3KRGA

Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2009-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3krgA00
2IQ7A 2NT9A 4OJLA 2NTBA 2UVFA 2VJJA 3VSUA 1O8DA 1O8JA 2NTQA 2X3HA 2O04A 4HWVA 1IB4A 1IDKA 2X85A 4OJ5A 1BHEA 2X6XA 4OJPA 1O8EA 3LMWA 2NZMA 1H80A 4YELA 3JURA 4YZQA 1KTWA 2INUA 2X6WA 1BN8A 1DBGA 4C2LA 4Z03A 1O8GA 1OOCA 3WWGA 2QXZA 4OZZA 4MR0A 2VJIA 4OJ6A 3EQOA 1HG8A 2PECA 1IDJA 4W8RA 2NSTA 4XQFA 4XORA 3GQ7A 1XG2A 3GQ9A 3FY3A 1VBLA 4U49A 4YZAA 5C1EA 3UW0A 1PXZA 2QX3A 1GQ8A 4XKVA 4PMHA 4XLCA 5AMVA 1NHCA 1RMGA 4OZYA 4URRA 3B4NA 3KRGA 4EW9A 1O8MA 5C1CA 1CZFA 2VBEA 1AIRA 1OFMA 1KCCA 2X6YA 4W8QA 1WMRA 2ODLA 2INVA 1OGOX 1O8KA 3GQAA 4AVZA 1O8HA 1RWRA 4NK8A 2EWEA 4XLEA 3VMVA 3EQNA 2VBMA 4I84A 4XKWA 2O17A 4XOPA 4MXNA 1O8LA 3VSVA 1X0CA 3GQ8A 1QJVA 1O88A 2PYGA 4U4BA 3T9GA 4NK6A 1O8IA 4XN0A 2NSPA 1OGMX 2O0VA 1IA5A 4OJOA 4Z05A 3VSTA 3SUCA 3ZPPA 4XONA 1PE9A 4YEJA 3B90A 3ZSCA 1K5CA 3B8YA 4YZXA 4XN3A 4XLFA 4XL9A 2BSPA 2NTPA 4W8SA 2VBKA 4Z06A 4XM3A 1RU4A 4XMYA 3VMWA 1QCXA 2UVEA 4XLHA 2QY1A 4W8TA 4XOTA 4YZ0A 1O8FA 1JTAA 2PYHA 1DBOA 1EE6A 3GRHA 4XLAA 4XR6A 1JRGA 4XNFA 2O1DA 1PLUA 2NT6A 2Z8GA 1KCDA 1OFLA 2O0WA
chains in the Genus database with same CATH superfamily
2IQ7A 2NT9A 1DABA 2B0RA 2BM7A 4OJLA 2QYUA 2NTBA 2UVFA 2VJJA 3DU1X 3VSUA 3SYJA 1QA1A 1O8DA 1O8JA 1OFEA 2NTQA 2X3HA 3PSZA 2O04A 4HWVA 1IB4A 1IDKA 2X85A 4OJ5A 1TYXA 1BHEA 2X6XA 2J8KA 2QZAA 1EA0A 4OJPA 1O8EA 3LMWA 2NZMA 1H80A 2IOUG 2BM4A 3PETA 5JLVC 4YELA 4V02C 3JURA 4YZQA 1KTWA 2INUA 1OFDA 3ML3A 2X6WA 1BN8A 2XT2A 1DBGA 4C2LA 4Z03A 1O8GA 5DNSA 1OOCA 1K4ZA 3WWGA 2QXZA 4OZZA 4MR0A 1HF2A 2VJIA 2O6WA 3NB2A 1KQ5A 3EQOA 1HG8A 4OJ6A 2BM5A 2PECA 2W7ZA 3BH7B 1IDJA 1LM1A 4W8RA 2NSTA 1LLZA 4OPWA 4YC5A 4YDTA 4XQFA 4XORA 3GQ7A 2VFQA 1XG2A 3GQ9A 3H09A 3FY3A 1VBLA 1KCCA 4U49A 1LLWA 4YZAA 5C1EA 3UW0A 1PXZA 1QA3A 1L1IA 2QX3A 2VFOA 1GQ8A 4XKVA 4PMHA 4JRAC 4XLCA 5AMVA 1NHCA 1RMGA 4OZYA 4URRA 3B4NA 3KRGA 