3LMWA

Crystal structure of iota-carrageenase family gh82 from a. fortis in absence of chloride ions
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
472
structure length
472
Chain Sequence
VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYARGNGGTRWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWERLEHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Iota-carrageenase, CgiA
publication title Identification of catalytic residues and mechanistic analysis of family GH82 iota-carrageenases
pubmed doi rcsb
source organism Alteromonas
molecule tags Hydrolase
total genus 160
structure length 472
sequence length 472
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3lmwA01
1H80A 1IDKA 1BHEA 2VBMA 2INVA 4OJOA 4EW9A 2NTQA 1DBOA 4Z03A 1O8FA 3UW0A 4XLFA 2UVEA 1KTWA 1O8EA 2PYGA 2X6WA 3EQNA 4PMHA 1QCXA 2EWEA 4C2LA 3VSTA 2X6YA 3T9GA 1O8IA 4XR6A 1RU4A 1HG8A 3LMWA 3WWGA 4XLEA 1BN8A 2NSPA 2O17A 4XNFA 1IDJA 2X3HA 5C1EA 1WMRA 4XN3A 1O8GA 3KRGA 4XORA 4XLCA 2NT6A 2UVFA 2QXZA 2NT9A 2QY1A 2VBEA 4XONA 2PECA 3B4NA 4XOPA 2X6XA 1OFMA 1O8MA 4OZYA 2NTPA 1XG2A 1PXZA 2VJIA 4I84A 4XLAA 3GRHA 5AMVA 3GQ8A 4Z05A 4XN0A 1OGOX 2O1DA 4W8RA 1IB4A 1JTAA 3B90A 4OJLA 4YEJA 2IQ7A 2QX3A 1O88A 2O0VA 1K5CA 4XKVA 1KCCA 1O8JA 1OOCA 4HWVA 4XL9A 1CZFA 3ZSCA 2Z8GA 1IA5A 4XM3A 4XOTA 4W8TA 3B8YA 1O8KA 3GQ7A 4MXNA 1O8DA 4YZ0A 1RWRA 4XMYA 2BSPA 4U49A 4XLHA 4YELA 3VMWA 2VJJA 3GQAA 2X85A 1NHCA 1O8HA 1GQ8A 2O04A 4W8SA 3VMVA 4YZAA 4XQFA 1EE6A 4MR0A 2INUA 2NSTA 1X0CA 4OJPA 4YZQA 4W8QA 4NK6A 1PLUA 4URRA 1QJVA 1PE9A 2NZMA 1JRGA 4Z06A 3ZPPA 3JURA 3VSVA 2NTBA 4U4BA 4NK8A 4AVZA 3EQOA 1O8LA 2ODLA 4OJ6A 3SUCA 1VBLA 4OJ5A 4XKWA 2PYHA 1DBGA 4YZXA 1RMGA 5C1CA 2VBKA 1OFLA 3VSUA 1OGMX 3GQ9A 1AIRA 2O0WA 4OZZA 1KCDA 3FY3A
chains in the Genus database with same CATH superfamily
