2O04A

Pectate lyase bound to hexasaccharide compound ii
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o04A00
1DBOA 1O8JA 1X0CA 2EWEA 4YZ0A 2QY1A 2VJIA 3UW0A 1O8LA 1PLUA 4W8QA 4Z03A 3EQNA 1O8IA 3VSVA 1OGMX 3ZPPA 2NT9A 2VBMA 1O8FA 3GRHA 3KRGA 1WMRA 2X6YA 3EQOA 1O8KA 1QCXA 2UVFA 1NHCA 1PXZA 1RWRA 1DBGA 2X85A 3B8YA 4XOTA 2X6WA 4OZZA 1CZFA 1OGOX 4YEJA 4Z05A 3ZSCA 4MXNA 4C2LA 2O04A 3VMVA 1O88A 1GQ8A 2O0WA 4XN0A 1O8GA 5AMVA 5C1CA 4URRA 1IA5A 3B90A 4XONA 4NK6A 2X6XA 1IB4A 4XORA 3GQ7A 4XLEA 4XR6A 4XKVA 2ODLA 4XN3A 4AVZA 4XM3A 2NSTA 4XOPA 4PMHA 1KCCA 4XLAA 1O8HA 4XQFA 4NK8A 1OOCA 4OJ5A 3VMWA 3GQ8A 2NT6A 2QX3A 1AIRA 1RU4A 1H80A 4HWVA 4XLCA 2VJJA 4XNFA 3GQAA 2X3HA 2VBEA 3JURA 1BHEA 2NTBA 2NSPA 1HG8A 1K5CA 2BSPA 2PYHA 1O8MA 3VSUA 2VBKA 1XG2A 2O0VA 4XMYA 1IDKA 4YZXA 2IQ7A 1KTWA 1IDJA 2NTQA 4XLHA 2PECA 5C1EA 4U49A 1OFMA 1KCDA 3LMWA 4OJ6A 1VBLA 4XKWA 1QJVA 1O8EA 4OJPA 2INVA 4I84A 4W8RA 4Z06A 3FY3A 2Z8GA 4W8TA 1OFLA 4YZAA 4YZQA 1O8DA 3WWGA 4U4BA 4OJOA 2UVEA 4XL9A 1EE6A 4EW9A 4MR0A 3VSTA 4OZYA 4OJLA 3T9GA 1JTAA 2O17A 1RMGA 3GQ9A 4YELA 2NTPA 4W8SA 2INUA 2O1DA 1JRGA 2NZMA 2QXZA 3B4NA 2PYGA 1BN8A 3SUCA 1PE9A 4XLFA
chains in the Genus database with same CATH superfamily
1DBOA 1O8JA 1X0CA 2EWEA 4OPWA 1L1IA 4YZ0A 2QY1A 2VJIA 3P4GA 4KH3A 1O8LA 1PLUA 4W8QA 3UW0A 1QRBA 4Z03A 1QQ1A 3EQNA 1O8IA 2BM4A 2G0YA 3VSVA 2XC1A 5JLVC 1DABA 1OGMX 2F3LA 3ZPPA 5DNSA 1TYVA 3SZEA 2NT9A 1CLWA 2VBMA 1O8FA 3GRHA 4YCQA 3KRGA 1WMRA 2X6YA 1LLZA 1O8KA 3EQOA 3LYCA 2BM5A 2XTXA 1QCXA 2UVFA 1WXRA 1NHCA 3TH0A 1PXZA 1RWRA 1DBGA 2X85A 3B8YA 4XOTA 2X6WA 4OZZA 1CZFA 1OGOX 4YEJA 4Z05A 3ZSCA 2QZAA 4MXNA 2O04A 3VMVA 1O88A 1GQ8A 2O0WA 4XN0A 1O8GA 4C2LA 5AMVA 5C1CA 4URRA 1IA5A 3B90A 3PSSA 4XONA 4NK6A 2X6XA 1IB4A 4YDTA 4XORA 3GQ7A 4XLEA 4XR6A 4XKVA 3JX8A 1HF2A 4JRAC 2ODLA 4XN3A 4AVZA 4XM3A 5JMCB 2NSTA 4XOPA 4YFOA 2BM6A 1EZGA 2VFPA 3NAWA 4PMHA 1KCCA 4YC5A 3NB2A 4XLAA 2VFNA 1O8HA 2XTWA 3N90A 4XQFA 