2O04A

Pectate lyase bound to hexasaccharide compound ii
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o04A00
1DBGA 1GQ8A 4YEJA 1EE6A 1O8JA 4NK8A 3JURA 1QCXA 2QXZA 1JTAA 1O8DA 4MXNA 1NHCA 1O88A 4OZYA 2BSPA 4OJ5A 3VMWA 3B4NA 3LMWA 1BHEA 2INVA 2Z8GA 2QX3A 2NTPA 2INUA 2PECA 1X0CA 1IA5A 1O8LA 2UVFA 4XN3A 3UW0A 1VBLA 2VJJA 3GQ8A 4XORA 1K5CA 2NTQA 4XL9A 2X6YA 2ODLA 1O8GA 1OFLA 1IDKA 4XR6A 3WWGA 3VSUA 2O0VA 2UVEA 4XLCA 4YZXA 1PE9A 4XLEA 1AIRA 1H80A 3FY3A 2EWEA 2O17A 4EW9A 2X3HA 3KRGA 2VJIA 1KCCA 4Z06A 1KCDA 1IDJA 4XLHA 1O8KA 4MR0A 2PYGA 2O04A 4AVZA 4HWVA 2X85A 4XKVA 4YZAA 1HG8A 3B8YA 3ZPPA 3VSTA 4W8SA 2VBKA 4I84A 4NK6A 5AMVA 1OOCA 4XONA 1PLUA 1O8EA 1O8IA 3VSVA 4C2LA 1QJVA 1IB4A 4W8TA 4W8QA 2NSPA 2NT9A 4OJPA 4YELA 1O8HA 4OJOA 1OGOX 4U4BA 1JRGA 3EQOA 2NTBA 1CZFA 3EQNA 2VBEA 3SUCA 2O1DA 3GRHA 2X6WA 2QY1A 3T9GA 5C1EA 4YZ0A 1DBOA 2VBMA 2O0WA 1OGMX 3VMVA 1KTWA 2NSTA 1O8MA 2NT6A 4OJ6A 3ZSCA 2X6XA 1OFMA 2IQ7A 1RMGA 2NZMA 3B90A 4XM3A 5C1CA 4Z05A 4XMYA 4XN0A 4YZQA 1XG2A 4U49A 1RWRA 4XKWA 1O8FA 4W8RA 3GQ9A 4OZZA 3GQ7A 1WMRA 4XNFA 4XOPA 3GQAA 4XLFA 1BN8A 4XOTA 1PXZA 2PYHA 4URRA 4XLAA 4Z03A 1RU4A 4XQFA 4PMHA 4OJLA
chains in the Genus database with same CATH superfamily
1KQ5A 1DBGA 1GQ8A 2IOUG 1EE6A 2VFNA 1O8JA 4NK8A 4YEJA 3JURA 1QCXA 2F3LA 2QXZA 3PSSA 1JTAA 3H09A 1EA0A 1O8DA 4MXNA 1NHCA 1O88A 4OZYA 2BSPA 3BH6B 1L1IA 3N90A 2J8KA 4OJ5A 3VMWA 3PETA 3B4NA 3LMWA 1BHEA 2INVA 3JX8A 3BH7B 2Z8GA 4YCQA 3SY2A 1QA1A 1WXRA 2BX6A 2NTPA 2INUA 2QX3A 2PECA 4OPWA 1X0CA 1IA5A 1O8LA 2UVFA 4XN3A 4V02C 3UW0A 1VBLA 2VJJA 3GQ8A 4KH3A 4XORA 1K5CA 4YFOA 2NTQA 4XL9A 2X6YA 2ODLA 2XTWA 1O8GA 1OFLA 2G0YA 1IDKA 4XR6A 1DABA 2B0RA 3VSUA 3WWGA 2O0VA 2UVEA 1LLWA 4XLCA 4YZXA 2VFPA 1PE9A 3NAWA 4XLEA 1AIRA 1H80A 3FY3A 2EWEA 3N6ZA 3SZEA 2O17A 4EW9A 2X3HA 3KRGA 2VJIA 1KCCA 1QA2A 4Z06A 1KCDA 1IDJA 4XLHA 1O8KA 1LLZA 4MR0A 2XTXA 2PYGA 2O04A 2W7ZA 4AVZA 4HWVA 1QRCA 2X85A 4XKVA 4YZAA 1HG8A 1LM1A 