3KRGA

Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2009-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3krgA00
1O8KA 3VSTA 2QY1A 2X85A 1PE9A 4NK6A 2PYGA 2O17A 4NK8A 3VSUA 1O8LA 2IQ7A 3GQ9A 1WMRA 4XQFA 2O1DA 1IDJA 2INVA 4XLCA 4U49A 4YZXA 4C2LA 1OOCA 4XLHA 4AVZA 1O8IA 2Z8GA 1OFMA 4YZ0A 1PLUA 4U4BA 1DBOA 2X6XA 1EE6A 4W8TA 2ODLA 4YZQA 4HWVA 3VMWA 2UVFA 3GRHA 4XLEA 1VBLA 1IB4A 1O8DA 4MR0A 1AIRA 4XLFA 1OGOX 2NZMA 2NSTA 2O0VA 4XN3A 3B8YA 1JTAA 4XL9A 1OGMX 1OFLA 2O0WA 3EQOA 3B90A 3KRGA 4Z03A 4W8QA 1BN8A 2VJIA 4OZYA 3T9GA 4XR6A 2PECA 2QX3A 1NHCA 1O8JA 2BSPA 4YEJA 1JRGA 4YELA 1X0CA 2EWEA 1GQ8A 1QJVA 4XKVA 4XN0A 1O8EA 4XNFA 3GQ7A 1XG2A 4OJPA 3WWGA 1QCXA 2NT9A 1IA5A 1O8HA 2UVEA 3EQNA 4URRA 2NTPA 2VBKA 3LMWA 4OJOA 1HG8A 3B4NA 4OJLA 2NTBA 1IDKA 4XM3A 3JURA 1KCCA 2INUA 3GQ8A 3ZSCA 1PXZA 3VSVA 4PMHA 1RU4A 3VMVA 4XORA 5C1EA 4OJ6A 4W8RA 4EW9A 2PYHA 4YZAA 5AMVA 4OZZA 1K5CA 3UW0A 1RMGA 1O88A 2VBEA 1DBGA 2X6YA 1O8GA 2X6WA 4XOTA 4XMYA 4W8SA 1RWRA 2NT6A 2O04A 4MXNA 4OJ5A 4XKWA 2VJJA 2VBMA 2NTQA 1O8MA 3GQAA 4I84A 2QXZA 4Z06A 1CZFA 1KTWA 1O8FA 3FY3A 2NSPA 2X3HA 1KCDA 1BHEA 1H80A 5C1CA 4Z05A 4XLAA 4XONA 3SUCA 3ZPPA 4XOPA
chains in the Genus database with same CATH superfamily
1O8KA 1TYUA 3VSTA 1EZGA 2QY1A 2XT2A 2X85A 1PE9A 4NK6A 2PYGA 2O17A 4NK8A 3VSUA 2VFPA 1O8LA 2IQ7A 3GQ9A 1WMRA 4XQFA 1OFDA 1QA2A 2O1DA 3ML3A 1IDJA 1K4ZA 2INVA 4XLCA 4U49A 4YZXA 1QA1A 4C2LA 4YFOA 2BM5A 1TYXA 1OOCA 4XLHA 4AVZA 1O8IA 2VFQA 2Z8GA 1OFMA 4YZ0A 1PLUA 2XT4A 3PETA 3PSSA 1QA3A 4U4BA 1DBOA 1HF2A 2X6XA 1EE6A 1TYWA 4W8TA 2ODLA 4YZQA 4HWVA 3VMWA 2UVFA 3GRHA 2V5IA 1VBLA 4XLEA 1DABA 1IB4A 1O8DA 4MR0A 1AIRA 4XLFA 1OGOX 2XTWA 2NZMA 2NSTA 2O0VA 4OPWA 4XN3A 4YEIA 3LYCA 3B8YA 1JTAA 1EA0A 4XL9A 1OGMX 1L1IA 1WXRA 1OFLA 2O0WA 3EQOA 3B90A 3DU1X 3KRGA 2J8KA 4V02C 4W8QA 3NB2A 4Z03A 3SYJA 1BN8A 3SZEA 2VJIA 4OZYA 3T9GA 4XR6A 2PECA 2QX3A 1NHCA 2BX6A 2QYUA 1O8JA 2BSPA 4YEJA 1JRGA 4YELA 1X0CA 2EWEA 