1QQ1A

Tailspike protein, mutant e359g
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGGSGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
total genus 189
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qq1A00
3SZEA 1WXRA 1CLWA 3TH0A 1QA3A 4KH3A 1TSPA 1QRCA 2XC1A 2VFQA 2IOUG 1QA1A 2V5IA 1QQ1A 2VFNA 3RIQA 1TYVA 2VFMA 4OM9A 1DABA 1QA2A 1TYUA 2VFPA 3AK5A 3SYJA 1QRBA 3ML3A 3H09A 1TYXA 1TYWA 2VFOA
chains in the Genus database with same CATH superfamily
1O8KA 2VBMA 3BH7B 2UVEA 2NSTA 1WXRA 2XTYA 3TH0A 1OFEA 1LLZA 2VJJA 5JMCB 4YZAA 1O8IA 2NT9A 1QRCA 1AIRA 3N90A 1BHEA 2XC1A 3JX8A 3UW0A 4XKVA 2NZMA 2V5IA 3VSVA 3VSTA 4PMHA 1XG2A 4XLEA 1QQ1A 2X6WA 3B8YA 1QCXA 2G0YA 4XQFA 1O8MA 3P4GA 1DABA 2B0RA 1QA2A 2VFPA 4YEJA 4YEIA 4OJOA 2QX3A 2VBEA 3SQVA 4XLAA 4XN3A 3GQ7A 1L1IA 2O6WA 2VFOA 4XMYA 2NTBA 3VMVA 1CZFA 3FY3A 1WMRA 2ODLA 3PSSA 2BM5A 4OZZA 4URRA 3SUCA 3SZEA 4XOPA 2J8IA 4OJLA 4Z06A 1DBOA 4YELA 4MR0A 3GRHA 5JLVC 3DU1X 2QZAA 2VJIA 4KH3A 1TSPA 4U49A 4W8QA 1OFLA 1JTAA 4XLHA 2INVA 1QA1A 2BX6A 2NSPA 4V02C 1K4ZA 1O8JA 1BN8A 1GQ8A 2QY1A 3JURA 3GQ8A 3LMWA 4XKWA 4XONA 2VFNA 3RIQA 1TYVA 4XOTA 4NK6A 5DNSA 3ZPPA 1EE6A 4OJ5A 1JRGA 4OM9A 4W8TA 3AK5A 1RWRA 1OGOX 2YUHA 2PYGA 3ML3A 3PSZA 4HWVA 4YCQA 1IB4A 1PXZA 1TYXA 4AVZA 1VBLA 4XLFA 1EZGA 2PYHA 1IA5A 1LLWA 3T9GA 2J8KA 4I84A 1IDKA 2O1DA 4MXNA 1X0CA 1CLWA 1K5CA 5C1CA 4XLCA 3WWGA 2PECA 4W8SA 2BM7A 2EWEA 2X6XA 1OGMX 2VFQA 2IOUG 4NK8A 2BM6A 2BSPA 1KCDA 1EA0A 2O0VA 1OFDA 1KQ5A 1O8FA 3EQOA 4W8RA 1LM1A 2NTPA 1O8GA 2O17A 4OPWA 1K8FA 1RU4A 2NT6A 2BM4A 2O0WA 4XR6A 2INUA 3N6ZA 4Z05A 4EW9A 1TYUA 2QXZA 1DBGA 3SYJA 4YZ0A 4YC5A 2XTXA 1QRBA 1O8DA 3H09A 1H80A 1O8LA 1O88A 1TYWA 1O8EA 2IQ7A 2UVFA 2X85A 3BH6B 3PETA 4XN0A 2XT4A 4XNFA 1KTWA 4C2LA 1KCCA 1RMGA 2F3LA 3KRGA 2NTQA 3NB2A 3VMWA 4Z03A 1NHCA 4YZQA 4XL9A 2X3HA 3GQAA 4YFOA 1QA3A 1OOCA 2XTWA 3GQ9A 3NAWA 3VSUA 2QYUA 1HG8A 5C1EA 2VBKA 3SY2A 3EQNA 1OFMA 1HF2A 4XM3A 2VFMA 4XORA 1PE9A 4U4BA 2XT2A 1PLUA 3LJYA 2X6YA 5AMVA 4OJ6A 1IDJA 2W7ZA 1O8HA 2Z8GA 4OZYA 4OJPA 4YDTA 3ZSCA 1QJVA 4YZXA 3LYCA 2O04A 3B4NA 4JRAC 3B90A
