1QCXA

Pectin lyase b
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
359
structure length
359
Chain Sequence
b'AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSGSMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The tree-dimensional structure of aspergillus niger pectin lyase B at 1.7-A resolution.
pubmed doi rcsb
molecule keywords PECTIN LYASE B
molecule tags Lyase
total genus 137
structure length 359
sequence length 359
ec nomenclature ec 4.2.2.10: Pectin lyase.
pdb deposition date 1999-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1qcxA00
1OFMA 4U49A 1BN8A 2Z8GA 1RU4A 1KTWA 2O0VA 1IDKA 4XR6A 1KCDA 2QY1A 1H80A 1OOCA 1NHCA 1RWRA 2IQ7A 2O17A 2NTPA 1WMRA 3EQNA 4NK8A 4XKWA 4XLCA 1O8HA 3LMWA 1OFLA 2O04A 4I84A 4XN0A 1QJVA 1DBGA 4XM3A 4XLAA 2INUA 4W8TA 1O8DA 2VBKA 3EQOA 4YZ0A 3GQ9A 4OJPA 4XORA 3B90A 3VMWA 4XKVA 4OJLA 4OJ5A 4MR0A 2PECA 4Z06A 1O8FA 1PE9A 3GQAA 4URRA 1K5CA 3VSUA 4Z03A 4W8QA 1PLUA 4XLFA 1GQ8A 2PYHA 2ODLA 3FY3A 4YZXA 3UW0A 4NK6A 2VJIA 3WWGA 3VMVA 2UVEA 1JRGA 4XOPA 2O1DA 3ZPPA 2X85A 2X3HA 1O88A 1RMGA 3T9GA 4OJ6A 2X6YA 1EE6A 3SUCA 2EWEA 2VBMA 1DBOA 2O0WA 1O8GA 3GQ7A 2NTBA 5C1CA 1PXZA 3B8YA 1O8KA 2QXZA 3B4NA 2PYGA 4XLEA 1IA5A 1IDJA 1QCXA 1XG2A 4PMHA 4U4BA 3ZSCA 4OZYA 1O8IA 2NTQA 1O8LA 3VSTA 1IB4A 2X6WA 1HG8A 1OGOX 2NSPA 1O8EA 2INVA 4OZZA 4YELA 2BSPA 1KCCA 4EW9A 2NZMA 2NT9A 3JURA 1VBLA 2UVFA 3GQ8A 4XNFA 3VSVA 2X6XA 4W8SA 3GRHA 2NSTA 5C1EA 1OGMX 4YZAA 4W8RA 1AIRA 4MXNA 4OJOA 4XLHA 4XN3A 4YEJA 2VBEA 1X0CA 4XQFA 4XONA 1O8JA 5AMVA 4XMYA 2VJJA 1BHEA 1CZFA 4HWVA 4XOTA 2NT6A 2QX3A 1O8MA 4YZQA 4AVZA 3KRGA 1JTAA 4XL9A 4C2LA 4Z05A
chains in the Genus database with same CATH superfamily
1OFMA 2V5IA 1BN8A 2Z8GA 4U49A 4YDTA 1RU4A 1KTWA 2O0VA 1CLWA 1IDKA 4XR6A 2YUHA 3H09A 2QY1A 1KCDA 2XT4A 1H80A 3N6ZA 4JRAC 1OOCA 1NHCA 2W7ZA 1KQ5A 1RWRA 2IQ7A 3N90A 2O17A 2NTPA 5JMCB 1WMRA 3EQNA 2VFQA 1QRBA 2B0RA 1WXRA 2QYUA 4NK8A 4XKWA 4XLCA 1LLWA 1O8HA 3LMWA 1OFLA 3LYCA 3PETA 2O04A 3BH7B 4I84A 4XN0A 1QJVA 1DBGA 4XM3A 4XLAA 2INUA 4W8TA 1O8DA 2VBKA 3EQOA 4YZ0A 4OM9A 3GQ9A 4OJPA 4XORA 