4KH3A

Structure of a bacterial self-associating protein
Total Genus 207
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
207
sequence length
500
structure length
492
Chain Sequence
b'ADIVVHPGETVNGGTLVNHDNQFVSGTANGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAESSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTATNTRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAID'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Antigen 43
publication title The antigen 43 structure reveals a molecular Velcro-like mechanism of autotransporter-mediated bacterial clumping.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Immune system
total genus 207
structure length 492
sequence length 500
ec nomenclature
pdb deposition date 2013-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16168 AIDA Adhesin of bacterial autotransporter system, probable stalk
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 4kh3A00
4OM9A 1DABA 1QA1A 1CLWA 2VFOA 3SYJA 2VFPA 1QA2A 1QRBA 1QA3A 3ML3A 1QQ1A 3AK5A 2VFMA 2VFNA 4KH3A 1TYXA 2IOUG 2VFQA 2XC1A 3TH0A 1TSPA 1TYVA 3SZEA 1WXRA 1TYWA 1QRCA 3RIQA 3H09A 2V5IA 1TYUA
chains in the Genus database with same CATH superfamily
1JRGA 1PLUA 4XM3A 2NTBA 2QX3A 3JX8A 3LJYA 2YUHA 3VSVA 3PETA 3FY3A 4XR6A 1O8DA 1WMRA 4YC5A 4XN3A 5C1CA 4NK8A 3SYJA 4XL9A 2BX6A 2B0RA 4XKWA 4YEJA 1O8MA 1QRBA 1QQ1A 2VBMA 1AIRA 3EQNA 3GQ9A 2VFMA 4OJPA 1RMGA 4MXNA 3DU1X 4OPWA 1RWRA 4YZAA 3SY2A 2BM6A 2BM5A 3PSZA 4XLFA 1BHEA 1OGOX 3GQ7A 1DBOA 5JLVC 3TH0A 1CZFA 2O17A 2QXZA 4YDTA 3NAWA 4URRA 2XT4A 1OFLA 4XORA 1PE9A 1QRCA 1OGMX 5AMVA 3RIQA 3H09A 4OJOA 2NTPA 1IB4A 4XONA 2J8IA 2O1DA 2VBKA 4XLAA 4XN0A 2PYHA 2X6XA 1OOCA 1O8LA 1XG2A 4Z06A 1QA2A 1IA5A 4I84A 3WWGA 3BH7B 1LLZA 2NSPA 2O6WA 2XTXA 4W8RA 1K5CA 1O8FA 3LMWA 3SQVA 4YFOA 3VSTA 4YEIA 2ODLA 1TYXA 1OFEA 4HWVA 2BSPA 2QZAA 2UVFA 2NTQA 2NT6A 2XTWA 2NSTA 4XLEA 1KTWA 1TYVA 1NHCA 3EQOA 1EE6A 1GQ8A 2XT2A 4OJ6A 4W8TA 1KQ5A 3SUCA 3B4NA 1TYUA 1K4ZA 2IQ7A 4XKVA 4XOTA 1DABA 2G0YA 3UW0A 1KCDA 1CLWA 1QA1A 2X6WA 1JTAA 2UVEA 1QJVA 4XLCA 3BH6B 1DBGA 4C2LA 2BM7A 4Z05A 2VFPA 4OJLA 4U49A 1O8JA 2W7ZA 3T9GA 1QA3A 1OFDA 3GRHA 4XLHA 3PSSA 2NZMA 1HF2A 1IDKA 2O0VA 3P4GA 2VJIA 3ZPPA 2QY1A 3N90A 2VFNA 2X3HA 4KH3A 4MR0A 1QCXA 2EWEA 2IOUG 1EA0A 