3KRGA

Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2009-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3krgA00
2NSTA 1O8HA 4XQFA 4XOTA 3EQOA 3KRGA 2O0WA 3WWGA 2O04A 1BN8A 1GQ8A 1IB4A 2INUA 4XLFA 4OJPA 4AVZA 3FY3A 2O17A 4YZAA 4OJ5A 2INVA 3VSUA 1O8GA 3VMVA 2NZMA 1AIRA 3LMWA 1PXZA 4XLCA 1PE9A 4OZZA 4XORA 1O8KA 1O8IA 4EW9A 1IDKA 2VJJA 4OJOA 4XOPA 4XMYA 1PLUA 2QXZA 1IDJA 2X6WA 3JURA 4YELA 3B4NA 2QY1A 1JRGA 2VBMA 2NTQA 1BHEA 1O8EA 2O1DA 2VBEA 3ZPPA 1RU4A 2BSPA 1DBGA 1XG2A 2UVEA 4OJ6A 4XLHA 4C2LA 4XLEA 4XR6A 2ODLA 2PYHA 1KTWA 1O88A 3GRHA 2NTBA 1O8DA 4NK8A 1O8MA 3ZSCA 2Z8GA 1OFLA 4W8RA 1VBLA 4NK6A 2X6YA 4XM3A 2X6XA 4U49A 3GQAA 1H80A 1KCDA 1X0CA 2UVFA 4XONA 2NT6A 4I84A 4W8TA 2QX3A 4MR0A 1DBOA 1EE6A 4W8SA 4XLAA 4MXNA 2NTPA 2PYGA 3GQ9A 3GQ8A 5AMVA 1O8FA 1OGMX 1K5CA 1NHCA 2PECA 4XKVA 4XL9A 1HG8A 2IQ7A 2VBKA 2X3HA 4Z05A 4XN3A 4OJLA 4URRA 4W8QA 4XNFA 4YZXA 4U4BA 2NSPA 3B8YA 3UW0A 3B90A 2X85A 3VSTA 1WMRA 1CZFA 1O8JA 2NT9A 4XKWA 3SUCA 2O0VA 4Z03A 2EWEA 1OFMA 4YZ0A 1OOCA 1QJVA 1RMGA 5C1CA 5C1EA 4OZYA 1KCCA 1RWRA 3GQ7A 4YZQA 3VMWA 1QCXA 4HWVA 4XN0A 3VSVA 1OGOX 3T9GA 4Z06A 2VJIA 3EQNA 1O8LA 1IA5A 4YEJA 1JTAA 4PMHA
chains in the Genus database with same CATH superfamily
3SQVA 2NSTA 1O8HA 4XQFA 4XOTA 3EQOA 2B0RA 3KRGA 4JRAC 2O0WA 2BX6A 3WWGA 1DABA 2O04A 1BN8A 1GQ8A 2XT4A 1IB4A 2INUA 3DU1X 4XLFA 3BH6B 4OJPA 4AVZA 2VFOA 3FY3A 4OPWA 2O17A 4YZAA 4OJ5A 2INVA 1QA2A 2O6WA 3VSUA 1O8GA 3AK5A 3VMVA 2NZMA 1AIRA 3LMWA 4KH3A 1PXZA 4XLCA 2XTXA 1PE9A 1EA0A 4OZZA 4XORA 1O8KA 2F3LA 1O8IA 4EW9A 1IDKA 2VJJA 4OJOA 4XOPA 4XMYA 1PLUA 2QXZA 1IDJA 2W7ZA 2X6WA 3JURA 3LJYA 3B4NA 4YELA 2QY1A 3SY2A 3SZEA 1QA1A 2BM5A 1JRGA 2VBMA 2NTQA 2XT2A 1LLWA 1BHEA 1O8EA 2O1DA 1TYVA 2VBEA 3ZPPA 1RU4A 2BSPA 1DBGA 1XG2A 2J8IA 2UVEA 3TH0A 4OJ6A 4XLHA 4C2LA 4YFOA 4XLEA 1QRCA 3N90A 4XR6A 2ODLA 3PETA 2PYHA 1KTWA 3PSZA 2XTWA 1O88A 3GRHA 2NTBA 1O8DA 4NK8A 1O8MA 2YUHA 2Z8GA 3ZSCA 1OFLA 1LM1A 4W8RA 