4YDTA 4YEIA 1QA3A 2QZAA 1TYWA 3B8YA 3ZPPA 3VSTA 4W8SA 2XTYA 2VBKA 2BM4A 4I84A 4NK6A 5AMVA 1OOCA 4XONA 1PLUA 1O8EA 1O8IA 1K4ZA 3VSVA 4C2LA 1QJVA 1IB4A 1EZGA 4W8TA 4W8QA 4OM9A 3LYCA 2NSPA 2NT9A 4OJPA 4YELA 2YUHA 1TYUA 1O8HA 3SQVA 4OJOA 1OGOX 4U4BA 1JRGA 3EQOA 1QQ1A 2NTBA 1CZFA 3NB2A 2XT4A 4YC5A 3EQNA 1TSPA 2VBEA 3SUCA 2O1DA 3GRHA 2X6WA 3PSZA 2BM6A 2QY1A 3T9GA 2V5IA 5C1EA 4YZ0A 1CLWA 1DBOA 2J8IA 2VBMA 5JLVC 2O0WA 1OGMX 3VMVA 5DNSA 1KTWA 1TYXA 1O8MA 2NSTA 2NT6A 1TYVA 2BM5A 4OJ6A 3ZSCA 2X6XA 2XT2A 3DU1X 1OFMA 1HF2A 1OFEA 2IQ7A 1RMGA 2NZMA 2O6WA 3RIQA 3B90A 3SYJA 4XM3A 5C1CA 4Z05A 4XMYA 2XC1A 5JMCB 4XN0A 4YZQA 1XG2A 4U49A 4JRAC 1RWRA 4XKWA 1O8FA 1K8FA 4W8RA 3GQ9A 2VFMA 4OZZA 3GQ7A 3P4GA 1WMRA 4XNFA 2QYUA 1OFDA 4XOPA 3TH0A 3GQAA 4XLFA 1BN8A 3LJYA 1PXZA 4XOTA 2BM7A 2PYHA 4URRA 4XLAA 3AK5A 1QRBA 4Z03A 1RU4A 3ML3A 4XQFA 4PMHA 2VFQA 4OJLA 2VFOA
chains in the Genus database with same CATH topology
1DBGA 1GQ8A 4YEJA 1EE6A 1O8JA 4NK8A 3JURA 1QCXA 2QXZA 1JTAA 1O8DA 4MXNA 1NHCA 1O88A 4OZYA 2BSPA 4OJ5A 3VMWA 3B4NA 3LMWA 1BHEA 2INVA 2Z8GA 2QX3A 2NTPA 2INUA 2PECA 1X0CA 1IA5A 1O8LA 2UVFA 4XN3A 3UW0A 1VBLA 2VJJA 3GQ8A 4XORA 1K5CA 2NTQA 4XL9A 2X6YA 2ODLA 1O8GA 1OFLA 1IDKA 4XR6A 3WWGA 3VSUA 2O0VA 2UVEA 4XLCA 4YZXA 1PE9A 4XLEA 1AIRA 1H80A 3FY3A 2EWEA 2O17A 4EW9A 2X3HA 3KRGA 2VJIA 1KCCA 4Z06A 1KCDA 1IDJA 4XLHA 1O8KA 4MR0A 2PYGA 2O04A 4AVZA 4HWVA 2X85A 4XKVA 4YZAA 1HG8A 3B8YA 3ZPPA 3VSTA 4W8SA 2VBKA 4I84A 4NK6A 5AMVA 1OOCA 4XONA 1PLUA 1O8EA 1O8IA 3VSVA 4C2LA 1QJVA 1IB4A 4W8TA 4W8QA 2NSPA 2NT9A 4OJPA 4YELA 1O8HA 4OJOA 1OGOX 4U4BA 1JRGA 3EQOA 2NTBA 1CZFA 3EQNA 2VBEA 3SUCA 2O1DA 3GRHA 2X6WA 2QY1A 3T9GA 5C1EA 4YZ0A 1DBOA 2VBMA 2O0WA 1OGMX 3VMVA 1KTWA 2NSTA 1O8MA 2NT6A 4OJ6A 3ZSCA 2X6XA 1OFMA 2IQ7A 1RMGA 2NZMA 3B90A 4XM3A 5C1CA 4Z05A 4XMYA 4XN0A 4YZQA 1XG2A 4U49A 1RWRA 4XKWA 1O8FA 4W8RA 3GQ9A 4OZZA 3GQ7A 1WMRA 4XNFA 4XOPA 3GQAA 4XLFA 1BN8A 4XOTA 1PXZA 2PYHA 4URRA 4XLAA 