2O04A

Pectate lyase bound to hexasaccharide compound ii
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
source organism Bacillus subtilis
molecule tags Lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o04A00
4XLAA 1O8LA 3B90A 4W8RA 4YZXA 2QY1A 4XM3A 3B4NA 1HG8A 4PMHA 1RMGA 4NK8A 1O8DA 1OFMA 2UVFA 4AVZA 4XOPA 2O0WA 2PYGA 1K5CA 3SUCA 2X6XA 4XNFA 2NT6A 3UW0A 2IQ7A 1O88A 4YZAA 1O8MA 4XMYA 3VMVA 4EW9A 2INVA 3JURA 4XORA 1KTWA 1O8GA 1GQ8A 4MXNA 4OJ6A 4XLCA 4YZQA 4XL9A 2X6WA 4W8QA 1RU4A 3EQNA 2PECA 2NTQA 1O8JA 4XLHA 1IA5A 1OGOX 2VJJA 2O1DA 4OJLA 2QX3A 4XQFA 1JRGA 1O8FA 1AIRA 2VBMA 4XR6A 2O0VA 1BHEA 2X3HA 1O8IA 3B8YA 4OJPA 2NZMA 1O8EA 1PXZA 2X6YA 2NTPA 1DBGA 4C2LA 2ODLA 1QJVA 3GQ7A 5C1EA 3GQ8A 2UVEA 4XLEA 4XONA 1KCDA 2VBKA 3VSUA 4U49A 2EWEA 4XOTA 4Z05A 1OGMX 4XKVA 1KCCA 1O8HA 1RWRA 1BN8A 3GQ9A 2VBEA 2NT9A 4I84A 4YEJA 4YZ0A 2NSTA 2Z8GA 1OFLA 1PE9A 4XKWA 1XG2A 2NTBA 2PYHA 3ZPPA 2VJIA 2NSPA 1PLUA 4XN0A 3ZSCA 3T9GA 2QXZA 2X85A 1IB4A 1DBOA 4URRA 4MR0A 4U4BA 1NHCA 4YELA 1IDKA 5AMVA 3VSTA 1OOCA 4OJ5A 4OJOA 4Z06A 1X0CA 5C1CA 2O04A 3GQAA 1JTAA 3VSVA 4HWVA 1IDJA 3WWGA 2BSPA 2INUA 2O17A 4OZYA 3FY3A 3VMWA 4W8TA 1H80A 1CZFA 3EQOA 3LMWA 3KRGA 4XLFA 1O8KA 4W8SA 4NK6A 4XN3A 1EE6A 4OZZA 3GRHA 4Z03A 1WMRA 1QCXA 1VBLA
chains in the Genus database with same CATH superfamily
2BM5A 2VFNA 4XLAA 1O8LA 3B90A 4W8RA 4YZXA 1TYVA 2BM7A 2QY1A 4XM3A 2BM6A 1KQ5A 2G0YA 1EA0A 2XT2A 3B4NA 1HG8A 4PMHA 1RMGA 4NK8A 1O8DA 1OFMA 2UVFA 4AVZA 4XOPA 2O0WA 2PYGA 4OPWA 1K5CA 3SUCA 2X6XA 1K4ZA 4XNFA 4YEIA 3AK5A 2NT6A 1EZGA 2BX6A 2XTYA 3UW0A 2IQ7A 1O88A 4YZAA 1O8MA 2V5IA 4XMYA 3VMVA 3PSZA 4EW9A 2INVA 3JURA 4XORA 4YCQA 1L1IA 1KTWA 1O8GA 1GQ8A 4MXNA 4OJ6A 4XLCA 4YZQA 4XL9A 2VFPA 3PETA 2X6WA 2QZAA 1RU4A 3EQNA 4W8QA 2PECA 3LYCA 2NTQA 3H09A 3SY2A 1O8JA 2W7ZA 4XLHA 1IA5A 1OGOX 2VJJA 2O1DA 4OJLA 2QX3A 1OFDA 3RIQA 4XQFA 1WXRA 1JRGA 1O8FA 2BM4A 4V02C 1AIRA 2VBMA 4XR6A 2O0VA 1BHEA 3TH0A 2X3HA 3SYJA 1O8IA 3B8YA 