4EW9A 1O8MA 5C1CA 1CZFA 2VBEA 1AIRA 1OFMA 2BX6A 2VFPA 2X6YA 1QRCA 5JMCB 4W8QA 1WMRA 2ODLA 2INVA 1TYUA 3N6ZA 2XTXA 1OGOX 1WXRA 4OM9A 1O8KA 3GQAA 4AVZA 1O8HA 2YUHA 4YFOA 1RWRA 3RIQA 3TH0A 4NK8A 4YEIA 2EWEA 2XTWA 4XLEA 1CLWA 1K8FA 3VMVA 3EQNA 2VBMA 4I84A 1QRBA 4XKWA 2O17A 4XOPA 3SY2A 4MXNA 1QA2A 1O8LA 1TYVA 1X0CA 3VSVA 2VFMA 3GQ8A 3LJYA 1QJVA 1O88A 2VFNA 2PYGA 4U4BA 3T9GA 3AK5A 4NK6A 1O8IA 2XC1A 4XN0A 4KH3A 2NSPA 1OGMX 2O0VA 1IA5A 4OJOA 4Z05A 3VSTA 3SQVA 3SUCA 3ZPPA 4XONA 2G0YA 1TSPA 1PE9A 2BM6A 2V5IA 3B90A 3BH6B 3NAWA 4YEJA 3ZSCA 3B8YA 4YZXA 1K5CA 4XN3A 4XLFA 4XL9A 1QQ1A 2BSPA 2NTPA 3N90A 2VBKA 4W8SA 4Z06A 3SZEA 2J8IA 4XM3A 1RU4A 4XMYA 3VMWA 1QCXA 1TYWA 2UVEA 4XLHA 3JX8A 2QY1A 4W8TA 4XOTA 4YZ0A 1O8FA 1JTAA 2PYHA 2XT4A 3LYCA 1DBOA 2XTYA 1EE6A 3GRHA 4XLAA 4XR6A 3PSSA 1JRGA 4XNFA 1PLUA 2O1DA 2F3LA 2NT6A 2Z8GA 1KCDA 1OFLA 4YCQA 1EZGA 3P4GA 2O0WA
chains in the Genus database with same CATH topology
2IQ7A 2NT9A 4OJLA 2NTBA 2UVFA 2VJJA 3VSUA 1O8DA 1O8JA 2NTQA 2X3HA 2O04A 4HWVA 1IB4A 1IDKA 2X85A 4OJ5A 1BHEA 2X6XA 4OJPA 1O8EA 3LMWA 2NZMA 1H80A 4YELA 3JURA 4YZQA 1KTWA 2INUA 2X6WA 1BN8A 1DBGA 4C2LA 4Z03A 1O8GA 1OOCA 3WWGA 2QXZA 4OZZA 4MR0A 2VJIA 4OJ6A 3EQOA 1HG8A 2PECA 1IDJA 4W8RA 2NSTA 4XQFA 4XORA 3GQ7A 1XG2A 3GQ9A 3FY3A 1VBLA 4U49A 4YZAA 5C1EA 3UW0A 1PXZA 2QX3A 1GQ8A 4XKVA 4PMHA 4XLCA 5AMVA 1NHCA 1RMGA 4OZYA 4URRA 3B4NA 3KRGA 4EW9A 1O8MA 5C1CA 1CZFA 2VBEA 1AIRA 1OFMA 1KCCA 2X6YA 4W8QA 1WMRA 2ODLA 2INVA 1OGOX 1O8KA 3GQAA 4AVZA 1O8HA 1RWRA 4NK8A 2EWEA 4XLEA 3VMVA 3EQNA 2VBMA 4I84A 4XKWA 2O17A 4XOPA 4MXNA 1O8LA 3VSVA 1X0CA 3GQ8A 1QJVA 1O88A 2PYGA 4U4BA 3T9GA 4NK6A 1O8IA 4XN0A 2NSPA 1OGMX 2O0VA 1IA5A 4OJOA 4Z05A 3VSTA 3SUCA 3ZPPA 4XONA 1PE9A 4YEJA 3B90A 3ZSCA 1K5CA 3B8YA 4YZXA 4XN3A 4XLFA 4XL9A 2BSPA 2NTPA 4W8SA 2VBKA 4Z06A 4XM3A 1RU4A 4XMYA 3VMWA 1QCXA 2UVEA 4XLHA 2QY1A 4W8TA 4XOTA 4YZ0A 1O8FA 1JTAA 2PYHA 1DBOA 1EE6A 3GRHA 4XLAA 4XR6A 1JRGA 4XNFA 2O1DA 