1QQ1A

Tailspike protein, mutant e359g
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGGSGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
total genus 189
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qq1A00
2VFOA 4OM9A 3SZEA 1TSPA 1WXRA 4KH3A 2VFQA 1TYVA 3TH0A 1QQ1A 3H09A 2XC1A 3RIQA 1QRBA 2VFNA 3ML3A 1QRCA 1TYXA 1TYWA 1QA1A 1QA2A 2V5IA 1CLWA 2IOUG 1TYUA 3SYJA 1DABA 3AK5A 1QA3A 2VFPA 2VFMA
chains in the Genus database with same CATH superfamily
1PE9A 1QCXA 1EZGA 3N6ZA 4PMHA 1OFLA 1IDJA 1AIRA 1O8HA 1RMGA 2O0WA 3GQ9A 4Z05A 2XT4A 2O1DA 4MR0A 4XLEA 3SZEA 3VSVA 3VSUA 2O0VA 3ZSCA 3GQ8A 2B0RA 5C1CA 3FY3A 4KH3A 1HG8A 4XMYA 4YELA 3PSSA 4XN0A 1VBLA 1IA5A 4I84A 3SUCA 2XC1A 4XKWA 4OJ6A 1WMRA 2PYHA 3JURA 1QRCA 3EQOA 4OPWA 2BM6A 4W8QA 4XR6A 4EW9A 1QA1A 1OFDA 2XTYA 2IOUG 3P4GA 2VBKA 4Z03A 1BN8A 2INVA 4XKVA 3T9GA 2X6XA 4W8SA 3AK5A 4XONA 2X6YA 4YDTA 2INUA 2UVEA 2VJJA 3N90A 2NT6A 1O8MA 2VFMA 4XLAA 3ZPPA 3LJYA 1L1IA 1IB4A 2W7ZA 1O8IA 3LMWA 1GQ8A 2NSTA 3NB2A 1X0CA 1LM1A 2VFOA 2XT2A 4XOPA 1OFMA 1TSPA 1K8FA 2ODLA 3GQAA 2NSPA 2BX6A 1H80A 1EA0A 1QQ1A 1KCCA 1OFEA 4XN3A 4XNFA 2F3LA 4XORA 1KTWA 1TYWA 1EE6A 4OJPA 5JMCB 2X3HA 2V5IA 4XM3A 4YZAA 5C1EA 2VBEA 2QZAA 2X6WA 3WWGA 4XLHA 4JRAC 2VBMA 3KRGA 1DABA 1QA3A 4XL9A 4OJ5A 4YZ0A 2QYUA 2NTPA 4W8RA 3EQNA 3SY2A 3VSTA 4YC5A 1K4ZA 1O8KA 2O6WA 2NT9A 1LLZA 4XOTA 3SQVA 2G0YA 1O8EA 4YZQA 3B90A 1O8LA 1PLUA 2VJIA 2PECA 2Z8GA 1WXRA 2X85A 5JLVC 4HWVA 4AVZA 3B4NA 2YUHA 1TYVA 2IQ7A 2J8IA 2O17A 4URRA 1OGMX 2QX3A 2UVFA 3H09A 1OOCA 2QXZA 1O8DA 4U49A 2VFNA 4XLFA 1LLWA 3ML3A 1PXZA 3GQ7A 4OZZA 1QA2A 1DBOA 1O8FA 1CLWA 1BHEA 1RU4A 2QY1A 1KCDA 1JRGA 5AMVA 4V02C 1KQ5A 1HF2A 1K5CA 4C2LA 1TYXA 4W8TA 4U4BA 3GRHA 3VMWA 3VMVA 1QJVA 1O8GA 3JX8A 1RWRA 2BM5A 3B8YA 4OM9A 4YFOA 4OZYA 1CZFA 1NHCA 1O8JA 3PSZA 2BM4A 2BM7A 4YEJA 4OJLA 2VFQA 3TH0A 1XG2A 3UW0A 2EWEA 2O04A 1O88A 2PYGA 4XLCA 1IDKA 4YCQA 3RIQA 1QRBA 3LYCA 1JTAA 2NTQA 2NZMA 2J8KA 3PETA 4OJOA 4MXNA 4NK8A 4Z06A 4NK6A 4YEIA 4XQFA 1TYUA 3SYJA 3BH7B 3DU1X 5DNSA 1DBGA 3BH6B 3NAWA 4YZXA 2BSPA 2NTBA 2VFPA 2XTXA 2XTWA 1OGOX