4OJPA 2NZMA 1O8EA 1LLZA 4YFOA 1PXZA 2X6YA 2NTPA 1DBGA 4C2LA 2ODLA 1QJVA 3GQ7A 3BH7B 5C1EA 3GQ8A 2UVEA 4XLEA 4XONA 1KCDA 2VBKA 3N90A 3VSUA 4U49A 2EWEA 4XOTA 2J8KA 2XT4A 4Z05A 3ML3A 1OGMX 4XKVA 1KCCA 1O8HA 1RWRA 1QA3A 1BN8A 3GQ9A 2F3LA 2VBEA 2NT9A 4I84A 4YEJA 4YZ0A 2NSTA 1LM1A 2Z8GA 2YUHA 1OFLA 1PE9A 4XKWA 2VFOA 1XG2A 2NTBA 2PYHA 1TSPA 2XC1A 3ZPPA 2VJIA 5JLVC 2NSPA 1QRBA 1PLUA 2XTWA 3NAWA 1LLWA 4XN0A 3ZSCA 3T9GA 2QXZA 1QA2A 2X85A 3P4GA 1IB4A 1QA1A 1DBOA 4URRA 2VFQA 4YDTA 4MR0A 4U4BA 5DNSA 1NHCA 2J8IA 1IDKA 4YELA 5AMVA 1TYXA 1OOCA 1TYUA 2B0RA 2VFMA 3VSTA 2QYUA 4OJ5A 4OJOA 4Z06A 4KH3A 1OFEA 1X0CA 2O6WA 5C1CA 2O04A 3GQAA 3N6ZA 1JTAA 2IOUG 3VSVA 4HWVA 1IDJA 2XTXA 1QQ1A 3WWGA 2BSPA 2INUA 2O17A 4OZYA 4YC5A 3FY3A 3VMWA 3DU1X 1H80A 4W8TA 3SZEA 1CZFA 3NB2A 3EQOA 3LMWA 3KRGA 4OM9A 1CLWA 4XLFA 1O8KA 5JMCB 3BH6B 4W8SA 3PSSA 4NK6A 4XN3A 1HF2A 1EE6A 3JX8A 1K8FA 3LJYA 1QRCA 4JRAC 1TYWA 4OZZA 3SQVA 1DABA 3GRHA 4Z03A 1WMRA 1QCXA 1VBLA
chains in the Genus database with same CATH topology
4XLAA 1O8LA 3B90A 4W8RA 4YZXA 2QY1A 4XM3A 3B4NA 1HG8A 4PMHA 1RMGA 4NK8A 1O8DA 1OFMA 2UVFA 4AVZA 4XOPA 2O0WA 2PYGA 1K5CA 3SUCA 2X6XA 4XNFA 2NT6A 3UW0A 2IQ7A 1O88A 4YZAA 1O8MA 4XMYA 3VMVA 4EW9A 2INVA 3JURA 4XORA 1KTWA 1O8GA 1GQ8A 4MXNA 4OJ6A 4XLCA 4YZQA 4XL9A 2X6WA 4W8QA 1RU4A 3EQNA 2PECA 2NTQA 1O8JA 4XLHA 1IA5A 1OGOX 2VJJA 2O1DA 4OJLA 2QX3A 4XQFA 1JRGA 1O8FA 1AIRA 2VBMA 4XR6A 2O0VA 1BHEA 2X3HA 1O8IA 3B8YA 4OJPA 2NZMA 1O8EA 1PXZA 2X6YA 2NTPA 1DBGA 4C2LA 2ODLA 1QJVA 3GQ7A 5C1EA 3GQ8A 2UVEA 4XLEA 4XONA 1KCDA 2VBKA 3VSUA 4U49A 2EWEA 4XOTA 4Z05A 1OGMX 4XKVA 1KCCA 1O8HA 1RWRA 1BN8A 3GQ9A 2VBEA 2NT9A 4I84A 4YEJA 4YZ0A 2NSTA 2Z8GA 1OFLA 1PE9A 4XKWA 1XG2A 2NTBA 2PYHA 3ZPPA 2VJIA 2NSPA 1PLUA 4XN0A 3ZSCA 3T9GA 2QXZA 2X85A 1IB4A 1DBOA 4URRA 4MR0A 4U4BA 1NHCA 4YELA 1IDKA 5AMVA 3VSTA 1OOCA 4OJ5A 4OJOA 4Z06A 1X0CA 5C1CA 2O04A 3GQAA 1JTAA 3VSVA 4HWVA 1IDJA 3WWGA 2BSPA 2INUA 2O17A 4OZYA 3FY3A 3VMWA 4W8TA 1H80A 