1IDKA

Pectin lyase a
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
359
structure length
359
Chain Sequence
VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGTFSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PECTIN LYASE A
publication title Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases.
pubmed doi rcsb
total genus 131
structure length 359
sequence length 359
ec nomenclature ec 4.2.2.10: Pectin lyase.
pdb deposition date 1996-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1idkA00
3LMWA 1O8IA 2O0WA 2X3HA 4NK6A 4XORA 1OGOX 2INUA 4OJLA 1O8KA 4XNFA 4URRA 2VBEA 4XONA 4XR6A 3GQ9A 4XOPA 3GQAA 4YZXA 2NSTA 3T9GA 4YEJA 4NK8A 3JURA 4XOTA 4MXNA 1QJVA 2PYGA 1O8HA 2NTPA 1RU4A 2X6YA 4OJPA 2ODLA 1NHCA 4HWVA 3ZSCA 1O8EA 1JRGA 4OZZA 3KRGA 3EQOA 2NZMA 1O8FA 2VBKA 3B90A 2Z8GA 3VSTA 4XN3A 1HG8A 1O88A 4Z05A 2NTQA 4I84A 2PECA 3VSUA 2X6WA 1PXZA 1IDJA 1RMGA 4PMHA 1XG2A 4Z06A 2NSPA 3B4NA 4XKWA 3VSVA 4OZYA 3FY3A 2X6XA 2QY1A 3GRHA 2NTBA 1KTWA 1PLUA 1DBOA 2BSPA 4XN0A 4W8SA 1O8MA 1DBGA 2INVA 2VJIA 3WWGA 3ZPPA 4YZQA 1O8LA 3VMVA 1RWRA 1GQ8A 1VBLA 1O8DA 4YZ0A 1EE6A 1IA5A 2NT6A 2O0VA 3B8YA 2IQ7A 4OJ5A 1H80A 5C1CA 1JTAA 1O8JA 4AVZA 1KCCA 1O8GA 1K5CA 2VBMA 4C2LA 1OOCA 2PYHA 3GQ7A 1IDKA 4XLFA 4XM3A 4W8RA 1X0CA 4XQFA 1BHEA 4XLAA 4OJOA 2VJJA 1WMRA 4YZAA 2UVFA 1OFLA 4OJ6A 3EQNA 5C1EA 3GQ8A 4EW9A 2EWEA 1OFMA 1QCXA 2NT9A 2O1DA 2O17A 4MR0A 4Z03A 1BN8A 2X85A 1KCDA 4U4BA 4XLHA 4W8TA 1IB4A 1PE9A 4W8QA 4XL9A 4XLCA 1CZFA 2O04A 4XMYA 1AIRA 2QX3A 2UVEA 4U49A 2QXZA 3UW0A 1OGMX 4XKVA 5AMVA 4XLEA 4YELA 3SUCA 3VMWA
chains in the Genus database with same CATH superfamily
3LMWA 1QA1A 1O8IA 2O0WA 2X3HA 3LYCA 4NK6A 4XORA 3LJYA 1OGOX 3PSSA 2INUA 4OJLA 1O8KA 4XNFA 1WXRA 4URRA 2VBEA 2VFNA 4XONA 3N6ZA 4XR6A 3SY2A 3GQ9A 4XOPA 3GQAA 4YZXA 2NSTA 4KH3A 3T9GA 4YDTA 3SYJA 1LM1A 4YEJA 3NB2A 4NK8A 2VFOA 1K8FA 3JURA 4OM9A 4XOTA 2QZAA 4MXNA 1QJVA 1QRCA 3SQVA 2PYGA 1O8HA 2NTPA 1RU4A 2X6YA 4OJPA 2ODLA 1QA3A 1NHCA 4HWVA 3ZSCA 1O8EA 1QA2A 2XTWA 1JRGA 2J8KA 