1QQ1A

Tailspike protein, mutant e359g
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGGSGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 189
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qq1A00
1QRCA 3SYJA 1TYVA 3AK5A 2VFNA 3H09A 1QA2A 2VFOA 4KH3A 1TYXA 2V5IA 1DABA 3ML3A 2XC1A 3TH0A 1TYUA 3SZEA 1QQ1A 1QRBA 3RIQA 1CLWA 2IOUG 1TYWA 2VFQA 1WXRA 2VFMA 1TSPA 1QA1A 1QA3A 4OM9A 2VFPA
chains in the Genus database with same CATH superfamily
4Z03A 2INUA 1O8IA 3BH6B 1WMRA 1JTAA 1TYVA 4XQFA 3B8YA 1O8LA 1LM1A 4U4BA 1O8HA 2QYUA 4XN0A 2XT4A 4XNFA 1X0CA 2ODLA 4KH3A 4PMHA 2PECA 3WWGA 2BM6A 2BM5A 1DBGA 2UVEA 5JLVC 4AVZA 4YDTA 3DU1X 4OJ5A 1DABA 4XLEA 1QQ1A 2O17A 2F3LA 2J8IA 4OJ6A 1QRBA 3RIQA 1CLWA 2INVA 4XLCA 4XLAA 4Z05A 2XT2A 4YELA 4XORA 1RMGA 5C1EA 2VFPA 4XKVA 3GQ7A 1AIRA 1LLWA 3SYJA 3VMWA 2IQ7A 2VBEA 1K4ZA 2NTPA 3JX8A 3NB2A 3BH7B 4MR0A 4W8RA 3P4GA 4XLFA 4EW9A 2BX6A 3H09A 4XMYA 3EQOA 3JURA 2BM4A 3PSSA 4YZXA 4HWVA 4XL9A 3VSUA 1OOCA 4XR6A 1TYXA 2XTXA 3B4NA 1HG8A 4XOPA 2NT6A 2PYHA 3B90A 3EQNA 4URRA 2X6XA 2NT9A 4OJOA 1TYUA 5AMVA 3ZSCA 2NSPA 4OJLA 1GQ8A 3LYCA 1L1IA 3T9GA 2IOUG 2EWEA 4XN3A 1WXRA 1DBOA 4JRAC 2NTQA 4I84A 4W8SA 1K8FA 2XTYA 1PLUA 3GQ8A 1O88A 4U49A 1QRCA 3KRGA 3PSZA 3NAWA 4XOTA 3ZPPA 1IDJA 2XTWA 5C1CA 1O8MA 1LLZA 3AK5A 2VFNA 3SQVA 2UVFA 1BN8A 2PYGA 4YCQA 4V02C 2Z8GA 3VSTA 4W8QA 2QX3A 1O8KA 1PXZA 2BSPA 1RU4A 3GQ9A 4YEJA 3VMVA 4W8TA 4NK8A 2O04A 4YC5A 2V5IA 2QZAA 3ML3A 1O8DA 2B0RA 3GRHA 1OGOX 2NSTA 3TH0A 4YEIA 2O0VA 2NTBA 4XLHA 4OJPA 1CZFA 3N6ZA 2VFQA 4YZAA 4Z06A 1O8GA 2NZMA 1O8EA 2O1DA 2VFMA 3PETA 4OZYA 1QA1A 2W7ZA 1OFEA 1EA0A 1OFMA 1OGMX 2X6WA 4C2LA 4XM3A 2O6WA 4YZ0A 1IB4A 2J8KA 1KCDA 4NK6A 3SUCA 2VBKA 3VSVA 1BHEA 1OFLA 2G0YA 2QY1A 2O0WA 1QCXA 1QA2A 2VFOA 2BM7A 1JRGA 5DNSA 1HF2A 3SY2A 2QXZA 4XKWA 5JMCB 2VJIA 4XONA 2VJJA 3FY3A 1H80A 1PE9A 1OFDA 4OPWA 4MXNA 3UW0A 4OZZA 2XC1A 4YZQA 1O8JA 1IA5A 3GQAA 3SZEA 1O8FA 1K5CA 3LJYA 2X85A 1XG2A 2YUHA 1VBLA 1IDKA 1KQ5A 1KTWA 1EE6A 1RWRA 1TYWA 4YFOA 1EZGA 1TSPA 3LMWA 3N90A 1KCCA 1QA3A 1QJVA 2VBMA 1NHCA 2X3HA 4OM9A 2X6YA
