3KRGA

Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
pubmed doi rcsb
source organism Bacillus subtilis
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2009-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3krgA00
2O0WA 1O8EA 1PE9A 1PXZA 4HWVA 1OGOX 2X6YA 3B4NA 3KRGA 1K5CA 4XMYA 2O04A 4OJOA 1KTWA 2NT6A 3GQ8A 1CZFA 1O8DA 1RWRA 2VBEA 1IA5A 1XG2A 4PMHA 3SUCA 4OZZA 2QX3A 3EQOA 3VSUA 2Z8GA 4XOTA 1DBOA 1NHCA 2PYHA 3B8YA 2O17A 1O8KA 4YZAA 2NZMA 2ODLA 1JRGA 4YEJA 4YZ0A 2PYGA 2X3HA 5C1EA 3VMWA 2O1DA 1DBGA 1EE6A 1O8JA 4OJPA 1AIRA 1RU4A 3T9GA 2INUA 4XNFA 5C1CA 1WMRA 1O8MA 2EWEA 1O8LA 2X6WA 1OFLA 3B90A 3VSTA 4MR0A 2INVA 4NK6A 5AMVA 1RMGA 2O0VA 2UVFA 4XR6A 2NTBA 1IDKA 1H80A 1OGMX 4OJ6A 4URRA 3JURA 3VMVA 3WWGA 1KCCA 1IDJA 4W8QA 2BSPA 4XKVA 4EW9A 2NTQA 2PECA 3UW0A 1O8FA 1JTAA 4YELA 2QXZA 4Z05A 4OJ5A 4U4BA 2X6XA 4MXNA 3GQ9A 3GQAA 4XL9A 1X0CA 2X85A 2VBMA 4XLEA 4YZQA 1KCDA 1BN8A 1O8GA 2QY1A 1GQ8A 2VBKA 4XLFA 1O8IA 4C2LA 1OOCA 4YZXA 1VBLA 4OJLA 4Z03A 1OFMA 3VSVA 3LMWA 2IQ7A 4W8SA 2NTPA 4W8TA 4XLCA 2VJJA 1QCXA 4U49A 4XN0A 1BHEA 3ZPPA 3FY3A 2NSTA 3ZSCA 3EQNA 4XQFA 4XM3A 4AVZA 4XN3A 3GQ7A 1O8HA 3GRHA 4XORA 4OZYA 1IB4A 1QJVA 4I84A 4XONA 4Z06A 2NT9A 4XLAA 4XKWA 4W8RA 2UVEA 1HG8A 1O88A 2NSPA 4XLHA 2VJIA 4NK8A 4XOPA 1PLUA
chains in the Genus database with same CATH superfamily
2O0WA 1O8EA 1PE9A 1LLZA 1PXZA 4HWVA 1OGOX 2X6YA 3B4NA 3KRGA 1K5CA 4XMYA 1HF2A 2O04A 2XTYA 1KTWA 2NT6A 4OJOA 3GQ8A 2G0YA 1CZFA 1O8DA 1RWRA 5AMVA 2VBEA 2F3LA 1IA5A 2BM5A 1XG2A 3NAWA 4PMHA 3SUCA 1QQ1A 4OZZA 3RIQA 3PSZA 2QX3A 1QA3A 3EQOA 3VSUA 2Z8GA 4XOTA 4OM9A 1DBOA 2VFPA 1QA1A 1NHCA 1QRCA 2PYHA 3ML3A 3B8YA 2O17A 1O8KA 2J8KA 2BM4A 2QYUA 2VFNA 2VFOA 4YZAA 2NZMA 2ODLA 4YEIA 1JRGA 3DU1X 4YEJA 4YZ0A 2PYGA 2X3HA 5C1EA 4YC5A 3VMWA 2O1DA 1DBGA 2YUHA 1EE6A 1O8JA 3AK5A 4YFOA 3PETA 4OJPA 3SY2A 5JLVC 3LYCA 3JX8A 5DNSA 1AIRA 1RU4A 1OFDA 2INUA 4XNFA 3T9GA 1WMRA 1TYUA 3BH6B 5C1CA 1O8MA 2EWEA 1O8LA 2VFQA 2X6WA 1OFLA 