chains in the Genus database with same CATH topology
2F3LA 3BH7B 2BM5A 3SZEA 2J8IA 4OJLA 1WXRA 1CLWA 3TH0A 5JMCB 5JLVC 1QA3A 4KH3A 1TSPA 1QRCA 2BM7A 2XC1A 3JX8A 2VFQA 2IOUG 1QA1A 2BX6A 2V5IA 4V02C 2BM6A 1K4ZA 1QQ1A 1KQ5A 2VFNA 1HF2A 3RIQA 1TYVA 2G0YA 2VFMA 4OPWA 1K8FA 4OJ5A 2BM4A 3P4GA 4OM9A 3LJYA 3N6ZA 2B0RA 1TYUA 1DABA 2VFPA 4OJ6A 2W7ZA 4OJOA 3SYJA 1QA2A 2YUHA 3AK5A 1QRBA 3ML3A 3H09A 4OJPA 1TYXA 1TYWA 3PETA 3BH6B 3LYCA 2VFOA 3N90A 4JRAC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZE A;  1WXR A;  1CLW A;  3TH0 A;  1QA3 A;  4KH3 A;  1TSP A;  1QRC A;  2XC1 A;  2VFQ A;  2IOU G;  1QA1 A;  2V5I A;  1QQ1 A;  2VFN A;  3RIQ A;  1TYV A;  2VFM A;  4OM9 A;  1DAB A;  1QA2 A;  1TYU A;  2VFP A;  3AK5 A;  3SYJ A;  1QRB A;  3ML3 A;  3H09 A;  1TYX A;  1TYW A;  2VFO A; 
#chains in the Genus database with same CATH topology
 1O8K A;  2VBM A;  3BH7 B;  2UVE A;  2NST A;  1WXR A;  2XTY A;  3TH0 A;  1OFE A;  1LLZ A;  2VJJ A;  5JMC B;  4YZA A;  1O8I A;  2NT9 A;  1QRC A;  1AIR A;  3N90 A;  1BHE A;  2XC1 A;  3JX8 A;  3UW0 A;  4XKV A;  2NZM A;  2V5I A;  3VSV A;  3VST A;  4PMH A;  1XG2 A;  4XLE A;  1QQ1 A;  2X6W A;  3B8Y A;  1QCX A;  2G0Y A;  4XQF A;  1O8M A;  3P4G A;  1DAB A;  2B0R A;  1QA2 A;  2VFP A;  4YEJ A;  4YEI A;  4OJO A;  2QX3 A;  2VBE A;  3SQV A;  4XLA A;  4XN3 A;  3GQ7 A;  1L1I A;  2O6W A;  2VFO A;  4XMY A;  2NTB A;  3VMV A;  1CZF A;  3FY3 A;  1WMR A;  2ODL A;  3PSS A;  2BM5 A;  4OZZ A;  4URR A;  3SUC A;  3SZE A;  4XOP A;  2J8I A;  4OJL A;  4Z06 A;  1DBO A;  4YEL A;  4MR0 A;  3GRH A;  5JLV C;  3DU1 X;  2QZA A;  2VJI A;  4KH3 A;  1TSP A;  4U49 A;  4W8Q A;  1OFL A;  1JTA A;  4XLH A;  2INV A;  1QA1 A;  2BX6 A;  2NSP A;  4V02 C;  1K4Z A;  1O8J A;  1BN8 A;  1GQ8 A;  2QY1 A;  3JUR A;  3GQ8 A;  3LMW A;  4XKW A;  4XON A;  2VFN A;  3RIQ A;  1TYV A;  4XOT A;  4NK6 A;  5DNS A;  3ZPP A;  1EE6 A;  4OJ5 A;  1JRG A;  4OM9 A;  4W8T A;  3AK5 A;  1RWR A;  1OGO X;  2YUH A;  2PYG A;  3ML3 A;  3PSZ A;  4HWV A;  4YCQ A;  1IB4 A;  1PXZ A;  1TYX A;  4AVZ A;  1VBL A;  4XLF A;  1EZG A;  2PYH A;  1IA5 A;  1LLW A;  3T9G A;  2J8K A;  4I84 A;  1IDK A;  2O1D A;  4MXN A;  1X0C A;  1CLW A;  1K5C A;  5C1C A;  4XLC A;  3WWG A;  2PEC A;  4W8S A;  2BM7 A;  2EWE A;  2X6X A;  1OGM X;  2VFQ A;  2IOU G;  4NK8 A;  2BM6 A;  2BSP A;  1KCD A;  1EA0 A;  2O0V A;  1OFD A;  1KQ5 A;  1O8F A;  3EQO A;  4W8R A;  1LM1 A;  2NTP A;  1O8G A;  2O17 A;  4OPW A;  1K8F A;  1RU4 A;  2NT6 A;  2BM4 A;  2O0W A;  4XR6 A;  2INU A;  3N6Z A;  4Z05 A;  4EW9 A;  1TYU A;  2QXZ A;  1DBG A;  3SYJ A;  4YZ0 A;  4YC5 A;  2XTX A;  1QRB A;  1O8D A;  3H09 A;  1H80 A;  1O8L A;  1O88 A;  1TYW A;  1O8E A;  2IQ7 A;  2UVF A;  2X85 A;  3BH6 B;  3PET A;  4XN0 A;  2XT4 A;  4XNF A;  1KTW A;  4C2L A;  1KCC A;  1RMG A;  2F3L A;  3KRG A;  2NTQ A;  3NB2 A;  3VMW A;  4Z03 A;  1NHC A;  4YZQ A;  4XL9 A;  2X3H A;  3GQA A;  4YFO A;  1QA3 A;  1OOC A;  2XTW A;  3GQ9 A;  3NAW A;  3VSU A;  2QYU A;  1HG8 A;  5C1E A;  2VBK A;  3SY2 A;  3EQN A;  1OFM A;  1HF2 A;  4XM3 A;  2VFM A;  4XOR A;  1PE9 A;  4U4B A;  2XT2 A;  1PLU A;  3LJY A;  2X6Y A;  5AMV A;  4OJ6 A;  1IDJ A;  2W7Z A;  1O8H A;  2Z8G A;  4OZY A;  4OJP A;  4YDT A;  3ZSC A;  1QJV A;  4YZX A;  3LYC A;  2O04 A;  3B4N A;  4JRA C;  3B90 A; 
#chains in the Genus database with same CATH homology
 2F3L A;  3BH7 B;  2BM5 A;  3SZE A;  2J8I A;  4OJL A;  1WXR A;  1CLW A;  3TH0 A;  5JMC B;  5JLV C;  1QA3 A;  4KH3 A;  1TSP A;  1QRC A;  2BM7 A;  2XC1 A;  3JX8 A;  2VFQ A;  2IOU G;  1QA1 A;  2BX6 A;  2V5I A;  4V02 C;  2BM6 A;  1K4Z A;  1QQ1 A;  1KQ5 A;  2VFN A;  1HF2 A;  3RIQ A;  1TYV A;  2G0Y A;  2VFM A;  4OPW A;  1K8F A;  4OJ5 A;  2BM4 A;  3P4G A;  4OM9 A;  3LJY A;  3N6Z A;  2B0R A;  1TYU A;  1DAB A;  2VFP A;  4OJ6 A;  2W7Z A;  4OJO A;  3SYJ A;  1QA2 A;  2YUH A;  3AK5 A;  1QRB A;  3ML3 A;  3H09 A;  4OJP A;  1TYX A;  1TYW A;  3PET A;  3BH6 B;  3LYC A;  2VFO A;  3N90 A;  4JRA C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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