2O04A

Pectate lyase bound to hexasaccharide compound ii
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Bacillus subtilis
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o04A00
1O8DA 3GQAA 2VBEA 4AVZA 4MXNA 2O0WA 4XKWA 1JRGA 4Z06A 2NZMA 4NK8A 2PYHA 1KTWA 1IDKA 1CZFA 2O04A 4PMHA 1H80A 2X85A 3GQ9A 4XONA 1AIRA 1OGMX 2O1DA 1O8HA 1PXZA 4XNFA 2O0VA 1KCDA 4XL9A 3SUCA 4XORA 2QX3A 1IDJA 4MR0A 3GQ7A 1DBGA 4W8SA 3T9GA 1QJVA 3VSVA 2VBKA 1O8KA 4YEJA 2X6YA 1O8IA 4Z03A 1BHEA 1O8MA 2X6WA 2NT9A 2PECA 4C2LA 3B4NA 4W8RA 1O88A 1K5CA 1QCXA 4NK6A 5AMVA 2QXZA 2UVFA 2BSPA 1PE9A 2NT6A 1X0CA 4XKVA 4XOTA 4OJPA 2INVA 2Z8GA 4XR6A 5C1EA 4OJLA 3GRHA 2QY1A 2VJJA 4OZYA 4XOPA 4U4BA 3B8YA 4OJ6A 4XLCA 1OGOX 4OJ5A 2INUA 1IA5A 3UW0A 2NSTA 4XMYA 4XLHA 1O8LA 1NHCA 1OOCA 1EE6A 3ZPPA 3JURA 2NSPA 1XG2A 4W8QA 3B90A 3KRGA 2X3HA 4YZ0A 4U49A 1PLUA 2NTQA 4Z05A 1OFLA 4XLFA 2PYGA 2X6XA 2IQ7A 4W8TA 1O8FA 4YZXA 1OFMA 2NTPA 4URRA 5C1CA 1RWRA 4XM3A 1O8JA 4XN3A 3VMVA 1RU4A 4YELA 1BN8A 4YZAA 3EQNA 4HWVA 1JTAA 4OZZA 1DBOA 3WWGA 1O8GA 1RMGA 2UVEA 3EQOA 2ODLA 4XLAA 3ZSCA 4EW9A 1O8EA 4XQFA 1IB4A 4XN0A 1KCCA 3VMWA 4I84A 2O17A 1HG8A 3FY3A 3LMWA 1GQ8A 4XLEA 3VSTA 2EWEA 4YZQA 2VBMA 2NTBA 4OJOA 2VJIA 1WMRA 1VBLA 3VSUA 3GQ8A
chains in the Genus database with same CATH superfamily
1O8DA 2J8IA 2VBEA 3GQAA 1OFDA 2O0WA 3LYCA 3N90A 4MXNA 4XKWA 4AVZA 3JX8A 1JRGA 4Z06A 2NZMA 3PSSA 4NK8A 2IOUG 2G0YA 2PYHA 3P4GA 1KTWA 1QA3A 2BM7A 1IDKA 1CZFA 2O04A 4V02C 4PMHA 3LJYA 4YDTA 1H80A 2XT2A 4KH3A 2X85A 3GQ9A 4XONA 1AIRA 1OGMX 2O1DA 1O8HA 1PXZA 1TYWA 4XNFA 1WXRA 1LM1A 2VFPA 2O0VA 1KCDA 4XL9A 3SUCA 4XORA 2QX3A 1IDJA 4MR0A 3GQ7A 1DBGA 4W8SA 3T9GA 1QJVA 3VSVA 1QA1A 2VBKA 1EZGA 1O8KA 4YEJA 2X6YA 1O8IA 4Z03A 1QA2A 1BHEA 1O8MA 2X6WA 2NT9A 2PECA 4C2LA 3B4NA 4W8RA 1O88A 2QYUA 1K5CA 1QCXA 1TYVA 1TYUA 4NK6A 5AMVA 1QQ1A 2XTYA 2QXZA 2UVFA 2BSPA 2BM6A 2VFOA 1PE9A 2NT6A 3BH6B 3N6ZA 1HF2A 1K4ZA 3TH0A 4OM9A 1X0CA 2O6WA 4XKVA 4XOTA 2V5IA 