1QQ1A

Tailspike protein, mutant e359g
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGGSGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
total genus 189
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qq1A00
1TSPA 1TYWA 1TYUA 1TYXA 1QA2A 4OM9A 1QA3A 1QA1A 1QRBA 2IOUG 3SZEA 1WXRA 4KH3A 3AK5A 3TH0A 2VFMA 3RIQA 2V5IA 1TYVA 1QRCA 3SYJA 1DABA 1CLWA 3ML3A 3H09A 2XC1A 2VFOA 2VFPA 2VFQA 2VFNA 1QQ1A
chains in the Genus database with same CATH superfamily
3GQ9A 4U49A 4U4BA 1TYWA 1OOCA 4XLAA 2VJIA 1TYUA 2XT4A 4OM9A 3VMWA 1PE9A 2G0YA 5DNSA 2INVA 1RMGA 1QRBA 1O8LA 2QX3A 2W7ZA 1O8IA 2XT2A 4OPWA 2NTBA 4MR0A 1OFDA 2IQ7A 4YZAA 1RWRA 1O8FA 1O8GA 1OFEA 1K5CA 4W8TA 1BHEA 1HF2A 2QZAA 2UVEA 2F3LA 4Z06A 3GQ8A 1OFLA 2NSPA 4OJPA 4XM3A 2XTXA 3SY2A 2V5IA 3UW0A 4XNFA 1JTAA 1O8HA 1OGMX 4XLCA 4YZ0A 3N90A 3NB2A 2NT9A 4W8SA 3VSTA 2NZMA 3VSVA 4YEIA 4YZQA 2VFQA 2XTWA 3B90A 4XOTA 2VBEA 1TSPA 2BSPA 3GRHA 1LLZA 3NAWA 4XR6A 4YFOA 1LM1A 1IB4A 3BH7B 1L1IA 4V02C 1QA1A 2VJJA 1HG8A 1GQ8A 2QY1A 4HWVA 1AIRA 3SZEA 4YELA 1WXRA 4XKWA 3JX8A 2Z8GA 4XLEA 1DBOA 5JMCB 4XN0A 4JRAC 3RIQA 1PLUA 1CZFA 1K8FA 1QJVA 3EQNA 4OJ5A 4XL9A 5AMVA 1EZGA 4XORA 1O8JA 2O1DA 2ODLA 2X6WA 1EE6A 3BH6B 3LMWA 1O8MA 3N6ZA 2J8KA 3B8YA 2QYUA 3ML3A 3H09A 4OJ6A 4XMYA 1KTWA 3ZPPA 2INUA 5C1CA 2BX6A 1QQ1A 3SQVA 3VSUA 2VBMA 1XG2A 1BN8A 1QA2A 1QA3A 1O88A 4NK8A 1H80A 2UVFA 1IDKA 5JLVC 1OGOX 3PSSA 1NHCA 2IOUG 1QCXA 2XTYA 3P4GA 4MXNA 4OZZA 4YCQA 4KH3A 3AK5A 1EA0A 1KCCA 4XLHA 4YEJA 3TH0A 4YZXA 3B4NA 2NTQA 2YUHA 1OFMA 2PYGA 3PSZA 1TYVA 1QRCA 1KQ5A 3LJYA 1DABA 1CLWA 4Z05A 1LLWA 2NSTA 2NT6A 2QXZA 3WWGA 1KCDA 4EW9A 4NK6A 4AVZA 4URRA 4PMHA 2VFNA 2O6WA 2VBKA 2X6XA 2X6YA 2BM7A 4I84A 1TYXA 4XKVA 3SUCA 4C2LA 4XQFA 3DU1X 1JRGA 3GQ7A 2X85A 2BM5A 4XN3A 1VBLA 2BM6A 1O8DA 4XOPA 4XLFA 4OZYA 3VMVA 4YC5A 2X3HA 3GQAA 1RU4A 4Z03A 1X0CA 4W8QA 3EQOA 2J8IA 3FY3A 4W8RA 2VFMA 3PETA 4XONA 1IA5A 3KRGA 1IDJA 2O04A 2BM4A 2O0VA 2B0RA 3JURA 3ZSCA 4OJLA 1PXZA 2NTPA 2EWEA 5C1EA 1DBGA 3SYJA 2PECA 2PYHA 3LYCA 1O8KA 2O17A 1K4ZA 4OJOA 2XC1A 4YDTA 2VFOA 2VFPA 1O8EA 3T9GA 2O0WA 1WMRA