4OZZA 3KRGA 3EQOA 2F3LA 2BM7A 3TH0A 1O8FA 2NZMA 2VBKA 2VFMA 3B90A 3SZEA 2Z8GA 3VSTA 4XN3A 1HG8A 1O88A 4Z05A 2NTQA 4I84A 1TYWA 2PECA 2X6WA 4YFOA 3JX8A 2XTXA 3VSUA 2IOUG 1PXZA 1IDJA 1RMGA 3H09A 1XG2A 2YUHA 4PMHA 4Z06A 2NSPA 3B4NA 4XKWA 3VSVA 4OZYA 3FY3A 2BM4A 2G0YA 2QY1A 2X6XA 3GRHA 3P4GA 1K4ZA 2NTBA 1KTWA 1PLUA 1DBOA 2BSPA 4XN0A 4W8SA 2XC1A 1O8MA 3BH6B 1EZGA 2QYUA 1DBGA 2INVA 2VJIA 3WWGA 3ZPPA 1TYUA 3PETA 4YZQA 1O8LA 1QQ1A 3VMVA 1RWRA 1GQ8A 2XT2A 4YEIA 1VBLA 4YCQA 3PSZA 1O8DA 4YZ0A 1EE6A 1IA5A 2NT6A 2O0VA 3B8YA 2IQ7A 2BM5A 4OJ5A 1H80A 5C1CA 2VFPA 1EA0A 1JTAA 1O8JA 4OPWA 4AVZA 1L1IA 2BX6A 5DNSA 1KCCA 1O8GA 1KQ5A 1K5CA 2VBMA 1HF2A 4C2LA 1OOCA 2PYHA 3GQ7A 1IDKA 4XLFA 4XM3A 3N90A 4V02C 4W8RA 2V5IA 1DABA 1X0CA 2XTYA 4XQFA 1BHEA 4XLAA 3BH7B 4OJOA 2VJJA 1WMRA 4YC5A 4YZAA 2UVFA 1OFLA 2J8IA 2VFQA 4OJ6A 1LLZA 1OFDA 3EQNA 3GQ8A 5C1EA 4EW9A 2EWEA 3ML3A 1OFMA 1QCXA 1CLWA 5JMCB 2NT9A 1QRBA 2O1DA 3DU1X 2BM6A 2O17A 4MR0A 2O6WA 4Z03A 2B0RA 2XT4A 1TYVA 1BN8A 3AK5A 2X85A 1KCDA 4U4BA 4XLHA 5JLVC 4W8TA 4JRAC 1IB4A 3NAWA 3RIQA 1PE9A 4W8QA 4XL9A 4XLCA 1CZFA 1OFEA 2O04A 4XMYA 1TYXA 1TSPA 1AIRA 1LLWA 2QX3A 2UVEA 4U49A 2W7ZA 2QXZA 3UW0A 1OGMX 4XKVA 5AMVA 4XLEA 4YELA 3SUCA 3VMWA
chains in the Genus database with same CATH topology
3LMWA 1O8IA 2O0WA 2X3HA 4NK6A 4XORA 1OGOX 2INUA 4OJLA 1O8KA 4XNFA 4URRA 2VBEA 4XONA 4XR6A 3GQ9A 4XOPA 3GQAA 4YZXA 2NSTA 3T9GA 4YEJA 4NK8A 3JURA 4XOTA 4MXNA 1QJVA 2PYGA 1O8HA 2NTPA 1RU4A 2X6YA 4OJPA 2ODLA 1NHCA 4HWVA 3ZSCA 1O8EA 1JRGA 4OZZA 3KRGA 3EQOA 2NZMA 1O8FA 2VBKA 3B90A 2Z8GA 3VSTA 4XN3A 1HG8A 1O88A 4Z05A 2NTQA 4I84A 2PECA 3VSUA 2X6WA 1PXZA 1IDJA 1RMGA 4PMHA 1XG2A 4Z06A 2NSPA 3B4NA 4XKWA 3VSVA 4OZYA 3FY3A 2X6XA 2QY1A 3GRHA 2NTBA 1KTWA 1PLUA 1DBOA 2BSPA 4XN0A 4W8SA 1O8MA 1DBGA 2INVA 2VJIA 3WWGA 3ZPPA 4YZQA 1O8LA 3VMVA 1RWRA 1GQ8A 1VBLA 1O8DA 4YZ0A 1EE6A 1IA5A 2NT6A 2O0VA 3B8YA 2IQ7A 4OJ5A 1H80A 5C1CA 1JTAA 1O8JA 4AVZA 1KCCA 1O8GA 1K5CA 2VBMA 4C2LA 1OOCA 2PYHA 3GQ7A 1IDKA 4XLFA 4XM3A 4W8RA 1X0CA 4XQFA 1BHEA 4XLAA 