2O6WA

Crystal structure of a pentapeptide repeat protein (rfr23) from the cyanobacterium cyanothece 51142
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
150
structure length
147
Chain Sequence
AMTNNLYRLELERECVGCNLEGVNLPRENFGLKYRIPSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKNTVWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Cyanothece
publication title Insights into the structural variation between pentapeptide repeat proteins-Crystal structure of Rfr23 from Cyanothece 51142.
pubmed doi rcsb
molecule keywords Repeat Five Residue (Rfr) protein or pentapeptide repeat pro
total genus 56
structure length 147
sequence length 150
ec nomenclature
pdb deposition date 2006-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2o6wA01
4YFOA 2XT4A 2QZAA 4YDTA 5DNSA 2XTYA 2XTWA 2O6WA 2XTXA 4YEIA 3PSZA 3NB2A 3DU1X 3SQVA 2QYUA 3PSSA 2XT2A 3NAWA 4YCQA 3SY2A 4YC5A 2J8KA
chains in the Genus database with same CATH superfamily
1OGOX 4YFOA 1IA5A 2NTBA 4XN0A 5JLVC 4YDTA 1RMGA 3EQNA 1O8GA 1O8IA 3B90A 1X0CA 3BH7B 3JX8A 3SYJA 3SZEA 2XTYA 4OJLA 4XKWA 1QJVA 1NHCA 2O6WA 1VBLA 4XOTA 1O8EA 4U4BA 3RIQA 3AK5A 3PSZA 4XL9A 2X6WA 2PECA 3VMVA 1O88A 1TYUA 2NSPA 3ZPPA 1XG2A 1RU4A 2BM7A 2X6XA 2NTPA 2VBKA 4C2LA 2BM6A 4OJ5A 2O1DA 4W8RA 4YCQA 4MXNA 1TYVA 3ML3A 1O8DA 1HG8A 2IOUG 2VJIA 4HWVA 3SY2A 1QA3A 5AMVA 2INVA 4V02C 2NTQA 4JRAC 4YC5A 1CLWA 1O8LA 1CZFA 2XT4A 4OPWA 4W8SA 1AIRA 4NK8A 1RWRA 1QRBA 1OFEA 2F3LA 2ODLA 1K8FA 1WMRA 4YELA 3H09A 4URRA 2EWEA 2XTWA 4XLHA 1IB4A 2XTXA 4YEIA 3LYCA 4YZAA 2INUA 3NB2A 1OFDA 2BX6A 3B4NA 3DU1X 1O8KA 4OM9A 3FY3A 3P4GA 4YEJA 3GQ9A 4YZ0A 1EE6A 3SQVA 2VJJA 4Z06A 3PSSA 1KCDA 2VFNA 2XT2A 3GRHA 5JMCB 1QA2A 3B8YA 1O8HA 1QRCA 4MR0A 1DBGA 4PMHA 4XORA 2B0RA 2O0VA 4OZZA 1LM1A 2G0YA 1PE9A 1PLUA 2VBMA 2V5IA 1BN8A 2XC1A 1O8JA 2VFPA 3BH6B 3GQ8A 2NT9A 5DNSA 2BM4A 2BSPA 4XM3A 4OJOA 1PXZA 4KH3A 1O8FA 3T9GA 3N6ZA 2NSTA 1TSPA 2BM5A 4XNFA 1HF2A 1O8MA 1QQ1A 1BHEA 4YZQA 4I84A 3TH0A 2QX3A 4U49A 3JURA 1EA0A 1K5CA 4AVZA 4XN3A 1H80A 2X3HA 2X85A 2NT6A 2O04A 1QCXA 4OZYA 2X6YA 2QY1A 2YUHA 2O0WA 3LJYA 4XLAA 5C1EA 3WWGA 2PYGA 2J8KA 4XOPA 1WXRA 1L1IA 3GQAA 4XLEA 3SUCA 1TYXA 1GQ8A 4XR6A 2QZAA 3LMWA 4NK6A 4XMYA 1IDJA 2UVEA 4W8TA 4OJ6A 1JRGA 3GQ7A 2VBEA 2QXZA 2VFMA 3PETA 4OJPA 2IQ7A 1K4ZA 1OOCA 1KTWA 3VMWA 1EZGA 4Z05A 4XKVA 1DABA 1KCCA 3ZSCA 2NZMA 4W8QA 1DBOA 2W7ZA 2QYUA 3EQOA 3N90A 3KRGA 2PYHA 2VFQA 4XLCA 2UVFA 2VFOA 3NAWA 1KQ5A 1OFLA 4XLFA 3VSVA 2O17A 3VSUA 1QA1A 2Z8GA 1LLWA 4EW9A 3VSTA 4XQFA 5C1CA 1OFMA 4YZXA 1JTAA 4Z03A 1IDKA 4XONA 1LLZA 2J8IA 3UW0A 1OGMX 1TYWA
chains in the Genus database with same CATH topology
4YFOA 2XT4A 2QZAA 4YDTA 5DNSA 2XTYA 2XTWA 2O6WA 2XTXA 4YEIA 3PSZA 3NB2A 3DU1X 3SQVA 2QYUA 3PSSA 2XT2A 3NAWA 4YCQA 3SY2A 4YC5A 2J8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YFO A;  2XT4 A;  2QZA A;  4YDT A;  5DNS A;  2XTY A;  2XTW A;  2O6W A;  2XTX A;  4YEI A;  3PSZ A;  3NB2 A;  3DU1 X;  3SQV A;  2QYU A;  3PSS A;  2XT2 A;  3NAW A;  4YCQ A;  3SY2 A;  4YC5 A;  2J8K A; 