3AK5A 4NK8A 3DU1X 3LJYA 1OOCA 4OJ5A 4V02C 3VMWA 2QYUA 3GQ8A 2NT6A 2QX3A 1TYUA 1AIRA 1RU4A 1H80A 4HWVA 1K4ZA 4XLCA 1QA2A 2VJJA 4XNFA 2BM7A 3GQAA 3BH6B 1LM1A 3BH7B 2X3HA 2VBEA 4YEIA 3JURA 3N6ZA 1BHEA 2NTBA 2NSPA 3SYJA 1HG8A 1TYWA 1OFDA 1K5CA 1TSPA 3SY2A 2BSPA 2PYHA 1O8MA 3VSUA 2VBKA 1XG2A 2O0VA 4XMYA 1IDKA 4YZXA 2IQ7A 1KTWA 1IDJA 2NTQA 2VFQA 2XT4A 2XTYA 3H09A 4XLHA 2PECA 4OM9A 2V5IA 5C1EA 4U49A 1OFMA 1KCDA 3LMWA 1OFEA 2W7ZA 1QA3A 3RIQA 4OJ6A 1VBLA 3PSZA 4XKWA 2O6WA 1QJVA 1O8EA 1KQ5A 4OJPA 2INVA 3PETA 2XT2A 2IOUG 4I84A 4W8RA 1K8FA 4Z06A 2J8IA 3FY3A 2Z8GA 4W8TA 1OFLA 2B0RA 4YZAA 4YZQA 3SQVA 1O8DA 3WWGA 4U4BA 4OJOA 2UVEA 1QA1A 1EA0A 4XL9A 2VFOA 1EE6A 2BX6A 4MR0A 4EW9A 3VSTA 2VFMA 4OZYA 4OJLA 3T9GA 1JTAA 2O17A 1RMGA 3GQ9A 4YELA 2NTPA 2YUHA 2J8KA 4W8SA 1QRCA 2INUA 2O1DA 1LLWA 1TYXA 1JRGA 2NZMA 2QXZA 3ML3A 3B4NA 2PYGA 1BN8A 3SUCA 1PE9A 4XLFA
chains in the Genus database with same CATH topology
1DBOA 1O8JA 1X0CA 2EWEA 4YZ0A 2QY1A 2VJIA 3UW0A 1O8LA 1PLUA 4W8QA 4Z03A 3EQNA 1O8IA 3VSVA 1OGMX 3ZPPA 2NT9A 2VBMA 1O8FA 3GRHA 3KRGA 1WMRA 2X6YA 3EQOA 1O8KA 1QCXA 2UVFA 1NHCA 1PXZA 1RWRA 1DBGA 2X85A 3B8YA 4XOTA 2X6WA 4OZZA 1CZFA 1OGOX 4YEJA 4Z05A 3ZSCA 4MXNA 4C2LA 2O04A 3VMVA 1O88A 1GQ8A 2O0WA 4XN0A 1O8GA 5AMVA 5C1CA 4URRA 1IA5A 3B90A 4XONA 4NK6A 2X6XA 1IB4A 4XORA 3GQ7A 4XLEA 4XR6A 4XKVA 2ODLA 4XN3A 4AVZA 4XM3A 2NSTA 4XOPA 4PMHA 1KCCA 4XLAA 1O8HA 4XQFA 4NK8A 1OOCA 4OJ5A 3VMWA 3GQ8A 2NT6A 2QX3A 1AIRA 1RU4A 1H80A 4HWVA 4XLCA 2VJJA 4XNFA 3GQAA 2X3HA 2VBEA 3JURA 1BHEA 2NTBA 2NSPA 1HG8A 1K5CA 2BSPA 2PYHA 1O8MA 3VSUA 2VBKA 1XG2A 2O0VA 4XMYA 1IDKA 4YZXA 2IQ7A 1KTWA 1IDJA 2NTQA 4XLHA 2PECA 5C1EA 4U49A 1OFMA 1KCDA 3LMWA 4OJ6A 1VBLA 4XKWA 1QJVA 1O8EA 4OJPA 2INVA 4I84A 4W8RA 4Z06A 3FY3A 2Z8GA 4W8TA 1OFLA 4YZAA 4YZQA 1O8DA 3WWGA 4U4BA 4OJOA 2UVEA 4XL9A 1EE6A 4EW9A 4MR0A 3VSTA 4OZYA 4OJLA 3T9GA 1JTAA 2O17A 1RMGA 3GQ9A 4YELA 2NTPA 4W8SA 2INUA 2O1DA 1JRGA 2NZMA 2QXZA 3B4NA 