2QXZA

Pectate lyase r236f from xanthomonas campestris
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
330
structure length
330
Chain Sequence
GPVGYGAATTGGGNKVPVNVATFEAMQSAIDSYSGSGGLVLNYTGKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTIKGANGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWGTPDGSKPYANATNWISTKVFPESLGYIYTVTPAAQVKAKVIATAGAGKNLAE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Xanthomonas campestris pv. campestris
publication title Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment.
pubmed doi rcsb
molecule keywords pectate lyase II
total genus 127
structure length 330
sequence length 330
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2qxzA00
4XKVA 2PECA 2NT9A 2ODLA 1RMGA 2BSPA 4NK6A 4YZXA 1K5CA 3EQNA 5C1EA 4YZQA 4AVZA 1O8HA 4XMYA 1O8KA 1OFMA 1OFLA 3WWGA 3B8YA 1BN8A 3JURA 4W8SA 1NHCA 1O8EA 1KTWA 4URRA 2IQ7A 3VSUA 4NK8A 4I84A 4XLHA 4Z03A 4YELA 4XN0A 4HWVA 1AIRA 4XQFA 1OGMX 3UW0A 2EWEA 1O8JA 2NTPA 2O0VA 1PXZA 1RWRA 2VBMA 4XR6A 4XKWA 1KCCA 4XNFA 3GRHA 5C1CA 2VBEA 1DBOA 1O88A 1IDJA 1X0CA 2NZMA 2X6YA 4W8TA 1O8IA 2O04A 3SUCA 1H80A 1WMRA 3LMWA 1DBGA 2Z8GA 2O0WA 3GQ9A 4OJLA 4MXNA 3GQAA 3ZPPA 1BHEA 2NTBA 1QJVA 2INUA 2X6WA 4PMHA 2O17A 4Z05A 4YZ0A 2NTQA 4EW9A 3GQ7A 2UVFA 3VMVA 1QCXA 1VBLA 3B4NA 4YEJA 4YZAA 1O8LA 4XLAA 3GQ8A 2PYGA 3KRGA 1XG2A 1IB4A 4XOPA 4OJPA 1PE9A 3VSVA 4W8RA 2NSTA 1JTAA 1IA5A 1RU4A 1OGOX 1GQ8A 4XLFA 4XORA 5AMVA 2QY1A 4MR0A 4XM3A 4OJ6A 4C2LA 1OOCA 1KCDA 4OZZA 4XLCA 1HG8A 2UVEA 2NSPA 1EE6A 4XONA 3B90A 2X3HA 2VBKA 1CZFA 2INVA 4U4BA 1O8MA 2VJIA 2O1DA 2VJJA 4OJOA 4Z06A 2QX3A 4OJ5A 4XN3A 3FY3A 1JRGA 2QXZA 3T9GA 4W8QA 1O8GA 4XL9A 2X6XA 1IDKA 4XLEA 4U49A 3VSTA 3ZSCA 1O8DA 1PLUA 1O8FA 3EQOA 3VMWA 4OZYA 2X85A 4XOTA 2PYHA 2NT6A
chains in the Genus database with same CATH superfamily
4XKVA 2PECA 2NT9A 2ODLA 1RMGA 2BSPA 1OFDA 4NK6A 4YZXA 2W7ZA 1K5CA 3EQNA 4YFOA 5C1EA 4YZQA 4AVZA 1O8HA 4XMYA 1O8KA 3SQVA 1OFMA 3H09A 1OFLA 3N6ZA 3WWGA 3B8YA 1BN8A 3JURA 4W8SA 3N90A 1NHCA 1O8EA 1WXRA 1KTWA 1TYVA 2XC1A 4URRA 4YDTA 2IQ7A 2BX6A 3VSUA 4NK8A 2QZAA 2B0RA 1LLWA 4I84A 3BH7B 4XLHA 4YELA 1TYXA 2VFNA 4XN0A 4Z03A 4HWVA 1AIRA 4XQFA 4YEIA 3JX8A 1OGMX 3UW0A 3SZEA 2EWEA 2G0YA 1O8JA 2NTPA 2O0VA 3RIQA 1PXZA 1K8FA 1RWRA 2VBMA 4XR6A 4XKWA 1HF2A 2QYUA 2V5IA 1KCCA 4XNFA 3GRHA 1QA1A 5C1CA 2VBEA 1DBOA 4V02C 1O88A 1IDJA 1X0CA 2NZMA 2XT4A 3AK5A 2X6YA 4W8TA 1O8IA 3NB2A 2O04A 3SUCA 1H80A 1WMRA 1QA3A 3LMWA 1DBGA 2Z8GA 2O0WA 3GQ9A 1QQ1A 4OJLA 4MXNA 3GQAA 2BM6A 4OPWA 3ZPPA 1BHEA 2NTBA 1DABA 1QJVA 2INUA 2X6WA 2VFQA 2O17A 4PMHA 1TSPA 4Z05A 2NTQA 1TYWA 4JRAC 4YZ0A 2J8IA 4EW9A 2BM7A 3GQ7A 2UVFA 3VMVA 1QCXA 1VBLA 3B4NA 2J8KA 4YEJA 4YZAA 1O8LA 3P4GA 4YC5A 1L1IA 2IOUG 4YCQA 1EZGA 4XLAA 4KH3A 3GQ8A 2PYGA 3KRGA 1XG2A 3PETA 2XT2A 1IB4A 1LLZA 4XOPA 4OJPA 1PE9A 3TH0A 3VSVA 2F3LA 2NSTA 4W8RA 1QA2A 2BM5A 1JTAA 1K4ZA 3LJYA 1IA5A 1RU4A 1OGOX 1GQ8A 1QRBA 2VFPA 4XLFA 4XORA 5AMVA 3PSZA 2QY1A 4MR0A 4XM3A 4OJ6A 4C2LA 1OOCA 1LM1A 1KCDA 3ML3A 4OZZA 4XLCA 1HG8A 2UVEA 2NSPA 4OM9A 1EE6A 1KQ5A 4XONA 1OFEA 2YUHA 1EA0A 3B90A 3SY2A 5JMCB 1CLWA 2VBKA 2VFMA 2X3HA 1CZFA 2INVA 2XTYA 4U4BA 2O6WA 1O8MA 2O1DA 1TYUA 2VJJA 2VJIA 2VFOA 3DU1X 2QX3A 4OJOA 4OJ5A 4XN3A 4Z06A 3SYJA 3FY3A 3PSSA 1JRGA 2BM4A 2QXZA 3NAWA 1QRCA 2XTXA 3T9GA 2XTWA 4W8QA 1O8GA 4XL9A 2X6XA 1IDKA 3LYCA 4XLEA 4U49A 3VSTA 3ZSCA 1O8DA 1PLUA 3BH6B 1O8FA 3EQOA 5DNSA 3VMWA 4OZYA 2X85A 4XOTA 2PYHA 5JLVC 2NT6A
chains in the Genus database with same CATH topology
4XKVA 2PECA 2NT9A 2ODLA 1RMGA 2BSPA 4NK6A 4YZXA 1K5CA 3EQNA 5C1EA 4YZQA 4AVZA 1O8HA 4XMYA 1O8KA 1OFMA 1OFLA 3WWGA 3B8YA 1BN8A 3JURA 4W8SA 1NHCA 1O8EA 1KTWA 4URRA 2IQ7A 3VSUA 4NK8A 4I84A 4XLHA 4Z03A 4YELA 4XN0A 4HWVA 1AIRA 4XQFA 1OGMX 3UW0A 2EWEA 1O8JA 2NTPA 2O0VA 1PXZA 1RWRA 2VBMA 4XR6A 4XKWA 1KCCA 4XNFA 3GRHA 5C1CA 2VBEA 1DBOA 1O88A 1IDJA 1X0CA 2NZMA 2X6YA 4W8TA 1O8IA 2O04A 3SUCA 1H80A 1WMRA 3LMWA 1DBGA 2Z8GA 2O0WA 3GQ9A 4OJLA 4MXNA 3GQAA 3ZPPA 1BHEA 2NTBA 1QJVA 2INUA 2X6WA 4PMHA 2O17A 4Z05A 4YZ0A 2NTQA 4EW9A 3GQ7A 2UVFA 3VMVA 1QCXA 1VBLA 3B4NA 4YEJA 4YZAA 1O8LA 4XLAA 3GQ8A 2PYGA 3KRGA 1XG2A 1IB4A 4XOPA 4OJPA 1PE9A 