3DU1X 2INVA 4OJPA 2Z8GA 4XR6A 5C1EA 4OJLA 3NAWA 3GRHA 1KQ5A 1LLWA 4JRAC 1L1IA 2QY1A 2VJJA 4OZYA 4XOPA 1TYXA 4U4BA 3B8YA 4OJ6A 4XLCA 3SY2A 1OGOX 4OJ5A 5JLVC 2B0RA 2INUA 2VFMA 1IA5A 3UW0A 2NSTA 4XMYA 2BM4A 4XLHA 1O8LA 1NHCA 1OOCA 1EE6A 3ZPPA 3JURA 1DABA 2NSPA 3SZEA 4YCQA 1XG2A 4W8QA 3H09A 3B90A 3KRGA 3ML3A 2QZAA 2X3HA 4YZ0A 4U49A 1PLUA 2NTQA 4YC5A 4Z05A 1OFLA 4YFOA 4XLFA 3SYJA 2PYGA 4OPWA 2W7ZA 2X6XA 2IQ7A 2XTXA 1QRCA 4W8TA 4YEIA 1O8FA 4YZXA 5JMCB 2VFNA 1OFMA 2NTPA 4URRA 3RIQA 5C1CA 1RWRA 4XM3A 1O8JA 3PETA 2XC1A 2F3LA 4XN3A 3VMVA 1RU4A 3NB2A 1TSPA 3BH7B 5DNSA 2VFQA 4YELA 1BN8A 4YZAA 3EQNA 1OFEA 1JTAA 4HWVA 4OZZA 3AK5A 1EA0A 1DBOA 2BX6A 3WWGA 1O8GA 2YUHA 1RMGA 2UVEA 3EQOA 2ODLA 4XLAA 3ZSCA 2BM5A 4EW9A 1O8EA 4XQFA 1IB4A 4XN0A 2XTWA 1KCCA 3VMWA 4I84A 2O17A 1HG8A 3FY3A 3LMWA 1GQ8A 4XLEA 2J8KA 1LLZA 1CLWA 2XT4A 3VSTA 2EWEA 4YZQA 2VBMA 1K8FA 1QRBA 2NTBA 4OJOA 2VJIA 1WMRA 3SQVA 3PSZA 1VBLA 3VSUA 3GQ8A
chains in the Genus database with same CATH topology
1O8DA 3GQAA 2VBEA 4AVZA 4MXNA 2O0WA 4XKWA 1JRGA 4Z06A 2NZMA 4NK8A 2PYHA 1KTWA 1IDKA 1CZFA 2O04A 4PMHA 1H80A 2X85A 3GQ9A 4XONA 1AIRA 1OGMX 2O1DA 1O8HA 1PXZA 4XNFA 2O0VA 1KCDA 4XL9A 3SUCA 4XORA 2QX3A 1IDJA 4MR0A 3GQ7A 1DBGA 4W8SA 3T9GA 1QJVA 3VSVA 2VBKA 1O8KA 4YEJA 2X6YA 1O8IA 4Z03A 1BHEA 1O8MA 2X6WA 2NT9A 2PECA 4C2LA 3B4NA 4W8RA 1O88A 1K5CA 1QCXA 4NK6A 5AMVA 2QXZA 2UVFA 2BSPA 1PE9A 2NT6A 1X0CA 4XKVA 4XOTA 4OJPA 2INVA 2Z8GA 4XR6A 5C1EA 4OJLA 3GRHA 2QY1A 2VJJA 4OZYA 4XOPA 4U4BA 3B8YA 4OJ6A 4XLCA 1OGOX 4OJ5A 2INUA 1IA5A 3UW0A 2NSTA 4XMYA 4XLHA 1O8LA 1NHCA 1OOCA 1EE6A 3ZPPA 3JURA 2NSPA 1XG2A 4W8QA 3B90A 3KRGA 2X3HA 4YZ0A 4U49A 1PLUA 2NTQA 4Z05A 1OFLA 4XLFA 2PYGA 2X6XA 2IQ7A 4W8TA 1O8FA 4YZXA 1OFMA 2NTPA 4URRA 5C1CA 1RWRA 4XM3A 1O8JA 4XN3A 3VMVA 1RU4A 4YELA 1BN8A 4YZAA 3EQNA 4HWVA 1JTAA 4OZZA 1DBOA 3WWGA 1O8GA 1RMGA 2UVEA 3EQOA 2ODLA 4XLAA 3ZSCA 4EW9A 1O8EA 4XQFA 1IB4A 4XN0A 1KCCA 3VMWA 4I84A 2O17A 1HG8A 3FY3A 3LMWA 