1H80A 2VFPA 1IDKA 2VFQA 1BHEA 2VBMA 2VFOA 1KQ5A 4OZZA 2INVA 4OJOA 4EW9A 2NTQA 1K4ZA 1DBOA 3NAWA 4Z03A 1DABA 1O8FA 3UW0A 2QZAA 2B0RA 4XLFA 2UVEA 3PSSA 1KTWA 1O8EA 2XTXA 2PYGA 2X6WA 2BM7A 3EQNA 4PMHA 1QCXA 2EWEA 1K8FA 1QQ1A 1OFDA 2BM5A 4C2LA 3VSTA 2X6YA 3T9GA 3SY2A 1O8IA 4XR6A 4KH3A 1RU4A 2VFNA 1HG8A 3LMWA 1TYVA 3SYJA 3WWGA 3BH6B 1EZGA 1BN8A 4XLEA 2NSPA 2O17A 2J8KA 4XNFA 4OM9A 1IDJA 2X3HA 5C1EA 1WMRA 4XN3A 1O8GA 3KRGA 2BM6A 4XORA 3AK5A 3RIQA 4XLCA 2NT6A 2UVFA 2QXZA 2W7ZA 1HF2A 2NT9A 2QY1A 2YUHA 3DU1X 2VBEA 4XONA 2PECA 3B4NA 4XOPA 2X6XA 1OFMA 2XTWA 1O8MA 4OZYA 1LLWA 2NTPA 1XG2A 1QA3A 1PXZA 3NB2A 2VJIA 4I84A 4XLAA 3PSZA 3GRHA 5AMVA 3GQ8A 4Z05A 4XN0A 1OGOX 2O1DA 3ML3A 4W8RA 4YDTA 1JTAA 3B90A 4OJLA 1IB4A 3JX8A 3PETA 4YEJA 2IQ7A 2G0YA 2QX3A 2XT4A 2QYUA 1O88A 2O0VA 3H09A 1K5CA 2XTYA 4XKVA 3BH7B 1KCCA 3N90A 4V02C 1O8JA 1OOCA 2XT2A 4HWVA 4XL9A 1CZFA 3ZSCA 5JMCB 2Z8GA 2O6WA 1IA5A 1WXRA 4XM3A 4XOTA 4W8TA 1TYXA 3B8YA 4YEIA 1O8KA 1TYUA 2VFMA 3GQ7A 4MXNA 1TYWA 1O8DA 4YZ0A 1RWRA 1QRBA 4XMYA 4YCQA 2BSPA 4JRAC 4U49A 4XLHA 4YELA 3VMWA 2VJJA 3GQAA 2X85A 1NHCA 1O8HA 1GQ8A 2O04A 4W8SA 2XC1A 3VMVA 4YZAA 4XQFA 3SQVA 1EE6A 5JLVC 3N6ZA 4YFOA 4MR0A 2INUA 2NSTA 1X0CA 4OJPA 4YZQA 4W8QA 1QRCA 4NK6A 1PLUA 4URRA 1QJVA 3LJYA 1PE9A 2NZMA 1LM1A 1JRGA 1EA0A 1LLZA 2J8IA 4Z06A 3ZPPA 2IOUG 3JURA 3VSVA 2NTBA 2F3LA 4U4BA 4NK8A 3P4GA 3EQOA 1O8LA 4AVZA 2ODLA 3LYCA 4OPWA 4OJ6A 3SUCA 1VBLA 4OJ5A 4XKWA 1OFEA 2PYHA 1QA2A 1CLWA 1DBGA 4YZXA 1QA1A 1RMGA 5DNSA 2VBKA 5C1CA 1TSPA 1OFLA 4YC5A 3VSUA 1OGMX 3GQ9A 1AIRA 2BM4A 3TH0A 2O0WA 1L1IA 2V5IA 1KCDA 2BX6A 3SZEA 3FY3A
chains in the Genus database with same CATH topology
1H80A 1IDKA 1BHEA 2VBMA 2INVA 4OJOA 4EW9A 2NTQA 1DBOA 4Z03A 1O8FA 3UW0A 4XLFA 2UVEA 1KTWA 1O8EA 2PYGA 2X6WA 3EQNA 4PMHA 1QCXA 2EWEA 4C2LA 3VSTA 2X6YA 3T9GA 1O8IA 4XR6A 1RU4A 1HG8A 3LMWA 3WWGA 4XLEA 1BN8A 2NSPA 2O17A 4XNFA 1IDJA 2X3HA 5C1EA 1WMRA 4XN3A 1O8GA 3KRGA 4XORA 4XLCA 2NT6A 2UVFA 2QXZA 2NT9A 2QY1A 2VBEA 4XONA 2PECA 3B4NA 4XOPA 2X6XA 1OFMA 1O8MA 4OZYA 2NTPA 1XG2A 1PXZA 2VJIA 4I84A 4XLAA 3GRHA 5AMVA 3GQ8A 4Z05A 4XN0A 1OGOX 2O1DA 4W8RA 1IB4A 1JTAA 3B90A 4OJLA 4YEJA 2IQ7A 2QX3A 1O88A 2O0VA 1K5CA 4XKVA 1KCCA 1O8JA 1OOCA 4HWVA 4XL9A 1CZFA 3ZSCA 2Z8GA 1IA5A 4XM3A 4XOTA 4W8TA 3B8YA 1O8KA 3GQ7A 4MXNA 1O8DA 4YZ0A 1RWRA 