2O04A

Pectate lyase bound to hexasaccharide compound ii
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o04A00
1IA5A 4YELA 3ZPPA 1VBLA 1IDKA 4W8QA 1KCDA 2NTBA 4Z03A 1DBGA 2UVFA 4YEJA 1HG8A 4XN0A 4OJLA 1PXZA 3VSUA 1NHCA 1KCCA 1O8GA 1QJVA 1H80A 3ZSCA 2INVA 1O8KA 4OJ6A 2ODLA 4MR0A 4XR6A 4XN3A 2O04A 3KRGA 4YZXA 3VSTA 4U49A 4YZQA 4YZAA 2VJJA 5AMVA 2BSPA 2PYGA 2NSTA 4U4BA 2NTQA 3T9GA 4XLFA 2X6WA 2IQ7A 2X85A 3EQNA 2QXZA 3VSVA 4AVZA 1OOCA 2VBEA 4XMYA 3VMVA 2X3HA 4HWVA 2QX3A 2NT9A 4I84A 3B90A 4XLCA 4C2LA 1XG2A 3UW0A 2VJIA 3VMWA 4XLEA 3FY3A 4Z05A 4OJOA 2X6YA 3LMWA 1OGMX 4PMHA 4OZYA 1BN8A 3GQ9A 3SUCA 1BHEA 3GRHA 2UVEA 1O8HA 1PLUA 2X6XA 1O8LA 1X0CA 3JURA 4XLAA 4URRA 3WWGA 1RWRA 1OGOX 4XORA 1DBOA 1OFMA 1O8EA 2QY1A 2VBMA 1IB4A 1EE6A 4NK6A 4OZZA 4W8TA 2PYHA 1K5CA 4NK8A 4MXNA 2PECA 2EWEA 1GQ8A 1RU4A 1AIRA 1O8JA 1O88A 1OFLA 1WMRA 1JTAA 2NSPA 2O0VA 1CZFA 1KTWA 1PE9A 2NTPA 1O8IA 1O8FA 4XONA 4YZ0A 1O8MA 4XOPA 2VBKA 4XQFA 3GQ7A 3B8YA 3EQOA 1QCXA 2NT6A 4XOTA 4EW9A 2O0WA 4XKVA 2O17A 4W8SA 1IDJA 3B4NA 4W8RA 4OJ5A 5C1CA 4XKWA 2O1DA 4XM3A 3GQAA 2INUA 4XLHA 4Z06A 2NZMA 2Z8GA 3GQ8A 5C1EA 4XNFA 4OJPA 1RMGA 1JRGA 1O8DA 4XL9A
chains in the Genus database with same CATH superfamily
1EA0A 1IA5A 4YELA 3ZPPA 3RIQA 1LLZA 1VBLA 1IDKA 1K8FA 4W8QA 1KCDA 2NTBA 2VFQA 4Z03A 3AK5A 1DBGA 3NB2A 1TYUA 2UVFA 3SYJA 4YEJA 1HG8A 2QYUA 4XN0A 4YDTA 3SQVA 4OJLA 1PXZA 4OM9A 3VSUA 1NHCA 1KCCA 1O8GA 1QJVA 1H80A 3ZSCA 2INVA 1O8KA 4OJ6A 1QA3A 2BM7A 2ODLA 4MR0A 3DU1X 2VFOA 4XR6A 4XN3A 2O04A 3KRGA 4YZXA 3VSTA 3BH6B 1TYVA 4U49A 4YZQA 4YZAA 2VJJA 5AMVA 2BSPA 2PYGA 2NSTA 2BM5A 4U4BA 2XTYA 2O6WA 3N6ZA 3LJYA 2NTQA 5DNSA 3T9GA 4XLFA 2X6WA 2IQ7A 2X85A 3EQNA 2J8KA 2QXZA 3VSVA 1OFEA 1QA2A 4AVZA 1OOCA 2VBEA 2VFMA 3SY2A 4XMYA 2W7ZA 3VMVA 1LLWA 2X3HA 4HWVA 2QX3A 3TH0A 2NT9A 2XT4A 3B90A 3N90A 4I84A 4XLCA 4C2LA 1L1IA 1XG2A 2XC1A 2VJIA 3UW0A 3VMWA 4XLEA 3FY3A 2QZAA 4Z05A 4OJOA 3SZEA 3H09A 2X6YA 