3LMWA

Crystal structure of iota-carrageenase family gh82 from a. fortis in absence of chloride ions
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
472
structure length
472
Chain Sequence
VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYARGNGGTRWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWERLEHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Iota-carrageenase, CgiA
publication title Identification of catalytic residues and mechanistic analysis of family GH82 iota-carrageenases
pubmed doi rcsb
source organism Alteromonas
total genus 160
structure length 472
sequence length 472
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3lmwA01
2VBMA 3T9GA 1IDJA 1OOCA 4C2LA 2BSPA 4W8SA 4XLFA 4XM3A 4OJOA 2NT6A 4URRA 1O8MA 1VBLA 2INUA 2UVEA 1PE9A 2NTPA 1QCXA 1O8HA 1RMGA 4OZZA 1CZFA 3B4NA 4XOPA 5AMVA 1BHEA 2NTBA 4YEJA 1RU4A 2O17A 4MR0A 4XQFA 2O1DA 1KCCA 1IB4A 1DBOA 3VSVA 3B8YA 2ODLA 1OFMA 2O0VA 2Z8GA 4Z05A 2VJJA 2X6YA 4XR6A 4Z03A 2X3HA 4I84A 2QXZA 3FY3A 3B90A 4YZXA 3JURA 1O8EA 2NTQA 3LMWA 4XL9A 4XLCA 1PLUA 1NHCA 2NSTA 2QY1A 4YZAA 2X6WA 3ZPPA 1K5CA 2VJIA 2O04A 4XN0A 2PYHA 4MXNA 4W8TA 1OGOX 1RWRA 4OJLA 1DBGA 2INVA 4YZ0A 2PECA 4XKVA 2IQ7A 1H80A 1PXZA 2NT9A 3EQNA 4OJ6A 3VSUA 1EE6A 2X6XA 2PYGA 1GQ8A 4XLAA 1BN8A 4XNFA 2NSPA 4U49A 1AIRA 1O88A 2VBEA 1HG8A 1O8GA 4AVZA 4XLHA 4XONA 3KRGA 3VMWA 4OJPA 1O8FA 4XORA 4HWVA 3VMVA 4EW9A 5C1CA 3SUCA 2QX3A 4PMHA 2VBKA 4XOTA 1JRGA 1WMRA 1OGMX 3UW0A 1O8JA 4W8RA 1O8LA 1IDKA 4Z06A 3GRHA 1KTWA 1XG2A 3GQ7A 3GQ8A 1IA5A 1X0CA 1JTAA 2O0WA 1KCDA 3GQ9A 2X85A 2EWEA 1OFLA 4XKWA 1QJVA 1O8IA 4NK6A 3ZSCA 4YZQA 4YELA 5C1EA 4NK8A 4XMYA 4OJ5A 4XLEA 4XN3A 2NZMA 3EQOA 4U4BA 3WWGA 2UVFA 1O8KA 4W8QA 4OZYA 1O8DA 3GQAA 3VSTA
chains in the Genus database with same CATH superfamily
