 3VMVA 4NK8A
chains in the Genus database with same CATH superfamily
1O8DA 2G0YA 3JX8A 1KCCA 1HF2A 2NT6A 2X6YA 3EQOA 3LMWA 2BM6A 4XLEA 3PSZA 1EE6A 1PLUA 2O6WA 2XT4A 4OJLA 1RMGA 1O8IA 4OZYA 1KTWA 4OM9A 4C2LA 1IA5A 2VFPA 3LYCA 3NAWA 4MXNA 2QXZA 4EW9A 3LJYA 1O8MA 2XT2A 4AVZA 1QA1A 2NSPA 4XORA 4XQFA 2B0RA 2INVA 2J8IA 4OJOA 4W8SA 4XKVA 3SUCA 1IDKA 1QQ1A 1TYUA 3GQ7A 4YZXA 1OFDA 1OFLA 1O8HA 4XMYA 3SYJA 3ML3A 1KQ5A 2X6XA 4XNFA 2XTYA 4MR0A 4U4BA 1JTAA 2VFNA 5AMVA 3GRHA 4OJPA 1VBLA 4XLFA 1DBOA 2NSTA 2V5IA 4XLHA 4YZAA 5C1EA 1QCXA 3VMWA 4PMHA 4YEIA 1DBGA 1PE9A 3B8YA 5JMCB 1TSPA 3PSSA 2QYUA 4XOPA 4YZ0A 4W8RA 1LM1A 2INUA 3VSTA 4XN3A 4YCQA 5C1CA 5DNSA 3GQAA 1XG2A 2O0WA 4OJ6A 1OOCA 1OGOX 2QY1A 4NK6A 2QX3A 2NZMA 5JLVC 1TYVA 3BH7B 1AIRA 3GQ8A 4OPWA 1O88A 3N6ZA 4URRA 4XN0A 2PYHA 2PECA 4OZZA 4YELA 3VSUA 2VJIA 2F3LA 1QJVA 1TYWA 4XR6A 4YC5A 3ZPPA 2IOUG 2X6WA 1OGMX 2O1DA 3BH6B 3B90A 4XOTA 2NTQA 1IDJA 4YDTA 1EA0A 4XL9A 2XTWA 1K8FA 3SY2A 3TH0A 3WWGA 3N90A 4V02C 4XKWA 1WXRA 3PETA 1O8FA 3NB2A 1IB4A 2VBKA 3ZSCA 4Z03A 1K4ZA 3AK5A 4HWVA 1O8GA 4W8QA 1DABA 2J8KA 3JURA 1QA2A 1L1IA 2VFMA 3H09A 1RWRA 4XONA 2NT9A 2PYGA 2O17A 2VBMA 1LLZA 2YUHA 4W8TA 3B4NA 4Z05A 3P4GA 2XC1A 2UVFA 1GQ8A 2BSPA 3FY3A 2VFOA 1O8LA 2NTBA 1O8JA 2EWEA 3T9GA 3KRGA 3VSVA 2W7ZA 2BM7A 4Z06A 3UW0A 1NHCA 2IQ7A 1QRBA 2BM5A 2ODLA 4OJ5A 1OFMA 2XTXA 4XM3A 2UVEA 1O8KA 1QRCA 1X0CA 2X85A 4YEJA 2VJJA 3SZEA 4XLCA 1KCDA 1CLWA 1K5CA 4JRAC 4KH3A 2VFQA 1H80A 4YFOA 2O0VA 2X3HA 3SQVA 1RU4A 1O8EA 1LLWA 1JRGA 1PXZA 4I84A 4U49A 2Z8GA 3EQNA 1BN8A 2VBEA 1QA3A 1CZFA 4YZQA 2BX6A 1TYXA 3RIQA 2QZAA 2NTPA 1BHEA 1OFEA 4XLAA 1WMRA 1HG8A 2O04A 3DU1X 2BM4A 3GQ9A 3VMVA 4NK8A 1EZGA
chains in the Genus database with same CATH topology
1O8DA 1KCCA 2NT6A 2X6YA 3EQOA 3LMWA 4XLEA 1EE6A 1PLUA 4OJLA 1RMGA 1O8IA 4OZYA 1KTWA 4C2LA 1IA5A 4MXNA 2QXZA 4EW9A 1O8MA 4AVZA 2NSPA 4XORA 4XQFA 2INVA 4OJOA 4W8SA 4XKVA 3SUCA 1IDKA 3GQ7A 4YZXA 1OFLA 1O8HA 4XMYA 2X6XA 4XNFA 4MR0A 4U4BA 1JTAA 5AMVA 3GRHA 4OJPA 1VBLA 4XLFA 1DBOA 2NSTA 4XLHA 4YZAA 5C1EA 1QCXA 3VMWA 4PMHA 1DBGA 1PE9A 3B8YA 4XOPA 4YZ0A 4W8RA 3VSTA 2INUA 5C1CA 4XN3A 3GQAA 1XG2A 2O0WA 