1GQ8A 4XLEA 3VSTA 2EWEA 4YZQA 2VBMA 2NTBA 4OJOA 2VJIA 1WMRA 1VBLA 3VSUA 3GQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8D A;  3GQA A;  2VBE A;  4AVZ A;  4MXN A;  2O0W A;  4XKW A;  1JRG A;  4Z06 A;  2NZM A;  4NK8 A;  2PYH A;  1KTW A;  1IDK A;  1CZF A;  2O04 A;  4PMH A;  1H80 A;  2X85 A;  3GQ9 A;  4XON A;  1AIR A;  1OGM X;  2O1D A;  1O8H A;  1PXZ A;  4XNF A;  2O0V A;  1KCD A;  4XL9 A;  3SUC A;  4XOR A;  2QX3 A;  1IDJ A;  4MR0 A;  3GQ7 A;  1DBG A;  4W8S A;  3T9G A;  1QJV A;  3VSV A;  2VBK A;  1O8K A;  4YEJ A;  2X6Y A;  1O8I A;  4Z03 A;  1BHE A;  1O8M A;  2X6W A;  2NT9 A;  2PEC A;  4C2L A;  3B4N A;  4W8R A;  1O88 A;  1K5C A;  1QCX A;  4NK6 A;  5AMV A;  2QXZ A;  2UVF A;  2BSP A;  1PE9 A;  2NT6 A;  1X0C A;  4XKV A;  4XOT A;  4OJP A;  2INV A;  2Z8G A;  4XR6 A;  5C1E A;  4OJL A;  3GRH A;  2QY1 A;  2VJJ A;  4OZY A;  4XOP A;  4U4B A;  3B8Y A;  4OJ6 A;  4XLC A;  1OGO X;  4OJ5 A;  2INU A;  1IA5 A;  3UW0 A;  2NST A;  4XMY A;  4XLH A;  1O8L A;  1NHC A;  1OOC A;  1EE6 A;  3ZPP A;  3JUR A;  2NSP A;  1XG2 A;  4W8Q A;  3B90 A;  3KRG A;  2X3H A;  4YZ0 A;  4U49 A;  1PLU A;  2NTQ A;  4Z05 A;  1OFL A;  4XLF A;  2PYG A;  2X6X A;  2IQ7 A;  4W8T A;  1O8F A;  4YZX A;  1OFM A;  2NTP A;  4URR A;  5C1C A;  1RWR A;  4XM3 A;  1O8J A;  4XN3 A;  3VMV A;  1RU4 A;  4YEL A;  1BN8 A;  4YZA A;  3EQN A;  4HWV A;  1JTA A;  4OZZ A;  1DBO A;  3WWG A;  1O8G A;  1RMG A;  2UVE A;  3EQO A;  2ODL A;  4XLA A;  3ZSC A;  4EW9 A;  1O8E A;  4XQF A;  1IB4 A;  4XN0 A;  1KCC A;  3VMW A;  4I84 A;  2O17 A;  1HG8 A;  3FY3 A;  3LMW A;  1GQ8 A;  4XLE A;  3VST A;  2EWE A;  4YZQ A;  2VBM A;  2NTB A;  4OJO A;  2VJI A;  1WMR A;  1VBL A;  3VSU A;  3GQ8 A; 
#chains in the Genus database with same CATH topology