2PYGA 1BN8A 3SUCA 1PE9A 4XLFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DBO A;  1O8J A;  1X0C A;  2EWE A;  4YZ0 A;  2QY1 A;  2VJI A;  3UW0 A;  1O8L A;  1PLU A;  4W8Q A;  4Z03 A;  3EQN A;  1O8I A;  3VSV A;  1OGM X;  3ZPP A;  2NT9 A;  2VBM A;  1O8F A;  3GRH A;  3KRG A;  1WMR A;  2X6Y A;  3EQO A;  1O8K A;  1QCX A;  2UVF A;  1NHC A;  1PXZ A;  1RWR A;  1DBG A;  2X85 A;  3B8Y A;  4XOT A;  2X6W A;  4OZZ A;  1CZF A;  1OGO X;  4YEJ A;  4Z05 A;  3ZSC A;  4MXN A;  4C2L A;  2O04 A;  3VMV A;  1O88 A;  1GQ8 A;  2O0W A;  4XN0 A;  1O8G A;  5AMV A;  5C1C A;  4URR A;  1IA5 A;  3B90 A;  4XON A;  4NK6 A;  2X6X A;  1IB4 A;  4XOR A;  3GQ7 A;  4XLE A;  4XR6 A;  4XKV A;  2ODL A;  4XN3 A;  4AVZ A;  4XM3 A;  2NST A;  4XOP A;  4PMH A;  1KCC A;  4XLA A;  1O8H A;  4XQF A;  4NK8 A;  1OOC A;  4OJ5 A;  3VMW A;  3GQ8 A;  2NT6 A;  2QX3 A;  1AIR A;  1RU4 A;  1H80 A;  4HWV A;  4XLC A;  2VJJ A;  4XNF A;  3GQA A;  2X3H A;  2VBE A;  3JUR A;  1BHE A;  2NTB A;  2NSP A;  1HG8 A;  1K5C A;  2BSP A;  2PYH A;  1O8M A;  3VSU A;  2VBK A;  1XG2 A;  2O0V A;  4XMY A;  1IDK A;  4YZX A;  2IQ7 A;  1KTW A;  1IDJ A;  2NTQ A;  4XLH A;  2PEC A;  5C1E A;  4U49 A;  1OFM A;  1KCD A;  3LMW A;  4OJ6 A;  1VBL A;  4XKW A;  1QJV A;  1O8E A;  4OJP A;  2INV A;  4I84 A;  4W8R A;  4Z06 A;  3FY3 A;  2Z8G A;  4W8T A;  1OFL A;  4YZA A;  4YZQ A;  1O8D A;  3WWG A;  4U4B A;  4OJO A;  2UVE A;  4XL9 A;  1EE6 A;  4EW9 A;  4MR0 A;  3VST A;  4OZY A;  4OJL A;  3T9G A;  1JTA A;  2O17 A;  1RMG A;  3GQ9 A;  4YEL A;  2NTP A;  4W8S A;  2INU A;  2O1D A;  1JRG A;  2NZM A;  2QXZ A;  3B4N A;  2PYG A;  1BN8 A;  3SUC A;  1PE9 A;  4XLF A; 
#chains in the Genus database with same CATH topology