4OJOA 2VJJA 1WMRA 4YZAA 2UVFA 1OFLA 4OJ6A 3EQNA 5C1EA 3GQ8A 4EW9A 2EWEA 1OFMA 1QCXA 2NT9A 2O1DA 2O17A 4MR0A 4Z03A 1BN8A 2X85A 1KCDA 4U4BA 4XLHA 4W8TA 1IB4A 1PE9A 4W8QA 4XL9A 4XLCA 1CZFA 2O04A 4XMYA 1AIRA 2QX3A 2UVEA 4U49A 2QXZA 3UW0A 1OGMX 4XKVA 5AMVA 4XLEA 4YELA 3SUCA 3VMWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LMW A;  1O8I A;  2O0W A;  2X3H A;  4NK6 A;  4XOR A;  1OGO X;  2INU A;  4OJL A;  1O8K A;  4XNF A;  4URR A;  2VBE A;  4XON A;  4XR6 A;  3GQ9 A;  4XOP A;  3GQA A;  4YZX A;  2NST A;  3T9G A;  4YEJ A;  4NK8 A;  3JUR A;  4XOT A;  4MXN A;  1QJV A;  2PYG A;  1O8H A;  2NTP A;  1RU4 A;  2X6Y A;  4OJP A;  2ODL A;  1NHC A;  4HWV A;  3ZSC A;  1O8E A;  1JRG A;  4OZZ A;  3KRG A;  3EQO A;  2NZM A;  1O8F A;  2VBK A;  3B90 A;  2Z8G A;  3VST A;  4XN3 A;  1HG8 A;  1O88 A;  4Z05 A;  2NTQ A;  4I84 A;  2PEC A;  3VSU A;  2X6W A;  1PXZ A;  1IDJ A;  1RMG A;  4PMH A;  1XG2 A;  4Z06 A;  2NSP A;  3B4N A;  4XKW A;  3VSV A;  4OZY A;  3FY3 A;  2X6X A;  2QY1 A;  3GRH A;  2NTB A;  1KTW A;  1PLU A;  1DBO A;  2BSP A;  4XN0 A;  4W8S A;  1O8M A;  1DBG A;  2INV A;  2VJI A;  3WWG A;  3ZPP A;  4YZQ A;  1O8L A;  3VMV A;  1RWR A;  1GQ8 A;  1VBL A;  1O8D A;  4YZ0 A;  1EE6 A;  1IA5 A;  2NT6 A;  2O0V A;  3B8Y A;  2IQ7 A;  4OJ5 A;  1H80 A;  5C1C A;  1JTA A;  1O8J A;  4AVZ A;  1KCC A;  1O8G A;  1K5C A;  2VBM A;  4C2L A;  1OOC A;  2PYH A;  3GQ7 A;  1IDK A;  4XLF A;  4XM3 A;  4W8R A;  1X0C A;  4XQF A;  1BHE A;  4XLA A;  4OJO A;  2VJJ A;  1WMR A;  4YZA A;  2UVF A;  1OFL A;  4OJ6 A;  3EQN A;  5C1E A;  3GQ8 A;  4EW9 A;  2EWE A;  1OFM A;  1QCX A;  2NT9 A;  2O1D A;  2O17 A;  4MR0 A;  4Z03 A;  1BN8 A;  2X85 A;  1KCD A;  4U4B A;  4XLH A;  4W8T A;  1IB4 A;  1PE9 A;  4W8Q A;  4XL9 A;  4XLC A;  1CZF A;  2O04 A;  4XMY A;  1AIR A;  2QX3 A;  2UVE A;  4U49 A;  2QXZ A;  3UW0 A;  1OGM X;  4XKV A;  5AMV A;  4XLE A;  4YEL A;  3SUC A;  3VMW A; 
#chains in the Genus database with same CATH topology
