3KRGA

Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
pubmed doi rcsb
molecule tags Lyase
source organism Bacillus subtilis
molecule keywords Pectate lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2009-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3krgA00
4YEJA 3VMVA 3GQ7A 4Z06A 4XLFA 3T9GA 5C1EA 4MR0A 4OJPA 2VBEA 1O8DA 1OGMX 1OFLA 2NTPA 4XOTA 4MXNA 1O8HA 4EW9A 2UVFA 4PMHA 2QX3A 1DBGA 4XONA 1KCCA 3SUCA 4YZXA 2PYGA 3ZPPA 4YZQA 4OJLA 1CZFA 1QJVA 1DBOA 4XR6A 1K5CA 1HG8A 4W8SA 2Z8GA 4XM3A 1AIRA 2X85A 3LMWA 4XKWA 1QCXA 4AVZA 3GQ9A 3JURA 1RMGA 2QXZA 1RWRA 3FY3A 2NZMA 2O04A 1VBLA 4I84A 4Z05A 5C1CA 4C2LA 1PXZA 4HWVA 4XMYA 2O0WA 3EQNA 2NT6A 4OZYA 3GQ8A 3EQOA 4XN0A 4W8QA 4YZAA 4U49A 1JRGA 2NSPA 4XN3A 3VMWA 2X6WA 1O8JA 4Z03A 2INUA 1KCDA 2PECA 1IDJA 1IB4A 1OGOX 1EE6A 2NT9A 2INVA 1BN8A 4YELA 3WWGA 1OFMA 4XL9A 1XG2A 3UW0A 2VBKA 1WMRA 1OOCA 2BSPA 4XQFA 2O1DA 4XLEA 4XORA 2ODLA 4XLAA 2UVEA 1O8EA 1IA5A 4URRA 1PE9A 4W8RA 2O17A 1IDKA 2X3HA 1O8IA 3GQAA 2O0VA 5AMVA 3VSVA 4OJOA 4XOPA 2X6XA 1JTAA 1O8LA 1RU4A 1NHCA 2QY1A 4NK8A 4YZ0A 2VJIA 4XLHA 1H80A 3VSUA 4W8TA 2X6YA 3VSTA 3B8YA 4OJ5A 2NTQA 3ZSCA 2NTBA 1O8GA 2NSTA 2PYHA 4XKVA 1O8KA 4NK6A 2EWEA 1BHEA 3B4NA 1O8FA 2VBMA 3GRHA 4OZZA 1O88A 3KRGA 1KTWA 4XLCA 1O8MA 1X0CA 1GQ8A 2VJJA 4XNFA 1PLUA 4OJ6A 3B90A 4U4BA 2IQ7A
chains in the Genus database with same CATH superfamily
2XT2A 4YEJA 3GQ7A 3VMVA 4Z06A 3JX8A 4XLFA 3T9GA 5C1EA 1EZGA 4MR0A 4OJPA 2VBEA 1O8DA 1OGMX 1OFLA 2NTPA 3PETA 4XOTA 4MXNA 1HF2A 1O8HA 4EW9A 2UVFA 4PMHA 2QX3A 1DBGA 4XONA 1KCCA 3SUCA 1TYVA 2PYGA 4YZXA 4YZQA 3ZPPA 1QA1A 4KH3A 4OJLA 1CZFA 1QJVA 1DBOA 4XR6A 1K5CA 1HG8A 4W8SA 2Z8GA 4XM3A 1AIRA 2BM7A 2X85A 2XT4A 3LMWA 4XKWA 1QCXA 4AVZA 3GQ9A 2QYUA 3JURA 1RMGA 1LM1A 1RWRA 2O6WA 1K8FA 2QXZA 3FY3A 2NZMA 2O04A 1VBLA 2W7ZA 4I84A 2B0RA 4Z05A 5C1CA 4C2LA 1PXZA 4HWVA 1TSPA 2O0WA 4XMYA 3EQNA 2NT6A 2BM4A 4OZYA 1DABA 3GQ8A 2BX6A 3SZEA 3ML3A 3EQOA 4YDTA 4XN0A 3LJYA 4W8QA 3RIQA 