3B90A 2IOUG 3VMWA 4XKVA 4OJLA 4OJ5A 4MR0A 3TH0A 1L1IA 2PECA 4Z06A 1O8FA 1PE9A 3GQAA 4URRA 2XTYA 4YC5A 3VSUA 1K5CA 2VFOA 2G0YA 4W8QA 4Z03A 1OFDA 1PLUA 4XLFA 1GQ8A 2PYHA 2ODLA 2O6WA 3FY3A 4YZXA 2BM6A 3SYJA 1TSPA 5DNSA 3ML3A 4NK6A 2VJIA 3UW0A 3SZEA 3WWGA 2XTXA 1QA1A 1HF2A 3BH6B 3VMVA 2UVEA 1JRGA 4OPWA 1QA3A 4XOPA 2O1DA 3ZPPA 2X85A 2X3HA 5JLVC 1O88A 1RMGA 3T9GA 4OJ6A 2XTWA 2X6YA 1EE6A 3SUCA 2EWEA 2VBMA 1DBOA 2O0WA 1O8GA 1TYUA 2F3LA 3GQ7A 3RIQA 2NTBA 2J8KA 5C1CA 1PXZA 3B8YA 1O8KA 2QXZA 3B4NA 2PYGA 1QRCA 4XLEA 3SY2A 1IA5A 1K4ZA 1IDJA 1QCXA 1TYXA 1XG2A 2VFPA 4PMHA 2BX6A 4U4BA 3ZSCA 4OZYA 1O8IA 2NTQA 1DABA 1O8LA 3VSTA 1IB4A 2X6WA 1HG8A 3P4GA 1OGOX 2NSPA 1O8EA 2INVA 2QZAA 4KH3A 4OZZA 4YELA 2VFNA 4YEIA 3AK5A 2BSPA 1KCCA 4YCQA 4EW9A 1QQ1A 2NZMA 3JX8A 2BM5A 2NT9A 3JURA 1VBLA 1QA2A 2UVFA 3GQ8A 4XNFA 2XC1A 3VSVA 2X6XA 4W8SA 3GRHA 2NSTA 5C1EA 1OGMX 1OFEA 4V02C 4YZAA 2BM7A 1AIRA 4MXNA 4W8RA 4OJOA 4XLHA 3PSZA 4XN3A 4YEJA 2VBEA 1X0CA 4XQFA 3NAWA 1LLZA 4XONA 1EA0A 1O8JA 5AMVA 1K8FA 4XMYA 2VJJA 1BHEA 1CZFA 4HWVA 3SQVA 1LM1A 3DU1X 4XOTA 2NT6A 3NB2A 2QX3A 3LJYA 1O8MA 2VFMA 4YZQA 4AVZA 1TYVA 1EZGA 3KRGA 3PSSA 1JTAA 2BM4A 2J8IA 4XL9A 2XT2A 4C2LA 1TYWA 4Z05A 4YFOA
chains in the Genus database with same CATH topology
1OFMA 4U49A 1BN8A 2Z8GA 1RU4A 1KTWA 2O0VA 1IDKA 4XR6A 1KCDA 2QY1A 1H80A 1OOCA 1NHCA 1RWRA 2IQ7A 2O17A 2NTPA 1WMRA 3EQNA 4NK8A 4XKWA 4XLCA 1O8HA 3LMWA 1OFLA 2O04A 4I84A 4XN0A 1QJVA 1DBGA 4XM3A 4XLAA 2INUA 4W8TA 1O8DA 2VBKA 3EQOA 4YZ0A 3GQ9A 4OJPA 4XORA 3B90A 3VMWA 4XKVA 4OJLA 4OJ5A 4MR0A 2PECA 4Z06A 1O8FA 1PE9A 3GQAA 4URRA 1K5CA 3VSUA 4Z03A 4W8QA 1PLUA 4XLFA 1GQ8A 2PYHA 2ODLA 3FY3A 4YZXA 3UW0A 4NK6A 2VJIA 3WWGA 3VMVA 2UVEA 1JRGA 4XOPA 2O1DA 3ZPPA 2X85A 2X3HA 1O88A 1RMGA 3T9GA 4OJ6A 2X6YA 1EE6A 3SUCA 2EWEA 2VBMA 1DBOA 2O0WA 1O8GA 3GQ7A 2NTBA 5C1CA 1PXZA 3B8YA 1O8KA 2QXZA 3B4NA 2PYGA 4XLEA 1IA5A 1IDJA 1QCXA 1XG2A 4PMHA 4U4BA 3ZSCA 4OZYA 1O8IA 2NTQA 1O8LA 3VSTA 1IB4A 2X6WA 1HG8A 1OGOX 2NSPA 1O8EA 2INVA 4OZZA 4YELA 2BSPA 1KCCA 4EW9A 2NZMA 2NT9A 3JURA 1VBLA 2UVFA 3GQ8A 4XNFA 3VSVA 2X6XA 4W8SA 3GRHA 2NSTA 