1K8FA 4W8SA 2PECA 1O8KA 2F3LA 4OZZA 2BM4A 2VBEA 1X0CA 2XTYA 3SZEA 1IDJA 1O8HA 1WXRA 3N6ZA 4YZ0A 1RU4A 4V02C 4XNFA 4AVZA 5C1EA 3KRGA 4Z03A 1LLWA 4NK6A 4OZYA 4OM9A 1O8GA 3NB2A 1O88A 2INVA 4U4BA 2VFOA 4YELA 2PYGA 2X6YA 3VMWA 4YZQA 4YZXA 3GQAA 5JMCB 4XQFA 4XMYA 2X85A 2INUA 2QYUA 3ZSCA 2Z8GA 3JURA 3ML3A 3AK5A 1OFMA 2NT9A 4PMHA 1O8EA 1L1IA 1BN8A 2O0WA 2VJJA 1EZGA 1H80A 1O8IA 4YCQA 3VSUA 1LM1A 1HG8A 2VFQA 2XC1A 1PXZA 1TSPA 3LYCA 1KCCA 4OJ5A 4XOPA 3B90A 1VBLA 1TYWA 2J8KA 5DNSA 2O04A 3B8YA 3VMVA 4EW9A 2V5IA 4W8QA 4JRAC 3GQ8A
chains in the Genus database with same CATH topology
1K4ZA 3JX8A 3LJYA 4OM9A 2G0YA 1DABA 1QA1A 1CLWA 2YUHA 2VFOA 2J8IA 3BH6B 2BM7A 4OJOA 3SYJA 5JMCB 2VFPA 2BX6A 2B0RA 1QA2A 4OJLA 2W7ZA 1QRBA 3BH7B 1QA3A 1HF2A 3ML3A 1QQ1A 3P4GA 3AK5A 3N90A 2VFMA 4OJPA 2VFNA 4KH3A 4OPWA 1TYXA 2BM6A 2BM5A 2IOUG 1K8FA 5JLVC 2F3LA 2VFQA 2XC1A 2BM4A 3TH0A 1TSPA 3LYCA 1TYVA 4OJ5A 3SZEA 1WXRA 3N6ZA 4OJ6A 1TYWA 4V02C 1KQ5A 1QRCA 3RIQA 3PETA 3H09A 2V5IA 4JRAC 1TYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OM9 A;  1DAB A;  1QA1 A;  1CLW A;  2VFO A;  3SYJ A;  2VFP A;  1QA2 A;  1QRB A;  1QA3 A;  3ML3 A;  1QQ1 A;  3AK5 A;  2VFM A;  2VFN A;  4KH3 A;  1TYX A;  2IOU G;  2VFQ A;  2XC1 A;  3TH0 A;  1TSP A;  1TYV A;  3SZE A;  1WXR A;  1TYW A;  1QRC A;  3RIQ A;  3H09 A;  2V5I A;  1TYU A; 
#chains in the Genus database with same CATH topology
 1JRG A;  1PLU A;  4XM3 A;  2NTB A;  2QX3 A;  3JX8 A;  3LJY A;  2YUH A;  3VSV A;  3PET A;  3FY3 A;  4XR6 A;  1O8D A;  1WMR A;  4YC5 A;  4XN3 A;  5C1C A;  4NK8 A;  3SYJ A;  4XL9 A;  2BX6 A;  2B0R A;  4XKW A;  4YEJ A;  1O8M A;  1QRB A;  1QQ1 A;  2VBM A;  1AIR A;  3EQN A;  3GQ9 A;  2VFM A;  4OJP A;  1RMG A;  4MXN A;  3DU1 X;  4OPW A;  1RWR A;  4YZA A;  3SY2 A;  2BM6 A;  2BM5 A;  3PSZ A;  4XLF A;  1BHE A;  1OGO X;  3GQ7 A;  1DBO A;  5JLV C;  3TH0 A;  1CZF A;  2O17 A;  2QXZ A;  4YDT A;  3NAW A;  4URR A;  2XT4 A;  1OFL A;  4XOR A;  1PE9 A;  1QRC A;  1OGM X;  5AMV A;  3RIQ A;  3H09 A;  4OJO A;  2NTP A;  1IB4 A;  4XON A;  2J8I A;  2O1D A;  2VBK A;  4XLA A;  4XN0 A;  2PYH A;  2X6X A;  1OOC A;  1O8L A;  1XG2 A;  4Z06 A;  1QA2 A;  1IA5 A;  4I84 A;  3WWG A;  3BH7 B;  1LLZ A;  2NSP A;  2O6W A;  2XTX A;  4W8R A;  1K5C A;  1O8F A;  3LMW A;  3SQV A;  4YFO