chains in the Genus database with same CATH topology
4OJ6A 1QRCA 3SYJA 3BH6B 3JX8A 1K4ZA 1TYVA 3BH7B 3AK5A 2VFNA 3P4GA 2BX6A 3H09A 2G0YA 2BM4A 4V02C 1QA2A 2VFOA 2BM7A 4KH3A 1HF2A 1TYXA 5JMCB 2BM6A 2BM5A 5JLVC 2V5IA 4OPWA 3SZEA 1DABA 3ML3A 4OJ5A 2XC1A 2B0RA 4OJOA 1TYUA 3TH0A 1QQ1A 3LJYA 2F3LA 2J8IA 3LYCA 2YUHA 1QRBA 4OJLA 4OJPA 1CLWA 3RIQA 2IOUG 1KQ5A 3N6ZA 1TYWA 2VFQA 1WXRA 2VFMA 3PETA 4JRAC 1TSPA 1QA1A 3N90A 1QA3A 1K8FA 2W7ZA 4OM9A 2VFPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRC A;  3SYJ A;  1TYV A;  3AK5 A;  2VFN A;  3H09 A;  1QA2 A;  2VFO A;  4KH3 A;  1TYX A;  2V5I A;  1DAB A;  3ML3 A;  2XC1 A;  3TH0 A;  1TYU A;  3SZE A;  1QQ1 A;  1QRB A;  3RIQ A;  1CLW A;  2IOU G;  1TYW A;  2VFQ A;  1WXR A;  2VFM A;  1TSP A;  1QA1 A;  1QA3 A;  4OM9 A;  2VFP A; 
#chains in the Genus database with same CATH topology
 4Z03 A;  2INU A;  1O8I A;  3BH6 B;  1WMR A;  1JTA A;  1TYV A;  4XQF A;  3B8Y A;  1O8L A;  1LM1 A;  4U4B A;  1O8H A;  2QYU A;  4XN0 A;  2XT4 A;  4XNF A;  1X0C A;  2ODL A;  4KH3 A;  4PMH A;  2PEC A;  3WWG A;  2BM6 A;  2BM5 A;  1DBG A;  2UVE A;  5JLV C;  4AVZ A;  4YDT A;  3DU1 X;  4OJ5 A;  1DAB A;  4XLE A;  1QQ1 A;  2O17 A;  2F3L A;  2J8I A;  4OJ6 A;  1QRB A;  3RIQ A;  1CLW A;  2INV A;  4XLC A;  4XLA A;  4Z05 A;  2XT2 A;  4YEL A;  4XOR A;  1RMG A;  5C1E A;  2VFP A;  4XKV A;  3GQ7 A;  1AIR A;  1LLW A;  3SYJ A;  3VMW A;  2IQ7 A;  2VBE A;  1K4Z A;  2NTP A;  3JX8 A;  3NB2 A;  3BH7 B;  4MR0 A;  4W8R A;  3P4G A;  4XLF A;  4EW9 A;  2BX6 A;  3H09 A;  4XMY A;  3EQO A;  3JUR A;  2BM4 A;  3PSS A;  4YZX A;  4HWV A;  4XL9 A;  3VSU A;  1OOC A;  4XR6 A;  1TYX A;  2XTX A;  3B4N A;  1HG8 A;  4XOP A;  2NT6 A;  2PYH A;  3B90 A;  3EQN A;  4URR A;  2X6X A;  2NT9 A;  4OJO A;  1TYU A;  5AMV A;  3ZSC A;  2NSP A;  4OJL A;  1GQ8 A;  3LYC A;  1L1I A;  3T9G A;  2IOU G;  2EWE A;  4XN3 A;  1WXR A;  1DBO A;  4JRA C;  2NTQ A;  4I84 A;  4W8S A;  1K8F A;  2XTY A;  1PLU A;  3GQ8 A;  1O88 A;  4U49 A;  1QRC A;  3KRG