2XTXA 1GQ8A 1QJVA 1LM1A 4XKVA 4XN0A 1O8EA 4XNFA 3GQ7A 1KQ5A 1XG2A 4OJPA 3WWGA 3SY2A 1QCXA 2NT9A 2O6WA 1IA5A 1O8HA 2UVEA 2VFOA 2F3LA 3EQNA 3TH0A 2BM4A 4URRA 2NTPA 2VBKA 2BM7A 3LMWA 4OJOA 1CLWA 1HG8A 3B4NA 4OJLA 5JMCB 2VFMA 2NTBA 1IDKA 4XM3A 3JURA 1KCCA 2INUA 3GQ8A 3ZSCA 3H09A 1PXZA 4YDTA 4PMHA 3VSVA 1QRBA 1RU4A 4YC5A 3AK5A 3VMVA 4XORA 1TYVA 5C1EA 4OJ6A 4W8RA 4EW9A 2PYHA 4YZAA 4YCQA 5AMVA 2XTYA 4OZZA 1K5CA 3NAWA 3UW0A 4OM9A 1RMGA 3N6ZA 1O88A 1DBGA 2VBEA 2X6YA 1O8GA 2X6WA 4XOTA 2IOUG 3RIQA 1LLZA 3SQVA 3LJYA 2VFNA 4W8SA 2YUHA 4XMYA 1RWRA 2W7ZA 4KH3A 2NT6A 2O04A 4MXNA 3N90A 1LLWA 4OJ5A 2QZAA 3P4GA 4XKWA 2VJJA 1OFEA 2NTQA 2VBMA 1O8MA 3GQAA 4I84A 3JX8A 1QRCA 2QXZA 4JRAC 1TSPA 4Z06A 1CZFA 1QQ1A 3BH7B 3BH6B 1KTWA 1O8FA 2J8IA 2NSPA 2X3HA 3FY3A 1KCDA 5JLVC 3PSZA 1K8FA 5DNSA 1BHEA 2B0RA 2BM6A 1H80A 5C1CA 2XC1A 4Z05A 2G0YA 4XLAA 4XONA 3SUCA 3ZPPA 4XOPA
chains in the Genus database with same CATH topology
1O8KA 3VSTA 2QY1A 2X85A 1PE9A 4NK6A 2PYGA 2O17A 4NK8A 3VSUA 1O8LA 2IQ7A 3GQ9A 1WMRA 4XQFA 2O1DA 1IDJA 2INVA 4XLCA 4U49A 4YZXA 4C2LA 1OOCA 4XLHA 4AVZA 1O8IA 2Z8GA 1OFMA 4YZ0A 1PLUA 4U4BA 1DBOA 2X6XA 1EE6A 4W8TA 2ODLA 4YZQA 4HWVA 3VMWA 2UVFA 3GRHA 4XLEA 1VBLA 1IB4A 1O8DA 4MR0A 1AIRA 4XLFA 1OGOX 2NZMA 2NSTA 2O0VA 4XN3A 3B8YA 1JTAA 4XL9A 1OGMX 1OFLA 2O0WA 3EQOA 3B90A 3KRGA 4Z03A 4W8QA 1BN8A 2VJIA 4OZYA 3T9GA 4XR6A 2PECA 2QX3A 1NHCA 1O8JA 2BSPA 4YEJA 1JRGA 4YELA 1X0CA 2EWEA 1GQ8A 1QJVA 4XKVA 4XN0A 1O8EA 4XNFA 3GQ7A 1XG2A 4OJPA 3WWGA 1QCXA 2NT9A 1IA5A 1O8HA 2UVEA 3EQNA 4URRA 2NTPA 2VBKA 3LMWA 4OJOA 1HG8A 3B4NA 4OJLA 2NTBA 1IDKA 4XM3A 3JURA 1KCCA 2INUA 3GQ8A 3ZSCA 1PXZA 3VSVA 4PMHA 1RU4A 3VMVA 4XORA 5C1EA 4OJ6A 4W8RA 4EW9A 2PYHA 4YZAA 5AMVA 4OZZA 1K5CA 3UW0A 1RMGA 1O88A 2VBEA 1DBGA 2X6YA 1O8GA 2X6WA 4XOTA 4XMYA 4W8SA 1RWRA 2NT6A 2O04A 4MXNA 4OJ5A 4XKWA 2VJJA 2VBMA 2NTQA 1O8MA 3GQAA 4I84A 2QXZA 4Z06A 1CZFA 1KTWA 1O8FA 3FY3A 2NSPA 2X3HA 1KCDA 1BHEA 1H80A 5C1CA 