2J8IA 3B90A 3H09A 3VSTA 4MR0A 1TSPA 2INVA 2VFMA 1RMGA 2B0RA 2O0VA 2UVFA 3N6ZA 4NK6A 4XR6A 2NTBA 1IDKA 1H80A 1OGMX 3PSSA 4OJ6A 4URRA 3JURA 3VMVA 3WWGA 3TH0A 1KCCA 1IDJA 4W8QA 2BSPA 4XKVA 3P4GA 4EW9A 2NTQA 2PECA 1DABA 4JRAC 1LM1A 3UW0A 1O8FA 1JTAA 4OPWA 2QXZA 4YELA 4Z05A 4OJ5A 4U4BA 2X6XA 4MXNA 3GQ9A 2BX6A 3GQAA 3SQVA 4XL9A 1X0CA 1CLWA 2VBMA 2X85A 4XLEA 4YZQA 3LJYA 1QA2A 4KH3A 1KCDA 1BN8A 3NB2A 1O8GA 1EA0A 2QY1A 1GQ8A 1TYVA 2O6WA 2VBKA 3N90A 4XLFA 1O8IA 4C2LA 1OOCA 2V5IA 4YZXA 2IOUG 1VBLA 4OJLA 4Z03A 1OFMA 3VSVA 2BM6A 3SZEA 3LMWA 2IQ7A 4W8SA 1K8FA 2NTPA 4W8TA 4XLCA 2VJJA 2QZAA 2W7ZA 1QCXA 1K4ZA 4U49A 4XN0A 1BHEA 3ZPPA 1TYXA 3FY3A 2NSTA 3ZSCA 3EQNA 4XQFA 4XM3A 4AVZA 4YDTA 4XN3A 1QRBA 1O8HA 3GRHA 3GQ7A 2XC1A 4OZYA 1QJVA 4XORA 1IB4A 1TYWA 4YCQA 1WXRA 4I84A 1OFEA 2XT2A 5JMCB 2BM7A 2XT4A 4V02C 4XONA 4Z06A 1LLWA 2NT9A 1EZGA 1KQ5A 2XTWA 4XLAA 3BH7B 4XKWA 4W8RA 2UVEA 1HG8A 1O88A 2NSPA 2XTXA 2VJIA 4NK8A 4XLHA 1L1IA 4XOPA 3SYJA 1PLUA
chains in the Genus database with same CATH topology
2O0WA 1O8EA 1PE9A 1PXZA 4HWVA 1OGOX 2X6YA 3B4NA 3KRGA 1K5CA 4XMYA 2O04A 4OJOA 1KTWA 2NT6A 3GQ8A 1CZFA 1O8DA 1RWRA 2VBEA 1IA5A 1XG2A 4PMHA 3SUCA 4OZZA 2QX3A 3EQOA 3VSUA 2Z8GA 4XOTA 1DBOA 1NHCA 2PYHA 3B8YA 2O17A 1O8KA 4YZAA 2NZMA 2ODLA 1JRGA 4YEJA 4YZ0A 2PYGA 2X3HA 5C1EA 3VMWA 2O1DA 1DBGA 1EE6A 1O8JA 4OJPA 1AIRA 1RU4A 3T9GA 2INUA 4XNFA 5C1CA 1WMRA 1O8MA 2EWEA 1O8LA 2X6WA 1OFLA 3B90A 3VSTA 4MR0A 2INVA 4NK6A 5AMVA 1RMGA 2O0VA 2UVFA 4XR6A 2NTBA 1IDKA 1H80A 1OGMX 4OJ6A 4URRA 3JURA 3VMVA 3WWGA 1KCCA 1IDJA 4W8QA 2BSPA 4XKVA 4EW9A 2NTQA 2PECA 3UW0A 1O8FA 1JTAA 4YELA 2QXZA 4Z05A 4OJ5A 4U4BA 2X6XA 4MXNA 3GQ9A 3GQAA 4XL9A 1X0CA 2X85A 2VBMA 4XLEA 4YZQA 1KCDA 1BN8A 1O8GA 2QY1A 1GQ8A 2VBKA 4XLFA 1O8IA 4C2LA 1OOCA 4YZXA 1VBLA 4OJLA 4Z03A 1OFMA 3VSVA 3LMWA 2IQ7A 4W8SA 2NTPA 4W8TA 4XLCA 2VJJA 1QCXA 4U49A 4XN0A 1BHEA 3ZPPA 3FY3A 2NSTA 3ZSCA 3EQNA 4XQFA 4XM3A 4AVZA 4XN3A 3GQ7A 1O8HA 3GRHA 4XORA 4OZYA 1IB4A 