3LMWA 2VFNA 3BH7B 1OGMX 4PMHA 1EZGA 1BN8A 4OZYA 3GQ9A 1HF2A 4KH3A 3SUCA 3PSZA 1BHEA 2XTXA 3P4GA 3GRHA 2UVEA 3JX8A 1O8HA 1PLUA 2X6XA 1O8LA 1X0CA 3LYCA 3JURA 3PSSA 1LM1A 4XLAA 4URRA 3WWGA 1RWRA 1OGOX 4XORA 3PETA 1QA1A 1WXRA 1DBOA 1OFMA 1O8EA 2QY1A 2VBMA 1IB4A 1EE6A 4NK6A 4OZZA 4W8TA 2PYHA 1K5CA 4NK8A 4MXNA 2PECA 5JLVC 2BX6A 2BM6A 2EWEA 1GQ8A 1RU4A 1AIRA 1O8JA 1O88A 1OFLA 1WMRA 1JTAA 2NSPA 2O0VA 2XTWA 1CZFA 3NAWA 3ML3A 1KTWA 1QRBA 1PE9A 2NTPA 1TSPA 4YFOA 1O8IA 1O8FA 4XONA 4YZ0A 1O8MA 4XOPA 4YCQA 1KQ5A 2VBKA 2V5IA 3GQ7A 4XQFA 1QRCA 3B8YA 2IOUG 2BM4A 3EQOA 1QCXA 2NT6A 1CLWA 4XOTA 4EW9A 2O0WA 4XKVA 2O17A 1TYXA 4W8SA 1IDJA 4OPWA 3B4NA 2G0YA 4W8RA 1OFDA 4OJ5A 2YUHA 2J8IA 5C1CA 4JRAC 2VFPA 4XKWA 2O1DA 2B0RA 4YC5A 4XM3A 3GQAA 2INUA 2F3LA 1K4ZA 4XLHA 4Z06A 2NZMA 2Z8GA 3GQ8A 5C1EA 4XNFA 4OJPA 1DABA 2XT2A 4V02C 1RMGA 1JRGA 1TYWA 1O8DA 4XL9A 4YEIA 1QQ1A 5JMCB
chains in the Genus database with same CATH topology
1IA5A 4YELA 3ZPPA 1VBLA 1IDKA 4W8QA 1KCDA 2NTBA 4Z03A 1DBGA 2UVFA 4YEJA 1HG8A 4XN0A 4OJLA 1PXZA 3VSUA 1NHCA 1KCCA 1O8GA 1QJVA 1H80A 3ZSCA 2INVA 1O8KA 4OJ6A 2ODLA 4MR0A 4XR6A 4XN3A 2O04A 3KRGA 4YZXA 3VSTA 4U49A 4YZQA 4YZAA 2VJJA 5AMVA 2BSPA 2PYGA 2NSTA 4U4BA 2NTQA 3T9GA 4XLFA 2X6WA 2IQ7A 2X85A 3EQNA 2QXZA 3VSVA 4AVZA 1OOCA 2VBEA 4XMYA 3VMVA 2X3HA 4HWVA 2QX3A 2NT9A 4I84A 3B90A 4XLCA 4C2LA 1XG2A 3UW0A 2VJIA 3VMWA 4XLEA 3FY3A 4Z05A 4OJOA 2X6YA 3LMWA 1OGMX 4PMHA 4OZYA 1BN8A 3GQ9A 3SUCA 1BHEA 3GRHA 2UVEA 1O8HA 1PLUA 2X6XA 1O8LA 1X0CA 3JURA 4XLAA 4URRA 3WWGA 1RWRA 1OGOX 4XORA 1DBOA 1OFMA 1O8EA 2QY1A 2VBMA 1IB4A 1EE6A 4NK6A 4OZZA 4W8TA 2PYHA 1K5CA 4NK8A 4MXNA 2PECA 2EWEA 1GQ8A 1RU4A 1AIRA 1O8JA 1O88A 1OFLA 1WMRA 1JTAA 2NSPA 2O0VA 1CZFA 1KTWA 1PE9A 2NTPA 1O8IA 1O8FA 4XONA 4YZ0A 1O8MA 4XOPA 2VBKA 4XQFA 3GQ7A 3B8YA 3EQOA 1QCXA 2NT6A 4XOTA 4EW9A 2O0WA 4XKVA 2O17A 4W8SA 1IDJA 3B4NA 4W8RA 4OJ5A 5C1CA 4XKWA 2O1DA 4XM3A 3GQAA 2INUA 4XLHA 4Z06A 2NZMA 