4Z05A 4XLAA 4XONA 3SUCA 3ZPPA 4XOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8K A;  3VST A;  2QY1 A;  2X85 A;  1PE9 A;  4NK6 A;  2PYG A;  2O17 A;  4NK8 A;  3VSU A;  1O8L A;  2IQ7 A;  3GQ9 A;  1WMR A;  4XQF A;  2O1D A;  1IDJ A;  2INV A;  4XLC A;  4U49 A;  4YZX A;  4C2L A;  1OOC A;  4XLH A;  4AVZ A;  1O8I A;  2Z8G A;  1OFM A;  4YZ0 A;  1PLU A;  4U4B A;  1DBO A;  2X6X A;  1EE6 A;  4W8T A;  2ODL A;  4YZQ A;  4HWV A;  3VMW A;  2UVF A;  3GRH A;  4XLE A;  1VBL A;  1IB4 A;  1O8D A;  4MR0 A;  1AIR A;  4XLF A;  1OGO X;  2NZM A;  2NST A;  2O0V A;  4XN3 A;  3B8Y A;  1JTA A;  4XL9 A;  1OGM X;  1OFL A;  2O0W A;  3EQO A;  3B90 A;  3KRG A;  4Z03 A;  4W8Q A;  1BN8 A;  2VJI A;  4OZY A;  3T9G A;  4XR6 A;  2PEC A;  2QX3 A;  1NHC A;  1O8J A;  2BSP A;  4YEJ A;  1JRG A;  4YEL A;  1X0C A;  2EWE A;  1GQ8 A;  1QJV A;  4XKV A;  4XN0 A;  1O8E A;  4XNF A;  3GQ7 A;  1XG2 A;  4OJP A;  3WWG A;  1QCX A;  2NT9 A;  1IA5 A;  1O8H A;  2UVE A;  3EQN A;  4URR A;  2NTP A;  2VBK A;  3LMW A;  4OJO A;  1HG8 A;  3B4N A;  4OJL A;  2NTB A;  1IDK A;  4XM3 A;  3JUR A;  1KCC A;  2INU A;  3GQ8 A;  3ZSC A;  1PXZ A;  3VSV A;  4PMH A;  1RU4 A;  3VMV A;  4XOR A;  5C1E A;  4OJ6 A;  4W8R A;  4EW9 A;  2PYH A;  4YZA A;  5AMV A;  4OZZ A;  1K5C A;  3UW0 A;  1RMG A;  1O88 A;  2VBE A;  1DBG A;  2X6Y A;  1O8G A;  2X6W A;  4XOT A;  4XMY A;  4W8S A;  1RWR A;  2NT6 A;  2O04 A;  4MXN A;  4OJ5 A;  4XKW A;  2VJJ A;  2VBM A;  2NTQ A;  1O8M A;  3GQA A;  4I84 A;  2QXZ A;  4Z06 A;  1CZF A;  1KTW A;  1O8F A;  3FY3 A;  2NSP A;  2X3H A;  1KCD A;  1BHE A;  1H80 A;  5C1C A;  4Z05 A;  4XLA A;  4XON A;  3SUC A;  3ZPP A;  4XOP A; 
#chains in the Genus database with same CATH topology