A;  3VST A;  4YEI A;  2ODL A;  1TYX A;  1OFE A;  4HWV A;  2BSP A;  2QZA A;  2UVF A;  2NTQ A;  2NT6 A;  2XTW A;  2NST A;  4XLE A;  1KTW A;  1TYV A;  1NHC A;  3EQO A;  1EE6 A;  1GQ8 A;  2XT2 A;  4OJ6 A;  4W8T A;  1KQ5 A;  3SUC A;  3B4N A;  1TYU A;  1K4Z A;  2IQ7 A;  4XKV A;  4XOT A;  1DAB A;  2G0Y A;  3UW0 A;  1KCD A;  1CLW A;  1QA1 A;  2X6W A;  1JTA A;  2UVE A;  1QJV A;  4XLC A;  3BH6 B;  1DBG A;  4C2L A;  2BM7 A;  4Z05 A;  2VFP A;  4OJL A;  4U49 A;  1O8J A;  2W7Z A;  3T9G A;  1QA3 A;  1OFD A;  3GRH A;  4XLH A;  3PSS A;  2NZM A;  1HF2 A;  1IDK A;  2O0V A;  3P4G A;  2VJI A;  3ZPP A;  2QY1 A;  3N90 A;  2VFN A;  2X3H A;  4KH3 A;  4MR0 A;  1QCX A;  2EWE A;  2IOU G;  1EA0 A;  1K8F A;  4W8S A;  2PEC A;  1O8K A;  2F3L A;  4OZZ A;  2BM4 A;  2VBE A;  1X0C A;  2XTY A;  3SZE A;  1IDJ A;  1O8H A;  1WXR A;  3N6Z A;  4YZ0 A;  1RU4 A;  4V02 C;  4XNF A;  4AVZ A;  5C1E A;  3KRG A;  4Z03 A;  1LLW A;  4NK6 A;  4OZY A;  4OM9 A;  1O8G A;  3NB2 A;  1O88 A;  2INV A;  4U4B A;  2VFO A;  4YEL A;  2PYG A;  2X6Y A;  3VMW A;  4YZQ A;  4YZX A;  3GQA A;  5JMC B;  4XQF A;  4XMY A;  2X85 A;  2INU A;  2QYU A;  3ZSC A;  2Z8G A;  3JUR A;  3ML3 A;  3AK5 A;  1OFM A;  2NT9 A;  4PMH A;  1O8E A;  1L1I A;  1BN8 A;  2O0W A;  2VJJ A;  1EZG A;  1H80 A;  1O8I A;  4YCQ A;  3VSU A;  1LM1 A;  1HG8 A;  2VFQ A;  2XC1 A;  1PXZ A;  1TSP A;  3LYC A;  1KCC A;  4OJ5 A;  4XOP A;  3B90 A;  1VBL A;  1TYW A;  2J8K A;  5DNS A;  2O04 A;  3B8Y A;  3VMV A;  4EW9 A;  2V5I A;  4W8Q A;  4JRA C;  3GQ8 A; 
#chains in the Genus database with same CATH homology
 1K4Z A;  3JX8 A;  3LJY A;  4OM9 A;  2G0Y A;  1DAB A;  1QA1 A;  1CLW A;  2YUH A;  2VFO A;  2J8I A;  3BH6 B;  2BM7 A;  4OJO A;  3SYJ A;  5JMC B;  2VFP A;  2BX6 A;  2B0R A;  1QA2 A;  4OJL A;  2W7Z A;  1QRB A;  3BH7 B;  1QA3 A;  1HF2 A;  3ML3 A;  1QQ1 A;  3P4G A;  3AK5 A;  3N90 A;  2VFM A;  4OJP A;  2VFN A;  4KH3 A;  4OPW A;  1TYX A;  2BM6 A;  2BM5 A;  2IOU G;  1K8F A;  5JLV C;  2F3L A;  2VFQ A;  2XC1 A;  2BM4 A;  3TH0 A;  1TSP A;  3LYC A;  1TYV A;  4OJ5 A;  3SZE A;  1WXR A;  3N6Z A;  4OJ6 A;  1TYW A;  4V02 C;  1KQ5 A;  1QRC A;  3RIQ A;  3PET A;  3H09 A;  2V5I A;  4JRA C;  1TYU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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