chains in the Genus database with same CATH topology
1K4ZA 2W7ZA 3N6ZA 2VFOA 3JX8A 2BM5A 4OM9A 3SZEA 1TSPA 2G0YA 1K8FA 2BM4A 2B0RA 2BM7A 2BX6A 1WXRA 4KH3A 4OJLA 5JLVC 2VFQA 2YUHA 1TYVA 2J8IA 1QQ1A 3TH0A 4OJ5A 3H09A 2VFPA 2XC1A 1QRBA 3LYCA 2VFNA 2F3LA 3PETA 4OJ6A 4OJOA 3RIQA 3ML3A 1QRCA 1TYWA 4OPWA 2BM6A 4OJPA 5JMCB 1QA1A 2V5IA 1QA2A 1CLWA 2IOUG 3P4GA 1TYUA 3SYJA 3BH7B 4JRAC 1KQ5A 4V02C 1HF2A 1DABA 3BH6B 3AK5A 1QA3A 3N90A 1TYXA 2VFMA 3LJYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFO A;  4OM9 A;  3SZE A;  1TSP A;  1WXR A;  4KH3 A;  2VFQ A;  1TYV A;  3TH0 A;  1QQ1 A;  3H09 A;  2XC1 A;  3RIQ A;  1QRB A;  2VFN A;  3ML3 A;  1QRC A;  1TYX A;  1TYW A;  1QA1 A;  1QA2 A;  2V5I A;  1CLW A;  2IOU G;  1TYU A;  3SYJ A;  1DAB A;  3AK5 A;  1QA3 A;  2VFP A;  2VFM A; 
#chains in the Genus database with same CATH topology
 1PE9 A;  1QCX A;  1EZG A;  3N6Z A;  4PMH A;  1OFL A;  1IDJ A;  1AIR A;  1O8H A;  1RMG A;  2O0W A;  3GQ9 A;  4Z05 A;  2XT4 A;  2O1D A;  4MR0 A;  4XLE A;  3SZE A;  3VSV A;  3VSU A;  2O0V A;  3ZSC A;  3GQ8 A;  2B0R A;  5C1C A;  3FY3 A;  4KH3 A;  1HG8 A;  4XMY A;  4YEL A;  3PSS A;  4XN0 A;  1VBL A;  1IA5 A;  4I84 A;  3SUC A;  2XC1 A;  4XKW A;  4OJ6 A;  1WMR A;  2PYH A;  3JUR A;  1QRC A;  3EQO A;  4OPW A;  2BM6 A;  4W8Q A;  4XR6 A;  4EW9 A;  1QA1 A;  1OFD A;  2XTY A;  2IOU G;  3P4G A;  2VBK A;  4Z03 A;  1BN8 A;  2INV A;  4XKV A;  3T9G A;  2X6X A;  4W8S A;  3AK5 A;  4XON A;  2X6Y A;  4YDT A;  2INU A;  2UVE A;  2VJJ A;  3N90 A;  2NT6 A;  1O8M A;  2VFM A;  4XLA A;  3ZPP A;  3LJY A;  1L1I A;  1IB4 A;  2W7Z A;  1O8I A;  3LMW A;  1GQ8 A;  2NST A;  3NB2 A;  1X0C A;  1LM1 A;  2VFO A;  2XT2 A;  4XOP A;  1OFM A;  1TSP A;  1K8F A;  2ODL A;  3GQA A;  2NSP A;  2BX6 A;  1H80 A;  1EA0 A;  1QQ1 A;  1KCC A;  1OFE A;  4XN3 A;  4XNF A;  2F3L A;  4XOR A;  1KTW A;  1TYW A;  1EE6 A;  4OJP A;  5JMC B;  2X3H A;  2V5I A;  4XM3 A;  4YZA A;  5C1E A;  2VBE A;  2QZA A;  2X6W A;  3WWG A;  4XLH A;  4JRA C;  