4XMYA 2BSPA 4U49A 4XLHA 4YELA 3VMWA 2VJJA 3GQAA 2X85A 1NHCA 1O8HA 1GQ8A 2O04A 4W8SA 3VMVA 4YZAA 4XQFA 1EE6A 4MR0A 2INUA 2NSTA 1X0CA 4OJPA 4YZQA 4W8QA 4NK6A 1PLUA 4URRA 1QJVA 1PE9A 2NZMA 1JRGA 4Z06A 3ZPPA 3JURA 3VSVA 2NTBA 4U4BA 4NK8A 4AVZA 3EQOA 1O8LA 2ODLA 4OJ6A 3SUCA 1VBLA 4OJ5A 4XKWA 2PYHA 1DBGA 4YZXA 1RMGA 5C1CA 2VBKA 1OFLA 3VSUA 1OGMX 3GQ9A 1AIRA 2O0WA 4OZZA 1KCDA 3FY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H80 A;  1IDK A;  1BHE A;  2VBM A;  2INV A;  4OJO A;  4EW9 A;  2NTQ A;  1DBO A;  4Z03 A;  1O8F A;  3UW0 A;  4XLF A;  2UVE A;  1KTW A;  1O8E A;  2PYG A;  2X6W A;  3EQN A;  4PMH A;  1QCX A;  2EWE A;  4C2L A;  3VST A;  2X6Y A;  3T9G A;  1O8I A;  4XR6 A;  1RU4 A;  1HG8 A;  3LMW A;  3WWG A;  4XLE A;  1BN8 A;  2NSP A;  2O17 A;  4XNF A;  1IDJ A;  2X3H A;  5C1E A;  1WMR A;  4XN3 A;  1O8G A;  3KRG A;  4XOR A;  4XLC A;  2NT6 A;  2UVF A;  2QXZ A;  2NT9 A;  2QY1 A;  2VBE A;  4XON A;  2PEC A;  3B4N A;  4XOP A;  2X6X A;  1OFM A;  1O8M A;  4OZY A;  2NTP A;  1XG2 A;  1PXZ A;  2VJI A;  4I84 A;  4XLA A;  3GRH A;  5AMV A;  3GQ8 A;  4Z05 A;  4XN0 A;  1OGO X;  2O1D A;  4W8R A;  1IB4 A;  1JTA A;  3B90 A;  4OJL A;  4YEJ A;  2IQ7 A;  2QX3 A;  1O88 A;  2O0V A;  1K5C A;  4XKV A;  1KCC A;  1O8J A;  1OOC A;  4HWV A;  4XL9 A;  1CZF A;  3ZSC A;  2Z8G A;  1IA5 A;  4XM3 A;  4XOT A;  4W8T A;  3B8Y A;  1O8K A;  3GQ7 A;  4MXN A;  1O8D A;  4YZ0 A;  1RWR A;  4XMY A;  2BSP A;  4U49 A;  4XLH A;  4YEL A;  3VMW A;  2VJJ A;  3GQA A;  2X85 A;  1NHC A;  1O8H A;  1GQ8 A;  2O04 A;  4W8S A;  3VMV A;  4YZA A;  4XQF A;  1EE6 A;  4MR0 A;  2INU A;  2NST A;  1X0C A;  4OJP A;  4YZQ A;  4W8Q A;  4NK6 A;  1PLU A;  4URR A;  1QJV A;  1PE9 A;  2NZM A;  1JRG A;  4Z06 A;  3ZPP A;  3JUR A;  3VSV A;  2NTB A;  4U4B A;  4NK8 A;  4AVZ A;  3EQO A;  1O8L A;  2ODL A;  4OJ6 A;  3SUC A;  1VBL A;  4OJ5 A;  4XKW A;  2PYH A;  1DBG A;  4YZX A;  1RMG A;  5C1C A;  2VBK A;  1OFL A;  3VSU A;  1OGM X;  3GQ9 A;  1AIR A;  2O0W A;  4OZZ A;  1KCD A;  3FY3 A; 
#chains in the Genus database with same CATH topology