 3LMW A;  1QA1 A;  1O8I A;  2O0W A;  2X3H A;  3LYC A;  4NK6 A;  4XOR A;  3LJY A;  1OGO X;  3PSS A;  2INU A;  4OJL A;  1O8K A;  4XNF A;  1WXR A;  4URR A;  2VBE A;  2VFN A;  4XON A;  3N6Z A;  4XR6 A;  3SY2 A;  3GQ9 A;  4XOP A;  3GQA A;  4YZX A;  2NST A;  4KH3 A;  3T9G A;  4YDT A;  3SYJ A;  1LM1 A;  4YEJ A;  3NB2 A;  4NK8 A;  2VFO A;  1K8F A;  3JUR A;  4OM9 A;  4XOT A;  2QZA A;  4MXN A;  1QJV A;  1QRC A;  3SQV A;  2PYG A;  1O8H A;  2NTP A;  1RU4 A;  2X6Y A;  4OJP A;  2ODL A;  1QA3 A;  1NHC A;  4HWV A;  3ZSC A;  1O8E A;  1QA2 A;  2XTW A;  1JRG A;  2J8K A;  4OZZ A;  3KRG A;  3EQO A;  2F3L A;  2BM7 A;  3TH0 A;  1O8F A;  2NZM A;  2VBK A;  2VFM A;  3B90 A;  3SZE A;  2Z8G A;  3VST A;  4XN3 A;  1HG8 A;  1O88 A;  4Z05 A;  2NTQ A;  4I84 A;  1TYW A;  2PEC A;  2X6W A;  4YFO A;  3JX8 A;  2XTX A;  3VSU A;  2IOU G;  1PXZ A;  1IDJ A;  1RMG A;  3H09 A;  1XG2 A;  2YUH A;  4PMH A;  4Z06 A;  2NSP A;  3B4N A;  4XKW A;  3VSV A;  4OZY A;  3FY3 A;  2BM4 A;  2G0Y A;  2QY1 A;  2X6X A;  3GRH A;  3P4G A;  1K4Z A;  2NTB A;  1KTW A;  1PLU A;  1DBO A;  2BSP A;  4XN0 A;  4W8S A;  2XC1 A;  1O8M A;  3BH6 B;  1EZG A;  2QYU A;  1DBG A;  2INV A;  2VJI A;  3WWG A;  3ZPP A;  1TYU A;  3PET A;  4YZQ A;  1O8L A;  1QQ1 A;  3VMV A;  1RWR A;  1GQ8 A;  2XT2 A;  4YEI A;  1VBL A;  4YCQ A;  3PSZ A;  1O8D A;  4YZ0 A;  1EE6 A;  1IA5 A;  2NT6 A;  2O0V A;  3B8Y A;  2IQ7 A;  2BM5 A;  4OJ5 A;  1H80 A;  5C1C A;  2VFP A;  1EA0 A;  1JTA A;  1O8J A;  4OPW A;  4AVZ A;  1L1I A;  2BX6 A;  5DNS A;  1KCC A;  1O8G A;  1KQ5 A;  1K5C A;  2VBM A;  1HF2 A;  4C2L A;  1OOC A;  2PYH A;  3GQ7 A;  1IDK A;  4XLF A;  4XM3 A;  3N90 A;  4V02 C;  4W8R A;  2V5I A;  1DAB A;  1X0C A;  2XTY A;  4XQF A;  1BHE A;  4XLA A;  3BH7 B;  4OJO A;  2VJJ A;  1WMR A;  4YC5 A;  4YZA A;  2UVF A;  1OFL A;  2J8I A;  2VFQ A;  4OJ6 A;  1LLZ A;  1OFD A;  3EQN A;  3GQ8 A;  5C1E A;  4EW9 A;  2EWE A;  3ML3 A;  1OFM A;  1QCX A;  1CLW A;  5JMC B;  2NT9 A;  1QRB A;  2O1D A;  3DU1 X;  2BM6 A;  2O17 A;  4MR0 A;  2O6W A;  4Z03 A;  2B0R A;  2XT4 A;  1TYV A;  1BN8 A;  3AK5 A;  2X85 A;  1KCD A;  4U4B A;  4XLH A;  5JLV C;  4W8T A;  4JRA C;  1IB4 A;  3NAW A;  3RIQ A;  1PE9 A;  4W8Q A;  4XL9 A;  4XLC A;  1CZF A;  1OFE A;  2O04 A;  4XMY A;  1TYX A;  1TSP A;  1AIR A;  1LLW A;  2QX3 A;  2UVE A;  4U49 A;  2W7Z A;  2QXZ A;  3UW0 A;  1OGM X;  4XKV A;  5AMV A;  4XLE A;  4YEL A;  3SUC A;  3VMW A; 
