4KH3A

Structure of a bacterial self-associating protein
Total Genus 207
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
207
sequence length
500
structure length
492
Chain Sequence
ADIVVHPGETVNGGTLVNHDNQFVSGTANGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAESSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTATNTRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Antigen 43
publication title The antigen 43 structure reveals a molecular Velcro-like mechanism of autotransporter-mediated bacterial clumping.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Immune system
total genus 207
structure length 492
sequence length 500
ec nomenclature
pdb deposition date 2013-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16168 AIDA Adhesin of bacterial autotransporter system, probable stalk
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 4kh3A00
1DABA 3H09A 2VFMA 1TYVA 1TYUA 1QRCA 3RIQA 1CLWA 3SZEA 4KH3A 1WXRA 1QA1A 3TH0A 1TYWA 3AK5A 2VFPA 1QRBA 3SYJA 3ML3A 2VFQA 2V5IA 1QQ1A 2VFOA 1QA3A 2IOUG 1TSPA 1TYXA 1QA2A 2VFNA 4OM9A 2XC1A
chains in the Genus database with same CATH superfamily
4Z03A 1OFDA 1O8IA 2X6YA 2J8IA 4W8TA 4XR6A 1JRGA 3VSVA 2Z8GA 1OOCA 3B4NA 4OJ5A 3GQ9A 2X6XA 4U4BA 2INVA 2BM7A 1JTAA 1K4ZA 2IQ7A 2NSTA 2VBMA 3LYCA 2BM4A 2VFPA 4YZXA 2BSPA 4V02C 1DBGA 2QYUA 1IDJA 4YCQA 1OFEA 2VBKA 2XTYA 4OZZA 2YUHA 4OZYA 3SYJA 1NHCA 1BHEA 2V5IA 2O6WA 1KTWA 1O88A 2X3HA 3PSZA 4MXNA 2IOUG 1TYXA 1GQ8A 1IDKA 1PE9A 1HF2A 3GQAA 4YFOA 4XORA 3N90A 3PSSA 4C2LA 5JLVC 2QZAA 3UW0A 4XLFA 4YDTA 4OJ6A 4XMYA 4XN0A 2XTWA 1DABA 2QY1A 4YZAA 1EZGA 2VFMA 1O8HA 1TYVA 1X0CA 3GRHA 3VMWA 3RIQA 3SZEA 1WXRA 1QA1A 1OFLA 4OJLA 2VJIA 3ZPPA 3AK5A 3N6ZA 2NT9A 3BH6B 4YEJA 1EE6A 3LJYA 4XLHA 1QRBA 3PETA 2NTBA 2O0WA 1O8JA 1KCCA 1H80A 2XT4A 2G0YA 2VFOA 2EWEA 4NK6A 4I84A 1VBLA 4PMHA 4YC5A 1QA3A 4Z06A 2O04A 1KCDA 1TSPA 3JX8A 1O8MA 5C1EA 1QA2A 1K8FA 4XQFA 3P4GA 2ODLA 3SY2A 1PXZA 4YZ0A 3NB2A 4OM9A 1O8DA 2QXZA 4XNFA 5DNSA 1RU4A 3SQVA 4AVZA 2BX6A 2UVEA 1BN8A 3H09A 3VMVA 1QRCA 1RWRA 1DBOA 1CLWA 2INUA 4NK8A 4U49A 2XTXA 4KH3A 3B90A 1LM1A 2PYHA 3EQNA 3GQ7A 2NZMA 3TH0A 4YEIA 1AIRA 1PLUA 4XN3A 3GQ8A 2PYGA 2O17A 1K5CA 1O8KA 1OFMA 2QX3A 4XLAA 4JRAC 3ZSCA 3SUCA 4XOTA 2O1DA 5JMCB 