 1H80 A;  2VFP A;  1IDK A;  2VFQ A;  1BHE A;  2VBM A;  2VFO A;  1KQ5 A;  4OZZ A;  2INV A;  4OJO A;  4EW9 A;  2NTQ A;  1K4Z A;  1DBO A;  3NAW A;  4Z03 A;  1DAB A;  1O8F A;  3UW0 A;  2QZA A;  2B0R A;  4XLF A;  2UVE A;  3PSS A;  1KTW A;  1O8E A;  2XTX A;  2PYG A;  2X6W A;  2BM7 A;  3EQN A;  4PMH A;  1QCX A;  2EWE A;  1K8F A;  1QQ1 A;  1OFD A;  2BM5 A;  4C2L A;  3VST A;  2X6Y A;  3T9G A;  3SY2 A;  1O8I A;  4XR6 A;  4KH3 A;  1RU4 A;  2VFN A;  1HG8 A;  3LMW A;  1TYV A;  3SYJ A;  3WWG A;  3BH6 B;  1EZG A;  1BN8 A;  4XLE A;  2NSP A;  2O17 A;  2J8K A;  4XNF A;  4OM9 A;  1IDJ A;  2X3H A;  5C1E A;  1WMR A;  4XN3 A;  1O8G A;  3KRG A;  2BM6 A;  4XOR A;  3AK5 A;  3RIQ A;  4XLC A;  2NT6 A;  2UVF A;  2QXZ A;  2W7Z A;  1HF2 A;  2NT9 A;  2QY1 A;  2YUH A;  3DU1 X;  2VBE A;  4XON A;  2PEC A;  3B4N A;  4XOP A;  2X6X A;  1OFM A;  2XTW A;  1O8M A;  4OZY A;  1LLW A;  2NTP A;  1XG2 A;  1QA3 A;  1PXZ A;  3NB2 A;  2VJI A;  4I84 A;  4XLA A;  3PSZ A;  3GRH A;  5AMV A;  3GQ8 A;  4Z05 A;  4XN0 A;  1OGO X;  2O1D A;  3ML3 A;  4W8R A;  4YDT A;  1JTA A;  3B90 A;  4OJL A;  1IB4 A;  3JX8 A;  3PET A;  4YEJ A;  2IQ7 A;  2G0Y A;  2QX3 A;  2XT4 A;  2QYU A;  1O88 A;  2O0V A;  3H09 A;  1K5C A;  2XTY A;  4XKV A;  3BH7 B;  1KCC A;  3N90 A;  4V02 C;  1O8J A;  1OOC A;  2XT2 A;  4HWV A;  4XL9 A;  1CZF A;  3ZSC A;  5JMC B;  2Z8G A;  2O6W A;  1IA5 A;  1WXR A;  4XM3 A;  4XOT A;  4W8T A;  1TYX A;  3B8Y A;  4YEI A;  1O8K A;  1TYU A;  2VFM A;  3GQ7 A;  4MXN A;  1TYW A;  1O8D A;  4YZ0 A;  1RWR A;  1QRB A;  4XMY A;  4YCQ A;  2BSP A;  4JRA C;  4U49 A;  4XLH A;  4YEL A;  3VMW A;  2VJJ A;  3GQA A;  2X85 A;  1NHC A;  1O8H A;  1GQ8 A;  2O04 A;  4W8S A;  2XC1 A;  3VMV A;  4YZA A;  4XQF A;  3SQV A;  1EE6 A;  5JLV C;  3N6Z A;  4YFO A;  4MR0 A;  2INU A;  2NST A;  1X0C A;  4OJP A;  4YZQ A;  4W8Q A;  1QRC A;  4NK6 A;  1PLU A;  4URR A;  1QJV A;  3LJY A;  1PE9 A;  2NZM A;  1LM1 A;  1JRG A;  1EA0 A;  1LLZ A;  2J8I A;  4Z06 A;  3ZPP A;  2IOU G;  3JUR A;  3VSV A;  2NTB A;  2F3L A;  4U4B A;  4NK8 A;  3P4G A;  3EQO A;  1O8L