 1O8K A;  1TYU A;  3VST A;  1EZG A;  2QY1 A;  2XT2 A;  2X85 A;  1PE9 A;  4NK6 A;  2PYG A;  2O17 A;  4NK8 A;  3VSU A;  2VFP A;  1O8L A;  2IQ7 A;  3GQ9 A;  1WMR A;  4XQF A;  1OFD A;  1QA2 A;  2O1D A;  3ML3 A;  1IDJ A;  1K4Z A;  2INV A;  4XLC A;  4U49 A;  4YZX A;  1QA1 A;  4C2L A;  4YFO A;  2BM5 A;  1TYX A;  1OOC A;  4XLH A;  4AVZ A;  1O8I A;  2VFQ A;  2Z8G A;  1OFM A;  4YZ0 A;  1PLU A;  2XT4 A;  3PET A;  3PSS A;  1QA3 A;  4U4B A;  1DBO A;  1HF2 A;  2X6X A;  1EE6 A;  1TYW A;  4W8T A;  2ODL A;  4YZQ A;  4HWV A;  3VMW A;  2UVF A;  3GRH A;  2V5I A;  1VBL A;  4XLE A;  1DAB A;  1IB4 A;  1O8D A;  4MR0 A;  1AIR A;  4XLF A;  1OGO X;  2XTW A;  2NZM A;  2NST A;  2O0V A;  4OPW A;  4XN3 A;  4YEI A;  3LYC A;  3B8Y A;  1JTA A;  1EA0 A;  4XL9 A;  1OGM X;  1L1I A;  1WXR A;  1OFL A;  2O0W A;  3EQO A;  3B90 A;  3DU1 X;  3KRG A;  2J8K A;  4V02 C;  4W8Q A;  3NB2 A;  4Z03 A;  3SYJ A;  1BN8 A;  3SZE A;  2VJI A;  4OZY A;  3T9G A;  4XR6 A;  2PEC A;  2QX3 A;  1NHC A;  2BX6 A;  2QYU A;  1O8J A;  2BSP A;  4YEJ A;  1JRG A;  4YEL A;  1X0C A;  2EWE A;  2XTX A;  1GQ8 A;  1QJV A;  1LM1 A;  4XKV A;  4XN0 A;  1O8E A;  4XNF A;  3GQ7 A;  1KQ5 A;  1XG2 A;  4OJP A;  3WWG A;  3SY2 A;  1QCX A;  2NT9 A;  2O6W A;  1IA5 A;  1O8H A;  2UVE A;  2VFO A;  2F3L A;  3EQN A;  3TH0 A;  2BM4 A;  4URR A;  2NTP A;  2VBK A;  2BM7 A;  3LMW A;  4OJO A;  1CLW A;  1HG8 A;  3B4N A;  4OJL A;  5JMC B;  2VFM A;  2NTB A;  1IDK A;  4XM3 A;  3JUR A;  1KCC A;  2INU A;  3GQ8 A;  3ZSC A;  3H09 A;  1PXZ A;  4YDT A;  4PMH A;  3VSV A;  1QRB A;  1RU4 A;  4YC5 A;  3AK5 A;  3VMV A;  4XOR A;  1TYV A;  5C1E A;  4OJ6 A;  4W8R A;  4EW9 A;  2PYH A;  4YZA A;  4YCQ A;  5AMV A;  2XTY A;  4OZZ A;  1K5C A;  3NAW A;  3UW0 A;  4OM9 A;  1RMG A;  3N6Z A;  1O88 A;  1DBG A;  2VBE A;  2X6Y A;  1O8G A;  2X6W A;  4XOT A;  2IOU G;  3RIQ A;  1LLZ A;  3SQV A;  3LJY A;  2VFN A;  4W8S A;  2YUH A;  4XMY A;  1RWR A;  2W7Z A;  4KH3 A;  2NT6 A;  2O04 A;  4MXN A;  3N90 A;  1LLW A;  4OJ5 A;  2QZA A;  3P4G A;  4XKW A;  2VJJ A;  1OFE A;  2NTQ A;  2VBM A;  1O8M A;  3GQA A;  4I84 A;  3JX8 A;  1QRC A;  2QXZ A;  4JRA C;  1TSP A;  4Z06 A;  1CZF A;  1QQ1 A;  3BH7 B;  3BH6 B;  1KTW A;  1O8F A;  2J8I A;  2NSP A;  2X3H A;  3FY3 A;  1KCD A;  5JLV C;  3PSZ A;  1K8F A;  5DNS A;  1BHE A;  2B0R A;  2BM6 A;  1H80 A;  5C1C A;  2XC1 A;  4Z05 A;  2G0Y A;  4XLA A;  4XON A;  3SUC A;  3ZPP A;  4XOP A; 