4YZAA 4U49A 1TYWA 1JRGA 2NSPA 4XN3A 3VMWA 3PSZA 2X6WA 5DNSA 1O8JA 4Z03A 2INUA 5JMCB 1KCDA 2PECA 4YFOA 1IDJA 1TYUA 4OM9A 1IB4A 1OGOX 1EE6A 2NT9A 2INVA 3DU1X 1BN8A 4YELA 3SY2A 3NAWA 2IOUG 2J8IA 3WWGA 1OFMA 4XL9A 1XG2A 3UW0A 1TYXA 2VBKA 2F3LA 1WMRA 1QA3A 4YC5A 2VFOA 3SQVA 1OOCA 2BSPA 2G0YA 2O1DA 2VFPA 4XLEA 1LLZA 4XQFA 4XORA 2ODLA 2V5IA 1QQ1A 3NB2A 2VFQA 4V02C 4XLAA 3AK5A 2UVEA 1O8EA 1QRCA 1IA5A 4URRA 1PE9A 4W8RA 2BM5A 1OFEA 1IDKA 2O17A 1O8IA 2BM6A 2O0VA 2VFNA 2X3HA 3GQAA 5AMVA 3VSVA 4OJOA 4XOPA 1QRBA 2X6XA 1JTAA 1O8LA 4YCQA 1RU4A 3SYJA 4JRAC 1LLWA 1NHCA 2QY1A 2XTXA 4NK8A 1QA2A 4YZ0A 2VJIA 4XLHA 1H80A 3LYCA 2YUHA 3VSUA 4W8TA 5JLVC 1KQ5A 2X6YA 3VSTA 1K4ZA 3B8YA 3N90A 2VFMA 4OJ5A 3BH7B 4OPWA 2XC1A 2NTQA 3ZSCA 2NTBA 1O8GA 4YEIA 1L1IA 1CLWA 2NSTA 2PYHA 1OFDA 2XTWA 2QZAA 1O8KA 4XKVA 4NK6A 2EWEA 1BHEA 3B4NA 1O8FA 3TH0A 2VBMA 3GRHA 3N6ZA 3H09A 1O88A 4OZZA 3KRGA 1EA0A 2J8KA 1KTWA 3P4GA 4XLCA 1O8MA 2XTYA 1X0CA 1GQ8A 2VJJA 3PSSA 1PLUA 3BH6B 4OJ6A 3B90A 4U4BA 4XNFA 1WXRA 2IQ7A
chains in the Genus database with same CATH topology
4YEJA 3VMVA 3GQ7A 4Z06A 4XLFA 3T9GA 5C1EA 4MR0A 4OJPA 2VBEA 1O8DA 1OGMX 1OFLA 2NTPA 4XOTA 4MXNA 1O8HA 4EW9A 2UVFA 4PMHA 2QX3A 1DBGA 4XONA 1KCCA 3SUCA 4YZXA 2PYGA 3ZPPA 4YZQA 4OJLA 1CZFA 1QJVA 1DBOA 4XR6A 1K5CA 1HG8A 4W8SA 2Z8GA 4XM3A 1AIRA 2X85A 3LMWA 4XKWA 1QCXA 4AVZA 3GQ9A 3JURA 1RMGA 2QXZA 1RWRA 3FY3A 2NZMA 2O04A 1VBLA 4I84A 4Z05A 5C1CA 4C2LA 1PXZA 4HWVA 4XMYA 2O0WA 3EQNA 2NT6A 4OZYA 3GQ8A 3EQOA 4XN0A 4W8QA 4YZAA 4U49A 1JRGA 2NSPA 4XN3A 3VMWA 2X6WA 1O8JA 4Z03A 2INUA 1KCDA 2PECA 1IDJA 1IB4A 1OGOX 1EE6A 2NT9A 2INVA 1BN8A 4YELA 3WWGA 1OFMA 4XL9A 1XG2A 3UW0A 2VBKA 1WMRA 1OOCA 2BSPA 4XQFA 2O1DA 4XLEA 4XORA 2ODLA 4XLAA 2UVEA 1O8EA 1IA5A 4URRA 1PE9A 4W8RA 2O17A 1IDKA 2X3HA 1O8IA 3GQAA 2O0VA 5AMVA 3VSVA 4OJOA 4XOPA 2X6XA 1JTAA 1O8LA 1RU4A 1NHCA 2QY1A 4NK8A 4YZ0A 2VJIA 4XLHA 1H80A 3VSUA 4W8TA 2X6YA 3VSTA 3B8YA 4OJ5A 2NTQA 3ZSCA 2NTBA 1O8GA 2NSTA 2PYHA 4XKVA 1O8KA 4NK6A 