2VBMA 3T9GA 1IDJA 1OOCA 4C2LA 2BSPA 4W8SA 4XLFA 4XM3A 2VFOA 2NT6A 4OJOA 3LYCA 4URRA 1KQ5A 1O8MA 1VBLA 2INUA 2NTPA 1PE9A 2B0RA 2UVEA 3SQVA 1QA2A 1QCXA 3NB2A 1O8HA 1LM1A 1RMGA 4OZZA 1EZGA 1CZFA 3B4NA 4XOPA 3BH7B 5AMVA 2VFPA 1K4ZA 1BHEA 2NTBA 4YEJA 2VFMA 1RU4A 2O17A 4MR0A 4XQFA 2O1DA 4OPWA 1CLWA 1KCCA 1IB4A 1DBOA 3VSVA 3B8YA 2ODLA 1OFMA 2BX6A 2O0VA 2Z8GA 4YDTA 4Z05A 2VJJA 2X6YA 1L1IA 4XR6A 4Z03A 2X3HA 4I84A 2QXZA 3FY3A 3B90A 3N6ZA 4YZXA 3JURA 1O8EA 4YEIA 2NTQA 3LMWA 4XL9A 4XLCA 1PLUA 4YFOA 3DU1X 1NHCA 2NSTA 2QY1A 2XT2A 4YZAA 2X6WA 3ZPPA 1K5CA 2J8IA 2VJIA 1WXRA 5JMCB 2O04A 4XN0A 1TYUA 2PYHA 2XTWA 4MXNA 4W8TA 1OGOX 2XTXA 1QA3A 1RWRA 3AK5A 4OJLA 2XT4A 1DBGA 2INVA 4JRAC 4YZ0A 2BM5A 2PECA 3TH0A 2XTYA 2YUHA 4XKVA 2IOUG 2IQ7A 1H80A 1PXZA 2NT9A 2O6WA 2J8KA 3EQNA 2V5IA 4OJ6A 3VSUA 1EE6A 2X6XA 2PYGA 1QQ1A 1TYXA 1GQ8A 1EA0A 2VFNA 4XLAA 1BN8A 4XNFA 2NSPA 4V02C 4U49A 1LLZA 3RIQA 1AIRA 1O88A 2VBEA 2VFQA 1HG8A 1O8GA 4AVZA 4XLHA 1TYWA 4XONA 3KRGA 3VMWA 4OM9A 4OJPA 1O8FA 4XORA 4HWVA 3VMVA 3N90A 4EW9A 5C1CA 3SUCA 2QX3A 3LJYA 4PMHA 2VBKA 4XOTA 1JRGA 1WMRA 1OGMX 3UW0A 1O8JA 4W8RA 1O8LA 1DABA 2QYUA 2F3LA 2QZAA 1IDKA 3H09A 4YCQA 4Z06A 3GRHA 1QRCA 1KTWA 1XG2A 3GQ7A 3JX8A 3GQ8A 1IA5A 1X0CA 1JTAA 2O0WA 2W7ZA 3ML3A 1KCDA 5DNSA 1TYVA 3GQ9A 2X85A 3NAWA 2EWEA 1OFLA 4XKWA 1QJVA 4YC5A 1LLWA 3P4GA 1O8IA 1QRBA 4NK6A 3PSZA 2BM4A 3PSSA 4KH3A 4YZQA 4YELA 3ZSCA 1QA1A 2BM7A 5C1EA 4NK8A 2G0YA 4XMYA 4OJ5A 3SYJA 4XLEA 3PETA 4XN3A 2NZMA 3EQOA 1OFEA 2XC1A 4U4BA 1HF2A 3SZEA 3WWGA 2UVFA 1O8KA 3BH6B 1K8FA 4W8QA 1OFDA 4OZYA 1O8DA 3GQAA 3SY2A 3VSTA 5JLVC 2BM6A 1TSPA
chains in the Genus database with same CATH topology
2VBMA 3T9GA 1IDJA 1OOCA 4C2LA 2BSPA 4W8SA 4XLFA 4XM3A 4OJOA 2NT6A 4URRA 1O8MA 1VBLA 2INUA 2UVEA 1PE9A 2NTPA 1QCXA 1O8HA 1RMGA 4OZZA 1CZFA 3B4NA 4XOPA 5AMVA 1BHEA 2NTBA 4YEJA 1RU4A 2O17A 4MR0A 4XQFA 2O1DA 1KCCA 1IB4A 1DBOA 3VSVA 3B8YA 2ODLA 1OFMA 2O0VA 2Z8GA 4Z05A 2VJJA 2X6YA 4XR6A 4Z03A 2X3HA 4I84A 2QXZA 3FY3A 3B90A 4YZXA 3JURA 1O8EA 2NTQA 3LMWA 4XL9A 4XLCA 1PLUA 1NHCA 2NSTA 2QY1A 4YZAA 2X6WA 3ZPPA 1K5CA 2VJIA 2O04A 4XN0A 2PYHA 4MXNA 4W8TA 1OGOX 1RWRA 4OJLA 1DBGA 2INVA 4YZ0A 2PECA 4XKVA 2IQ7A 1H80A 1PXZA 2NT9A 3EQNA 4OJ6A 3VSUA 1EE6A 2X6XA 2PYGA 1GQ8A 4XLAA 1BN8A 4XNFA 2NSPA 4U49A 1AIRA 1O88A 2VBEA 1HG8A 1O8GA 4AVZA 4XLHA 4XONA 3KRGA 