1QJVA 4I84A 4XONA 4Z06A 2NT9A 4XLAA 4XKWA 4W8RA 2UVEA 1HG8A 1O88A 2NSPA 4XLHA 2VJIA 4NK8A 4XOPA 1PLUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O0W A;  1O8E A;  1PE9 A;  1PXZ A;  4HWV A;  1OGO X;  2X6Y A;  3B4N A;  3KRG A;  1K5C A;  4XMY A;  2O04 A;  4OJO A;  1KTW A;  2NT6 A;  3GQ8 A;  1CZF A;  1O8D A;  1RWR A;  2VBE A;  1IA5 A;  1XG2 A;  4PMH A;  3SUC A;  4OZZ A;  2QX3 A;  3EQO A;  3VSU A;  2Z8G A;  4XOT A;  1DBO A;  1NHC A;  2PYH A;  3B8Y A;  2O17 A;  1O8K A;  4YZA A;  2NZM A;  2ODL A;  1JRG A;  4YEJ A;  4YZ0 A;  2PYG A;  2X3H A;  5C1E A;  3VMW A;  2O1D A;  1DBG A;  1EE6 A;  1O8J A;  4OJP A;  1AIR A;  1RU4 A;  3T9G A;  2INU A;  4XNF A;  5C1C A;  1WMR A;  1O8M A;  2EWE A;  1O8L A;  2X6W A;  1OFL A;  3B90 A;  3VST A;  4MR0 A;  2INV A;  4NK6 A;  5AMV A;  1RMG A;  2O0V A;  2UVF A;  4XR6 A;  2NTB A;  1IDK A;  1H80 A;  1OGM X;  4OJ6 A;  4URR A;  3JUR A;  3VMV A;  3WWG A;  1KCC A;  1IDJ A;  4W8Q A;  2BSP A;  4XKV A;  4EW9 A;  2NTQ A;  2PEC A;  3UW0 A;  1O8F A;  1JTA A;  4YEL A;  2QXZ A;  4Z05 A;  4OJ5 A;  4U4B A;  2X6X A;  4MXN A;  3GQ9 A;  3GQA A;  4XL9 A;  1X0C A;  2X85 A;  2VBM A;  4XLE A;  4YZQ A;  1KCD A;  1BN8 A;  1O8G A;  2QY1 A;  1GQ8 A;  2VBK A;  4XLF A;  1O8I A;  4C2L A;  1OOC A;  4YZX A;  1VBL A;  4OJL A;  4Z03 A;  1OFM A;  3VSV A;  3LMW A;  2IQ7 A;  4W8S A;  2NTP A;  4W8T A;  4XLC A;  2VJJ A;  1QCX A;  4U49 A;  4XN0 A;  1BHE A;  3ZPP A;  3FY3 A;  2NST A;  3ZSC A;  3EQN A;  4XQF A;  4XM3 A;  4AVZ A;  4XN3 A;  3GQ7 A;  1O8H A;  3GRH A;  4XOR A;  4OZY A;  1IB4 A;  1QJV A;  4I84 A;  4XON A;  4Z06 A;  2NT9 A;  4XLA A;  4XKW A;  4W8R A;  2UVE A;  1HG8 A;  1O88 A;  2NSP A;  4XLH A;  2VJI A;  4NK8 A;  4XOP A;  1PLU A; 
#chains in the Genus database with same CATH topology