2EWEA 1BHEA 3B4NA 1O8FA 2VBMA 3GRHA 4OZZA 1O88A 3KRGA 1KTWA 4XLCA 1O8MA 1X0CA 1GQ8A 2VJJA 4XNFA 1PLUA 4OJ6A 3B90A 4U4BA 2IQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YEJ A;  3VMV A;  3GQ7 A;  4Z06 A;  4XLF A;  3T9G A;  5C1E A;  4MR0 A;  4OJP A;  2VBE A;  1O8D A;  1OGM X;  1OFL A;  2NTP A;  4XOT A;  4MXN A;  1O8H A;  4EW9 A;  2UVF A;  4PMH A;  2QX3 A;  1DBG A;  4XON A;  1KCC A;  3SUC A;  4YZX A;  2PYG A;  3ZPP A;  4YZQ A;  4OJL A;  1CZF A;  1QJV A;  1DBO A;  4XR6 A;  1K5C A;  1HG8 A;  4W8S A;  2Z8G A;  4XM3 A;  1AIR A;  2X85 A;  3LMW A;  4XKW A;  1QCX A;  4AVZ A;  3GQ9 A;  3JUR A;  1RMG A;  2QXZ A;  1RWR A;  3FY3 A;  2NZM A;  2O04 A;  1VBL A;  4I84 A;  4Z05 A;  5C1C A;  4C2L A;  1PXZ A;  4HWV A;  4XMY A;  2O0W A;  3EQN A;  2NT6 A;  4OZY A;  3GQ8 A;  3EQO A;  4XN0 A;  4W8Q A;  4YZA A;  4U49 A;  1JRG A;  2NSP A;  4XN3 A;  3VMW A;  2X6W A;  1O8J A;  4Z03 A;  2INU A;  1KCD A;  2PEC A;  1IDJ A;  1IB4 A;  1OGO X;  1EE6 A;  2NT9 A;  2INV A;  1BN8 A;  4YEL A;  3WWG A;  1OFM A;  4XL9 A;  1XG2 A;  3UW0 A;  2VBK A;  1WMR A;  1OOC A;  2BSP A;  4XQF A;  2O1D A;  4XLE A;  4XOR A;  2ODL A;  4XLA A;  2UVE A;  1O8E A;  1IA5 A;  4URR A;  1PE9 A;  4W8R A;  2O17 A;  1IDK A;  2X3H A;  1O8I A;  3GQA A;  2O0V A;  5AMV A;  3VSV A;  4OJO A;  4XOP A;  2X6X A;  1JTA A;  1O8L A;  1RU4 A;  1NHC A;  2QY1 A;  4NK8 A;  4YZ0 A;  2VJI A;  4XLH A;  1H80 A;  3VSU A;  4W8T A;  2X6Y A;  3VST A;  3B8Y A;  4OJ5 A;  2NTQ A;  3ZSC A;  2NTB A;  1O8G A;  2NST A;  2PYH A;  4XKV A;  1O8K A;  4NK6 A;  2EWE A;  1BHE A;  3B4N A;  1O8F A;  2VBM A;  3GRH A;  4OZZ A;  1O88 A;  3KRG A;  1KTW A;  4XLC A;  1O8M A;  1X0C A;  1GQ8 A;  2VJJ A;  4XNF A;  1PLU A;  4OJ6 A;  3B90 A;  4U4B A;  2IQ7 A; 
#chains in the Genus database with same CATH topology
