4KH3A

Structure of a bacterial self-associating protein
Total Genus 207
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
207
sequence length
500
structure length
492
Chain Sequence
ADIVVHPGETVNGGTLVNHDNQFVSGTANGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAESSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTATNTRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Immune system
molecule keywords Antigen 43
publication title The antigen 43 structure reveals a molecular Velcro-like mechanism of autotransporter-mediated bacterial clumping.
pubmed doi rcsb
source organism Escherichia coli
total genus 207
structure length 492
sequence length 500
ec nomenclature
pdb deposition date 2013-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16168 AIDA Adhesin of bacterial autotransporter system, probable stalk
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 4kh3A00
1QQ1A 1TYVA 3AK5A 1WXRA 3ML3A 3H09A 1QA1A 4KH3A 1DABA 1TYUA 3SYJA 1QRBA 2VFOA 3SZEA 1QA2A 3TH0A 2IOUG 2VFNA 1QA3A 2VFQA 2XC1A 2VFMA 1TSPA 3RIQA 2VFPA 1TYWA 4OM9A 1TYXA 2V5IA 1CLWA 1QRCA
chains in the Genus database with same CATH superfamily
1O8MA 3B90A 3ZSCA 4XM3A 2NSPA 1QJVA 3GQAA 3PSZA 1QA1A 1OOCA 3NB2A 5JLVC 1IDKA 2EWEA 4XOPA 4YZXA 3PSSA 4OJLA 2XTXA 3SYJA 3VMWA 2VBMA 1O8EA 4XN3A 4YZ0A 4YELA 1O88A 3BH7B 4YDTA 3TH0A 4Z03A 2VFNA 2Z8GA 3P4GA 4XKWA 3FY3A 4XORA 2PECA 1OFLA 4OZYA 4YZAA 1VBLA 1TSPA 2BX6A 2UVFA 2J8KA 2PYGA 2VFPA 4OM9A 1IB4A 3EQOA 3SUCA 1HG8A 2J8IA 1IA5A 1QRCA 1BN8A 2BM5A 1HF2A 4XONA 1IDJA 4Z06A 3H09A 3ML3A 2O17A 2O0VA 3GRHA 1CZFA 3LMWA 4AVZA 5DNSA 1QRBA 2YUHA 3SQVA 2VJIA 3ZPPA 4YFOA 1AIRA 3LYCA 4C2LA 3UW0A 4XQFA 1WMRA 2UVEA 4OJ6A 4XKVA 3GQ9A 4JRAC 1H80A 2IOUG 3EQNA 1QA3A 2W7ZA 4OJ5A 1RMGA 2INVA 2XTWA 1OFEA 4W8SA 1O8GA 1X0CA 1JRGA 4OPWA 4XLHA 4URRA 1K8FA 1LLZA 2INUA 1PXZA 2X85A 3VSVA 1CLWA 3JX8A 1O8HA 2NSTA 2G0YA 1QQ1A 2NTPA 1PE9A 2O1DA 2O6WA 4XLAA 1DBGA 3JURA 4XMYA 3AK5A 5C1EA 4XL9A 3B8YA 1OGOX 4XN0A 2O04A 2X6WA 3GQ8A 3GQ7A 2QX3A 1TYUA 4YEIA 1DABA 3BH6B 2O0WA 3PETA 1KTWA 4XLCA 1JTAA 2ODLA 3VSUA 2NT9A 3SZEA 4OJOA 1NHCA 4XLFA 4Z05A 1OFDA 4OZZA 4XLEA 2B0RA 1EA0A 3VMVA 2IQ7A 1EE6A 2XC1A 1RWRA 4I84A 4YC5A 1QCXA 2BM7A 3LJYA 2XT2A 4HWVA 4XOTA 5AMVA 4YCQA 1TYWA 2XTYA 