2O6WA

Crystal structure of a pentapeptide repeat protein (rfr23) from the cyanobacterium cyanothece 51142
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
150
structure length
147
Chain Sequence
AMTNNLYRLELERECVGCNLEGVNLPRENFGLKYRIPSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKNTVWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Repeat Five Residue (Rfr) protein or pentapeptide repeat pro
publication title Insights into the structural variation between pentapeptide repeat proteins-Crystal structure of Rfr23 from Cyanothece 51142.
pubmed doi rcsb
source organism Cyanothece
molecule tags Unknown function
total genus 56
structure length 147
sequence length 150
ec nomenclature
pdb deposition date 2006-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2o6wA01
2XTXA 4YDTA 4YFOA 2QZAA 4YCQA 2XTYA 3PSZA 5DNSA 3SQVA 2XT2A 2QYUA 4YEIA 3DU1X 3NB2A 3PSSA 2O6WA 2J8KA 3NAWA 3SY2A 2XTWA 2XT4A 4YC5A
chains in the Genus database with same CATH superfamily
4YDTA 3GRHA 1QRBA 1L1IA 2ODLA 1O8FA 1TYWA 4HWVA 4XNFA 4NK6A 1QA3A 1EZGA 4YZXA 2BSPA 2NTBA 3AK5A 4XN3A 2V5IA 4XR6A 3SQVA 2UVEA 4XKVA 1TYVA 1CZFA 2VFQA 3NB2A 5AMVA 2VJJA 1EA0A 4JRAC 1QQ1A 1KQ5A 3B90A 3ZSCA 2VJIA 3H09A 5C1CA 2VBMA 2O6WA 1O8DA 4XLHA 3GQ9A 1H80A 1PLUA 3P4GA 2INUA 2PYHA 3EQOA 3ML3A 4YZ0A 2VBKA 3B4NA 2O0WA 1QRCA 1IB4A 1O8IA 1DABA 1O8EA 1O8LA 1LLZA 2XTXA 4URRA 1QA2A 4Z05A 4OJPA 1AIRA 1XG2A 4W8SA 4OZZA 2NT9A 4XONA 4Z06A 1GQ8A 3UW0A 2EWEA 1K4ZA 2X6XA 4Z03A 4W8QA 2VFPA 4PMHA 1X0CA 2O04A 4YELA 3DU1X 1KCCA 2X6WA 4OM9A 1O8MA 3PETA 3GQAA 3JURA 1WMRA 2BM7A 4XLCA 3VSUA 1BHEA 1O8GA 2BM6A 5C1EA 2BX6A 1O8HA 4OJ5A 4OPWA 4XLAA 3VMVA 2QY1A 1OOCA 4I84A 2IOUG 3VSTA 3LYCA 3NAWA 3ZPPA 2VFOA 4XORA 2XTWA 2O17A 1PE9A 1K5CA 1HG8A 4AVZA 5JMCB 4YEJA 3SZEA 4XOPA 1CLWA 1RWRA 1PXZA 1IDKA 4OJOA 2PECA 2NZMA 1QJVA 2W7ZA 3VMWA 4XQFA 2B0RA 2QZAA 3LMWA 2XTYA 4YCQA 2Z8GA 2NSPA 3KRGA 4KH3A 4NK8A 1DBOA 3BH6B 2VFMA 4XLEA 4MXNA 2NT6A 1BN8A 4OJ6A 4XOTA 4XMYA 4U49A 2O0VA 3PSSA 1TSPA 1QCXA 1EE6A 2J8KA 2J8IA 1TYUA 1K8FA 4W8TA 1KCDA 2F3LA 2NTPA 1WXRA 3SY2A 1HF2A 4C2LA 1DBGA 3TH0A 3SYJA 1KTWA 4YZAA 2XT4A 2INVA 4YC5A 1NHCA 1TYXA 3B8YA 1LM1A 4XL9A 1LLWA 2O1DA 1OFDA 2VBEA 2IQ7A 2QX3A 3N6ZA 1OFEA 3BH7B 1RU4A 2BM4A 4YFOA 3SUCA 3T9GA 1O8JA 2QXZA 4XN0A 3PSZA 2VFNA 4EW9A 1RMGA 5DNSA 2XT2A 2QYUA 3GQ8A 3N90A 4YEIA 1IDJA 2UVFA 4MR0A 1QA1A 2NTQA 2NSTA 2X6YA 4V02C 4U4BA 2YUHA 4W8RA 3FY3A 2G0YA 1OFLA 2BM5A 3EQNA 3LJYA 5JLVC 2XC1A 1JTAA 1O88A 2PYGA 4OJLA 1OFMA 3JX8A 4XKWA 3GQ7A 1JRGA 3VSVA 4YZQA 1VBLA 4OZYA 4XM3A 2X85A 1IA5A 1OGOX 4XLFA 2X3HA 1O8KA 1OGMX 3RIQA 3WWGA
chains in the Genus database with same CATH topology
2XTXA 4YDTA 4YFOA 2QZAA 4YCQA 2XTYA 3PSZA 5DNSA 3SQVA 2XT2A 2QYUA 4YEIA 3DU1X 3NB2A 3PSSA 2O6WA 2J8KA 3NAWA 3SY2A 2XTWA 2XT4A 4YC5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XTX A;  4YDT A;  4YFO A;  2QZA A;  4YCQ A;  2XTY A;  3PSZ A;  5DNS A;  3SQV A;  2XT2 A;  2QYU A;  4YEI A;  3DU1 X;  3NB2 A;  3PSS A;  2O6W A;  2J8K A;  3NAW A;  3SY2 A;  2XTW A;  2XT4 A;  4YC5 A; 