4XLCA 4XKWA 4XKVA 1EA0A 1IA5A 1CZFA 2NTQA 1LLWA 2NSPA 5C1CA 2VJJA 2UVFA 2J8KA 2W7ZA 4Z05A 3NAWA 4W8RA 4W8QA 4XONA 2O0VA 3LMWA 1IB4A 4URRA 2BM6A 4XOPA 2X85A 1TYUA 3JURA 4HWVA 1XG2A 2PECA 4OPWA 2X6WA 2NTPA 3T9GA 1KQ5A 4EW9A 5AMVA 4YELA 1TYWA 1O8FA 1QCXA 2BM5A 2B0RA 4OJPA 4YZQA 1O8EA 3ML3A 4OJOA 3VSTA 2VFQA 1HG8A 2F3LA 1O8GA 1RMGA 2XT2A 1QQ1A 2NT6A 3EQOA 1OGOX 1WMRA 3KRGA 1O8LA 4XL9A 4XM3A 1QJVA 3DU1X 1L1IA 1LLZA 2VFNA 3B8YA 3FY3A 4W8SA 4XLEA 3VSUA 4MR0A 1OGMX 3WWGA 3BH7B 2XC1A 2VBEA
chains in the Genus database with same CATH topology
1DABA 2BX6A 2BM6A 3H09A 2VFMA 1TYVA 1TYUA 1QRCA 2J8IA 3RIQA 1CLWA 4OPWA 3SZEA 4OJ5A 4KH3A 1KQ5A 1WXRA 1QA1A 2BM7A 1K4ZA 1TYWA 3LYCA 3N6ZA 4OJLA 3TH0A 3BH6B 2BM4A 2VFPA 3AK5A 3LJYA 1QRBA 2BM5A 3PETA 2B0RA 4V02C 3SYJA 4OJPA 3ML3A 4OJOA 2YUHA 2VFQA 4JRAC 2F3LA 2V5IA 2G0YA 1QQ1A 2VFOA 5JMCB 1QA3A 2IOUG 1TSPA 3JX8A 1TYXA 1HF2A 1K8FA 1QA2A 3P4GA 3N90A 5JLVC 2VFNA 2W7ZA 4OJ6A 4OM9A 3BH7B 2XC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DAB A;  3H09 A;  2VFM A;  1TYV A;  1TYU A;  1QRC A;  3RIQ A;  1CLW A;  3SZE A;  4KH3 A;  1WXR A;  1QA1 A;  3TH0 A;  1TYW A;  3AK5 A;  2VFP A;  1QRB A;  3SYJ A;  3ML3 A;  2VFQ A;  2V5I A;  1QQ1 A;  2VFO A;  1QA3 A;  2IOU G;  1TSP A;  1TYX A;  1QA2 A;  2VFN A;  4OM9 A;  2XC1 A; 
#chains in the Genus database with same CATH topology
 4Z03 A;  1OFD A;  1O8I A;  2X6Y A;  2J8I A;  4W8T A;  4XR6 A;  1JRG A;  3VSV A;  2Z8G A;  1OOC A;  3B4N A;  4OJ5 A;  3GQ9 A;  2X6X A;  4U4B A;  2INV A;  2BM7 A;  1JTA A;  1K4Z A;  2IQ7 A;  2NST A;  2VBM A;  3LYC A;  2BM4 A;  2VFP A;  4YZX A;  2BSP A;  4V02 C;  1DBG A;  2QYU A;  1IDJ A;  4YCQ A;  1OFE A;  2VBK A;  2XTY A;  4OZZ A;  2YUH A;  4OZY A;  3SYJ A;  1NHC A;  1BHE A;  2V5I A;  2O6W A;  1KTW A;  1O88 A;  2X3H A;  3PSZ A;  4MXN A;  2IOU G;  1TYX A;  1GQ8 A;  1IDK A;  1PE9 A;  1HF2 A;  3GQA A;  4YFO A;  4XOR A;  3N90 A;  3PSS A;  4C2L A;  5JLV C;  2QZA A;  3UW0 A;  4XLF A;  4YDT A;  4OJ6 A;  4XMY A;  4XN0 A;  2XTW A;  1DAB A;  2QY1 A;  4YZA A;  1EZG A;  2VFM A;  1O8H A;  1TYV A;  1X0C A;  3GRH A;  3VMW A;  3RIQ A;  3SZE A;  1WXR A;  1QA1 A;  1OFL A;  4OJL A;  2VJI A;  3ZPP A;  3AK5 A;  3N6Z A;  2NT9 A;  3BH6 B;  4YEJ A;  1EE6 A;  3LJY A;  4XLH A;  1QRB A;  