 2XT2 A;  4YEJ A;  3GQ7 A;  3VMV A;  4Z06 A;  3JX8 A;  4XLF A;  3T9G A;  5C1E A;  1EZG A;  4MR0 A;  4OJP A;  2VBE A;  1O8D A;  1OGM X;  1OFL A;  2NTP A;  3PET A;  4XOT A;  4MXN A;  1HF2 A;  1O8H A;  4EW9 A;  2UVF A;  4PMH A;  2QX3 A;  1DBG A;  4XON A;  1KCC A;  3SUC A;  1TYV A;  2PYG A;  4YZX A;  4YZQ A;  3ZPP A;  1QA1 A;  4KH3 A;  4OJL A;  1CZF A;  1QJV A;  1DBO A;  4XR6 A;  1K5C A;  1HG8 A;  4W8S A;  2Z8G A;  4XM3 A;  1AIR A;  2BM7 A;  2X85 A;  2XT4 A;  3LMW A;  4XKW A;  1QCX A;  4AVZ A;  3GQ9 A;  2QYU A;  3JUR A;  1RMG A;  1LM1 A;  1RWR A;  2O6W A;  1K8F A;  2QXZ A;  3FY3 A;  2NZM A;  2O04 A;  1VBL A;  2W7Z A;  4I84 A;  2B0R A;  4Z05 A;  5C1C A;  4C2L A;  1PXZ A;  4HWV A;  1TSP A;  2O0W A;  4XMY A;  3EQN A;  2NT6 A;  2BM4 A;  4OZY A;  1DAB A;  3GQ8 A;  2BX6 A;  3SZE A;  3ML3 A;  3EQO A;  4YDT A;  4XN0 A;  3LJY A;  4W8Q A;  3RIQ A;  4YZA A;  4U49 A;  1TYW A;  1JRG A;  2NSP A;  4XN3 A;  3VMW A;  3PSZ A;  2X6W A;  5DNS A;  1O8J A;  4Z03 A;  2INU A;  5JMC B;  1KCD A;  2PEC A;  4YFO A;  1IDJ A;  1TYU A;  4OM9 A;  1IB4 A;  1OGO X;  1EE6 A;  2NT9 A;  2INV A;  3DU1 X;  1BN8 A;  4YEL A;  3SY2 A;  3NAW A;  2IOU G;  2J8I A;  3WWG A;  1OFM A;  4XL9 A;  1XG2 A;  3UW0 A;  1TYX A;  2VBK A;  2F3L A;  1WMR A;  1QA3 A;  4YC5 A;  2VFO A;  3SQV A;  1OOC A;  2BSP A;  2G0Y A;  2O1D A;  2VFP A;  4XLE A;  1LLZ A;  4XQF A;  4XOR A;  2ODL A;  2V5I A;  1QQ1 A;  3NB2 A;  2VFQ A;  4V02 C;  4XLA A;  3AK5 A;  2UVE A;  1O8E A;  1QRC A;  1IA5 A;  4URR A;  1PE9 A;  4W8R A;  2BM5 A;  1OFE A;  1IDK A;  2O17 A;  1O8I A;  2BM6 A;  2O0V A;  2VFN A;  2X3H A;  3GQA A;  5AMV A;  3VSV A;  4OJO A;  4XOP A;  1QRB A;  2X6X A;  1JTA A;  1O8L A;  4YCQ A;  1RU4 A;  3SYJ A;  4JRA C;  1LLW A;  1NHC A;  2QY1 A;  2XTX A;  4NK8 A;  1QA2 A;  4YZ0 A;  2VJI A;  4XLH A;  1H80 A;  3LYC A;  2YUH A;  3VSU A;  4W8T A;  5JLV C;  1KQ5 A;  2X6Y A;  3VST A;  1K4Z A;  3B8Y A;  3N90 A;  2VFM A;  4OJ5 A;  3BH7 B;  4OPW A;  2XC1 A;  2NTQ A;  3ZSC A;  2NTB A;  1O8G A;  4YEI A;  1L1I A;  1CLW A;  2NST A;  2PYH A;  1OFD A;  2XTW A;  2QZA A;  1O8K A;  4XKV A;  4NK6 A;  2EWE A;  1BHE A;  3B4N A;  1O8F A;  3TH0 A;  2VBM A;  3GRH A;  3N6Z A;  3H09 A;  1O88 A;  4OZZ A;  3KRG A;  1EA0 A;  2J8K A;  1KTW A;  3P4G A;  4XLC A;  1O8M A;  2XTY A;  1X0C A;  1GQ8 A;  2VJJ A;  3PSS A;  1PLU A;  3BH6 B;  4OJ6 A;  3B90 A;  4U4B A;  4XNF A;  1WXR A;  2IQ7 A; 