3N6ZA 2V5IA 1L1IA 4OJPA 2VBEA 1KCCA 2QY1A 1OFMA 2NTBA 4W8QA 2BM6A 3SY2A 1TYVA 2QYUA 2F3LA 4MR0A 1WXRA 1OGMX 3WWGA 4XR6A 4W8TA 1KQ5A 4KH3A 2NTQA 3B4NA 1O8IA 1XG2A 4NK6A 4YZQA 4EW9A 1O8JA 1EZGA 3NAWA 2VFOA 2QZAA 5JMCB 2X6XA 2QXZA 4YEJA 5C1CA 2NT6A 2XT4A 2VBKA 2X3HA 4NK8A 4XNFA 1RU4A 1QA2A 1DBOA 4MXNA 3KRGA 4U49A 2BSPA 2VFQA 4PMHA 1BHEA 3VSTA 3DU1X 1O8KA 2PYHA 2X6YA 2NZMA 2VFMA 4V02C 2VJJA 3RIQA 1O8LA 1GQ8A 1K5CA 1O8FA 1PLUA 1LM1A 4U4BA 4W8RA 2BM4A 3N90A 1K4ZA 1O8DA 1TYXA 1LLWA 3T9GA 1KCDA
chains in the Genus database with same CATH topology
2G0YA 1QQ1A 2BM6A 1TYVA 2BM5A 3AK5A 2F3LA 1HF2A 1WXRA 3H09A 3ML3A 1QA1A 1KQ5A 4KH3A 5JLVC 1DABA 1TYUA 4OJLA 3SYJA 3BH6B 1QRBA 2YUHA 3PETA 2VFOA 5JMCB 3LYCA 3SZEA 4OJ6A 4OJOA 4OM9A 3BH7B 3TH0A 4JRAC 1QA2A 2IOUG 2B0RA 2VFNA 1QA3A 3P4GA 2VFQA 2W7ZA 2XC1A 2BM7A 3LJYA 4OJ5A 4V02C 2BX6A 1TSPA 2VFMA 3RIQA 2VFPA 1TYWA 2BM4A 3N90A 1K4ZA 1TYXA 2V5IA 1K8FA 3N6ZA 4OPWA 4OJPA 2J8IA 1CLWA 1QRCA 3JX8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQ1 A;  1TYV A;  3AK5 A;  1WXR A;  3ML3 A;  3H09 A;  1QA1 A;  4KH3 A;  1DAB A;  1TYU A;  3SYJ A;  1QRB A;  2VFO A;  3SZE A;  1QA2 A;  3TH0 A;  2IOU G;  2VFN A;  1QA3 A;  2VFQ A;  2XC1 A;  2VFM A;  1TSP A;  3RIQ A;  2VFP A;  1TYW A;  4OM9 A;  1TYX A;  2V5I A;  1CLW A;  1QRC A; 
#chains in the Genus database with same CATH topology
 1O8M A;  3B90 A;  3ZSC A;  4XM3 A;  2NSP A;  1QJV A;  3GQA A;  3PSZ A;  1QA1 A;  1OOC A;  3NB2 A;  5JLV C;  1IDK A;  2EWE A;  4XOP A;  4YZX A;  3PSS A;  4OJL A;  2XTX A;  3SYJ A;  3VMW A;  2VBM A;  1O8E A;  4XN3 A;  4YZ0 A;  4YEL A;  1O88 A;  3BH7 B;  4YDT A;  3TH0 A;  4Z03 A;  2VFN A;  2Z8G A;  3P4G A;  4XKW A;  3FY3 A;  4XOR A;  2PEC A;  1OFL A;  4OZY A;  4YZA A;  1VBL A;  1TSP A;  2BX6 A;  2UVF A;  2J8K A;  2PYG A;  2VFP A;  4OM9 A;  1IB4 A;  3EQO A;  3SUC A;  1HG8 A;  2J8I A;  1IA5 A;  1QRC A;  1BN8 A;  2BM5 A;  1HF2 A;  4XON A;  1IDJ A;  4Z06 A;  3H09 A;  3ML3 A;  2O17 A;  2O0V A;  3GRH A;  1CZF A;  3LMW A;  4AVZ A;  5DNS A;  1QRB A;  2YUH A;  3SQV A;  2VJI A;  3ZPP A;  4YFO A;  1AIR A;  3LYC A;  4C2L A;  3UW0 A;  4XQF A;  1WMR A;  2UVE A;  4OJ6 A;  4XKV A;  3GQ9 A;  4JRA C;  1H80 A;  2IOU G;  3EQN A;  1QA3 A;  2W7Z A;  4OJ5 A;  1RMG A;  2INV A;  2XTW