#chains in the Genus database with same CATH homology
 3LMW A;  1O8I A;  2O0W A;  2X3H A;  4NK6 A;  4XOR A;  1OGO X;  2INU A;  4OJL A;  1O8K A;  4XNF A;  4URR A;  2VBE A;  4XON A;  4XR6 A;  3GQ9 A;  4XOP A;  3GQA A;  4YZX A;  2NST A;  3T9G A;  4YEJ A;  4NK8 A;  3JUR A;  4XOT A;  4MXN A;  1QJV A;  2PYG A;  1O8H A;  2NTP A;  1RU4 A;  2X6Y A;  4OJP A;  2ODL A;  1NHC A;  4HWV A;  3ZSC A;  1O8E A;  1JRG A;  4OZZ A;  3KRG A;  3EQO A;  2NZM A;  1O8F A;  2VBK A;  3B90 A;  2Z8G A;  3VST A;  4XN3 A;  1HG8 A;  1O88 A;  4Z05 A;  2NTQ A;  4I84 A;  2PEC A;  3VSU A;  2X6W A;  1PXZ A;  1IDJ A;  1RMG A;  4PMH A;  1XG2 A;  4Z06 A;  2NSP A;  3B4N A;  4XKW A;  3VSV A;  4OZY A;  3FY3 A;  2X6X A;  2QY1 A;  3GRH A;  2NTB A;  1KTW A;  1PLU A;  1DBO A;  2BSP A;  4XN0 A;  4W8S A;  1O8M A;  1DBG A;  2INV A;  2VJI A;  3WWG A;  3ZPP A;  4YZQ A;  1O8L A;  3VMV A;  1RWR A;  1GQ8 A;  1VBL A;  1O8D A;  4YZ0 A;  1EE6 A;  1IA5 A;  2NT6 A;  2O0V A;  3B8Y A;  2IQ7 A;  4OJ5 A;  1H80 A;  5C1C A;  1JTA A;  1O8J A;  4AVZ A;  1KCC A;  1O8G A;  1K5C A;  2VBM A;  4C2L A;  1OOC A;  2PYH A;  3GQ7 A;  1IDK A;  4XLF A;  4XM3 A;  4W8R A;  1X0C A;  4XQF A;  1BHE A;  4XLA A;  4OJO A;  2VJJ A;  1WMR A;  4YZA A;  2UVF A;  1OFL A;  4OJ6 A;  3EQN A;  5C1E A;  3GQ8 A;  4EW9 A;  2EWE A;  1OFM A;  1QCX A;  2NT9 A;  2O1D A;  2O17 A;  4MR0 A;  4Z03 A;  1BN8 A;  2X85 A;  1KCD A;  4U4B A;  4XLH A;  4W8T A;  1IB4 A;  1PE9 A;  4W8Q A;  4XL9 A;  4XLC A;  1CZF A;  2O04 A;  4XMY A;  1AIR A;  2QX3 A;  2UVE A;  4U49 A;  2QXZ A;  3UW0 A;  1OGM X;  4XKV A;  5AMV A;  4XLE A;  4YEL A;  3SUC A;  3VMW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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