#chains in the Genus database with same CATH homology
 4YEJ A;  3VMV A;  3GQ7 A;  4Z06 A;  4XLF A;  3T9G A;  5C1E A;  4MR0 A;  4OJP A;  2VBE A;  1O8D A;  1OGM X;  1OFL A;  2NTP A;  4XOT A;  4MXN A;  1O8H A;  4EW9 A;  2UVF A;  4PMH A;  2QX3 A;  1DBG A;  4XON A;  1KCC A;  3SUC A;  4YZX A;  2PYG A;  3ZPP A;  4YZQ A;  4OJL A;  1CZF A;  1QJV A;  1DBO A;  4XR6 A;  1K5C A;  1HG8 A;  4W8S A;  2Z8G A;  4XM3 A;  1AIR A;  2X85 A;  3LMW A;  4XKW A;  1QCX A;  4AVZ A;  3GQ9 A;  3JUR A;  1RMG A;  2QXZ A;  1RWR A;  3FY3 A;  2NZM A;  2O04 A;  1VBL A;  4I84 A;  4Z05 A;  5C1C A;  4C2L A;  1PXZ A;  4HWV A;  4XMY A;  2O0W A;  3EQN A;  2NT6 A;  4OZY A;  3GQ8 A;  3EQO A;  4XN0 A;  4W8Q A;  4YZA A;  4U49 A;  1JRG A;  2NSP A;  4XN3 A;  3VMW A;  2X6W A;  1O8J A;  4Z03 A;  2INU A;  1KCD A;  2PEC A;  1IDJ A;  1IB4 A;  1OGO X;  1EE6 A;  2NT9 A;  2INV A;  1BN8 A;  4YEL A;  3WWG A;  1OFM A;  4XL9 A;  1XG2 A;  3UW0 A;  2VBK A;  1WMR A;  1OOC A;  2BSP A;  4XQF A;  2O1D A;  4XLE A;  4XOR A;  2ODL A;  4XLA A;  2UVE A;  1O8E A;  1IA5 A;  4URR A;  1PE9 A;  4W8R A;  2O17 A;  1IDK A;  2X3H A;  1O8I A;  3GQA A;  2O0V A;  5AMV A;  3VSV A;  4OJO A;  4XOP A;  2X6X A;  1JTA A;  1O8L A;  1RU4 A;  1NHC A;  2QY1 A;  4NK8 A;  4YZ0 A;  2VJI A;  4XLH A;  1H80 A;  3VSU A;  4W8T A;  2X6Y A;  3VST A;  3B8Y A;  4OJ5 A;  2NTQ A;  3ZSC A;  2NTB A;  1O8G A;  2NST A;  2PYH A;  4XKV A;  1O8K A;  4NK6 A;  2EWE A;  1BHE A;  3B4N A;  1O8F A;  2VBM A;  3GRH A;  4OZZ A;  1O88 A;  3KRG A;  1KTW A;  4XLC A;  1O8M A;  1X0C A;  1GQ8 A;  2VJJ A;  4XNF A;  1PLU A;  4OJ6 A;  3B90 A;  4U4B A;  2IQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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