1VBLA 3N6ZA 2X6YA 4NK6A 4XM3A 2X6XA 4U49A 3GQAA 1H80A 5JLVC 1X0CA 2UVFA 4XONA 4YC5A 1OFEA 1KCDA 2NT6A 4YEIA 2VFMA 3ML3A 4I84A 2QX3A 4MR0A 4W8TA 1DBOA 1EE6A 4W8SA 1EZGA 4MXNA 4XLAA 4YDTA 1CLWA 2NTPA 2PYGA 3GQ9A 2BM7A 3NAWA 1K8FA 3PSSA 3GQ8A 5AMVA 1O8FA 1OGMX 3NB2A 3SYJA 2IOUG 2XC1A 2PECA 2XTYA 1K5CA 1NHCA 1QA3A 2VFNA 4XKVA 1KQ5A 3LYCA 4XL9A 1HG8A 3RIQA 2G0YA 2IQ7A 2VBKA 4YCQA 2BM6A 2X3HA 4Z05A 4XN3A 4OJLA 4URRA 3JX8A 4W8QA 4XNFA 4YZXA 4U4BA 4V02C 2NSPA 3B8YA 3UW0A 1L1IA 3B90A 2QZAA 2J8KA 2X85A 1WMRA 3VSTA 1CZFA 1LLZA 1O8JA 2NT9A 4XKWA 1TYUA 3SUCA 2O0VA 3BH7B 1WXRA 4Z03A 1QQ1A 1OFMA 2EWEA 1TYXA 4YZ0A 1HF2A 1OOCA 1QJVA 1RMGA 1TYWA 2BM4A 5C1CA 5C1EA 1K4ZA 1OFDA 1QRBA 4OZYA 1KCCA 1RWRA 2QYUA 3GQ7A 4OM9A 4YZQA 2V5IA 1QCXA 2VFPA 4HWVA 4XN0A 3VMWA 3VSVA 1OGOX 3P4GA 5JMCB 1TSPA 3H09A 3T9GA 4Z06A 2VJIA 3EQNA 2VFQA 1O8LA 5DNSA 4YEJA 1IA5A 1JTAA 4PMHA
chains in the Genus database with same CATH topology
2NSTA 1O8HA 4XQFA 4XOTA 3EQOA 3KRGA 2O0WA 3WWGA 2O04A 1BN8A 1GQ8A 1IB4A 2INUA 4XLFA 4OJPA 4AVZA 3FY3A 2O17A 4YZAA 4OJ5A 2INVA 3VSUA 1O8GA 3VMVA 2NZMA 1AIRA 3LMWA 1PXZA 4XLCA 1PE9A 4OZZA 4XORA 1O8KA 1O8IA 4EW9A 1IDKA 2VJJA 4OJOA 4XOPA 4XMYA 1PLUA 2QXZA 1IDJA 2X6WA 3JURA 4YELA 3B4NA 2QY1A 1JRGA 2VBMA 2NTQA 1BHEA 1O8EA 2O1DA 2VBEA 3ZPPA 1RU4A 2BSPA 1DBGA 1XG2A 2UVEA 4OJ6A 4XLHA 4C2LA 4XLEA 4XR6A 2ODLA 2PYHA 1KTWA 1O88A 3GRHA 2NTBA 1O8DA 4NK8A 1O8MA 3ZSCA 2Z8GA 1OFLA 4W8RA 1VBLA 4NK6A 2X6YA 4XM3A 2X6XA 4U49A 3GQAA 1H80A 1KCDA 1X0CA 2UVFA 4XONA 2NT6A 4I84A 4W8TA 2QX3A 4MR0A 1DBOA 1EE6A 4W8SA 4XLAA 4MXNA 2NTPA 2PYGA 3GQ9A 3GQ8A 5AMVA 1O8FA 1OGMX 1K5CA 1NHCA 2PECA 4XKVA 4XL9A 1HG8A 2IQ7A 2VBKA 2X3HA 4Z05A 4XN3A 4OJLA 4URRA 4W8QA 4XNFA 4YZXA 4U4BA 2NSPA 3B8YA 3UW0A 3B90A 2X85A 3VSTA 1WMRA 1CZFA 1O8JA 2NT9A 4XKWA 3SUCA 2O0VA 4Z03A 2EWEA 1OFMA 4YZ0A 1OOCA 1QJVA 1RMGA 5C1CA 5C1EA 4OZYA 1KCCA 1RWRA 3GQ7A 4YZQA 3VMWA 1QCXA 4HWVA 4XN0A 3VSVA 1OGOX 3T9GA 4Z06A 2VJIA 