3VSVA 4W8RA 2NSTA 1JTAA 1IA5A 1RU4A 1OGOX 1GQ8A 4XLFA 4XORA 5AMVA 2QY1A 4MR0A 4XM3A 4OJ6A 4C2LA 1OOCA 1KCDA 4OZZA 4XLCA 1HG8A 2UVEA 2NSPA 1EE6A 4XONA 3B90A 2X3HA 2VBKA 1CZFA 2INVA 4U4BA 1O8MA 2VJIA 2O1DA 2VJJA 4OJOA 4Z06A 2QX3A 4OJ5A 4XN3A 3FY3A 1JRGA 2QXZA 3T9GA 4W8QA 1O8GA 4XL9A 2X6XA 1IDKA 4XLEA 4U49A 3VSTA 3ZSCA 1O8DA 1PLUA 1O8FA 3EQOA 3VMWA 4OZYA 2X85A 4XOTA 2PYHA 2NT6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XKV A;  2PEC A;  2NT9 A;  2ODL A;  1RMG A;  2BSP A;  4NK6 A;  4YZX A;  1K5C A;  3EQN A;  5C1E A;  4YZQ A;  4AVZ A;  1O8H A;  4XMY A;  1O8K A;  1OFM A;  1OFL A;  3WWG A;  3B8Y A;  1BN8 A;  3JUR A;  4W8S A;  1NHC A;  1O8E A;  1KTW A;  4URR A;  2IQ7 A;  3VSU A;  4NK8 A;  4I84 A;  4XLH A;  4Z03 A;  4YEL A;  4XN0 A;  4HWV A;  1AIR A;  4XQF A;  1OGM X;  3UW0 A;  2EWE A;  1O8J A;  2NTP A;  2O0V A;  1PXZ A;  1RWR A;  2VBM A;  4XR6 A;  4XKW A;  1KCC A;  4XNF A;  3GRH A;  5C1C A;  2VBE A;  1DBO A;  1O88 A;  1IDJ A;  1X0C A;  2NZM A;  2X6Y A;  4W8T A;  1O8I A;  2O04 A;  3SUC A;  1H80 A;  1WMR A;  3LMW A;  1DBG A;  2Z8G A;  2O0W A;  3GQ9 A;  4OJL A;  4MXN A;  3GQA A;  3ZPP A;  1BHE A;  2NTB A;  1QJV A;  2INU A;  2X6W A;  4PMH A;  2O17 A;  4Z05 A;  4YZ0 A;  2NTQ A;  4EW9 A;  3GQ7 A;  2UVF A;  3VMV A;  1QCX A;  1VBL A;  3B4N A;  4YEJ A;  4YZA A;  1O8L A;  4XLA A;  3GQ8 A;  2PYG A;  3KRG A;  1XG2 A;  1IB4 A;  4XOP A;  4OJP A;  1PE9 A;  3VSV A;  4W8R A;  2NST A;  1JTA A;  1IA5 A;  1RU4 A;  1OGO X;  1GQ8 A;  4XLF A;  4XOR A;  5AMV A;  2QY1 A;  4MR0 A;  4XM3 A;  4OJ6 A;  4C2L A;  1OOC A;  1KCD A;  4OZZ A;  4XLC A;  1HG8 A;  2UVE A;  2NSP A;  1EE6 A;  4XON A;  3B90 A;  2X3H A;  2VBK A;  1CZF A;  2INV A;  4U4B A;  1O8M A;  2VJI A;  2O1D A;  2VJJ A;  4OJO A;  4Z06 A;  2QX3 A;  4OJ5 A;  4XN3 A;  3FY3 A;  1JRG A;  2QXZ A;  3T9G A;  4W8Q A;  1O8G A;  4XL9 A;  2X6X A;  1IDK A;  4XLE A;  4U49 A;  3VST A;  3ZSC A;  1O8D A;  1PLU A;  1O8F A;  3EQO A;  3VMW A;  4OZY A;  2X85 A;  4XOT A;  2PYH A;  2NT6 A; 
#chains in the Genus database with same CATH topology