1PLUA 2NT6A 2Z8GA 1KCDA 1OFLA 2O0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IQ7 A;  2NT9 A;  4OJL A;  2NTB A;  2UVF A;  2VJJ A;  3VSU A;  1O8D A;  1O8J A;  2NTQ A;  2X3H A;  2O04 A;  4HWV A;  1IB4 A;  1IDK A;  2X85 A;  4OJ5 A;  1BHE A;  2X6X A;  4OJP A;  1O8E A;  3LMW A;  2NZM A;  1H80 A;  4YEL A;  3JUR A;  4YZQ A;  1KTW A;  2INU A;  2X6W A;  1BN8 A;  1DBG A;  4C2L A;  4Z03 A;  1O8G A;  1OOC A;  3WWG A;  2QXZ A;  4OZZ A;  4MR0 A;  2VJI A;  4OJ6 A;  3EQO A;  1HG8 A;  2PEC A;  1IDJ A;  4W8R A;  2NST A;  4XQF A;  4XOR A;  3GQ7 A;  1XG2 A;  3GQ9 A;  3FY3 A;  1VBL A;  4U49 A;  4YZA A;  5C1E A;  3UW0 A;  1PXZ A;  2QX3 A;  1GQ8 A;  4XKV A;  4PMH A;  4XLC A;  5AMV A;  1NHC A;  1RMG A;  4OZY A;  4URR A;  3B4N A;  3KRG A;  4EW9 A;  1O8M A;  5C1C A;  1CZF A;  2VBE A;  1AIR A;  1OFM A;  1KCC A;  2X6Y A;  4W8Q A;  1WMR A;  2ODL A;  2INV A;  1OGO X;  1O8K A;  3GQA A;  4AVZ A;  1O8H A;  1RWR A;  4NK8 A;  2EWE A;  4XLE A;  3VMV A;  3EQN A;  2VBM A;  4I84 A;  4XKW A;  2O17 A;  4XOP A;  4MXN A;  1O8L A;  3VSV A;  1X0C A;  3GQ8 A;  1QJV A;  1O88 A;  2PYG A;  4U4B A;  3T9G A;  4NK6 A;  1O8I A;  4XN0 A;  2NSP A;  1OGM X;  2O0V A;  1IA5 A;  4OJO A;  4Z05 A;  3VST A;  3SUC A;  3ZPP A;  4XON A;  1PE9 A;  4YEJ A;  3B90 A;  3ZSC A;  1K5C A;  3B8Y A;  4YZX A;  4XN3 A;  4XLF A;  4XL9 A;  2BSP A;  2NTP A;  4W8S A;  2VBK A;  4Z06 A;  4XM3 A;  1RU4 A;  4XMY A;  3VMW A;  1QCX A;  2UVE A;  4XLH A;  2QY1 A;  4W8T A;  4XOT A;  4YZ0 A;  1O8F A;  1JTA A;  2PYH A;  1DBO A;  1EE6 A;  3GRH A;  4XLA A;  4XR6 A;  1JRG A;  4XNF A;  2O1D A;  1PLU A;  2NT6 A;  2Z8G A;  1KCD A;  1OFL A;  2O0W A; 
#chains in the Genus database with same CATH topology