4Z03A 1RU4A 4XQFA 4PMHA 4OJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DBG A;  1GQ8 A;  4YEJ A;  1EE6 A;  1O8J A;  4NK8 A;  3JUR A;  1QCX A;  2QXZ A;  1JTA A;  1O8D A;  4MXN A;  1NHC A;  1O88 A;  4OZY A;  2BSP A;  4OJ5 A;  3VMW A;  3B4N A;  3LMW A;  1BHE A;  2INV A;  2Z8G A;  2QX3 A;  2NTP A;  2INU A;  2PEC A;  1X0C A;  1IA5 A;  1O8L A;  2UVF A;  4XN3 A;  3UW0 A;  1VBL A;  2VJJ A;  3GQ8 A;  4XOR A;  1K5C A;  2NTQ A;  4XL9 A;  2X6Y A;  2ODL A;  1O8G A;  1OFL A;  1IDK A;  4XR6 A;  3WWG A;  3VSU A;  2O0V A;  2UVE A;  4XLC A;  4YZX A;  1PE9 A;  4XLE A;  1AIR A;  1H80 A;  3FY3 A;  2EWE A;  2O17 A;  4EW9 A;  2X3H A;  3KRG A;  2VJI A;  1KCC A;  4Z06 A;  1KCD A;  1IDJ A;  4XLH A;  1O8K A;  4MR0 A;  2PYG A;  2O04 A;  4AVZ A;  4HWV A;  2X85 A;  4XKV A;  4YZA A;  1HG8 A;  3B8Y A;  3ZPP A;  3VST A;  4W8S A;  2VBK A;  4I84 A;  4NK6 A;  5AMV A;  1OOC A;  4XON A;  1PLU A;  1O8E A;  1O8I A;  3VSV A;  4C2L A;  1QJV A;  1IB4 A;  4W8T A;  4W8Q A;  2NSP A;  2NT9 A;  4OJP A;  4YEL A;  1O8H A;  4OJO A;  1OGO X;  4U4B A;  1JRG A;  3EQO A;  2NTB A;  1CZF A;  3EQN A;  2VBE A;  3SUC A;  2O1D A;  3GRH A;  2X6W A;  2QY1 A;  3T9G A;  5C1E A;  4YZ0 A;  1DBO A;  2VBM A;  2O0W A;  1OGM X;  3VMV A;  1KTW A;  2NST A;  1O8M A;  2NT6 A;  4OJ6 A;  3ZSC A;  2X6X A;  1OFM A;  2IQ7 A;  1RMG A;  2NZM A;  3B90 A;  4XM3 A;  5C1C A;  4Z05 A;  4XMY A;  4XN0 A;  4YZQ A;  1XG2 A;  4U49 A;  1RWR A;  4XKW A;  1O8F A;  4W8R A;  3GQ9 A;  4OZZ A;  3GQ7 A;  1WMR A;  4XNF A;  4XOP A;  3GQA A;  4XLF A;  1BN8 A;  4XOT A;  1PXZ A;  2PYH A;  4URR A;  4XLA A;  4Z03 A;  1RU4 A;  4XQF A;  4PMH A;  4OJL A; 
#chains in the Genus database with same CATH topology