 2O0W A;  1O8E A;  1PE9 A;  1LLZ A;  1PXZ A;  4HWV A;  1OGO X;  2X6Y A;  3B4N A;  3KRG A;  1K5C A;  4XMY A;  1HF2 A;  2O04 A;  2XTY A;  1KTW A;  2NT6 A;  4OJO A;  3GQ8 A;  2G0Y A;  1CZF A;  1O8D A;  1RWR A;  5AMV A;  2VBE A;  2F3L A;  1IA5 A;  2BM5 A;  1XG2 A;  3NAW A;  4PMH A;  3SUC A;  1QQ1 A;  4OZZ A;  3RIQ A;  3PSZ A;  2QX3 A;  1QA3 A;  3EQO A;  3VSU A;  2Z8G A;  4XOT A;  4OM9 A;  1DBO A;  2VFP A;  1QA1 A;  1NHC A;  1QRC A;  2PYH A;  3ML3 A;  3B8Y A;  2O17 A;  1O8K A;  2J8K A;  2BM4 A;  2QYU A;  2VFN A;  2VFO A;  4YZA A;  2NZM A;  2ODL A;  4YEI A;  1JRG A;  3DU1 X;  4YEJ A;  4YZ0 A;  2PYG A;  2X3H A;  5C1E A;  4YC5 A;  3VMW A;  2O1D A;  1DBG A;  2YUH A;  1EE6 A;  1O8J A;  3AK5 A;  4YFO A;  3PET A;  4OJP A;  3SY2 A;  5JLV C;  3LYC A;  3JX8 A;  5DNS A;  1AIR A;  1RU4 A;  1OFD A;  2INU A;  4XNF A;  3T9G A;  1WMR A;  1TYU A;  3BH6 B;  5C1C A;  1O8M A;  2EWE A;  1O8L A;  2VFQ A;  2X6W A;  1OFL A;  2J8I A;  3B90 A;  3H09 A;  3VST A;  4MR0 A;  1TSP A;  2INV A;  2VFM A;  1RMG A;  2B0R A;  2O0V A;  2UVF A;  3N6Z A;  4NK6 A;  4XR6 A;  2NTB A;  1IDK A;  1H80 A;  1OGM X;  3PSS A;  4OJ6 A;  4URR A;  3JUR A;  3VMV A;  3WWG A;  3TH0 A;  1KCC A;  1IDJ A;  4W8Q A;  2BSP A;  4XKV A;  3P4G A;  4EW9 A;  2NTQ A;  2PEC A;  1DAB A;  4JRA C;  1LM1 A;  3UW0 A;  1O8F A;  1JTA A;  4OPW A;  2QXZ A;  4YEL A;  4Z05 A;  4OJ5 A;  4U4B A;  2X6X A;  4MXN A;  3GQ9 A;  2BX6 A;  3GQA A;  3SQV A;  4XL9 A;  1X0C A;  1CLW A;  2VBM A;  2X85 A;  4XLE A;  4YZQ A;  3LJY A;  1QA2 A;  4KH3 A;  1KCD A;  1BN8 A;  3NB2 A;  1O8G A;  1EA0 A;  2QY1 A;  1GQ8 A;  1TYV A;  2O6W A;  2VBK A;  3N90 A;  4XLF A;  1O8I A;  4C2L A;  1OOC A;  2V5I A;  4YZX A;  2IOU G;  1VBL A;  4OJL A;  4Z03 A;  1OFM A;  3VSV A;  2BM6 A;  3SZE A;  3LMW A;  2IQ7 A;  4W8S A;  1K8F A;  2NTP A;  4W8T A;  4XLC A;  2VJJ A;  2QZA A;  2W7Z A;  1QCX A;  1K4Z A;  4U49 A;  4XN0 A;  1BHE A;  3ZPP A;  1TYX A;  3FY3 A;  2NST A;  3ZSC A;  3EQN A;  4XQF A;  4XM3 A;  4AVZ A;  4YDT A;  4XN3 A;  1QRB A;  1O8H A;  3GRH A;  3GQ7 A;  2XC1 A;  4OZY A;  1QJV A;  4XOR A;  1IB4 A;  1TYW A;  4YCQ A;  1WXR A;  4I84 A;  1OFE A;  2XT2 A;  5JMC B;  2BM7 A;  2XT4 A;  4V02 C;  4XON A;  4Z06 A;  1LLW A;  2NT9 A;  1EZG A;  1KQ5 A;  2XTW A;  4XLA A;  3BH7 B;  4XKW A;  4W8R A;  2UVE A;  1HG8 A;  1O88 A;  2NSP A;  2XTX A;  2VJI A;  4NK8 A;  4XLH A;  1L1I A;  4XOP A;  3SYJ A;  1PLU A; 