#chains in the Genus database with same CATH topology
 4YDT A;  3GRH A;  1QRB A;  1L1I A;  2ODL A;  1O8F A;  1TYW A;  4HWV A;  4XNF A;  4NK6 A;  1QA3 A;  1EZG A;  4YZX A;  2BSP A;  2NTB A;  3AK5 A;  4XN3 A;  2V5I A;  4XR6 A;  3SQV A;  2UVE A;  4XKV A;  1TYV A;  1CZF A;  2VFQ A;  3NB2 A;  5AMV A;  2VJJ A;  1EA0 A;  4JRA C;  1QQ1 A;  1KQ5 A;  3B90 A;  3ZSC A;  2VJI A;  3H09 A;  5C1C A;  2VBM A;  2O6W A;  1O8D A;  4XLH A;  3GQ9 A;  1H80 A;  1PLU A;  3P4G A;  2INU A;  2PYH A;  3EQO A;  3ML3 A;  4YZ0 A;  2VBK A;  3B4N A;  2O0W A;  1QRC A;  1IB4 A;  1O8I A;  1DAB A;  1O8E A;  1O8L A;  1LLZ A;  2XTX A;  4URR A;  1QA2 A;  4Z05 A;  4OJP A;  1AIR A;  1XG2 A;  4W8S A;  4OZZ A;  2NT9 A;  4XON A;  4Z06 A;  1GQ8 A;  3UW0 A;  2EWE A;  1K4Z A;  2X6X A;  4Z03 A;  4W8Q A;  2VFP A;  4PMH A;  1X0C A;  2O04 A;  4YEL A;  3DU1 X;  1KCC A;  2X6W A;  4OM9 A;  1O8M A;  3PET A;  3GQA A;  3JUR A;  1WMR A;  2BM7 A;  4XLC A;  3VSU A;  1BHE A;  1O8G A;  2BM6 A;  5C1E A;  2BX6 A;  1O8H A;  4OJ5 A;  4OPW A;  4XLA A;  3VMV A;  2QY1 A;  1OOC A;  4I84 A;  2IOU G;  3VST A;  3LYC A;  3NAW A;  3ZPP A;  2VFO A;  4XOR A;  2XTW A;  2O17 A;  1PE9 A;  1K5C A;  1HG8 A;  4AVZ A;  5JMC B;  4YEJ A;  3SZE A;  4XOP A;  1CLW A;  1RWR A;  1PXZ A;  1IDK A;  4OJO A;  2PEC A;  2NZM A;  1QJV A;  2W7Z A;  3VMW A;  4XQF A;  2B0R A;  2QZA A;  3LMW A;  2XTY A;  4YCQ A;  2Z8G A;  2NSP A;  3KRG A;  4KH3 A;  4NK8 A;  1DBO A;  3BH6 B;  2VFM A;  4XLE A;  4MXN A;  2NT6 A;  1BN8 A;  4OJ6 A;  4XOT A;  4XMY A;  4U49 A;  2O0V A;  3PSS A;  1TSP A;  1QCX A;  1EE6 A;  2J8K A;  2J8I A;  1TYU A;  1K8F A;  4W8T A;  1KCD A;  2F3L A;  2NTP A;  1WXR A;  3SY2 A;  1HF2 A;  4C2L A;  1DBG A;  3TH0 A;  3SYJ A;  1KTW A;  4YZA A;  2XT4 A;  2INV A;  4YC5 A;  1NHC A;  1TYX A;  3B8Y A;  1LM1 A;  4XL9 A;  1LLW A;  2O1D A;  1OFD A;  2VBE A;  2IQ7 A;  2QX3 A;  3N6Z A;  1OFE A;  3BH7 B;  1RU4 A;  2BM4 A;  4YFO A;  3SUC A;  3T9G A;  1O8J A;  2QXZ A;  4XN0 A;  3PSZ A;  2VFN A;  4EW9 A;  1RMG A;  5DNS A;  2XT2 A;  2QYU A;  3GQ8 A;  3N90 A;  4YEI A;  1IDJ A;  2UVF A;  4MR0 A;  1QA1 A;  2NTQ A;  2NST A;  2X6Y A;  4V02 C;  4U4B A;  2YUH A;  4W8R A;  3FY3 A;  2G0Y A;  1OFL A;  2BM5 A;  3EQN A;  3LJY A;  5JLV C;  2XC1 A;  1JTA A;  1O88 A;  2PYG A;  4OJL A;  1OFM A;  3JX8 A;  4XKW A;  3GQ7 A;  1JRG A;  3VSV A;  4YZQ A;  1VBL A;  4OZY A;  4XM3 A;  2X85 A;  1IA5 A;  1OGO X;  4XLF A;  2X3H A;  1O8K A;  1OGM X;  3RIQ A;  3WWG A; 
#chains in the Genus database with same CATH homology
 2XTX A;  4YDT A;  4YFO A;  2QZA A;  4YCQ A;  2XTY A;  3PSZ A;  5DNS A;  3SQV A;  2XT2 A;  2QYU A;  4YEI A;  3DU1 X;  3NB2 A;  3PSS A;  2O6W A;  2J8K A;  3NAW A;  3SY2 A;  2XTW A;  2XT4 A;  4YC5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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