 1KQ5 A;  1DBG A;  1GQ8 A;  2IOU G;  1EE6 A;  2VFN A;  1O8J A;  4NK8 A;  4YEJ A;  3JUR A;  1QCX A;  2F3L A;  2QXZ A;  3PSS A;  1JTA A;  3H09 A;  1EA0 A;  1O8D A;  4MXN A;  1NHC A;  1O88 A;  4OZY A;  2BSP A;  3BH6 B;  1L1I A;  3N90 A;  2J8K A;  4OJ5 A;  3VMW A;  3PET A;  3B4N A;  3LMW A;  1BHE A;  2INV A;  3JX8 A;  3BH7 B;  2Z8G A;  4YCQ A;  3SY2 A;  1QA1 A;  1WXR A;  2BX6 A;  2NTP A;  2INU A;  2QX3 A;  2PEC A;  4OPW A;  1X0C A;  1IA5 A;  1O8L A;  2UVF A;  4XN3 A;  4V02 C;  3UW0 A;  1VBL A;  2VJJ A;  3GQ8 A;  4KH3 A;  4XOR A;  1K5C A;  4YFO A;  2NTQ A;  4XL9 A;  2X6Y A;  2ODL A;  2XTW A;  1O8G A;  1OFL A;  2G0Y A;  1IDK A;  4XR6 A;  1DAB A;  2B0R A;  3VSU A;  3WWG A;  2O0V A;  2UVE A;  1LLW A;  4XLC A;  4YZX A;  2VFP A;  1PE9 A;  3NAW A;  4XLE A;  1AIR A;  1H80 A;  3FY3 A;  2EWE A;  3N6Z A;  3SZE A;  2O17 A;  4EW9 A;  2X3H A;  3KRG A;  2VJI A;  1KCC A;  1QA2 A;  4Z06 A;  1KCD A;  1IDJ A;  4XLH A;  1O8K A;  1LLZ A;  4MR0 A;  2XTX A;  2PYG A;  2O04 A;  2W7Z A;  4AVZ A;  4HWV A;  1QRC A;  2X85 A;  4XKV A;  4YZA A;  1HG8 A;  1LM1 A;  4YDT A;  4YEI A;  1QA3 A;  2QZA A;  1TYW A;  3B8Y A;  3ZPP A;  3VST A;  4W8S A;  2XTY A;  2VBK A;  2BM4 A;  4I84 A;  4NK6 A;  5AMV A;  1OOC A;  4XON A;  1PLU A;  1O8E A;  1O8I A;  1K4Z A;  3VSV A;  4C2L A;  1QJV A;  1IB4 A;  1EZG A;  4W8T A;  4W8Q A;  4OM9 A;  3LYC A;  2NSP A;  2NT9 A;  4OJP A;  4YEL A;  2YUH A;  1TYU A;  1O8H A;  3SQV A;  4OJO A;  1OGO X;  4U4B A;  1JRG A;  3EQO A;  1QQ1 A;  2NTB A;  1CZF A;  3NB2 A;  2XT4 A;  4YC5 A;  3EQN A;  1TSP A;  2VBE A;  3SUC A;  2O1D A;  3GRH A;  2X6W A;  3PSZ A;  2BM6 A;  2QY1 A;  3T9G A;  2V5I A;  5C1E A;  4YZ0 A;  1CLW A;  1DBO A;  2J8I A;  2VBM A;  5JLV C;  2O0W A;  1OGM X;  3VMV A;  5DNS A;  1KTW A;  1TYX A;  1O8M A;  2NST A;  2NT6 A;  1TYV A;  2BM5 A;  4OJ6 A;  3ZSC A;  2X6X A;  2XT2 A;  3DU1 X;  1OFM A;  1HF2 A;  1OFE A;  2IQ7 A;  1RMG A;  2NZM A;  2O6W A;  3RIQ A;  3B90 A;  3SYJ A;  4XM3 A;  5C1C A;  4Z05 A;  4XMY A;  2XC1 A;  5JMC B;  4XN0 A;  4YZQ A;  1XG2 A;  4U49 A;  4JRA C;  1RWR A;  4XKW A;  1O8F A;  1K8F A;  4W8R A;  3GQ9 A;  2VFM A;  4OZZ A;  3GQ7 A;  3P4G A;  1WMR A;  4XNF A;  2QYU A;  1OFD A;  4XOP A;  3TH0 A;  3GQA A;  4XLF A;  1BN8 A;  3LJY A;  1PXZ A;  4XOT A;  2BM7 A;  2PYH A;  4URR A;  4XLA A;  3AK5 A;  1QRB A;  4Z03 A;  1RU4 A;  3ML3 A;  4XQF A;  4PMH A;  2VFQ A;  4OJL A;  2VFO A; 
