2O6WA

Crystal structure of a pentapeptide repeat protein (rfr23) from the cyanobacterium cyanothece 51142
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
150
structure length
147
Chain Sequence
AMTNNLYRLELERECVGCNLEGVNLPRENFGLKYRIPSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKNTVWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Repeat Five Residue (Rfr) protein or pentapeptide repeat pro
publication title Insights into the structural variation between pentapeptide repeat proteins-Crystal structure of Rfr23 from Cyanothece 51142.
pubmed doi rcsb
source organism Cyanothece
total genus 56
structure length 147
sequence length 150
ec nomenclature
pdb deposition date 2006-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2o6wA01
2QYUA 3PSZA 2XT2A 4YEIA 3SQVA 2XTWA 3PSSA 4YCQA 4YDTA 3SY2A 3NB2A 5DNSA 2XTYA 2O6WA 2XT4A 3DU1X 2XTXA 4YFOA 3NAWA 4YC5A 2J8KA 2QZAA
chains in the Genus database with same CATH superfamily
1O8IA 3LMWA 1BHEA 1HF2A 1QQ1A 2BX6A 2Z8GA 1LLZA 4JRAC 4W8TA 1O88A 4U49A 4AVZA 2BM6A 2VJJA 4XLHA 3B90A 2QYUA 2X85A 1KCDA 1CLWA 2B0RA 2O0WA 3VSTA 1JRGA 5C1CA 2VBKA 1TYWA 2V5IA 3T9GA 4XORA 2XT2A 4OM9A 4OZZA 4OJLA 4MXNA 3SUCA 2VFQA 4OZYA 2X6YA 2NTBA 2BM5A 2NT6A 4XN0A 1TYUA 4YELA 1H80A 3P4GA 1GQ8A 1LLWA 1DBOA 2QXZA 2VJIA 3NB2A 1VBLA 2XT4A 1QA1A 1PE9A 3BH6B 3UW0A 1JTAA 3VMWA 4YZQA 2F3LA 4XONA 4XQFA 3NAWA 3JURA 3JX8A 4XOPA 1CZFA 3PETA 1BN8A 3N90A 1OFMA 4OPWA 4XM3A 2G0YA 1PXZA 4KH3A 1KTWA 3BH7B 2NTQA 3LJYA 4XLAA 4NK8A 1QCXA 3B4NA 4OJOA 3GQ9A 2NT9A 1EZGA 4NK6A 1TYXA 2EWEA 4XNFA 3N6ZA 4HWVA 1O8JA 1K5CA 4XMYA 2PYGA 4XLFA 1LM1A 1K4ZA 4XKVA 3GQAA 2NSTA 2UVEA 1QA3A 2XTWA 1OGMX 2NZMA 2VFMA 1WXRA 1L1IA 1IA5A 1TSPA 3EQNA 2INUA 5DNSA 2IOUG 2NSPA 5JLVC 1OGOX 1KCCA 3DU1X 4YZAA 2X3HA 1RMGA 2ODLA 2X6XA 4W8RA 3ZSCA 1O8FA 1DABA 1RU4A 3EQOA 1IDKA 1EE6A 1XG2A 1QJVA 1O8HA 3VSUA 4I84A 2O1DA 3H09A 2NTPA 4MR0A 4XKWA 5JMCB 5AMVA 1O8MA 1OFDA 4W8QA 4Z06A 1QRCA 2INVA 4XOTA 4URRA 3RIQA 1KQ5A 2QY1A 4YEIA 2O04A 3SQVA 3WWGA 1O8KA 4YEJA 3SYJA 1X0CA 3GQ8A 1OFEA 4XLCA 4YDTA 3FY3A 1O8GA 1OFLA 1AIRA 2BSPA 3GRHA 3ZPPA 1PLUA 3VMVA 3AK5A 2QX3A 1OOCA 3GQ7A 3ML3A 4OJ5A 4Z05A 3TH0A 2UVFA 2VFPA 2X6WA 4W8SA 2IQ7A 4XN3A 5C1EA 1IDJA 2J8KA 2QZAA 2VBMA 4OJPA 4Z03A 4YZXA 2XC1A 1DBGA 4V02C 1HG8A 2VFNA 2YUHA 2VBEA 4U4BA 3VSVA 3PSZA 4YZ0A 2PYHA 2VFOA 1IB4A 2BM4A 2O0VA 2PECA 1QA2A 1EA0A 1K8FA 1TYVA 1O8EA 3PSSA 4EW9A 4YCQA 4XLEA 1QRBA 1O8LA 4XL9A 3SZEA 3SY2A 4C2LA 1NHCA 3B8YA 2W7ZA 1O8DA 2XTYA 2O6WA 3KRGA 4PMHA 1WMRA 2J8IA 2O17A 2XTXA 3LYCA 2BM7A 4XR6A 4YFOA 4OJ6A 1RWRA 4YC5A
chains in the Genus database with same CATH topology
2QYUA 3PSZA 2XT2A 4YEIA 3SQVA 2XTWA 3PSSA 4YCQA 4YDTA 3SY2A 3NB2A 5DNSA 2XTYA 2O6WA 2XT4A 3DU1X 2XTXA 4YFOA 3NAWA 4YC5A 2J8KA 2QZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QYU A;  3PSZ A;  2XT2 A;  4YEI A;  3SQV A;  2XTW A;  3PSS A;  4YCQ A;  4YDT A;  3SY2 A;  3NB2 A;  5DNS A;  2XTY A;  2O6W A;  2XT4 A;  3DU1 X;  2XTX A;  4YFO A;  3NAW A;  4YC5 A;  2J8K A;  2QZA A; 