chains in the Genus database with same CATH topology
1TSPA 1TYWA 1TYUA 2BM7A 1TYXA 3BH7B 1QA2A 4OM9A 4V02C 2G0YA 1QA3A 2BM5A 1QA1A 5JLVC 2BM6A 1QRBA 2W7ZA 2IOUG 4OPWA 3SZEA 3P4GA 1WXRA 3JX8A 4KH3A 3AK5A 2J8IA 1HF2A 5JMCB 3TH0A 2F3LA 2VFMA 3PETA 4JRAC 3RIQA 2YUHA 4OJPA 1K8FA 4OJ5A 2BM4A 2B0RA 2V5IA 4OJLA 1TYVA 1QRCA 3BH6B 1KQ5A 3LJYA 3SYJA 3N6ZA 3LYCA 1DABA 1CLWA 3N90A 3ML3A 1K4ZA 3H09A 4OJ6A 2XC1A 4OJOA 2VFOA 2VFPA 2VFQA 2BX6A 2VFNA 1QQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TSP A;  1TYW A;  1TYU A;  1TYX A;  1QA2 A;  4OM9 A;  1QA3 A;  1QA1 A;  1QRB A;  2IOU G;  3SZE A;  1WXR A;  4KH3 A;  3AK5 A;  3TH0 A;  2VFM A;  3RIQ A;  2V5I A;  1TYV A;  1QRC A;  3SYJ A;  1DAB A;  1CLW A;  3ML3 A;  3H09 A;  2XC1 A;  2VFO A;  2VFP A;  2VFQ A;  2VFN A;  1QQ1 A; 
#chains in the Genus database with same CATH topology
 3GQ9 A;  4U49 A;  4U4B A;  1TYW A;  1OOC A;  4XLA A;  2VJI A;  1TYU A;  2XT4 A;  4OM9 A;  3VMW A;  1PE9 A;  2G0Y A;  5DNS A;  2INV A;  1RMG A;  1QRB A;  1O8L A;  2QX3 A;  2W7Z A;  1O8I A;  2XT2 A;  4OPW A;  2NTB A;  4MR0 A;  1OFD A;  2IQ7 A;  4YZA A;  1RWR A;  1O8F A;  1O8G A;  1OFE A;  1K5C A;  4W8T A;  1BHE A;  1HF2 A;  2QZA A;  2UVE A;  2F3L A;  4Z06 A;  3GQ8 A;  1OFL A;  2NSP A;  4OJP A;  4XM3 A;  2XTX A;  3SY2 A;  2V5I A;  3UW0 A;  4XNF A;  1JTA A;  1O8H A;  1OGM X;  4XLC A;  4YZ0 A;  3N90 A;  3NB2 A;  2NT9 A;  4W8S A;  3VST A;  2NZM A;  3VSV A;  4YEI A;  4YZQ A;  2VFQ A;  2XTW A;  3B90 A;  4XOT A;  2VBE A;  1TSP A;  2BSP A;  3GRH A;  1LLZ A;  3NAW A;  4XR6 A;  4YFO A;  1LM1 A;  1IB4 A;  3BH7 B;  1L1I A;  4V02 C;  1QA1 A;  2VJJ A;  1HG8 A;  1GQ8 A;  2QY1 A;  4HWV A;  1AIR A;  3SZE A;  4YEL A;  1WXR A;  4XKW A;  3JX8 A;  2Z8G A;  4XLE A;  1DBO A;  5JMC B;  4XN0 A;  4JRA C;  3RIQ A;  1PLU A;  1CZF A;  1K8F A;  1QJV A;  3EQN A;  4OJ5 A;  4XL9 A;  5AMV A;  1EZG A;  4XOR A;  1O8J A;  2O1D A;  2ODL A;  2X6W A;  1EE6 A;  3BH6 B;  3LMW A;  1O8M A;  3N6Z A;  2J8K A;  3B8Y A;  