A;  3PSZ A;  3NAW A;  4XOT A;  3ZPP A;  1IDJ A;  2XTW A;  5C1C A;  1O8M A;  1LLZ A;  3AK5 A;  2VFN A;  3SQV A;  2UVF A;  1BN8 A;  2PYG A;  4YCQ A;  4V02 C;  2Z8G A;  3VST A;  4W8Q A;  2QX3 A;  1O8K A;  1PXZ A;  2BSP A;  1RU4 A;  3GQ9 A;  4YEJ A;  3VMV A;  4W8T A;  4NK8 A;  2O04 A;  4YC5 A;  2V5I A;  2QZA A;  3ML3 A;  1O8D A;  2B0R A;  3GRH A;  1OGO X;  2NST A;  3TH0 A;  4YEI A;  2O0V A;  2NTB A;  4XLH A;  4OJP A;  1CZF A;  3N6Z A;  2VFQ A;  4YZA A;  4Z06 A;  1O8G A;  2NZM A;  1O8E A;  2O1D A;  2VFM A;  3PET A;  4OZY A;  1QA1 A;  2W7Z A;  1OFE A;  1EA0 A;  1OFM A;  1OGM X;  2X6W A;  4C2L A;  4XM3 A;  2O6W A;  4YZ0 A;  1IB4 A;  2J8K A;  1KCD A;  4NK6 A;  3SUC A;  2VBK A;  3VSV A;  1BHE A;  1OFL A;  2G0Y A;  2QY1 A;  2O0W A;  1QCX A;  1QA2 A;  2VFO A;  2BM7 A;  1JRG A;  5DNS A;  1HF2 A;  3SY2 A;  2QXZ A;  4XKW A;  5JMC B;  2VJI A;  4XON A;  2VJJ A;  3FY3 A;  1H80 A;  1PE9 A;  1OFD A;  4OPW A;  4MXN A;  3UW0 A;  4OZZ A;  2XC1 A;  4YZQ A;  1O8J A;  1IA5 A;  3GQA A;  3SZE A;  1O8F A;  1K5C A;  3LJY A;  2X85 A;  1XG2 A;  2YUH A;  1VBL A;  1IDK A;  1KQ5 A;  1KTW A;  1EE6 A;  1RWR A;  1TYW A;  4YFO A;  1EZG A;  1TSP A;  3LMW A;  3N90 A;  1KCC A;  1QA3 A;  1QJV A;  2VBM A;  1NHC A;  2X3H A;  4OM9 A;  2X6Y A; 
#chains in the Genus database with same CATH homology
 4OJ6 A;  1QRC A;  3SYJ A;  3BH6 B;  3JX8 A;  1K4Z A;  1TYV A;  3BH7 B;  3AK5 A;  2VFN A;  3P4G A;  2BX6 A;  3H09 A;  2G0Y A;  2BM4 A;  4V02 C;  1QA2 A;  2VFO A;  2BM7 A;  4KH3 A;  1HF2 A;  1TYX A;  5JMC B;  2BM6 A;  2BM5 A;  5JLV C;  2V5I A;  4OPW A;  3SZE A;  1DAB A;  3ML3 A;  4OJ5 A;  2XC1 A;  2B0R A;  4OJO A;  1TYU A;  3TH0 A;  1QQ1 A;  3LJY A;  2F3L A;  2J8I A;  3LYC A;  2YUH A;  1QRB A;  4OJL A;  4OJP A;  1CLW A;  3RIQ A;  2IOU G;  1KQ5 A;  3N6Z A;  1TYW A;  2VFQ A;  1WXR A;  2VFM A;  3PET A;  4JRA C;  1TSP A;  1QA1 A;  3N90 A;  1QA3 A;  1K8F A;  2W7Z A;  4OM9 A;  2VFP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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