A;  1OFE A;  4W8S A;  1O8G A;  1X0C A;  1JRG A;  4OPW A;  4XLH A;  4URR A;  1K8F A;  1LLZ A;  2INU A;  1PXZ A;  2X85 A;  3VSV A;  1CLW A;  3JX8 A;  1O8H A;  2NST A;  2G0Y A;  1QQ1 A;  2NTP A;  1PE9 A;  2O1D A;  2O6W A;  4XLA A;  1DBG A;  3JUR A;  4XMY A;  3AK5 A;  5C1E A;  4XL9 A;  3B8Y A;  1OGO X;  4XN0 A;  2O04 A;  2X6W A;  3GQ8 A;  3GQ7 A;  2QX3 A;  1TYU A;  4YEI A;  1DAB A;  3BH6 B;  2O0W A;  3PET A;  1KTW A;  4XLC A;  1JTA A;  2ODL A;  3VSU A;  2NT9 A;  3SZE A;  4OJO A;  1NHC A;  4XLF A;  4Z05 A;  1OFD A;  4OZZ A;  4XLE A;  2B0R A;  1EA0 A;  3VMV A;  2IQ7 A;  1EE6 A;  2XC1 A;  1RWR A;  4I84 A;  4YC5 A;  1QCX A;  2BM7 A;  3LJY A;  2XT2 A;  4HWV A;  4XOT A;  5AMV A;  4YCQ A;  1TYW A;  2XTY A;  3N6Z A;  2V5I A;  1L1I A;  4OJP A;  2VBE A;  1KCC A;  2QY1 A;  1OFM A;  2NTB A;  4W8Q A;  2BM6 A;  3SY2 A;  1TYV A;  2QYU A;  2F3L A;  4MR0 A;  1WXR A;  1OGM X;  3WWG A;  4XR6 A;  4W8T A;  1KQ5 A;  4KH3 A;  2NTQ A;  3B4N A;  1O8I A;  1XG2 A;  4NK6 A;  4YZQ A;  4EW9 A;  1O8J A;  1EZG A;  3NAW A;  2VFO A;  2QZA A;  5JMC B;  2X6X A;  2QXZ A;  4YEJ A;  5C1C A;  2NT6 A;  2XT4 A;  2VBK A;  2X3H A;  4NK8 A;  4XNF A;  1RU4 A;  1QA2 A;  1DBO A;  4MXN A;  3KRG A;  4U49 A;  2BSP A;  2VFQ A;  4PMH A;  1BHE A;  3VST A;  3DU1 X;  1O8K A;  2PYH A;  2X6Y A;  2NZM A;  2VFM A;  4V02 C;  2VJJ A;  3RIQ A;  1O8L A;  1GQ8 A;  1K5C A;  1O8F A;  1PLU A;  1LM1 A;  4U4B A;  4W8R A;  2BM4 A;  3N90 A;  1K4Z A;  1O8D A;  1TYX A;  1LLW A;  3T9G A;  1KCD A; 
#chains in the Genus database with same CATH homology
 2G0Y A;  1QQ1 A;  2BM6 A;  1TYV A;  2BM5 A;  3AK5 A;  2F3L A;  1HF2 A;  1WXR A;  3H09 A;  3ML3 A;  1QA1 A;  1KQ5 A;  4KH3 A;  5JLV C;  1DAB A;  1TYU A;  4OJL A;  3SYJ A;  3BH6 B;  1QRB A;  2YUH A;  3PET A;  2VFO A;  5JMC B;  3LYC A;  3SZE A;  4OJ6 A;  4OJO A;  4OM9 A;  3BH7 B;  3TH0 A;  4JRA C;  1QA2 A;  2IOU G;  2B0R A;  2VFN A;  1QA3 A;  3P4G A;  2VFQ A;  2W7Z A;  2XC1 A;  2BM7 A;  3LJY A;  4OJ5 A;  4V02 C;  2BX6 A;  1TSP A;  2VFM A;  3RIQ A;  2VFP A;  1TYW A;  2BM4 A;  3N90 A;  1K4Z A;  1TYX A;  2V5I A;  1K8F A;  3N6Z A;  4OPW A;  4OJP A;  2J8I A;  1CLW A;  1QRC A;  3JX8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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