1CZFA 3EQOA 3LMWA 3KRGA 4XLFA 1O8KA 4W8SA 4NK6A 4XN3A 1EE6A 4OZZA 3GRHA 4Z03A 1WMRA 1QCXA 1VBLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XLA A;  1O8L A;  3B90 A;  4W8R A;  4YZX A;  2QY1 A;  4XM3 A;  3B4N A;  1HG8 A;  4PMH A;  1RMG A;  4NK8 A;  1O8D A;  1OFM A;  2UVF A;  4AVZ A;  4XOP A;  2O0W A;  2PYG A;  1K5C A;  3SUC A;  2X6X A;  4XNF A;  2NT6 A;  3UW0 A;  2IQ7 A;  1O88 A;  4YZA A;  1O8M A;  4XMY A;  3VMV A;  4EW9 A;  2INV A;  3JUR A;  4XOR A;  1KTW A;  1O8G A;  1GQ8 A;  4MXN A;  4OJ6 A;  4XLC A;  4YZQ A;  4XL9 A;  2X6W A;  4W8Q A;  1RU4 A;  3EQN A;  2PEC A;  2NTQ A;  1O8J A;  4XLH A;  1IA5 A;  1OGO X;  2VJJ A;  2O1D A;  4OJL A;  2QX3 A;  4XQF A;  1JRG A;  1O8F A;  1AIR A;  2VBM A;  4XR6 A;  2O0V A;  1BHE A;  2X3H A;  1O8I A;  3B8Y A;  4OJP A;  2NZM A;  1O8E A;  1PXZ A;  2X6Y A;  2NTP A;  1DBG A;  4C2L A;  2ODL A;  1QJV A;  3GQ7 A;  5C1E A;  3GQ8 A;  2UVE A;  4XLE A;  4XON A;  1KCD A;  2VBK A;  3VSU A;  4U49 A;  2EWE A;  4XOT A;  4Z05 A;  1OGM X;  4XKV A;  1KCC A;  1O8H A;  1RWR A;  1BN8 A;  3GQ9 A;  2VBE A;  2NT9 A;  4I84 A;  4YEJ A;  4YZ0 A;  2NST A;  2Z8G A;  1OFL A;  1PE9 A;  4XKW A;  1XG2 A;  2NTB A;  2PYH A;  3ZPP A;  2VJI A;  2NSP A;  1PLU A;  4XN0 A;  3ZSC A;  3T9G A;  2QXZ A;  2X85 A;  1IB4 A;  1DBO A;  4URR A;  4MR0 A;  4U4B A;  1NHC A;  4YEL A;  1IDK A;  5AMV A;  3VST A;  1OOC A;  4OJ5 A;  4OJO A;  4Z06 A;  1X0C A;  5C1C A;  2O04 A;  3GQA A;  1JTA A;  3VSV A;  4HWV A;  1IDJ A;  3WWG A;  2BSP A;  2INU A;  2O17 A;  4OZY A;  3FY3 A;  3VMW A;  4W8T A;  1H80 A;  1CZF A;  3EQO A;  3LMW A;  3KRG A;  4XLF A;  1O8K A;  4W8S A;  4NK6 A;  4XN3 A;  1EE6 A;  4OZZ A;  3GRH A;  4Z03 A;  1WMR A;  1QCX A;  1VBL A; 
#chains in the Genus database with same CATH topology