#chains in the Genus database with same CATH homology
 2O0W A;  1O8E A;  1PE9 A;  1PXZ A;  4HWV A;  1OGO X;  2X6Y A;  3B4N A;  3KRG A;  1K5C A;  4XMY A;  2O04 A;  4OJO A;  1KTW A;  2NT6 A;  3GQ8 A;  1CZF A;  1O8D A;  1RWR A;  2VBE A;  1IA5 A;  1XG2 A;  4PMH A;  3SUC A;  4OZZ A;  2QX3 A;  3EQO A;  3VSU A;  2Z8G A;  4XOT A;  1DBO A;  1NHC A;  2PYH A;  3B8Y A;  2O17 A;  1O8K A;  4YZA A;  2NZM A;  2ODL A;  1JRG A;  4YEJ A;  4YZ0 A;  2PYG A;  2X3H A;  5C1E A;  3VMW A;  2O1D A;  1DBG A;  1EE6 A;  1O8J A;  4OJP A;  1AIR A;  1RU4 A;  3T9G A;  2INU A;  4XNF A;  5C1C A;  1WMR A;  1O8M A;  2EWE A;  1O8L A;  2X6W A;  1OFL A;  3B90 A;  3VST A;  4MR0 A;  2INV A;  4NK6 A;  5AMV A;  1RMG A;  2O0V A;  2UVF A;  4XR6 A;  2NTB A;  1IDK A;  1H80 A;  1OGM X;  4OJ6 A;  4URR A;  3JUR A;  3VMV A;  3WWG A;  1KCC A;  1IDJ A;  4W8Q A;  2BSP A;  4XKV A;  4EW9 A;  2NTQ A;  2PEC A;  3UW0 A;  1O8F A;  1JTA A;  4YEL A;  2QXZ A;  4Z05 A;  4OJ5 A;  4U4B A;  2X6X A;  4MXN A;  3GQ9 A;  3GQA A;  4XL9 A;  1X0C A;  2X85 A;  2VBM A;  4XLE A;  4YZQ A;  1KCD A;  1BN8 A;  1O8G A;  2QY1 A;  1GQ8 A;  2VBK A;  4XLF A;  1O8I A;  4C2L A;  1OOC A;  4YZX A;  1VBL A;  4OJL A;  4Z03 A;  1OFM A;  3VSV A;  3LMW A;  2IQ7 A;  4W8S A;  2NTP A;  4W8T A;  4XLC A;  2VJJ A;  1QCX A;  4U49 A;  4XN0 A;  1BHE A;  3ZPP A;  3FY3 A;  2NST A;  3ZSC A;  3EQN A;  4XQF A;  4XM3 A;  4AVZ A;  4XN3 A;  3GQ7 A;  1O8H A;  3GRH A;  4XOR A;  4OZY A;  1IB4 A;  1QJV A;  4I84 A;  4XON A;  4Z06 A;  2NT9 A;  4XLA A;  4XKW A;  4W8R A;  2UVE A;  1HG8 A;  1O88 A;  2NSP A;  4XLH A;  2VJI A;  4NK8 A;  4XOP A;  1PLU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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