 2IQ7 A;  2NT9 A;  1DAB A;  2B0R A;  2BM7 A;  4OJL A;  2QYU A;  2NTB A;  2UVF A;  2VJJ A;  3DU1 X;  3VSU A;  3SYJ A;  1QA1 A;  1O8D A;  1O8J A;  1OFE A;  2NTQ A;  2X3H A;  3PSZ A;  2O04 A;  4HWV A;  1IB4 A;  1IDK A;  2X85 A;  4OJ5 A;  1TYX A;  1BHE A;  2X6X A;  2J8K A;  2QZA A;  1EA0 A;  4OJP A;  1O8E A;  3LMW A;  2NZM A;  1H80 A;  2IOU G;  2BM4 A;  3PET A;  5JLV C;  4YEL A;  4V02 C;  3JUR A;  4YZQ A;  1KTW A;  2INU A;  1OFD A;  3ML3 A;  2X6W A;  1BN8 A;  2XT2 A;  1DBG A;  4C2L A;  4Z03 A;  1O8G A;  5DNS A;  1OOC A;  1K4Z A;  3WWG A;  2QXZ A;  4OZZ A;  4MR0 A;  1HF2 A;  2VJI A;  2O6W A;  3NB2 A;  1KQ5 A;  3EQO A;  1HG8 A;  4OJ6 A;  2BM5 A;  2PEC A;  2W7Z A;  3BH7 B;  1IDJ A;  1LM1 A;  4W8R A;  2NST A;  1LLZ A;  4OPW A;  4YC5 A;  4YDT A;  4XQF A;  4XOR A;  3GQ7 A;  2VFQ A;  1XG2 A;  3GQ9 A;  3H09 A;  3FY3 A;  1VBL A;  1KCC A;  4U49 A;  1LLW A;  4YZA A;  5C1E A;  3UW0 A;  1PXZ A;  1QA3 A;  1L1I A;  2QX3 A;  2VFO A;  1GQ8 A;  4XKV A;  4PMH A;  4JRA C;  4XLC A;  5AMV A;  1NHC A;  1RMG A;  4OZY A;  4URR A;  3B4N A;  3KRG A;  4EW9 A;  1O8M A;  5C1C A;  1CZF A;  2VBE A;  1AIR A;  1OFM A;  2BX6 A;  2VFP A;  2X6Y A;  1QRC A;  5JMC B;  4W8Q A;  1WMR A;  2ODL A;  2INV A;  1TYU A;  3N6Z A;  2XTX A;  1OGO X;  1WXR A;  4OM9 A;  1O8K A;  3GQA A;  4AVZ A;  1O8H A;  2YUH A;  4YFO A;  1RWR A;  3RIQ A;  3TH0 A;  4NK8 A;  4YEI A;  2EWE A;  2XTW A;  4XLE A;  1CLW A;  1K8F A;  3VMV A;  3EQN A;  2VBM A;  4I84 A;  1QRB A;  4XKW A;  2O17 A;  4XOP A;  3SY2 A;  4MXN A;  1QA2 A;  1O8L A;  1TYV A;  1X0C A;  3VSV A;  2VFM A;  3GQ8 A;  3LJY A;  1QJV A;  1O88 A;  2VFN A;  2PYG A;  4U4B A;  3T9G A;  3AK5 A;  4NK6 A;  1O8I A;  2XC1 A;  4XN0 A;  4KH3 A;  2NSP A;  1OGM X;  2O0V A;  1IA5 A;  4OJO A;  4Z05 A;  3VST A;  3SQV A;  3SUC A;  3ZPP A;  4XON A;  2G0Y A;  1TSP A;  1PE9 A;  2BM6 A;  2V5I A;  3B90 A;  3BH6 B;  3NAW A;  4YEJ A;  3ZSC A;  3B8Y A;  4YZX A;  1K5C A;  4XN3 A;  4XLF A;  4XL9 A;  1QQ1 A;  2BSP A;  2NTP A;  3N90 A;  2VBK A;  4W8S A;  4Z06 A;  3SZE A;  2J8I A;  4XM3 A;  1RU4 A;  4XMY A;  3VMW A;  1QCX A;  1TYW A;  2UVE A;  4XLH A;  3JX8 A;  2QY1 A;  4W8T A;  4XOT A;  4YZ0 A;  1O8F A;  1JTA A;  2PYH A;  2XT4 A;  3LYC A;  1DBO A;  2XTY A;  1EE6 A;  3GRH A;  4XLA A;  4XR6 A;  3PSS A;  1JRG A;  4XNF A;  1PLU A;  2O1D A;  2F3L A;  2NT6 A;  2Z8G A;  1KCD A;  1OFL A;  4YCQ A;  1EZG A;  3P4G A;  2O0W A; 