4OJ6A 1OOCA 1OGOX 2QY1A 4NK6A 2QX3A 2NZMA 1AIRA 3GQ8A 1O88A 4URRA 4XN0A 2PYHA 2PECA 4OZZA 4YELA 3VSUA 2VJIA 1QJVA 4XR6A 3ZPPA 2X6WA 1OGMX 2O1DA 3B90A 4XOTA 2NTQA 1IDJA 4XL9A 3WWGA 4XKWA 1IB4A 1O8FA 2VBKA 3ZSCA 4Z03A 4HWVA 1O8GA 4W8QA 3JURA 1RWRA 4XONA 2NT9A 2PYGA 2O17A 2VBMA 4W8TA 3B4NA 4Z05A 2UVFA 1GQ8A 2BSPA 3FY3A 1O8LA 2NTBA 1O8JA 2EWEA 3T9GA 3KRGA 3VSVA 4Z06A 3UW0A 1NHCA 2IQ7A 2ODLA 4OJ5A 1OFMA 4XM3A 2UVEA 1O8KA 1X0CA 2X85A 4YEJA 2VJJA 1KCDA 4XLCA 1K5CA 1H80A 2O0VA 2X3HA 1RU4A 1O8EA 1JRGA 1PXZA 4I84A 4U49A 2Z8GA 3EQNA 1BN8A 2VBEA 1CZFA 4YZQA 2NTPA 1BHEA 4XLAA 1WMRA 1HG8A 2O04A 3GQ9A 3VMVA 4NK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8D A;  1KCC A;  2NT6 A;  2X6Y A;  3EQO A;  3LMW A;  4XLE A;  1EE6 A;  1PLU A;  4OJL A;  1RMG A;  1O8I A;  4OZY A;  1KTW A;  4C2L A;  1IA5 A;  4MXN A;  2QXZ A;  4EW9 A;  1O8M A;  4AVZ A;  2NSP A;  4XOR A;  4XQF A;  2INV A;  4OJO A;  4W8S A;  4XKV A;  3SUC A;  1IDK A;  3GQ7 A;  4YZX A;  1OFL A;  1O8H A;  4XMY A;  2X6X A;  4XNF A;  4MR0 A;  4U4B A;  1JTA A;  5AMV A;  3GRH A;  4OJP A;  1VBL A;  4XLF A;  1DBO A;  2NST A;  4XLH A;  4YZA A;  5C1E A;  1QCX A;  3VMW A;  4PMH A;  1DBG A;  1PE9 A;  3B8Y A;  4XOP A;  4YZ0 A;  4W8R A;  3VST A;  2INU A;  5C1C A;  4XN3 A;  3GQA A;  1XG2 A;  2O0W A;  4OJ6 A;  1OOC A;  1OGO X;  2QY1 A;  4NK6 A;  2QX3 A;  2NZM A;  1AIR A;  3GQ8 A;  1O88 A;  4URR A;  4XN0 A;  2PYH A;  2PEC A;  4OZZ A;  4YEL A;  3VSU A;  2VJI A;  1QJV A;  4XR6 A;  3ZPP A;  2X6W A;  1OGM X;  2O1D A;  3B90 A;  4XOT A;  2NTQ A;  1IDJ A;  4XL9 A;  3WWG A;  4XKW A;  1IB4 A;  1O8F A;  2VBK A;  3ZSC A;  4Z03 A;  4HWV A;  1O8G A;  4W8Q A;  3JUR A;  1RWR A;  4XON A;  2NT9 A;  2PYG A;  2O17 A;  2VBM A;  4W8T A;  3B4N A;  4Z05 A;  2UVF A;  1GQ8 A;  2BSP A;  3FY3 A;  1O8L A;  2NTB A;  1O8J A;  2EWE A;  3T9G A;  3KRG A;  3VSV A;  4Z06 A;  3UW0 A;  1NHC A;  2IQ7 A;  2ODL A;  4OJ5 A;  1OFM A;  4XM3 A;  2UVE A;  1O8K A;  1X0C A;  2X85 A;  4YEJ A;  2VJJ A;  1KCD A;  4XLC A;  1K5C A;  1H80 A;  2O0V A;  2X3H A;  1RU4 A;  1O8E A;  1JRG A;  1PXZ A;  4I84 A;  4U49 A;  2Z8G A;  3EQN A;  1BN8 A;  2VBE A;  1CZF A;  4YZQ A;  2NTP A;  1BHE A;  4XLA A;  1WMR A;  1HG8 A;  2O04 A;  3GQ9 A;  3VMV A;  4NK8 A; 