2Z8GA 3GQ8A 5C1EA 4XNFA 4OJPA 1RMGA 1JRGA 1O8DA 4XL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IA5 A;  4YEL A;  3ZPP A;  1VBL A;  1IDK A;  4W8Q A;  1KCD A;  2NTB A;  4Z03 A;  1DBG A;  2UVF A;  4YEJ A;  1HG8 A;  4XN0 A;  4OJL A;  1PXZ A;  3VSU A;  1NHC A;  1KCC A;  1O8G A;  1QJV A;  1H80 A;  3ZSC A;  2INV A;  1O8K A;  4OJ6 A;  2ODL A;  4MR0 A;  4XR6 A;  4XN3 A;  2O04 A;  3KRG A;  4YZX A;  3VST A;  4U49 A;  4YZQ A;  4YZA A;  2VJJ A;  5AMV A;  2BSP A;  2PYG A;  2NST A;  4U4B A;  2NTQ A;  3T9G A;  4XLF A;  2X6W A;  2IQ7 A;  2X85 A;  3EQN A;  2QXZ A;  3VSV A;  4AVZ A;  1OOC A;  2VBE A;  4XMY A;  3VMV A;  2X3H A;  4HWV A;  2QX3 A;  2NT9 A;  4I84 A;  3B90 A;  4XLC A;  4C2L A;  1XG2 A;  3UW0 A;  2VJI A;  3VMW A;  4XLE A;  3FY3 A;  4Z05 A;  4OJO A;  2X6Y A;  3LMW A;  1OGM X;  4PMH A;  4OZY A;  1BN8 A;  3GQ9 A;  3SUC A;  1BHE A;  3GRH A;  2UVE A;  1O8H A;  1PLU A;  2X6X A;  1O8L A;  1X0C A;  3JUR A;  4XLA A;  4URR A;  3WWG A;  1RWR A;  1OGO X;  4XOR A;  1DBO A;  1OFM A;  1O8E A;  2QY1 A;  2VBM A;  1IB4 A;  1EE6 A;  4NK6 A;  4OZZ A;  4W8T A;  2PYH A;  1K5C A;  4NK8 A;  4MXN A;  2PEC A;  2EWE A;  1GQ8 A;  1RU4 A;  1AIR A;  1O8J A;  1O88 A;  1OFL A;  1WMR A;  1JTA A;  2NSP A;  2O0V A;  1CZF A;  1KTW A;  1PE9 A;  2NTP A;  1O8I A;  1O8F A;  4XON A;  4YZ0 A;  1O8M A;  4XOP A;  2VBK A;  4XQF A;  3GQ7 A;  3B8Y A;  3EQO A;  1QCX A;  2NT6 A;  4XOT A;  4EW9 A;  2O0W A;  4XKV A;  2O17 A;  4W8S A;  1IDJ A;  3B4N A;  4W8R A;  4OJ5 A;  5C1C A;  4XKW A;  2O1D A;  4XM3 A;  3GQA A;  2INU A;  4XLH A;  4Z06 A;  2NZM A;  2Z8G A;  3GQ8 A;  5C1E A;  4XNF A;  4OJP A;  1RMG A;  1JRG A;  1O8D A;  4XL9 A; 
#chains in the Genus database with same CATH topology