3VMWA 4OJPA 1O8FA 4XORA 4HWVA 3VMVA 4EW9A 5C1CA 3SUCA 2QX3A 4PMHA 2VBKA 4XOTA 1JRGA 1WMRA 1OGMX 3UW0A 1O8JA 4W8RA 1O8LA 1IDKA 4Z06A 3GRHA 1KTWA 1XG2A 3GQ7A 3GQ8A 1IA5A 1X0CA 1JTAA 2O0WA 1KCDA 3GQ9A 2X85A 2EWEA 1OFLA 4XKWA 1QJVA 1O8IA 4NK6A 3ZSCA 4YZQA 4YELA 5C1EA 4NK8A 4XMYA 4OJ5A 4XLEA 4XN3A 2NZMA 3EQOA 4U4BA 3WWGA 2UVFA 1O8KA 4W8QA 4OZYA 1O8DA 3GQAA 3VSTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VBM A;  3T9G A;  1IDJ A;  1OOC A;  4C2L A;  2BSP A;  4W8S A;  4XLF A;  4XM3 A;  4OJO A;  2NT6 A;  4URR A;  1O8M A;  1VBL A;  2INU A;  2UVE A;  1PE9 A;  2NTP A;  1QCX A;  1O8H A;  1RMG A;  4OZZ A;  1CZF A;  3B4N A;  4XOP A;  5AMV A;  1BHE A;  2NTB A;  4YEJ A;  1RU4 A;  2O17 A;  4MR0 A;  4XQF A;  2O1D A;  1KCC A;  1IB4 A;  1DBO A;  3VSV A;  3B8Y A;  2ODL A;  1OFM A;  2O0V A;  2Z8G A;  4Z05 A;  2VJJ A;  2X6Y A;  4XR6 A;  4Z03 A;  2X3H A;  4I84 A;  2QXZ A;  3FY3 A;  3B90 A;  4YZX A;  3JUR A;  1O8E A;  2NTQ A;  3LMW A;  4XL9 A;  4XLC A;  1PLU A;  1NHC A;  2NST A;  2QY1 A;  4YZA A;  2X6W A;  3ZPP A;  1K5C A;  2VJI A;  2O04 A;  4XN0 A;  2PYH A;  4MXN A;  4W8T A;  1OGO X;  1RWR A;  4OJL A;  1DBG A;  2INV A;  4YZ0 A;  2PEC A;  4XKV A;  2IQ7 A;  1H80 A;  1PXZ A;  2NT9 A;  3EQN A;  4OJ6 A;  3VSU A;  1EE6 A;  2X6X A;  2PYG A;  1GQ8 A;  4XLA A;  1BN8 A;  4XNF A;  2NSP A;  4U49 A;  1AIR A;  1O88 A;  2VBE A;  1HG8 A;  1O8G A;  4AVZ A;  4XLH A;  4XON A;  3KRG A;  3VMW A;  4OJP A;  1O8F A;  4XOR A;  4HWV A;  3VMV A;  4EW9 A;  5C1C A;  3SUC A;  2QX3 A;  4PMH A;  2VBK A;  4XOT A;  1JRG A;  1WMR A;  1OGM X;  3UW0 A;  1O8J A;  4W8R A;  1O8L A;  1IDK A;  4Z06 A;  3GRH A;  1KTW A;  1XG2 A;  3GQ7 A;  3GQ8 A;  1IA5 A;  1X0C A;  1JTA A;  2O0W A;  1KCD A;  3GQ9 A;  2X85 A;  2EWE A;  1OFL A;  4XKW A;  1QJV A;  1O8I A;  4NK6 A;  3ZSC A;  4YZQ A;  4YEL A;  5C1E A;  4NK8 A;  4XMY A;  4OJ5 A;  4XLE A;  4XN3 A;  2NZM A;  3EQO A;  4U4B A;  3WWG A;  2UVF A;  1O8K A;  4W8Q A;  4OZY A;  1O8D A;  3GQA A;  3VST A; 
#chains in the Genus database with same CATH topology