#chains in the Genus database with same CATH topology
 1O8D A;  2G0Y A;  3JX8 A;  1KCC A;  1HF2 A;  2NT6 A;  2X6Y A;  3EQO A;  3LMW A;  2BM6 A;  4XLE A;  3PSZ A;  1EE6 A;  1PLU A;  2O6W A;  2XT4 A;  4OJL A;  1RMG A;  1O8I A;  4OZY A;  1KTW A;  4OM9 A;  4C2L A;  1IA5 A;  2VFP A;  3LYC A;  3NAW A;  4MXN A;  2QXZ A;  4EW9 A;  3LJY A;  1O8M A;  2XT2 A;  4AVZ A;  1QA1 A;  2NSP A;  4XOR A;  4XQF A;  2B0R A;  2INV A;  2J8I A;  4OJO A;  4W8S A;  4XKV A;  3SUC A;  1IDK A;  1QQ1 A;  1TYU A;  3GQ7 A;  4YZX A;  1OFD A;  1OFL A;  1O8H A;  4XMY A;  3SYJ A;  3ML3 A;  1KQ5 A;  2X6X A;  4XNF A;  2XTY A;  4MR0 A;  4U4B A;  1JTA A;  2VFN A;  5AMV A;  3GRH A;  4OJP A;  1VBL A;  4XLF A;  1DBO A;  2NST A;  2V5I A;  4XLH A;  4YZA A;  5C1E A;  1QCX A;  3VMW A;  4PMH A;  4YEI A;  1DBG A;  1PE9 A;  3B8Y A;  5JMC B;  1TSP A;  3PSS A;  2QYU A;  4XOP A;  4YZ0 A;  4W8R A;  1LM1 A;  2INU A;  3VST A;  4XN3 A;  4YCQ A;  5C1C A;  5DNS A;  3GQA A;  1XG2 A;  2O0W A;  4OJ6 A;  1OOC A;  1OGO X;  2QY1 A;  4NK6 A;  2QX3 A;  2NZM A;  5JLV C;  1TYV A;  3BH7 B;  1AIR A;  3GQ8 A;  4OPW A;  1O88 A;  3N6Z A;  4URR A;  4XN0 A;  2PYH A;  2PEC A;  4OZZ A;  4YEL A;  3VSU A;  2VJI A;  2F3L A;  1QJV A;  1TYW A;  4XR6 A;  4YC5 A;  3ZPP A;  2IOU G;  2X6W A;  1OGM X;  2O1D A;  3BH6 B;  3B90 A;  4XOT A;  2NTQ A;  1IDJ A;  4YDT A;  1EA0 A;  4XL9 A;  2XTW A;  1K8F A;  3SY2 A;  3TH0 A;  3WWG A;  3N90 A;  4V02 C;  4XKW A;  1WXR A;  3PET A;  1O8F A;  3NB2 A;  1IB4 A;  2VBK A;  3ZSC A;  4Z03 A;  1K4Z A;  3AK5 A;  4HWV A;  1O8G A;  4W8Q A;  1DAB A;  2J8K A;  3JUR A;  1QA2 A;  1L1I A;  2VFM A;  3H09 A;  1RWR A;  4XON A;  2NT9 A;  2PYG A;  2O17 A;  2VBM A;  1LLZ A;  2YUH A;  4W8T A;  3B4N A;  4Z05 A;  3P4G A;  2XC1 A;  2UVF A;  1GQ8 A;  2BSP A;  3FY3 A;  2VFO A;  1O8L A;  2NTB A;  1O8J A;  2EWE A;  3T9G A;  3KRG A;  3VSV A;  2W7Z A;  2BM7 A;  4Z06 A;  3UW0 A;  1NHC A;  2IQ7 A;  1QRB A;  2BM5 A;  2ODL A;  4OJ5 A;  1OFM A;  2XTX A;  4XM3 A;  2UVE A;  1O8K A;  1QRC A;  1X0C A;  2X85 A;  4YEJ A;  