 4XKV A;  2PEC A;  2NT9 A;  2ODL A;  1RMG A;  2BSP A;  1OFD A;  4NK6 A;  4YZX A;  2W7Z A;  1K5C A;  3EQN A;  4YFO A;  5C1E A;  4YZQ A;  4AVZ A;  1O8H A;  4XMY A;  1O8K A;  3SQV A;  1OFM A;  3H09 A;  1OFL A;  3N6Z A;  3WWG A;  3B8Y A;  1BN8 A;  3JUR A;  4W8S A;  3N90 A;  1NHC A;  1O8E A;  1WXR A;  1KTW A;  1TYV A;  2XC1 A;  4URR A;  4YDT A;  2IQ7 A;  2BX6 A;  3VSU A;  4NK8 A;  2QZA A;  2B0R A;  1LLW A;  4I84 A;  3BH7 B;  4XLH A;  4YEL A;  1TYX A;  2VFN A;  4XN0 A;  4Z03 A;  4HWV A;  1AIR A;  4XQF A;  4YEI A;  3JX8 A;  1OGM X;  3UW0 A;  3SZE A;  2EWE A;  2G0Y A;  1O8J A;  2NTP A;  2O0V A;  3RIQ A;  1PXZ A;  1K8F A;  1RWR A;  2VBM A;  4XR6 A;  4XKW A;  1HF2 A;  2QYU A;  2V5I A;  1KCC A;  4XNF A;  3GRH A;  1QA1 A;  5C1C A;  2VBE A;  1DBO A;  4V02 C;  1O88 A;  1IDJ A;  1X0C A;  2NZM A;  2XT4 A;  3AK5 A;  2X6Y A;  4W8T A;  1O8I A;  3NB2 A;  2O04 A;  3SUC A;  1H80 A;  1WMR A;  1QA3 A;  3LMW A;  1DBG A;  2Z8G A;  2O0W A;  3GQ9 A;  1QQ1 A;  4OJL A;  4MXN A;  3GQA A;  2BM6 A;  4OPW A;  3ZPP A;  1BHE A;  2NTB A;  1DAB A;  1QJV A;  2INU A;  2X6W A;  2VFQ A;  2O17 A;  4PMH A;  1TSP A;  4Z05 A;  2NTQ A;  1TYW A;  4JRA C;  4YZ0 A;  2J8I A;  4EW9 A;  2BM7 A;  3GQ7 A;  2UVF A;  3VMV A;  1QCX A;  1VBL A;  3B4N A;  2J8K A;  4YEJ A;  4YZA A;  1O8L A;  3P4G A;  4YC5 A;  1L1I A;  2IOU G;  4YCQ A;  1EZG A;  4XLA A;  4KH3 A;  3GQ8 A;  2PYG A;  3KRG A;  1XG2 A;  3PET A;  2XT2 A;  1IB4 A;  1LLZ A;  4XOP A;  4OJP A;  1PE9 A;  3TH0 A;  3VSV A;  2F3L A;  2NST A;  4W8R A;  1QA2 A;  2BM5 A;  1JTA A;  1K4Z A;  3LJY A;  1IA5 A;  1RU4 A;  1OGO X;  1GQ8 A;  1QRB A;  2VFP A;  4XLF A;  4XOR A;  5AMV A;  3PSZ A;  2QY1 A;  4MR0 A;  4XM3 A;  4OJ6 A;  4C2L A;  1OOC A;  1LM1 A;  1KCD A;  3ML3 A;  4OZZ A;  4XLC A;  1HG8 A;  2UVE A;  2NSP A;  4OM9 A;  1EE6 A;  1KQ5 A;  4XON A;  1OFE A;  2YUH A;  1EA0 A;  3B90 A;  3SY2 A;  5JMC B;  1CLW A;  2VBK A;  2VFM A;  2X3H A;  1CZF A;  2INV A;  2XTY A;  4U4B A;  2O6W A;  1O8M A;  2O1D A;  1TYU A;  2VJJ A;  2VJI A;  2VFO A;  3DU1 X;  2QX3 A;  4OJO A;  4OJ5 