 2VBM A;  3T9G A;  1IDJ A;  1OOC A;  4C2L A;  2BSP A;  4W8S A;  4XLF A;  4XM3 A;  2VFO A;  2NT6 A;  4OJO A;  3LYC A;  4URR A;  1KQ5 A;  1O8M A;  1VBL A;  2INU A;  2NTP A;  1PE9 A;  2B0R A;  2UVE A;  3SQV A;  1QA2 A;  1QCX A;  3NB2 A;  1O8H A;  1LM1 A;  1RMG A;  4OZZ A;  1EZG A;  1CZF A;  3B4N A;  4XOP A;  3BH7 B;  5AMV A;  2VFP A;  1K4Z A;  1BHE A;  2NTB A;  4YEJ A;  2VFM A;  1RU4 A;  2O17 A;  4MR0 A;  4XQF A;  2O1D A;  4OPW A;  1CLW A;  1KCC A;  1IB4 A;  1DBO A;  3VSV A;  3B8Y A;  2ODL A;  1OFM A;  2BX6 A;  2O0V A;  2Z8G A;  4YDT A;  4Z05 A;  2VJJ A;  2X6Y A;  1L1I A;  4XR6 A;  4Z03 A;  2X3H A;  4I84 A;  2QXZ A;  3FY3 A;  3B90 A;  3N6Z A;  4YZX A;  3JUR A;  1O8E A;  4YEI A;  2NTQ A;  3LMW A;  4XL9 A;  4XLC A;  1PLU A;  4YFO A;  3DU1 X;  1NHC A;  2NST A;  2QY1 A;  2XT2 A;  4YZA A;  2X6W A;  3ZPP A;  1K5C A;  2J8I A;  2VJI A;  1WXR A;  5JMC B;  2O04 A;  4XN0 A;  1TYU A;  2PYH A;  2XTW A;  4MXN A;  4W8T A;  1OGO X;  2XTX A;  1QA3 A;  1RWR A;  3AK5 A;  4OJL A;  2XT4 A;  1DBG A;  2INV A;  4JRA C;  4YZ0 A;  2BM5 A;  2PEC A;  3TH0 A;  2XTY A;  2YUH A;  4XKV A;  2IOU G;  2IQ7 A;  1H80 A;  1PXZ A;  2NT9 A;  2O6W A;  2J8K A;  3EQN A;  2V5I A;  4OJ6 A;  3VSU A;  1EE6 A;  2X6X A;  2PYG A;  1QQ1 A;  1TYX A;  1GQ8 A;  1EA0 A;  2VFN A;  4XLA A;  1BN8 A;  4XNF A;  2NSP A;  4V02 C;  4U49 A;  1LLZ A;  3RIQ A;  1AIR A;  1O88 A;  2VBE A;  2VFQ A;  1HG8 A;  1O8G A;  4AVZ A;  4XLH A;  1TYW A;  4XON A;  3KRG A;  3VMW A;  4OM9 A;  4OJP A;  1O8F A;  4XOR A;  4HWV A;  3VMV A;  3N90 A;  4EW9 A;  5C1C A;  3SUC A;  2QX3 A;  3LJY A;  4PMH A;  2VBK A;  4XOT A;  1JRG A;  1WMR A;  1OGM X;  3UW0 A;  1O8J A;  4W8R A;  1O8L A;  1DAB A;  2QYU A;  2F3L A;  2QZA A;  1IDK A;  3H09 A;  4YCQ A;  4Z06 A;  3GRH A;  1QRC A;  1KTW A;  1XG2 A;  3GQ7 A;  3JX8 A;  3GQ8 A;  1IA5 A;  1X0C A;  1JTA A;  2O0W A;  2W7Z A;  3ML3 A;  1KCD A;  5DNS A;  1TYV A;  3GQ9 A;  2X85 A;  3NAW A;  2EWE A;  1OFL A;  4XKW A;  1QJV A;  4YC5 A;  1LLW A;  3P4G A;  1O8I A;  1QRB A;  4NK6 A;  3PSZ A;  2BM4 A;  3PSS A;  4KH3 A;  4YZQ A;  4YEL A;  3ZSC A;  1QA1 A;  2BM7 A;  5C1E A;  4NK8 A;  2G0Y A;  4XMY A;  4OJ5 A;  3SYJ A;  4XLE A;  3PET A;  4XN3 A;  2NZM A;  3EQO A;  1OFE A;  2XC1 A;  4U4B A;  1HF2 A;  3SZE A;  3WWG A;  2UVF A;  1O8K A;  3BH6 B;  1K8F A;  4W8Q A;  1OFD A;  4OZY A;  1O8D A;  3GQA A;  3SY2 A;  3VST A;  5JLV C;  2BM6 A;  1TSP A; 
#chains in the Genus database with same CATH homology
 2VBM A;  3T9G A;  1IDJ A;  1OOC A;  4C2L A;  2BSP A;  4W8S A;  4XLF A;  4XM3 A;  4OJO A;  2NT6 A;  4URR A;  1O8M A;  1VBL A;  2INU A;  2UVE A;  1PE9 A;  2NTP A;  1QCX A;  1O8H A;  1RMG A;  4OZZ A;  1CZF A;  3B4N A;  4XOP A;  5AMV A;  1BHE A;  2NTB A;  4YEJ A;  1RU4 A;  2O17 A;  4MR0 A;  4XQF A;  2O1D A;  1KCC A;  1IB4 A;  1DBO A;  3VSV A;  3B8Y A;  2ODL A;  1OFM A;  2O0V A;  2Z8G A;  4Z05 A;  2VJJ A;  2X6Y A;  4XR6 A;  4Z03 A;  2X3H A;  4I84 A;  2QXZ A;  3FY3 A;  3B90 A;  4YZX A;  3JUR A;  1O8E A;  2NTQ A;  3LMW A;  4XL9 A;  4XLC A;  1PLU A;  1NHC A;  2NST A;  2QY1 A;  4YZA A;  2X6W A;  3ZPP A;  1K5C A;  2VJI A;  2O04 A;  4XN0 A;  2PYH A;  4MXN A;  4W8T A;  1OGO X;  1RWR A;  4OJL A;  1DBG A;  2INV A;  4YZ0 A;  2PEC A;  4XKV A;  2IQ7 A;  1H80 A;  1PXZ A;  2NT9 A;  3EQN A;  4OJ6 A;  3VSU A;  1EE6 A;  2X6X A;  2PYG A;  1GQ8 A;  4XLA A;  1BN8 A;  4XNF A;  2NSP A;  4U49 A;  1AIR A;  1O88 A;  2VBE A;  1HG8 A;  1O8G A;  4AVZ A;  4XLH A;  4XON A;  3KRG A;  3VMW A;  4OJP A;  1O8F A;  4XOR A;  4HWV A;  3VMV A;  4EW9 A;  5C1C A;  3SUC A;  2QX3 A;  4PMH A;  2VBK A;  4XOT A;  1JRG A;  1WMR A;  1OGM X;  3UW0 A;  1O8J A;  4W8R A;  1O8L A;  1IDK A;  4Z06 A;  3GRH A;  1KTW A;  1XG2 A;  3GQ7 A;  3GQ8 A;  1IA5 A;  1X0C A;  1JTA A;  2O0W A;  1KCD A;  3GQ9 A;  2X85 A;  2EWE A;  1OFL A;  4XKW A;  1QJV A;  1O8I A;  4NK6 A;  3ZSC A;  4YZQ A;  4YEL A;  5C1E A;  4NK8 A;  4XMY A;  4OJ5 A;  4XLE A;  4XN3 A;  2NZM A;  3EQO A;  4U4B A;  3WWG A;  2UVF A;  1O8K A;  4W8Q A;  4OZY A;  1O8D A;  3GQA A;  3VST A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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