#chains in the Genus database with same CATH homology
 1O8K A;  3VST A;  2QY1 A;  2X85 A;  1PE9 A;  4NK6 A;  2PYG A;  2O17 A;  4NK8 A;  3VSU A;  1O8L A;  2IQ7 A;  3GQ9 A;  1WMR A;  4XQF A;  2O1D A;  1IDJ A;  2INV A;  4XLC A;  4U49 A;  4YZX A;  4C2L A;  1OOC A;  4XLH A;  4AVZ A;  1O8I A;  2Z8G A;  1OFM A;  4YZ0 A;  1PLU A;  4U4B A;  1DBO A;  2X6X A;  1EE6 A;  4W8T A;  2ODL A;  4YZQ A;  4HWV A;  3VMW A;  2UVF A;  3GRH A;  4XLE A;  1VBL A;  1IB4 A;  1O8D A;  4MR0 A;  1AIR A;  4XLF A;  1OGO X;  2NZM A;  2NST A;  2O0V A;  4XN3 A;  3B8Y A;  1JTA A;  4XL9 A;  1OGM X;  1OFL A;  2O0W A;  3EQO A;  3B90 A;  3KRG A;  4Z03 A;  4W8Q A;  1BN8 A;  2VJI A;  4OZY A;  3T9G A;  4XR6 A;  2PEC A;  2QX3 A;  1NHC A;  1O8J A;  2BSP A;  4YEJ A;  1JRG A;  4YEL A;  1X0C A;  2EWE A;  1GQ8 A;  1QJV A;  4XKV A;  4XN0 A;  1O8E A;  4XNF A;  3GQ7 A;  1XG2 A;  4OJP A;  3WWG A;  1QCX A;  2NT9 A;  1IA5 A;  1O8H A;  2UVE A;  3EQN A;  4URR A;  2NTP A;  2VBK A;  3LMW A;  4OJO A;  1HG8 A;  3B4N A;  4OJL A;  2NTB A;  1IDK A;  4XM3 A;  3JUR A;  1KCC A;  2INU A;  3GQ8 A;  3ZSC A;  1PXZ A;  3VSV A;  4PMH A;  1RU4 A;  3VMV A;  4XOR A;  5C1E A;  4OJ6 A;  4W8R A;  4EW9 A;  2PYH A;  4YZA A;  5AMV A;  4OZZ A;  1K5C A;  3UW0 A;  1RMG A;  1O88 A;  2VBE A;  1DBG A;  2X6Y A;  1O8G A;  2X6W A;  4XOT A;  4XMY A;  4W8S A;  1RWR A;  2NT6 A;  2O04 A;  4MXN A;  4OJ5 A;  4XKW A;  2VJJ A;  2VBM A;  2NTQ A;  1O8M A;  3GQA A;  4I84 A;  2QXZ A;  4Z06 A;  1CZF A;  1KTW A;  1O8F A;  3FY3 A;  2NSP A;  2X3H A;  1KCD A;  1BHE A;  1H80 A;  5C1C A;  4Z05 A;  4XLA A;  4XON A;  3SUC A;  3ZPP A;  4XOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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