A;  4AVZ A;  2ODL A;  3LYC A;  4OPW A;  4OJ6 A;  3SUC A;  1VBL A;  4OJ5 A;  4XKW A;  1OFE A;  2PYH A;  1QA2 A;  1CLW A;  1DBG A;  4YZX A;  1QA1 A;  1RMG A;  5DNS A;  2VBK A;  5C1C A;  1TSP A;  1OFL A;  4YC5 A;  3VSU A;  1OGM X;  3GQ9 A;  1AIR A;  2BM4 A;  3TH0 A;  2O0W A;  1L1I A;  2V5I A;  1KCD A;  2BX6 A;  3SZE A;  3FY3 A; 
#chains in the Genus database with same CATH homology
 1H80 A;  1IDK A;  1BHE A;  2VBM A;  2INV A;  4OJO A;  4EW9 A;  2NTQ A;  1DBO A;  4Z03 A;  1O8F A;  3UW0 A;  4XLF A;  2UVE A;  1KTW A;  1O8E A;  2PYG A;  2X6W A;  3EQN A;  4PMH A;  1QCX A;  2EWE A;  4C2L A;  3VST A;  2X6Y A;  3T9G A;  1O8I A;  4XR6 A;  1RU4 A;  1HG8 A;  3LMW A;  3WWG A;  4XLE A;  1BN8 A;  2NSP A;  2O17 A;  4XNF A;  1IDJ A;  2X3H A;  5C1E A;  1WMR A;  4XN3 A;  1O8G A;  3KRG A;  4XOR A;  4XLC A;  2NT6 A;  2UVF A;  2QXZ A;  2NT9 A;  2QY1 A;  2VBE A;  4XON A;  2PEC A;  3B4N A;  4XOP A;  2X6X A;  1OFM A;  1O8M A;  4OZY A;  2NTP A;  1XG2 A;  1PXZ A;  2VJI A;  4I84 A;  4XLA A;  3GRH A;  5AMV A;  3GQ8 A;  4Z05 A;  4XN0 A;  1OGO X;  2O1D A;  4W8R A;  1IB4 A;  1JTA A;  3B90 A;  4OJL A;  4YEJ A;  2IQ7 A;  2QX3 A;  1O88 A;  2O0V A;  1K5C A;  4XKV A;  1KCC A;  1O8J A;  1OOC A;  4HWV A;  4XL9 A;  1CZF A;  3ZSC A;  2Z8G A;  1IA5 A;  4XM3 A;  4XOT A;  4W8T A;  3B8Y A;  1O8K A;  3GQ7 A;  4MXN A;  1O8D A;  4YZ0 A;  1RWR A;  4XMY A;  2BSP A;  4U49 A;  4XLH A;  4YEL A;  3VMW A;  2VJJ A;  3GQA A;  2X85 A;  1NHC A;  1O8H A;  1GQ8 A;  2O04 A;  4W8S A;  3VMV A;  4YZA A;  4XQF A;  1EE6 A;  4MR0 A;  2INU A;  2NST A;  1X0C A;  4OJP A;  4YZQ A;  4W8Q A;  4NK6 A;  1PLU A;  4URR A;  1QJV A;  1PE9 A;  2NZM A;  1JRG A;  4Z06 A;  3ZPP A;  3JUR A;  3VSV A;  2NTB A;  4U4B A;  4NK8 A;  4AVZ A;  3EQO A;  1O8L A;  2ODL A;  4OJ6 A;  3SUC A;  1VBL A;  4OJ5 A;  4XKW A;  2PYH A;  1DBG A;  4YZX A;  1RMG A;  5C1C A;  2VBK A;  1OFL A;  3VSU A;  1OGM X;  3GQ9 A;  1AIR A;  2O0W A;  4OZZ A;  1KCD A;  3FY3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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