 1EA0 A;  1IA5 A;  4YEL A;  3ZPP A;  3RIQ A;  1LLZ A;  1VBL A;  1IDK A;  1K8F A;  4W8Q A;  1KCD A;  2NTB A;  2VFQ A;  4Z03 A;  3AK5 A;  1DBG A;  3NB2 A;  1TYU A;  2UVF A;  3SYJ A;  4YEJ A;  1HG8 A;  2QYU A;  4XN0 A;  4YDT A;  3SQV A;  4OJL A;  1PXZ A;  4OM9 A;  3VSU A;  1NHC A;  1KCC A;  1O8G A;  1QJV A;  1H80 A;  3ZSC A;  2INV A;  1O8K A;  4OJ6 A;  1QA3 A;  2BM7 A;  2ODL A;  4MR0 A;  3DU1 X;  2VFO A;  4XR6 A;  4XN3 A;  2O04 A;  3KRG A;  4YZX A;  3VST A;  3BH6 B;  1TYV A;  4U49 A;  4YZQ A;  4YZA A;  2VJJ A;  5AMV A;  2BSP A;  2PYG A;  2NST A;  2BM5 A;  4U4B A;  2XTY A;  2O6W A;  3N6Z A;  3LJY A;  2NTQ A;  5DNS A;  3T9G A;  4XLF A;  2X6W A;  2IQ7 A;  2X85 A;  3EQN A;  2J8K A;  2QXZ A;  3VSV A;  1OFE A;  1QA2 A;  4AVZ A;  1OOC A;  2VBE A;  2VFM A;  3SY2 A;  4XMY A;  2W7Z A;  3VMV A;  1LLW A;  2X3H A;  4HWV A;  2QX3 A;  3TH0 A;  2NT9 A;  2XT4 A;  3B90 A;  3N90 A;  4I84 A;  4XLC A;  4C2L A;  1L1I A;  1XG2 A;  2XC1 A;  2VJI A;  3UW0 A;  3VMW A;  4XLE A;  3FY3 A;  2QZA A;  4Z05 A;  4OJO A;  3SZE A;  3H09 A;  2X6Y A;  3LMW A;  2VFN A;  3BH7 B;  1OGM X;  4PMH A;  1EZG A;  1BN8 A;  4OZY A;  3GQ9 A;  1HF2 A;  4KH3 A;  3SUC A;  3PSZ A;  1BHE A;  2XTX A;  3P4G A;  3GRH A;  2UVE A;  3JX8 A;  1O8H A;  1PLU A;  2X6X A;  1O8L A;  1X0C A;  3LYC A;  3JUR A;  3PSS A;  1LM1 A;  4XLA A;  4URR A;  3WWG A;  1RWR A;  1OGO X;  4XOR A;  3PET A;  1QA1 A;  1WXR A;  1DBO A;  1OFM A;  1O8E A;  2QY1 A;  2VBM A;  1IB4 A;  1EE6 A;  4NK6 A;  4OZZ A;  4W8T A;  2PYH A;  1K5C A;  4NK8 A;  4MXN A;  2PEC A;  5JLV C;  2BX6 A;  2BM6 A;  2EWE A;  1GQ8 A;  1RU4 A;  1AIR A;  1O8J A;  1O88 A;  1OFL A;  1WMR A;  1JTA A;  2NSP A;  2O0V A;  2XTW A;  1CZF A;  3NAW A;  3ML3 A;  1KTW A;  1QRB A;  1PE9 A;  2NTP A;  1TSP A;  4YFO A;  1O8I A;  1O8F A;  4XON A;  4YZ0 A;  1O8M A;  4XOP A;  4YCQ A;  1KQ5 A;  2VBK A;  2V5I A;  3GQ7 A;  4XQF A;  1QRC A;  3B8Y A;  2IOU G;  2BM4 A;  3EQO A;  1QCX A;  2NT6 A;  1CLW A;  4XOT A;  4EW9 A;  2O0W A;  4XKV A;  2O17 A;  1TYX A;  4W8S A;  1IDJ A;  4OPW A;  3B4N A;  2G0Y A;  4W8R A;  1OFD A;  4OJ5 A;  2YUH A;  2J8I A;  5C1C A;  4JRA C;  2VFP A;  4XKW A;  2O1D A;  2B0R A;  4YC5 A;  4XM3 A;  3GQA A;  2INU A;  2F3L A;  1K4Z A;  4XLH A;  4Z06 A;  2NZM A;  2Z8G A;  3GQ8 A;  5C1E A;  4XNF A;  4OJP A;  1DAB A;  2XT2 A;  4V02 C;  1RMG A;  1JRG A;  1TYW A;  1O8D A;  4XL9 A;  4YEI A;  1QQ1 A;  5JMC B; 