3PET A;  2NTB A;  2O0W A;  1O8J A;  1KCC A;  1H80 A;  2XT4 A;  2G0Y A;  2VFO A;  2EWE A;  4NK6 A;  4I84 A;  1VBL A;  4PMH A;  4YC5 A;  1QA3 A;  4Z06 A;  2O04 A;  1KCD A;  1TSP A;  3JX8 A;  1O8M A;  5C1E A;  1QA2 A;  1K8F A;  4XQF A;  3P4G A;  2ODL A;  3SY2 A;  1PXZ A;  4YZ0 A;  3NB2 A;  4OM9 A;  1O8D A;  2QXZ A;  4XNF A;  5DNS A;  1RU4 A;  3SQV A;  4AVZ A;  2BX6 A;  2UVE A;  1BN8 A;  3H09 A;  3VMV A;  1QRC A;  1RWR A;  1DBO A;  1CLW A;  2INU A;  4NK8 A;  4U49 A;  2XTX A;  4KH3 A;  3B90 A;  1LM1 A;  2PYH A;  3EQN A;  3GQ7 A;  2NZM A;  3TH0 A;  4YEI A;  1AIR A;  1PLU A;  4XN3 A;  3GQ8 A;  2PYG A;  2O17 A;  1K5C A;  1O8K A;  1OFM A;  2QX3 A;  4XLA A;  4JRA C;  3ZSC A;  3SUC A;  4XOT A;  2O1D A;  5JMC B;  4XLC A;  4XKW A;  4XKV A;  1EA0 A;  1IA5 A;  1CZF A;  2NTQ A;  1LLW A;  2NSP A;  5C1C A;  2VJJ A;  2UVF A;  2J8K A;  2W7Z A;  4Z05 A;  3NAW A;  4W8R A;  4W8Q A;  4XON A;  2O0V A;  3LMW A;  1IB4 A;  4URR A;  2BM6 A;  4XOP A;  2X85 A;  1TYU A;  3JUR A;  4HWV A;  1XG2 A;  2PEC A;  4OPW A;  2X6W A;  2NTP A;  3T9G A;  1KQ5 A;  4EW9 A;  5AMV A;  4YEL A;  1TYW A;  1O8F A;  1QCX A;  2BM5 A;  2B0R A;  4OJP A;  4YZQ A;  1O8E A;  3ML3 A;  4OJO A;  3VST A;  2VFQ A;  1HG8 A;  2F3L A;  1O8G A;  1RMG A;  2XT2 A;  1QQ1 A;  2NT6 A;  3EQO A;  1OGO X;  1WMR A;  3KRG A;  1O8L A;  4XL9 A;  4XM3 A;  1QJV A;  3DU1 X;  1L1I A;  1LLZ A;  2VFN A;  3B8Y A;  3FY3 A;  4W8S A;  4XLE A;  3VSU A;  4MR0 A;  1OGM X;  3WWG A;  3BH7 B;  2XC1 A;  2VBE A; 
#chains in the Genus database with same CATH homology
 1DAB A;  2BX6 A;  2BM6 A;  3H09 A;  2VFM A;  1TYV A;  1TYU A;  1QRC A;  2J8I A;  3RIQ A;  1CLW A;  4OPW A;  3SZE A;  4OJ5 A;  4KH3 A;  1KQ5 A;  1WXR A;  1QA1 A;  2BM7 A;  1K4Z A;  1TYW A;  3LYC A;  3N6Z A;  4OJL A;  3TH0 A;  3BH6 B;  2BM4 A;  2VFP A;  3AK5 A;  3LJY A;  1QRB A;  2BM5 A;  3PET A;  2B0R A;  4V02 C;  3SYJ A;  4OJP A;  3ML3 A;  4OJO A;  2YUH A;  2VFQ A;  4JRA C;  2F3L A;  2V5I A;  2G0Y A;  1QQ1 A;  2VFO A;  5JMC B;  1QA3 A;  2IOU G;  1TSP A;  3JX8 A;  1TYX A;  1HF2 A;  1K8F A;  1QA2 A;  3P4G A;  3N90 A;  5JLV C;  2VFN A;  2W7Z A;  4OJ6 A;  4OM9 A;  3BH7 B;  2XC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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