 1DBO A;  1O8J A;  1X0C A;  2EWE A;  4OPW A;  1L1I A;  4YZ0 A;  2QY1 A;  2VJI A;  3P4G A;  4KH3 A;  1O8L A;  1PLU A;  4W8Q A;  3UW0 A;  1QRB A;  4Z03 A;  1QQ1 A;  3EQN A;  1O8I A;  2BM4 A;  2G0Y A;  3VSV A;  2XC1 A;  5JLV C;  1DAB A;  1OGM X;  2F3L A;  3ZPP A;  5DNS A;  1TYV A;  3SZE A;  2NT9 A;  1CLW A;  2VBM A;  1O8F A;  3GRH A;  4YCQ A;  3KRG A;  1WMR A;  2X6Y A;  1LLZ A;  1O8K A;  3EQO A;  3LYC A;  2BM5 A;  2XTX A;  1QCX A;  2UVF A;  1WXR A;  1NHC A;  3TH0 A;  1PXZ A;  1RWR A;  1DBG A;  2X85 A;  3B8Y A;  4XOT A;  2X6W A;  4OZZ A;  1CZF A;  1OGO X;  4YEJ A;  4Z05 A;  3ZSC A;  2QZA A;  4MXN A;  2O04 A;  3VMV A;  1O88 A;  1GQ8 A;  2O0W A;  4XN0 A;  1O8G A;  4C2L A;  5AMV A;  5C1C A;  4URR A;  1IA5 A;  3B90 A;  3PSS A;  4XON A;  4NK6 A;  2X6X A;  1IB4 A;  4YDT A;  4XOR A;  3GQ7 A;  4XLE A;  4XR6 A;  4XKV A;  3JX8 A;  1HF2 A;  4JRA C;  2ODL A;  4XN3 A;  4AVZ A;  4XM3 A;  5JMC B;  2NST A;  4XOP A;  4YFO A;  2BM6 A;  1EZG A;  2VFP A;  3NAW A;  4PMH A;  1KCC A;  4YC5 A;  3NB2 A;  4XLA A;  2VFN A;  1O8H A;  2XTW A;  3N90 A;  4XQF A;  3AK5 A;  4NK8 A;  3DU1 X;  3LJY A;  1OOC A;  4OJ5 A;  4V02 C;  3VMW A;  2QYU A;  3GQ8 A;  2NT6 A;  2QX3 A;  1TYU A;  1AIR A;  1RU4 A;  1H80 A;  4HWV A;  1K4Z A;  4XLC A;  1QA2 A;  2VJJ A;  4XNF A;  2BM7 A;  3GQA A;  3BH6 B;  1LM1 A;  3BH7 B;  2X3H A;  2VBE A;  4YEI A;  3JUR A;  3N6Z A;  1BHE A;  2NTB A;  2NSP A;  3SYJ A;  1HG8 A;  1TYW A;  1OFD A;  1K5C A;  1TSP A;  3SY2 A;  2BSP A;  2PYH A;  1O8M A;  3VSU A;  2VBK A;  1XG2 A;  2O0V A;  4XMY A;  1IDK A;  4YZX A;  2IQ7 A;  1KTW A;  1IDJ A;  2NTQ A;  2VFQ A;  2XT4 A;  2XTY A;  3H09 A;  4XLH A;  2PEC A;  4OM9 A;  2V5I A;  5C1E A;  4U49 A;  1OFM A;  1KCD A;  3LMW A;  1OFE A;  2W7Z A;  1QA3 A;  3RIQ A;  4OJ6 A;  1VBL A;  3PSZ A;  4XKW A;  2O6W A;  1QJV A;  1O8E A;  1KQ5 A;  4OJP A;  2INV A;  3PET A;  2XT2 A;  2IOU G;  4I84 A;  4W8R A;  1K8F A;  4Z06 A;  2J8I A;  3FY3 A;  2Z8G A;  4W8T A;  1OFL A;  2B0R A;  4YZA A;  4YZQ A;  3SQV A;  1O8D A;  3WWG A;  4U4B A;  4OJO A;  2UVE A;  1QA1 A;  1EA0 A;  4XL9 A;  2VFO A;  1EE6 A;  2BX6 A;  4MR0 A;  4EW9 A;  3VST A;  2VFM A;  4OZY A;  4OJL A;  3T9G A;  1JTA A;  2O17 A;  1RMG A;  3GQ9 A;  4YEL A;  2NTP A;  2YUH A;  2J8K A;  4W8S A;  1QRC A;  2INU A;  2O1D A;  1LLW A;  1TYX A;  1JRG A;  2NZM A;  2QXZ A;  3ML3 A;  3B4N A;  2PYG A;  1BN8 A;  3SUC A;  1PE9 A;  4XLF A; 