#chains in the Genus database with same CATH homology
 1IA5 A;  4YEL A;  3ZPP A;  1VBL A;  1IDK A;  4W8Q A;  1KCD A;  2NTB A;  4Z03 A;  1DBG A;  2UVF A;  4YEJ A;  1HG8 A;  4XN0 A;  4OJL A;  1PXZ A;  3VSU A;  1NHC A;  1KCC A;  1O8G A;  1QJV A;  1H80 A;  3ZSC A;  2INV A;  1O8K A;  4OJ6 A;  2ODL A;  4MR0 A;  4XR6 A;  4XN3 A;  2O04 A;  3KRG A;  4YZX A;  3VST A;  4U49 A;  4YZQ A;  4YZA A;  2VJJ A;  5AMV A;  2BSP A;  2PYG A;  2NST A;  4U4B A;  2NTQ A;  3T9G A;  4XLF A;  2X6W A;  2IQ7 A;  2X85 A;  3EQN A;  2QXZ A;  3VSV A;  4AVZ A;  1OOC A;  2VBE A;  4XMY A;  3VMV A;  2X3H A;  4HWV A;  2QX3 A;  2NT9 A;  4I84 A;  3B90 A;  4XLC A;  4C2L A;  1XG2 A;  3UW0 A;  2VJI A;  3VMW A;  4XLE A;  3FY3 A;  4Z05 A;  4OJO A;  2X6Y A;  3LMW A;  1OGM X;  4PMH A;  4OZY A;  1BN8 A;  3GQ9 A;  3SUC A;  1BHE A;  3GRH A;  2UVE A;  1O8H A;  1PLU A;  2X6X A;  1O8L A;  1X0C A;  3JUR A;  4XLA A;  4URR A;  3WWG A;  1RWR A;  1OGO X;  4XOR A;  1DBO A;  1OFM A;  1O8E A;  2QY1 A;  2VBM A;  1IB4 A;  1EE6 A;  4NK6 A;  4OZZ A;  4W8T A;  2PYH A;  1K5C A;  4NK8 A;  4MXN A;  2PEC A;  2EWE A;  1GQ8 A;  1RU4 A;  1AIR A;  1O8J A;  1O88 A;  1OFL A;  1WMR A;  1JTA A;  2NSP A;  2O0V A;  1CZF A;  1KTW A;  1PE9 A;  2NTP A;  1O8I A;  1O8F A;  4XON A;  4YZ0 A;  1O8M A;  4XOP A;  2VBK A;  4XQF A;  3GQ7 A;  3B8Y A;  3EQO A;  1QCX A;  2NT6 A;  4XOT A;  4EW9 A;  2O0W A;  4XKV A;  2O17 A;  4W8S A;  1IDJ A;  3B4N A;  4W8R A;  4OJ5 A;  5C1C A;  4XKW A;  2O1D A;  4XM3 A;  3GQA A;  2INU A;  4XLH A;  4Z06 A;  2NZM A;  2Z8G A;  3GQ8 A;  5C1E A;  4XNF A;  4OJP A;  1RMG A;  1JRG A;  1O8D A;  4XL9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...