#chains in the Genus database with same CATH topology
 1OGO X;  4YFO A;  1IA5 A;  2NTB A;  4XN0 A;  5JLV C;  4YDT A;  1RMG A;  3EQN A;  1O8G A;  1O8I A;  3B90 A;  1X0C A;  3BH7 B;  3JX8 A;  3SYJ A;  3SZE A;  2XTY A;  4OJL A;  4XKW A;  1QJV A;  1NHC A;  2O6W A;  1VBL A;  4XOT A;  1O8E A;  4U4B A;  3RIQ A;  3AK5 A;  3PSZ A;  4XL9 A;  2X6W A;  2PEC A;  3VMV A;  1O88 A;  1TYU A;  2NSP A;  3ZPP A;  1XG2 A;  1RU4 A;  2BM7 A;  2X6X A;  2NTP A;  2VBK A;  4C2L A;  2BM6 A;  4OJ5 A;  2O1D A;  4W8R A;  4YCQ A;  4MXN A;  1TYV A;  3ML3 A;  1O8D A;  1HG8 A;  2IOU G;  2VJI A;  4HWV A;  3SY2 A;  1QA3 A;  5AMV A;  2INV A;  4V02 C;  2NTQ A;  4JRA C;  4YC5 A;  1CLW A;  1O8L A;  1CZF A;  2XT4 A;  4OPW A;  4W8S A;  1AIR A;  4NK8 A;  1RWR A;  1QRB A;  1OFE A;  2F3L A;  2ODL A;  1K8F A;  1WMR A;  4YEL A;  3H09 A;  4URR A;  2EWE A;  2XTW A;  4XLH A;  1IB4 A;  2XTX A;  4YEI A;  3LYC A;  4YZA A;  2INU A;  3NB2 A;  1OFD A;  2BX6 A;  3B4N A;  3DU1 X;  1O8K A;  4OM9 A;  3FY3 A;  3P4G A;  4YEJ A;  3GQ9 A;  4YZ0 A;  1EE6 A;  3SQV A;  2VJJ A;  4Z06 A;  3PSS A;  1KCD A;  2VFN A;  2XT2 A;  3GRH A;  5JMC B;  1QA2 A;  3B8Y A;  1O8H A;  1QRC A;  4MR0 A;  1DBG A;  4PMH A;  4XOR A;  2B0R A;  2O0V A;  4OZZ A;  1LM1 A;  2G0Y A;  1PE9 A;  1PLU A;  2VBM A;  2V5I A;  1BN8 A;  2XC1 A;  1O8J A;  2VFP A;  3BH6 B;  3GQ8 A;  2NT9 A;  5DNS A;  2BM4 A;  2BSP A;  4XM3 A;  4OJO A;  1PXZ A;  4KH3 A;  1O8F A;  3T9G A;  3N6Z A;  2NST A;  1TSP A;  2BM5 A;  4XNF A;  1HF2 A;  1O8M A;  1QQ1 A;  1BHE A;  4YZQ A;  4I84 A;  3TH0 A;  2QX3 A;  4U49 A;  3JUR A;  1EA0 A;  1K5C A;  4AVZ A;  4XN3 A;  1H80 A;  2X3H A;  2X85 A;  2NT6 A;  2O04 A;  1QCX A;  4OZY A;  2X6Y A;  2QY1 A;  2YUH A;  2O0W A;  3LJY A;  4XLA A;  5C1E A;  3WWG A;  2PYG A;  2J8K A;  4XOP A;  1WXR A;  1L1I A;  3GQA A;  4XLE A;  3SUC A;  1TYX A;  1GQ8 A;  4XR6 A;  2QZA A;  3LMW A;  4NK6 A;  4XMY A;  1IDJ A;  2UVE A;  4W8T A;  4OJ6 A;  1JRG A;  3GQ7 A;  2VBE A;  2QXZ A;  2VFM A;  3PET A;  4OJP A;  2IQ7 A;  1K4Z A;  1OOC A;  1KTW A;  3VMW A;  1EZG A;  4Z05 A;  4XKV A;  1DAB A;  1KCC A;  3ZSC A;  2NZM A;  4W8Q A;  1DBO A;  2W7Z A;  2QYU A;  3EQO A;  3N90 A;  3KRG A;  2PYH A;  2VFQ A;  4XLC A;  2UVF A;  2VFO A;  3NAW A;  1KQ5 A;  1OFL A;  4XLF A;  3VSV A;  2O17 A;  3VSU A;  1QA1 A;  2Z8G A;  1LLW A;  4EW9 A;  3VST A;  4XQF A;  5C1C A;  1OFM A;  4YZX A;  1JTA A;  4Z03 A;  1IDK A;  4XON A;  1LLZ A;  2J8I A;  3UW0 A;  1OGM X;  1TYW A; 
#chains in the Genus database with same CATH homology
 4YFO A;  2XT4 A;  2QZA A;  4YDT A;  5DNS A;  2XTY A;  2XTW A;  2O6W A;  2XTX A;  4YEI A;  3PSZ A;  3NB2 A;  3DU1 X;  3SQV A;  2QYU A;  3PSS A;  2XT2 A;  3NAW A;  4YCQ A;  3SY2 A;  4YC5 A;  2J8K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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