#chains in the Genus database with same CATH homology
 1DBO A;  1O8J A;  1X0C A;  2EWE A;  4YZ0 A;  2QY1 A;  2VJI A;  3UW0 A;  1O8L A;  1PLU A;  4W8Q A;  4Z03 A;  3EQN A;  1O8I A;  3VSV A;  1OGM X;  3ZPP A;  2NT9 A;  2VBM A;  1O8F A;  3GRH A;  3KRG A;  1WMR A;  2X6Y A;  3EQO A;  1O8K A;  1QCX A;  2UVF A;  1NHC A;  1PXZ A;  1RWR A;  1DBG A;  2X85 A;  3B8Y A;  4XOT A;  2X6W A;  4OZZ A;  1CZF A;  1OGO X;  4YEJ A;  4Z05 A;  3ZSC A;  4MXN A;  4C2L A;  2O04 A;  3VMV A;  1O88 A;  1GQ8 A;  2O0W A;  4XN0 A;  1O8G A;  5AMV A;  5C1C A;  4URR A;  1IA5 A;  3B90 A;  4XON A;  4NK6 A;  2X6X A;  1IB4 A;  4XOR A;  3GQ7 A;  4XLE A;  4XR6 A;  4XKV A;  2ODL A;  4XN3 A;  4AVZ A;  4XM3 A;  2NST A;  4XOP A;  4PMH A;  1KCC A;  4XLA A;  1O8H A;  4XQF A;  4NK8 A;  1OOC A;  4OJ5 A;  3VMW A;  3GQ8 A;  2NT6 A;  2QX3 A;  1AIR A;  1RU4 A;  1H80 A;  4HWV A;  4XLC A;  2VJJ A;  4XNF A;  3GQA A;  2X3H A;  2VBE A;  3JUR A;  1BHE A;  2NTB A;  2NSP A;  1HG8 A;  1K5C A;  2BSP A;  2PYH A;  1O8M A;  3VSU A;  2VBK A;  1XG2 A;  2O0V A;  4XMY A;  1IDK A;  4YZX A;  2IQ7 A;  1KTW A;  1IDJ A;  2NTQ A;  4XLH A;  2PEC A;  5C1E A;  4U49 A;  1OFM A;  1KCD A;  3LMW A;  4OJ6 A;  1VBL A;  4XKW A;  1QJV A;  1O8E A;  4OJP A;  2INV A;  4I84 A;  4W8R A;  4Z06 A;  3FY3 A;  2Z8G A;  4W8T A;  1OFL A;  4YZA A;  4YZQ A;  1O8D A;  3WWG A;  4U4B A;  4OJO A;  2UVE A;  4XL9 A;  1EE6 A;  4EW9 A;  4MR0 A;  3VST A;  4OZY A;  4OJL A;  3T9G A;  1JTA A;  2O17 A;  1RMG A;  3GQ9 A;  4YEL A;  2NTP A;  4W8S A;  2INU A;  2O1D A;  1JRG A;  2NZM A;  2QXZ A;  3B4N A;  2PYG A;  1BN8 A;  3SUC A;  1PE9 A;  4XLF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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