2VJJ A;  3SZE A;  4XLC A;  1KCD A;  1CLW A;  1K5C A;  4JRA C;  4KH3 A;  2VFQ A;  1H80 A;  4YFO A;  2O0V A;  2X3H A;  3SQV A;  1RU4 A;  1O8E A;  1LLW A;  1JRG A;  1PXZ A;  4I84 A;  4U49 A;  2Z8G A;  3EQN A;  1BN8 A;  2VBE A;  1QA3 A;  1CZF A;  4YZQ A;  2BX6 A;  1TYX A;  3RIQ A;  2QZA A;  2NTP A;  1BHE A;  1OFE A;  4XLA A;  1WMR A;  1HG8 A;  2O04 A;  3DU1 X;  2BM4 A;  3GQ9 A;  3VMV A;  4NK8 A;  1EZG A; 
#chains in the Genus database with same CATH homology
 1O8D A;  1KCC A;  2NT6 A;  2X6Y A;  3EQO A;  3LMW A;  4XLE A;  1EE6 A;  1PLU A;  4OJL A;  1RMG A;  1O8I A;  4OZY A;  1KTW A;  4C2L A;  1IA5 A;  4MXN A;  2QXZ A;  4EW9 A;  1O8M A;  4AVZ A;  2NSP A;  4XOR A;  4XQF A;  2INV A;  4OJO A;  4W8S A;  4XKV A;  3SUC A;  1IDK A;  3GQ7 A;  4YZX A;  1OFL A;  1O8H A;  4XMY A;  2X6X A;  4XNF A;  4MR0 A;  4U4B A;  1JTA A;  5AMV A;  3GRH A;  4OJP A;  1VBL A;  4XLF A;  1DBO A;  2NST A;  4XLH A;  4YZA A;  5C1E A;  1QCX A;  3VMW A;  4PMH A;  1DBG A;  1PE9 A;  3B8Y A;  4XOP A;  4YZ0 A;  4W8R A;  3VST A;  2INU A;  5C1C A;  4XN3 A;  3GQA A;  1XG2 A;  2O0W A;  4OJ6 A;  1OOC A;  1OGO X;  2QY1 A;  4NK6 A;  2QX3 A;  2NZM A;  1AIR A;  3GQ8 A;  1O88 A;  4URR A;  4XN0 A;  2PYH A;  2PEC A;  4OZZ A;  4YEL A;  3VSU A;  2VJI A;  1QJV A;  4XR6 A;  3ZPP A;  2X6W A;  1OGM X;  2O1D A;  3B90 A;  4XOT A;  2NTQ A;  1IDJ A;  4XL9 A;  3WWG A;  4XKW A;  1IB4 A;  1O8F A;  2VBK A;  3ZSC A;  4Z03 A;  4HWV A;  1O8G A;  4W8Q A;  3JUR A;  1RWR A;  4XON A;  2NT9 A;  2PYG A;  2O17 A;  2VBM A;  4W8T A;  3B4N A;  4Z05 A;  2UVF A;  1GQ8 A;  2BSP A;  3FY3 A;  1O8L A;  2NTB A;  1O8J A;  2EWE A;  3T9G A;  3KRG A;  3VSV A;  4Z06 A;  3UW0 A;  1NHC A;  2IQ7 A;  2ODL A;  4OJ5 A;  1OFM A;  4XM3 A;  2UVE A;  1O8K A;  1X0C A;  2X85 A;  4YEJ A;  2VJJ A;  1KCD A;  4XLC A;  1K5C A;  1H80 A;  2O0V A;  2X3H A;  1RU4 A;  1O8E A;  1JRG A;  1PXZ A;  4I84 A;  4U49 A;  2Z8G A;  3EQN A;  1BN8 A;  2VBE A;  1CZF A;  4YZQ A;  2NTP A;  1BHE A;  4XLA A;  1WMR A;  1HG8 A;  2O04 A;  3GQ9 A;  3VMV A;  4NK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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