The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
78
|
sequence length |
211
|
structure length |
200
|
Chain Sequence |
MITYPLPEQLPLLTNCQLEDEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLDCLFEDCADYASFRFANFNLVHFNQTRLVESEFFEVTWLLLEACDLTESNWLNTSLGLDFSQNTFERLTFSPNYLSGLVTPEQAIYLASALGLVIT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystallization of a Pentapeptide-Repeat Protein by Reductive Cyclic Pentylation of Free Amines with Glutaraldehyde.
pubmed doi rcsb |
| molecule keywords |
PENTAPEPTIDE REPEAT FAMILY PROTEIN
|
| molecule tags |
Inhibitor
|
| source organism |
Enterococcus faecalis
|
| total genus |
78
|
| structure length |
200
|
| sequence length |
211
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-01-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00805 | Pentapeptide | Pentapeptide repeats (8 copies) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Pectate Lyase C-like |
#chains in the Genus database with same CATH superfamily 2BM4 A; 5JLV C; 2J8I A; 4JRA C; 2W7Z A; 2BM6 A; 3N90 A; 2F3L A; 2G0Y A; 2BM5 A; 5JMC B; 2BM7 A; #chains in the Genus database with same CATH topology 1LLW A; 1WXR A; 4XLC A; 1O8D A; 4U49 A; 4YDT A; 1O8G A; 4YCQ A; 1PE9 A; 3GQ7 A; 2O04 A; 3FY3 A; 2F3L A; 1PLU A; 1QJV A; 4YZ0 A; 1HG8 A; 1BN8 A; 1QQ1 A; 4HWV A; 1QCX A; 3EQO A; 4OPW A; 3KRG A; 4YEI A; 2VJI A; 3JUR A; 2XT4 A; 4W8T A; 5DNS A; 3LJY A; 2NZM A; 1NHC A; 1O8F A; 1OOC A; 2QZA A; 1TYU A; 2YUH A; 2NTB A; 2W7Z A; 2X6Y A; 2O6W A; 2XTW A; 1O8E A; 2B0R A; 1EA0 A; 3AK5 A; 3PET A; 1AIR A; 2INU A; 4XM3 A; 1CZF A; 4YFO A; 1WMR A; 2INV A; 4YZA A; 1GQ8 A; 3TH0 A; 1LLZ A; 2BM5 A; 1X0C A; 4W8R A; 1OFL A; 2VJJ A; 2XTY A; 1H80 A; 2UVE A; 2PEC A; 3ZSC A; 1QRB A; 2X3H A; 2EWE A; 3EQN A; 1JRG A; 1KCC A; 3GQ9 A; 4PMH A; 4U4B A; 4Z05 A; 4XLH A; 1K8F A; 4JRA C; 3B8Y A; 1O8J A; 3DU1 X; 3VMV A; 2XT2 A; 2IQ7 A; 3ZPP A; 5C1E A; 1QA2 A; 1O8K A; 4EW9 A; 1EE6 A; 2BSP A; 1KTW A; 3GRH A; 4I84 A; 4OZY A; 1KCD A; 4MR0 A; 2NTP A; 3LYC A; 4YEJ A; 2NT9 A; 3GQA A; 4URR A; 4Z03 A; 3LMW A; 4KH3 A; 2QXZ A; 5C1C A; 1DAB A; 4YEL A; 4XOR A; 2VBK A; 2UVF A; 4XLA A; 4XKV A; 1KQ5 A; 4XOT A; 2VFQ A; 1JTA A; 4W8S A; 1OGM X; 2J8K A; 4V02 C; 4YC5 A; 2XC1 A; 4OJ5 A; 3UW0 A; 4MXN A; 1TSP A; 1QA3 A; 2PYG A; 4XN0 A; 3NB2 A; 2VBM A; 1DBO A; 1IB4 A; 2X6W A; 2G0Y A; 2IOU G; 4XLE A; 2QX3 A; 1OFD A; 2BM7 A; 3SY2 A; 2VBE A; 2ODL A; 4XON A; 4XL9 A; 3BH6 B; 3N90 A; 3WWG A; 2NT6 A; 1QRC A; 1IDJ A; 2BX6 A; 4XLF A; 1PXZ A; 5AMV A; 5JMC B; 4OZZ A; 4YZX A; 4XMY A; 1O8I A; 2J8I A; 2QY1 A; 2VFO A; 1TYW A; 2O17 A; 3SZE A; 4XQF A; 3P4G A; 2NST A; 2PYH A; 1HF2 A; 2VFP A; 2NSP A; 1O8M A; 1K4Z A; 4AVZ A; 3SUC A; 4C2L A; 1BHE A; 1DBG A; 3PSZ A; 4XR6 A; 1CLW A; 3VST A; 2Z8G A; 1O8L A; 1LM1 A; 4XKW A; 1RU4 A; 2XTX A; 1TYX A; 2VFN A; 4NK6 A; 3GQ8 A; 4OJO A; 1IA5 A; 3SQV A; 2BM6 A; 4OJP A; 1O88 A; 1QA1 A; 1L1I A; 3B90 A; 4XNF A; 1EZG A; 3H09 A; 1RWR A; 2X85 A; 4YZQ A; 3VSV A; 1OFE A; 3RIQ A; 4NK8 A; 3JX8 A; 3NAW A; 3SYJ A; 1OFM A; 4XN3 A; 2O1D A; 2O0W A; 2BM4 A; 3N6Z A; 4OM9 A; 4XOP A; 2NTQ A; 3B4N A; 3PSS A; 1TYV A; 4Z06 A; 1VBL A; 3T9G A; 3VMW A; 3VSU A; 2VFM A; 4OJ6 A; 5JLV C; 2X6X A; 2QYU A; 4OJL A; 1RMG A; 1OGO X; 1O8H A; 2O0V A; 2V5I A; 1IDK A; 1XG2 A; 3BH7 B; 3ML3 A; 4W8Q A; 1K5C A; #chains in the Genus database with same CATH homology 1WXR A; 4V02 C; 2VFN A; 2XC1 A; 4OJ5 A; 4OJO A; 1TSP A; 1QA3 A; 2BM6 A; 4OJP A; 1QRB A; 2F3L A; 2G0Y A; 2IOU G; 1QQ1 A; 1QA1 A; 2BM7 A; 3H09 A; 1K8F A; 4JRA C; 4OPW A; 3RIQ A; 3JX8 A; 3BH6 B; 3SYJ A; 1QA2 A; 3N90 A; 1QRC A; 2BX6 A; 5JMC B; 3LJY A; 2BM4 A; 3N6Z A; 2J8I A; 2VFO A; 4OM9 A; 1TYU A; 2YUH A; 2W7Z A; 1TYV A; 1TYW A; 3SZE A; 3LYC A; 3P4G A; 2VFM A; 2B0R A; 2VFQ A; 1HF2 A; 4OJ6 A; 4KH3 A; 3PET A; 2VFP A; 5JLV C; 3AK5 A; 1K4Z A; 4OJL A; 1DAB A; 1CLW A; 2V5I A; 3BH7 B; 3ML3 A; 3TH0 A; 1KQ5 A; 2BM5 A; 1TYX A;
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