3EQNA 1O8LA 1IA5A 4YEJA 1JTAA 4PMHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NST A;  1O8H A;  4XQF A;  4XOT A;  3EQO A;  3KRG A;  2O0W A;  3WWG A;  2O04 A;  1BN8 A;  1GQ8 A;  1IB4 A;  2INU A;  4XLF A;  4OJP A;  4AVZ A;  3FY3 A;  2O17 A;  4YZA A;  4OJ5 A;  2INV A;  3VSU A;  1O8G A;  3VMV A;  2NZM A;  1AIR A;  3LMW A;  1PXZ A;  4XLC A;  1PE9 A;  4OZZ A;  4XOR A;  1O8K A;  1O8I A;  4EW9 A;  1IDK A;  2VJJ A;  4OJO A;  4XOP A;  4XMY A;  1PLU A;  2QXZ A;  1IDJ A;  2X6W A;  3JUR A;  4YEL A;  3B4N A;  2QY1 A;  1JRG A;  2VBM A;  2NTQ A;  1BHE A;  1O8E A;  2O1D A;  2VBE A;  3ZPP A;  1RU4 A;  2BSP A;  1DBG A;  1XG2 A;  2UVE A;  4OJ6 A;  4XLH A;  4C2L A;  4XLE A;  4XR6 A;  2ODL A;  2PYH A;  1KTW A;  1O88 A;  3GRH A;  2NTB A;  1O8D A;  4NK8 A;  1O8M A;  3ZSC A;  2Z8G A;  1OFL A;  4W8R A;  1VBL A;  4NK6 A;  2X6Y A;  4XM3 A;  2X6X A;  4U49 A;  3GQA A;  1H80 A;  1KCD A;  1X0C A;  2UVF A;  4XON A;  2NT6 A;  4I84 A;  4W8T A;  2QX3 A;  4MR0 A;  1DBO A;  1EE6 A;  4W8S A;  4XLA A;  4MXN A;  2NTP A;  2PYG A;  3GQ9 A;  3GQ8 A;  5AMV A;  1O8F A;  1OGM X;  1K5C A;  1NHC A;  2PEC A;  4XKV A;  4XL9 A;  1HG8 A;  2IQ7 A;  2VBK A;  2X3H A;  4Z05 A;  4XN3 A;  4OJL A;  4URR A;  4W8Q A;  4XNF A;  4YZX A;  4U4B A;  2NSP A;  3B8Y A;  3UW0 A;  3B90 A;  2X85 A;  3VST A;  1WMR A;  1CZF A;  1O8J A;  2NT9 A;  4XKW A;  3SUC A;  2O0V A;  4Z03 A;  2EWE A;  1OFM A;  4YZ0 A;  1OOC A;  1QJV A;  1RMG A;  5C1C A;  5C1E A;  4OZY A;  1KCC A;  1RWR A;  3GQ7 A;  4YZQ A;  3VMW A;  1QCX A;  4HWV A;  4XN0 A;  3VSV A;  1OGO X;  3T9G A;  4Z06 A;  2VJI A;  3EQN A;  1O8L A;  1IA5 A;  4YEJ A;  1JTA A;  4PMH A; 
#chains in the Genus database with same CATH topology