 1O8D A;  2J8I A;  2VBE A;  3GQA A;  1OFD A;  2O0W A;  3LYC A;  3N90 A;  4MXN A;  4XKW A;  4AVZ A;  3JX8 A;  1JRG A;  4Z06 A;  2NZM A;  3PSS A;  4NK8 A;  2IOU G;  2G0Y A;  2PYH A;  3P4G A;  1KTW A;  1QA3 A;  2BM7 A;  1IDK A;  1CZF A;  2O04 A;  4V02 C;  4PMH A;  3LJY A;  4YDT A;  1H80 A;  2XT2 A;  4KH3 A;  2X85 A;  3GQ9 A;  4XON A;  1AIR A;  1OGM X;  2O1D A;  1O8H A;  1PXZ A;  1TYW A;  4XNF A;  1WXR A;  1LM1 A;  2VFP A;  2O0V A;  1KCD A;  4XL9 A;  3SUC A;  4XOR A;  2QX3 A;  1IDJ A;  4MR0 A;  3GQ7 A;  1DBG A;  4W8S A;  3T9G A;  1QJV A;  3VSV A;  1QA1 A;  2VBK A;  1EZG A;  1O8K A;  4YEJ A;  2X6Y A;  1O8I A;  4Z03 A;  1QA2 A;  1BHE A;  1O8M A;  2X6W A;  2NT9 A;  2PEC A;  4C2L A;  3B4N A;  4W8R A;  1O88 A;  2QYU A;  1K5C A;  1QCX A;  1TYV A;  1TYU A;  4NK6 A;  5AMV A;  1QQ1 A;  2XTY A;  2QXZ A;  2UVF A;  2BSP A;  2BM6 A;  2VFO A;  1PE9 A;  2NT6 A;  3BH6 B;  3N6Z A;  1HF2 A;  1K4Z A;  3TH0 A;  4OM9 A;  1X0C A;  2O6W A;  4XKV A;  4XOT A;  2V5I A;  3DU1 X;  2INV A;  4OJP A;  2Z8G A;  4XR6 A;  5C1E A;  4OJL A;  3NAW A;  3GRH A;  1KQ5 A;  1LLW A;  4JRA C;  1L1I A;  2QY1 A;  2VJJ A;  4OZY A;  4XOP A;  1TYX A;  4U4B A;  3B8Y A;  4OJ6 A;  4XLC A;  3SY2 A;  1OGO X;  4OJ5 A;  5JLV C;  2B0R A;  2INU A;  2VFM A;  1IA5 A;  3UW0 A;  2NST A;  4XMY A;  2BM4 A;  4XLH A;  1O8L A;  1NHC A;  1OOC A;  1EE6 A;  3ZPP A;  3JUR A;  1DAB A;  2NSP A;  3SZE A;  4YCQ A;  1XG2 A;  4W8Q A;  3H09 A;  3B90 A;  3KRG A;  3ML3 A;  2QZA A;  2X3H A;  4YZ0 A;  4U49 A;  1PLU A;  2NTQ A;  4YC5 A;  4Z05 A;  1OFL A;  4YFO A;  4XLF A;  3SYJ A;  2PYG A;  4OPW A;  2W7Z A;  2X6X A;  2IQ7 A;  2XTX A;  1QRC A;  4W8T A;  4YEI A;  1O8F A;  4YZX A;  5JMC B;  2VFN A;  1OFM A;  2NTP A;  4URR A;  3RIQ A;  5C1C A;  1RWR A;  4XM3 A;  1O8J A;  3PET A;  2XC1 A;  2F3L A;  4XN3 A;  3VMV A;  1RU4 A;  3NB2 A;  1TSP A;  3BH7 B;  5DNS A;  2VFQ A;  4YEL A;  1BN8 A;  4YZA A;  3EQN A;  1OFE A;  1JTA A;  4HWV A;  4OZZ A;  3AK5 A;  1EA0 A;  1DBO A;  2BX6 A;  3WWG A;  1O8G A;  2YUH A;  1RMG A;  2UVE A;  3EQO A;  2ODL A;  4XLA A;  3ZSC A;  2BM5 A;  4EW9 A;  1O8E A;  4XQF A;  1IB4 A;  4XN0 A;  2XTW A;  1KCC A;  3VMW A;  4I84 A;  2O17 A;  1HG8 A;  3FY3 A;  3LMW A;  1GQ8 A;  4XLE A;  2J8K A;  1LLZ A;  1CLW A;  2XT4 A;  3VST A;  2EWE A;  4YZQ A;  2VBM A;  1K8F A;  1QRB A;  2NTB A;  4OJO A;  2VJI A;  1WMR A;  3SQV A;  3PSZ A;  1VBL A;  3VSU A;  3GQ8 A; 
#chains in the Genus database with same CATH homology
 1O8D A;  3GQA A;  2VBE A;  4AVZ A;  4MXN A;  2O0W A;  4XKW A;  1JRG A;  4Z06 A;  2NZM A;  4NK8 A;  2PYH A;  1KTW A;  1IDK A;  1CZF A;  2O04 A;  4PMH A;  1H80 A;  2X85 A;  3GQ9 A;  4XON A;  1AIR A;  1OGM X;  2O1D A;  1O8H A;  1PXZ A;  4XNF A;  2O0V A;  1KCD A;  4XL9 A;  3SUC A;  4XOR A;  2QX3 A;  1IDJ A;  4MR0 A;  3GQ7 A;  1DBG A;  4W8S A;  3T9G A;  1QJV A;  3VSV A;  2VBK A;  1O8K A;  4YEJ A;  2X6Y A;  1O8I A;  4Z03 A;  1BHE A;  1O8M A;  2X6W A;  2NT9 A;  2PEC A;  4C2L A;  3B4N A;  4W8R A;  1O88 A;  1K5C A;  1QCX A;  4NK6 A;  5AMV A;  2QXZ A;  2UVF A;  2BSP A;  1PE9 A;  2NT6 A;  1X0C A;  4XKV A;  4XOT A;  4OJP A;  2INV A;  2Z8G A;  4XR6 A;  5C1E A;  4OJL A;  3GRH A;  2QY1 A;  2VJJ A;  4OZY A;  4XOP A;  4U4B A;  3B8Y A;  4OJ6 A;  4XLC A;  1OGO X;  4OJ5 A;  2INU A;  1IA5 A;  3UW0 A;  2NST A;  4XMY A;  4XLH A;  1O8L A;  1NHC A;  1OOC A;  1EE6 A;  3ZPP A;  3JUR A;  2NSP A;  1XG2 A;  4W8Q A;  3B90 A;  3KRG A;  2X3H A;  4YZ0 A;  4U49 A;  1PLU A;  2NTQ A;  4Z05 A;  1OFL A;  4XLF A;  2PYG A;  2X6X A;  2IQ7 A;  4W8T A;  1O8F A;  4YZX A;  1OFM A;  2NTP A;  4URR A;  5C1C A;  1RWR A;  4XM3 A;  1O8J A;  4XN3 A;  3VMV A;  1RU4 A;  4YEL A;  1BN8 A;  4YZA A;  3EQN A;  4HWV A;  1JTA A;  4OZZ A;  1DBO A;  3WWG A;  1O8G A;  1RMG A;  2UVE A;  3EQO A;  2ODL A;  4XLA A;  3ZSC A;  4EW9 A;  1O8E A;  4XQF A;  1IB4 A;  4XN0 A;  1KCC A;  3VMW A;  4I84 A;  2O17 A;  1HG8 A;  3FY3 A;  3LMW A;  1GQ8 A;  4XLE A;  3VST A;  2EWE A;  4YZQ A;  2VBM A;  2NTB A;  4OJO A;  2VJI A;  1WMR A;  1VBL A;  3VSU A;  3GQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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