A;  4XN3 A;  4Z06 A;  3SYJ A;  3FY3 A;  3PSS A;  1JRG A;  2BM4 A;  2QXZ A;  3NAW A;  1QRC A;  2XTX A;  3T9G A;  2XTW A;  4W8Q A;  1O8G A;  4XL9 A;  2X6X A;  1IDK A;  3LYC A;  4XLE A;  4U49 A;  3VST A;  3ZSC A;  1O8D A;  1PLU A;  3BH6 B;  1O8F A;  3EQO A;  5DNS A;  3VMW A;  4OZY A;  2X85 A;  4XOT A;  2PYH A;  5JLV C;  2NT6 A; 
#chains in the Genus database with same CATH homology
 4XKV A;  2PEC A;  2NT9 A;  2ODL A;  1RMG A;  2BSP A;  4NK6 A;  4YZX A;  1K5C A;  3EQN A;  5C1E A;  4YZQ A;  4AVZ A;  1O8H A;  4XMY A;  1O8K A;  1OFM A;  1OFL A;  3WWG A;  3B8Y A;  1BN8 A;  3JUR A;  4W8S A;  1NHC A;  1O8E A;  1KTW A;  4URR A;  2IQ7 A;  3VSU A;  4NK8 A;  4I84 A;  4XLH A;  4Z03 A;  4YEL A;  4XN0 A;  4HWV A;  1AIR A;  4XQF A;  1OGM X;  3UW0 A;  2EWE A;  1O8J A;  2NTP A;  2O0V A;  1PXZ A;  1RWR A;  2VBM A;  4XR6 A;  4XKW A;  1KCC A;  4XNF A;  3GRH A;  5C1C A;  2VBE A;  1DBO A;  1O88 A;  1IDJ A;  1X0C A;  2NZM A;  2X6Y A;  4W8T A;  1O8I A;  2O04 A;  3SUC A;  1H80 A;  1WMR A;  3LMW A;  1DBG A;  2Z8G A;  2O0W A;  3GQ9 A;  4OJL A;  4MXN A;  3GQA A;  3ZPP A;  1BHE A;  2NTB A;  1QJV A;  2INU A;  2X6W A;  4PMH A;  2O17 A;  4Z05 A;  4YZ0 A;  2NTQ A;  4EW9 A;  3GQ7 A;  2UVF A;  3VMV A;  1QCX A;  1VBL A;  3B4N A;  4YEJ A;  4YZA A;  1O8L A;  4XLA A;  3GQ8 A;  2PYG A;  3KRG A;  1XG2 A;  1IB4 A;  4XOP A;  4OJP A;  1PE9 A;  3VSV A;  4W8R A;  2NST A;  1JTA A;  1IA5 A;  1RU4 A;  1OGO X;  1GQ8 A;  4XLF A;  4XOR A;  5AMV A;  2QY1 A;  4MR0 A;  4XM3 A;  4OJ6 A;  4C2L A;  1OOC A;  1KCD A;  4OZZ A;  4XLC A;  1HG8 A;  2UVE A;  2NSP A;  1EE6 A;  4XON A;  3B90 A;  2X3H A;  2VBK A;  1CZF A;  2INV A;  4U4B A;  1O8M A;  2VJI A;  2O1D A;  2VJJ A;  4OJO A;  4Z06 A;  2QX3 A;  4OJ5 A;  4XN3 A;  3FY3 A;  1JRG A;  2QXZ A;  3T9G A;  4W8Q A;  1O8G A;  4XL9 A;  2X6X A;  1IDK A;  4XLE A;  4U49 A;  3VST A;  3ZSC A;  1O8D A;  1PLU A;  1O8F A;  3EQO A;  3VMW A;  4OZY A;  2X85 A;  4XOT A;  2PYH A;  2NT6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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