 2BM5 A;  2VFN A;  4XLA A;  1O8L A;  3B90 A;  4W8R A;  4YZX A;  1TYV A;  2BM7 A;  2QY1 A;  4XM3 A;  2BM6 A;  1KQ5 A;  2G0Y A;  1EA0 A;  2XT2 A;  3B4N A;  1HG8 A;  4PMH A;  1RMG A;  4NK8 A;  1O8D A;  1OFM A;  2UVF A;  4AVZ A;  4XOP A;  2O0W A;  2PYG A;  4OPW A;  1K5C A;  3SUC A;  2X6X A;  1K4Z A;  4XNF A;  4YEI A;  3AK5 A;  2NT6 A;  1EZG A;  2BX6 A;  2XTY A;  3UW0 A;  2IQ7 A;  1O88 A;  4YZA A;  1O8M A;  2V5I A;  4XMY A;  3VMV A;  3PSZ A;  4EW9 A;  2INV A;  3JUR A;  4XOR A;  4YCQ A;  1L1I A;  1KTW A;  1O8G A;  1GQ8 A;  4MXN A;  4OJ6 A;  4XLC A;  4YZQ A;  4XL9 A;  2VFP A;  3PET A;  2X6W A;  2QZA A;  1RU4 A;  3EQN A;  4W8Q A;  2PEC A;  3LYC A;  2NTQ A;  3H09 A;  3SY2 A;  1O8J A;  2W7Z A;  4XLH A;  1IA5 A;  1OGO X;  2VJJ A;  2O1D A;  4OJL A;  2QX3 A;  1OFD A;  3RIQ A;  4XQF A;  1WXR A;  1JRG A;  1O8F A;  2BM4 A;  4V02 C;  1AIR A;  2VBM A;  4XR6 A;  2O0V A;  1BHE A;  3TH0 A;  2X3H A;  3SYJ A;  1O8I A;  3B8Y A;  4OJP A;  2NZM A;  1O8E A;  1LLZ A;  4YFO A;  1PXZ A;  2X6Y A;  2NTP A;  1DBG A;  4C2L A;  2ODL A;  1QJV A;  3GQ7 A;  3BH7 B;  5C1E A;  3GQ8 A;  2UVE A;  4XLE A;  4XON A;  1KCD A;  2VBK A;  3N90 A;  3VSU A;  4U49 A;  2EWE A;  4XOT A;  2J8K A;  2XT4 A;  4Z05 A;  3ML3 A;  1OGM X;  4XKV A;  1KCC A;  1O8H A;  1RWR A;  1QA3 A;  1BN8 A;  3GQ9 A;  2F3L A;  2VBE A;  2NT9 A;  4I84 A;  4YEJ A;  4YZ0 A;  2NST A;  1LM1 A;  2Z8G A;  2YUH A;  1OFL A;  1PE9 A;  4XKW A;  2VFO A;  1XG2 A;  2NTB A;  2PYH A;  1TSP A;  2XC1 A;  3ZPP A;  2VJI A;  5JLV C;  2NSP A;  1QRB A;  1PLU A;  2XTW A;  3NAW A;  1LLW A;  4XN0 A;  3ZSC A;  3T9G A;  2QXZ A;  1QA2 A;  2X85 A;  3P4G A;  1IB4 A;  1QA1 A;  1DBO A;  4URR A;  2VFQ A;  4YDT A;  4MR0 A;  4U4B A;  5DNS A;  1NHC A;  2J8I A;  1IDK A;  4YEL A;  5AMV A;  1TYX A;  1OOC A;  1TYU A;  2B0R A;  2VFM A;  3VST A;  2QYU A;  4OJ5 A;  4OJO A;  4Z06 A;  4KH3 A;  1OFE A;  1X0C A;  2O6W A;  5C1C A;  2O04 A;  3GQA A;  3N6Z A;  1JTA A;  2IOU G;  3VSV A;  4HWV A;  1IDJ A;  2XTX A;  1QQ1 A;  3WWG A;  2BSP A;  2INU A;  2O17 A;  4OZY A;  4YC5 A;  3FY3 A;  3VMW A;  3DU1 X;  1H80 A;  4W8T A;  3SZE A;  1CZF A;  3NB2 A;  3EQO A;  3LMW A;  3KRG A;  4OM9 A;  1CLW A;  4XLF A;  1O8K A;  5JMC B;  3BH6 B;  4W8S A;  3PSS A;  4NK6 A;  4XN3 A;  1HF2 A;  1EE6 A;  3JX8 A;  1K8F A;  3LJY A;  1QRC A;  4JRA C;  1TYW A;  4OZZ A;  3SQV A;  1DAB A;  3GRH A;  4Z03 A;  1WMR A;  1QCX A;  1VBL A; 