2QYU A;  3ML3 A;  3H09 A;  4OJ6 A;  4XMY A;  1KTW A;  3ZPP A;  2INU A;  5C1C A;  2BX6 A;  1QQ1 A;  3SQV A;  3VSU A;  2VBM A;  1XG2 A;  1BN8 A;  1QA2 A;  1QA3 A;  1O88 A;  4NK8 A;  1H80 A;  2UVF A;  1IDK A;  5JLV C;  1OGO X;  3PSS A;  1NHC A;  2IOU G;  1QCX A;  2XTY A;  3P4G A;  4MXN A;  4OZZ A;  4YCQ A;  4KH3 A;  3AK5 A;  1EA0 A;  1KCC A;  4XLH A;  4YEJ A;  3TH0 A;  4YZX A;  3B4N A;  2NTQ A;  2YUH A;  1OFM A;  2PYG A;  3PSZ A;  1TYV A;  1QRC A;  1KQ5 A;  3LJY A;  1DAB A;  1CLW A;  4Z05 A;  1LLW A;  2NST A;  2NT6 A;  2QXZ A;  3WWG A;  1KCD A;  4EW9 A;  4NK6 A;  4AVZ A;  4URR A;  4PMH A;  2VFN A;  2O6W A;  2VBK A;  2X6X A;  2X6Y A;  2BM7 A;  4I84 A;  1TYX A;  4XKV A;  3SUC A;  4C2L A;  4XQF A;  3DU1 X;  1JRG A;  3GQ7 A;  2X85 A;  2BM5 A;  4XN3 A;  1VBL A;  2BM6 A;  1O8D A;  4XOP A;  4XLF A;  4OZY A;  3VMV A;  4YC5 A;  2X3H A;  3GQA A;  1RU4 A;  4Z03 A;  1X0C A;  4W8Q A;  3EQO A;  2J8I A;  3FY3 A;  4W8R A;  2VFM A;  3PET A;  4XON A;  1IA5 A;  3KRG A;  1IDJ A;  2O04 A;  2BM4 A;  2O0V A;  2B0R A;  3JUR A;  3ZSC A;  4OJL A;  1PXZ A;  2NTP A;  2EWE A;  5C1E A;  1DBG A;  3SYJ A;  2PEC A;  2PYH A;  3LYC A;  1O8K A;  2O17 A;  1K4Z A;  4OJO A;  2XC1 A;  4YDT A;  2VFO A;  2VFP A;  1O8E A;  3T9G A;  2O0W A;  1WMR A; 
#chains in the Genus database with same CATH homology
 1TSP A;  1TYW A;  1TYU A;  2BM7 A;  1TYX A;  3BH7 B;  1QA2 A;  4OM9 A;  4V02 C;  2G0Y A;  1QA3 A;  2BM5 A;  1QA1 A;  5JLV C;  2BM6 A;  1QRB A;  2W7Z A;  2IOU G;  4OPW A;  3SZE A;  3P4G A;  1WXR A;  3JX8 A;  4KH3 A;  3AK5 A;  2J8I A;  1HF2 A;  5JMC B;  3TH0 A;  2F3L A;  2VFM A;  3PET A;  4JRA C;  3RIQ A;  2YUH A;  4OJP A;  1K8F A;  4OJ5 A;  2BM4 A;  2B0R A;  2V5I A;  4OJL A;  1TYV A;  1QRC A;  3BH6 B;  1KQ5 A;  3LJY A;  3SYJ A;  3N6Z A;  3LYC A;  1DAB A;  1CLW A;  3N90 A;  3ML3 A;  1K4Z A;  3H09 A;  4OJ6 A;  2XC1 A;  4OJO A;  2VFO A;  2VFP A;  2VFQ A;  2BX6 A;  2VFN A;  1QQ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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