 3SQV A;  2NST A;  1O8H A;  4XQF A;  4XOT A;  3EQO A;  2B0R A;  3KRG A;  4JRA C;  2O0W A;  2BX6 A;  3WWG A;  1DAB A;  2O04 A;  1BN8 A;  1GQ8 A;  2XT4 A;  1IB4 A;  2INU A;  3DU1 X;  4XLF A;  3BH6 B;  4OJP A;  4AVZ A;  2VFO A;  3FY3 A;  4OPW A;  2O17 A;  4YZA A;  4OJ5 A;  2INV A;  1QA2 A;  2O6W A;  3VSU A;  1O8G A;  3AK5 A;  3VMV A;  2NZM A;  1AIR A;  3LMW A;  4KH3 A;  1PXZ A;  4XLC A;  2XTX A;  1PE9 A;  1EA0 A;  4OZZ A;  4XOR A;  1O8K A;  2F3L A;  1O8I A;  4EW9 A;  1IDK A;  2VJJ A;  4OJO A;  4XOP A;  4XMY A;  1PLU A;  2QXZ A;  1IDJ A;  2W7Z A;  2X6W A;  3JUR A;  3LJY A;  3B4N A;  4YEL A;  2QY1 A;  3SY2 A;  3SZE A;  1QA1 A;  2BM5 A;  1JRG A;  2VBM A;  2NTQ A;  2XT2 A;  1LLW A;  1BHE A;  1O8E A;  2O1D A;  1TYV A;  2VBE A;  3ZPP A;  1RU4 A;  2BSP A;  1DBG A;  1XG2 A;  2J8I A;  2UVE A;  3TH0 A;  4OJ6 A;  4XLH A;  4C2L A;  4YFO A;  4XLE A;  1QRC A;  3N90 A;  4XR6 A;  2ODL A;  3PET A;  2PYH A;  1KTW A;  3PSZ A;  2XTW A;  1O88 A;  3GRH A;  2NTB A;  1O8D A;  4NK8 A;  1O8M A;  2YUH A;  2Z8G A;  3ZSC A;  1OFL A;  1LM1 A;  4W8R A;  1VBL A;  3N6Z A;  2X6Y A;  4NK6 A;  4XM3 A;  2X6X A;  4U49 A;  3GQA A;  1H80 A;  5JLV C;  1X0C A;  2UVF A;  4XON A;  4YC5 A;  1OFE A;  1KCD A;  2NT6 A;  4YEI A;  2VFM A;  3ML3 A;  4I84 A;  2QX3 A;  4MR0 A;  4W8T A;  1DBO A;  1EE6 A;  4W8S A;  1EZG A;  4MXN A;  4XLA A;  4YDT A;  1CLW A;  2NTP A;  2PYG A;  3GQ9 A;  2BM7 A;  3NAW A;  1K8F A;  3PSS A;  3GQ8 A;  5AMV A;  1O8F A;  1OGM X;  3NB2 A;  3SYJ A;  2IOU G;  2XC1 A;  2PEC A;  2XTY A;  1K5C A;  1NHC A;  1QA3 A;  2VFN A;  4XKV A;  1KQ5 A;  3LYC A;  4XL9 A;  1HG8 A;  3RIQ A;  2G0Y A;  2IQ7 A;  2VBK A;  4YCQ A;  2BM6 A;  2X3H A;  4Z05 A;  4XN3 A;  4OJL A;  4URR A;  3JX8 A;  4W8Q A;  4XNF A;  4YZX A;  4U4B A;  4V02 C;  2NSP A;  3B8Y A;  3UW0 A;  1L1I A;  3B90 A;  2QZA A;  2J8K A;  2X85 A;  1WMR A;  3VST A;  1CZF A;  1LLZ A;  1O8J A;  2NT9 A;  4XKW A;  1TYU A;  3SUC A;  2O0V A;  3BH7 B;  1WXR A;  4Z03 A;  1QQ1 A;  1OFM A;  2EWE A;  1TYX A;  4YZ0 A;  1HF2 A;  1OOC A;  1QJV A;  1RMG A;  1TYW A;  2BM4 A;  5C1C A;  5C1E A;  1K4Z A;  1OFD A;  1QRB A;  4OZY A;  1KCC A;  1RWR A;  2QYU A;  3GQ7 A;  4OM9 A;  4YZQ A;  2V5I A;  1QCX A;  2VFP A;  4HWV A;  4XN0 A;  3VMW A;  3VSV A;  1OGO X;  3P4G A;  5JMC B;  1TSP A;  3H09 A;  3T9G A;  4Z06 A;  2VJI A;  3EQN A;  2VFQ A;  1O8L A;  5DNS A;  4YEJ A;  1IA5 A;  1JTA A;  4PMH A; 