#chains in the Genus database with same CATH homology
 4XLA A;  1O8L A;  3B90 A;  4W8R A;  4YZX A;  2QY1 A;  4XM3 A;  3B4N A;  1HG8 A;  4PMH A;  1RMG A;  4NK8 A;  1O8D A;  1OFM A;  2UVF A;  4AVZ A;  4XOP A;  2O0W A;  2PYG A;  1K5C A;  3SUC A;  2X6X A;  4XNF A;  2NT6 A;  3UW0 A;  2IQ7 A;  1O88 A;  4YZA A;  1O8M A;  4XMY A;  3VMV A;  4EW9 A;  2INV A;  3JUR A;  4XOR A;  1KTW A;  1O8G A;  1GQ8 A;  4MXN A;  4OJ6 A;  4XLC A;  4YZQ A;  4XL9 A;  2X6W A;  4W8Q A;  1RU4 A;  3EQN A;  2PEC A;  2NTQ A;  1O8J A;  4XLH A;  1IA5 A;  1OGO X;  2VJJ A;  2O1D A;  4OJL A;  2QX3 A;  4XQF A;  1JRG A;  1O8F A;  1AIR A;  2VBM A;  4XR6 A;  2O0V A;  1BHE A;  2X3H A;  1O8I A;  3B8Y A;  4OJP A;  2NZM A;  1O8E A;  1PXZ A;  2X6Y A;  2NTP A;  1DBG A;  4C2L A;  2ODL A;  1QJV A;  3GQ7 A;  5C1E A;  3GQ8 A;  2UVE A;  4XLE A;  4XON A;  1KCD A;  2VBK A;  3VSU A;  4U49 A;  2EWE A;  4XOT A;  4Z05 A;  1OGM X;  4XKV A;  1KCC A;  1O8H A;  1RWR A;  1BN8 A;  3GQ9 A;  2VBE A;  2NT9 A;  4I84 A;  4YEJ A;  4YZ0 A;  2NST A;  2Z8G A;  1OFL A;  1PE9 A;  4XKW A;  1XG2 A;  2NTB A;  2PYH A;  3ZPP A;  2VJI A;  2NSP A;  1PLU A;  4XN0 A;  3ZSC A;  3T9G A;  2QXZ A;  2X85 A;  1IB4 A;  1DBO A;  4URR A;  4MR0 A;  4U4B A;  1NHC A;  4YEL A;  1IDK A;  5AMV A;  3VST A;  1OOC A;  4OJ5 A;  4OJO A;  4Z06 A;  1X0C A;  5C1C A;  2O04 A;  3GQA A;  1JTA A;  3VSV A;  4HWV A;  1IDJ A;  3WWG A;  2BSP A;  2INU A;  2O17 A;  4OZY A;  3FY3 A;  3VMW A;  4W8T A;  1H80 A;  1CZF A;  3EQO A;  3LMW A;  3KRG A;  4XLF A;  1O8K A;  4W8S A;  4NK6 A;  4XN3 A;  1EE6 A;  4OZZ A;  3GRH A;  4Z03 A;  1WMR A;  1QCX A;  1VBL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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