#chains in the Genus database with same CATH topology
 1O8I A;  3LMW A;  1BHE A;  1HF2 A;  1QQ1 A;  2BX6 A;  2Z8G A;  1LLZ A;  4JRA C;  4W8T A;  1O88 A;  4U49 A;  4AVZ A;  2BM6 A;  2VJJ A;  4XLH A;  3B90 A;  2QYU A;  2X85 A;  1KCD A;  1CLW A;  2B0R A;  2O0W A;  3VST A;  1JRG A;  5C1C A;  2VBK A;  1TYW A;  2V5I A;  3T9G A;  4XOR A;  2XT2 A;  4OM9 A;  4OZZ A;  4OJL A;  4MXN A;  3SUC A;  2VFQ A;  4OZY A;  2X6Y A;  2NTB A;  2BM5 A;  2NT6 A;  4XN0 A;  1TYU A;  4YEL A;  1H80 A;  3P4G A;  1GQ8 A;  1LLW A;  1DBO A;  2QXZ A;  2VJI A;  3NB2 A;  1VBL A;  2XT4 A;  1QA1 A;  1PE9 A;  3BH6 B;  3UW0 A;  1JTA A;  3VMW A;  4YZQ A;  2F3L A;  4XON A;  4XQF A;  3NAW A;  3JUR A;  3JX8 A;  4XOP A;  1CZF A;  3PET A;  1BN8 A;  3N90 A;  1OFM A;  4OPW A;  4XM3 A;  2G0Y A;  1PXZ A;  4KH3 A;  1KTW A;  3BH7 B;  2NTQ A;  3LJY A;  4XLA A;  4NK8 A;  1QCX A;  3B4N A;  4OJO A;  3GQ9 A;  2NT9 A;  1EZG A;  4NK6 A;  1TYX A;  2EWE A;  4XNF A;  3N6Z A;  4HWV A;  1O8J A;  1K5C A;  4XMY A;  2PYG A;  4XLF A;  1LM1 A;  1K4Z A;  4XKV A;  3GQA A;  2NST A;  2UVE A;  1QA3 A;  2XTW A;  1OGM X;  2NZM A;  2VFM A;  1WXR A;  1L1I A;  1IA5 A;  1TSP A;  3EQN A;  2INU A;  5DNS A;  2IOU G;  2NSP A;  5JLV C;  1OGO X;  1KCC A;  3DU1 X;  4YZA A;  2X3H A;  1RMG A;  2ODL A;  2X6X A;  4W8R A;  3ZSC A;  1O8F A;  1DAB A;  1RU4 A;  3EQO A;  1IDK A;  1EE6 A;  1XG2 A;  1QJV A;  1O8H A;  3VSU A;  4I84 A;  2O1D A;  3H09 A;  2NTP A;  4MR0 A;  4XKW A;  5JMC B;  5AMV A;  1O8M A;  1OFD A;  4W8Q A;  4Z06 A;  1QRC A;  2INV A;  4XOT A;  4URR A;  3RIQ A;  1KQ5 A;  2QY1 A;  4YEI A;  2O04 A;  3SQV A;  3WWG A;  1O8K A;  4YEJ A;  3SYJ A;  1X0C A;  3GQ8 A;  1OFE A;  4XLC A;  4YDT A;  3FY3 A;  1O8G A;  1OFL A;  1AIR A;  2BSP A;  3GRH A;  3ZPP A;  1PLU A;  3VMV A;  3AK5 A;  2QX3 A;  1OOC A;  3GQ7 A;  3ML3 A;  4OJ5 A;  4Z05 A;  3TH0 A;  2UVF A;  2VFP A;  2X6W A;  4W8S A;  2IQ7 A;  4XN3 A;  5C1E A;  1IDJ A;  2J8K A;  2QZA A;  2VBM A;  4OJP A;  4Z03 A;  4YZX A;  2XC1 A;  1DBG A;  4V02 C;  1HG8 A;  2VFN A;  2YUH A;  2VBE A;  4U4B A;  3VSV A;  3PSZ A;  4YZ0 A;  2PYH A;  2VFO A;  1IB4 A;  2BM4 A;  2O0V A;  2PEC A;  1QA2 A;  1EA0 A;  1K8F A;  1TYV A;  1O8E A;  3PSS A;  4EW9 A;  4YCQ A;  4XLE A;  1QRB A;  1O8L A;  4XL9 A;  3SZE A;  3SY2 A;  4C2L A;  1NHC A;  3B8Y A;  2W7Z A;  1O8D A;  2XTY A;  2O6W A;  3KRG A;  4PMH A;  1WMR A;  2J8I A;  2O17 A;  2XTX A;  3LYC A;  2BM7 A;  4XR6 A;  4YFO A;  4OJ6 A;  1RWR A;  4YC5 A; 
#chains in the Genus database with same CATH homology
 2QYU A;  3PSZ A;  2XT2 A;  4YEI A;  3SQV A;  2XTW A;  3PSS A;  4YCQ A;  4YDT A;  3SY2 A;  3NB2 A;  5DNS A;  2XTY A;  2O6W A;  2XT4 A;  3DU1 X;  2XTX A;  4YFO A;  3NAW A;  4YC5 A;  2J8K A;  2QZA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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