#chains in the Genus database with same CATH homology
 2NST A;  1O8H A;  4XQF A;  4XOT A;  3EQO A;  3KRG A;  2O0W A;  3WWG A;  2O04 A;  1BN8 A;  1GQ8 A;  1IB4 A;  2INU A;  4XLF A;  4OJP A;  4AVZ A;  3FY3 A;  2O17 A;  4YZA A;  4OJ5 A;  2INV A;  3VSU A;  1O8G A;  3VMV A;  2NZM A;  1AIR A;  3LMW A;  1PXZ A;  4XLC A;  1PE9 A;  4OZZ A;  4XOR A;  1O8K A;  1O8I A;  4EW9 A;  1IDK A;  2VJJ A;  4OJO A;  4XOP A;  4XMY A;  1PLU A;  2QXZ A;  1IDJ A;  2X6W A;  3JUR A;  4YEL A;  3B4N A;  2QY1 A;  1JRG A;  2VBM A;  2NTQ A;  1BHE A;  1O8E A;  2O1D A;  2VBE A;  3ZPP A;  1RU4 A;  2BSP A;  1DBG A;  1XG2 A;  2UVE A;  4OJ6 A;  4XLH A;  4C2L A;  4XLE A;  4XR6 A;  2ODL A;  2PYH A;  1KTW A;  1O88 A;  3GRH A;  2NTB A;  1O8D A;  4NK8 A;  1O8M A;  3ZSC A;  2Z8G A;  1OFL A;  4W8R A;  1VBL A;  4NK6 A;  2X6Y A;  4XM3 A;  2X6X A;  4U49 A;  3GQA A;  1H80 A;  1KCD A;  1X0C A;  2UVF A;  4XON A;  2NT6 A;  4I84 A;  4W8T A;  2QX3 A;  4MR0 A;  1DBO A;  1EE6 A;  4W8S A;  4XLA A;  4MXN A;  2NTP A;  2PYG A;  3GQ9 A;  3GQ8 A;  5AMV A;  1O8F A;  1OGM X;  1K5C A;  1NHC A;  2PEC A;  4XKV A;  4XL9 A;  1HG8 A;  2IQ7 A;  2VBK A;  2X3H A;  4Z05 A;  4XN3 A;  4OJL A;  4URR A;  4W8Q A;  4XNF A;  4YZX A;  4U4B A;  2NSP A;  3B8Y A;  3UW0 A;  3B90 A;  2X85 A;  3VST A;  1WMR A;  1CZF A;  1O8J A;  2NT9 A;  4XKW A;  3SUC A;  2O0V A;  4Z03 A;  2EWE A;  1OFM A;  4YZ0 A;  1OOC A;  1QJV A;  1RMG A;  5C1C A;  5C1E A;  4OZY A;  1KCC A;  1RWR A;  3GQ7 A;  4YZQ A;  3VMW A;  1QCX A;  4HWV A;  4XN0 A;  3VSV A;  1OGO X;  3T9G A;  4Z06 A;  2VJI A;  3EQN A;  1O8L A;  1IA5 A;  4YEJ A;  1JTA A;  4PMH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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