#chains in the Genus database with same CATH homology
 1DBG A;  1GQ8 A;  4YEJ A;  1EE6 A;  1O8J A;  4NK8 A;  3JUR A;  1QCX A;  2QXZ A;  1JTA A;  1O8D A;  4MXN A;  1NHC A;  1O88 A;  4OZY A;  2BSP A;  4OJ5 A;  3VMW A;  3B4N A;  3LMW A;  1BHE A;  2INV A;  2Z8G A;  2QX3 A;  2NTP A;  2INU A;  2PEC A;  1X0C A;  1IA5 A;  1O8L A;  2UVF A;  4XN3 A;  3UW0 A;  1VBL A;  2VJJ A;  3GQ8 A;  4XOR A;  1K5C A;  2NTQ A;  4XL9 A;  2X6Y A;  2ODL A;  1O8G A;  1OFL A;  1IDK A;  4XR6 A;  3WWG A;  3VSU A;  2O0V A;  2UVE A;  4XLC A;  4YZX A;  1PE9 A;  4XLE A;  1AIR A;  1H80 A;  3FY3 A;  2EWE A;  2O17 A;  4EW9 A;  2X3H A;  3KRG A;  2VJI A;  1KCC A;  4Z06 A;  1KCD A;  1IDJ A;  4XLH A;  1O8K A;  4MR0 A;  2PYG A;  2O04 A;  4AVZ A;  4HWV A;  2X85 A;  4XKV A;  4YZA A;  1HG8 A;  3B8Y A;  3ZPP A;  3VST A;  4W8S A;  2VBK A;  4I84 A;  4NK6 A;  5AMV A;  1OOC A;  4XON A;  1PLU A;  1O8E A;  1O8I A;  3VSV A;  4C2L A;  1QJV A;  1IB4 A;  4W8T A;  4W8Q A;  2NSP A;  2NT9 A;  4OJP A;  4YEL A;  1O8H A;  4OJO A;  1OGO X;  4U4B A;  1JRG A;  3EQO A;  2NTB A;  1CZF A;  3EQN A;  2VBE A;  3SUC A;  2O1D A;  3GRH A;  2X6W A;  2QY1 A;  3T9G A;  5C1E A;  4YZ0 A;  1DBO A;  2VBM A;  2O0W A;  1OGM X;  3VMV A;  1KTW A;  2NST A;  1O8M A;  2NT6 A;  4OJ6 A;  3ZSC A;  2X6X A;  1OFM A;  2IQ7 A;  1RMG A;  2NZM A;  3B90 A;  4XM3 A;  5C1C A;  4Z05 A;  4XMY A;  4XN0 A;  4YZQ A;  1XG2 A;  4U49 A;  1RWR A;  4XKW A;  1O8F A;  4W8R A;  3GQ9 A;  4OZZ A;  3GQ7 A;  1WMR A;  4XNF A;  4XOP A;  3GQA A;  4XLF A;  1BN8 A;  4XOT A;  1PXZ A;  2PYH A;  4URR A;  4XLA A;  4Z03 A;  1RU4 A;  4XQF A;  4PMH A;  4OJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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