#chains in the Genus database with same CATH homology
 2IQ7 A;  2NT9 A;  4OJL A;  2NTB A;  2UVF A;  2VJJ A;  3VSU A;  1O8D A;  1O8J A;  2NTQ A;  2X3H A;  2O04 A;  4HWV A;  1IB4 A;  1IDK A;  2X85 A;  4OJ5 A;  1BHE A;  2X6X A;  4OJP A;  1O8E A;  3LMW A;  2NZM A;  1H80 A;  4YEL A;  3JUR A;  4YZQ A;  1KTW A;  2INU A;  2X6W A;  1BN8 A;  1DBG A;  4C2L A;  4Z03 A;  1O8G A;  1OOC A;  3WWG A;  2QXZ A;  4OZZ A;  4MR0 A;  2VJI A;  4OJ6 A;  3EQO A;  1HG8 A;  2PEC A;  1IDJ A;  4W8R A;  2NST A;  4XQF A;  4XOR A;  3GQ7 A;  1XG2 A;  3GQ9 A;  3FY3 A;  1VBL A;  4U49 A;  4YZA A;  5C1E A;  3UW0 A;  1PXZ A;  2QX3 A;  1GQ8 A;  4XKV A;  4PMH A;  4XLC A;  5AMV A;  1NHC A;  1RMG A;  4OZY A;  4URR A;  3B4N A;  3KRG A;  4EW9 A;  1O8M A;  5C1C A;  1CZF A;  2VBE A;  1AIR A;  1OFM A;  1KCC A;  2X6Y A;  4W8Q A;  1WMR A;  2ODL A;  2INV A;  1OGO X;  1O8K A;  3GQA A;  4AVZ A;  1O8H A;  1RWR A;  4NK8 A;  2EWE A;  4XLE A;  3VMV A;  3EQN A;  2VBM A;  4I84 A;  4XKW A;  2O17 A;  4XOP A;  4MXN A;  1O8L A;  3VSV A;  1X0C A;  3GQ8 A;  1QJV A;  1O88 A;  2PYG A;  4U4B A;  3T9G A;  4NK6 A;  1O8I A;  4XN0 A;  2NSP A;  1OGM X;  2O0V A;  1IA5 A;  4OJO A;  4Z05 A;  3VST A;  3SUC A;  3ZPP A;  4XON A;  1PE9 A;  4YEJ A;  3B90 A;  3ZSC A;  1K5C A;  3B8Y A;  4YZX A;  4XN3 A;  4XLF A;  4XL9 A;  2BSP A;  2NTP A;  4W8S A;  2VBK A;  4Z06 A;  4XM3 A;  1RU4 A;  4XMY A;  3VMW A;  1QCX A;  2UVE A;  4XLH A;  2QY1 A;  4W8T A;  4XOT A;  4YZ0 A;  1O8F A;  1JTA A;  2PYH A;  1DBO A;  1EE6 A;  3GRH A;  4XLA A;  4XR6 A;  1JRG A;  4XNF A;  2O1D A;  1PLU A;  2NT6 A;  2Z8G A;  1KCD A;  1OFL A;  2O0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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