2VBM A;  3KRG A;  1DAB A;  1QA3 A;  4XL9 A;  4OJ5 A;  4YZ0 A;  2QYU A;  2NTP A;  4W8R A;  3EQN A;  3SY2 A;  3VST A;  4YC5 A;  1K4Z A;  1O8K A;  2O6W A;  2NT9 A;  1LLZ A;  4XOT A;  3SQV A;  2G0Y A;  1O8E A;  4YZQ A;  3B90 A;  1O8L A;  1PLU A;  2VJI A;  2PEC A;  2Z8G A;  1WXR A;  2X85 A;  5JLV C;  4HWV A;  4AVZ A;  3B4N A;  2YUH A;  1TYV A;  2IQ7 A;  2J8I A;  2O17 A;  4URR A;  1OGM X;  2QX3 A;  2UVF A;  3H09 A;  1OOC A;  2QXZ A;  1O8D A;  4U49 A;  2VFN A;  4XLF A;  1LLW A;  3ML3 A;  1PXZ A;  3GQ7 A;  4OZZ A;  1QA2 A;  1DBO A;  1O8F A;  1CLW A;  1BHE A;  1RU4 A;  2QY1 A;  1KCD A;  1JRG A;  5AMV A;  4V02 C;  1KQ5 A;  1HF2 A;  1K5C A;  4C2L A;  1TYX A;  4W8T A;  4U4B A;  3GRH A;  3VMW A;  3VMV A;  1QJV A;  1O8G A;  3JX8 A;  1RWR A;  2BM5 A;  3B8Y A;  4OM9 A;  4YFO A;  4OZY A;  1CZF A;  1NHC A;  1O8J A;  3PSZ A;  2BM4 A;  2BM7 A;  4YEJ A;  4OJL A;  2VFQ A;  3TH0 A;  1XG2 A;  3UW0 A;  2EWE A;  2O04 A;  1O88 A;  2PYG A;  4XLC A;  1IDK A;  4YCQ A;  3RIQ A;  1QRB A;  3LYC A;  1JTA A;  2NTQ A;  2NZM A;  2J8K A;  3PET A;  4OJO A;  4MXN A;  4NK8 A;  4Z06 A;  4NK6 A;  4YEI A;  4XQF A;  1TYU A;  3SYJ A;  3BH7 B;  3DU1 X;  5DNS A;  1DBG A;  3BH6 B;  3NAW A;  4YZX A;  2BSP A;  2NTB A;  2VFP A;  2XTX A;  2XTW A;  1OGO X; 
#chains in the Genus database with same CATH homology
 1K4Z A;  2W7Z A;  3N6Z A;  2VFO A;  3JX8 A;  2BM5 A;  4OM9 A;  3SZE A;  1TSP A;  2G0Y A;  1K8F A;  2BM4 A;  2B0R A;  2BM7 A;  2BX6 A;  1WXR A;  4KH3 A;  4OJL A;  5JLV C;  2VFQ A;  2YUH A;  1TYV A;  2J8I A;  1QQ1 A;  3TH0 A;  4OJ5 A;  3H09 A;  2VFP A;  2XC1 A;  1QRB A;  3LYC A;  2VFN A;  2F3L A;  3PET A;  4OJ6 A;  4OJO A;  3RIQ A;  3ML3 A;  1QRC A;  1TYW A;  4OPW A;  2BM6 A;  4OJP A;  5JMC B;  1QA1 A;  2V5I A;  1QA2 A;  1CLW A;  2IOU G;  3P4G A;  1TYU A;  3SYJ A;  3BH7 B;  4JRA C;  1KQ5 A;  4V02 C;  1HF2 A;  1DAB A;  3BH6 B;  3AK5 A;  1QA3 A;  3N90 A;  1TYX A;  2VFM A;  3LJY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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