5C1EA 1OGMX 4YZAA 4W8RA 1AIRA 4MXNA 4OJOA 4XLHA 4XN3A 4YEJA 2VBEA 1X0CA 4XQFA 4XONA 1O8JA 5AMVA 4XMYA 2VJJA 1BHEA 1CZFA 4HWVA 4XOTA 2NT6A 2QX3A 1O8MA 4YZQA 4AVZA 3KRGA 1JTAA 4XL9A 4C2LA 4Z05A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OFM A;  4U49 A;  1BN8 A;  2Z8G A;  1RU4 A;  1KTW A;  2O0V A;  1IDK A;  4XR6 A;  1KCD A;  2QY1 A;  1H80 A;  1OOC A;  1NHC A;  1RWR A;  2IQ7 A;  2O17 A;  2NTP A;  1WMR A;  3EQN A;  4NK8 A;  4XKW A;  4XLC A;  1O8H A;  3LMW A;  1OFL A;  2O04 A;  4I84 A;  4XN0 A;  1QJV A;  1DBG A;  4XM3 A;  4XLA A;  2INU A;  4W8T A;  1O8D A;  2VBK A;  3EQO A;  4YZ0 A;  3GQ9 A;  4OJP A;  4XOR A;  3B90 A;  3VMW A;  4XKV A;  4OJL A;  4OJ5 A;  4MR0 A;  2PEC A;  4Z06 A;  1O8F A;  1PE9 A;  3GQA A;  4URR A;  1K5C A;  3VSU A;  4Z03 A;  4W8Q A;  1PLU A;  4XLF A;  1GQ8 A;  2PYH A;  2ODL A;  3FY3 A;  4YZX A;  3UW0 A;  4NK6 A;  2VJI A;  3WWG A;  3VMV A;  2UVE A;  1JRG A;  4XOP A;  2O1D A;  3ZPP A;  2X85 A;  2X3H A;  1O88 A;  1RMG A;  3T9G A;  4OJ6 A;  2X6Y A;  1EE6 A;  3SUC A;  2EWE A;  2VBM A;  1DBO A;  2O0W A;  1O8G A;  3GQ7 A;  2NTB A;  5C1C A;  1PXZ A;  3B8Y A;  1O8K A;  2QXZ A;  3B4N A;  2PYG A;  4XLE A;  1IA5 A;  1IDJ A;  1QCX A;  1XG2 A;  4PMH A;  4U4B A;  3ZSC A;  4OZY A;  1O8I A;  2NTQ A;  1O8L A;  3VST A;  1IB4 A;  2X6W A;  1HG8 A;  1OGO X;  2NSP A;  1O8E A;  2INV A;  4OZZ A;  4YEL A;  2BSP A;  1KCC A;  4EW9 A;  2NZM A;  2NT9 A;  3JUR A;  1VBL A;  2UVF A;  3GQ8 A;  4XNF A;  3VSV A;  2X6X A;  4W8S A;  3GRH A;  2NST A;  5C1E A;  1OGM X;  4YZA A;  4W8R A;  1AIR A;  4MXN A;  4OJO A;  4XLH A;  4XN3 A;  4YEJ A;  2VBE A;  1X0C A;  4XQF A;  4XON A;  1O8J A;  5AMV A;  4XMY A;  2VJJ A;  1BHE A;  1CZF A;  4HWV A;  4XOT A;  2NT6 A;  2QX3 A;  1O8M A;  4YZQ A;  4AVZ A;  3KRG A;  1JTA A;  4XL9 A;  4C2L A;  4Z05 A; 
#chains in the Genus database with same CATH topology
 1OFM A;  2V5I A;  1BN8 A;  2Z8G A;  4U49 A;  4YDT A;  1RU4 A;  1KTW A;  2O0V A;  1CLW A;  1IDK A;  4XR6 A;  2YUH A;  3H09 A;  2QY1 A;  1KCD A;  2XT4 A;  1H80 A;  3N6Z A;  4JRA C;  1OOC A;  1NHC A;  2W7Z A;  1KQ5 A;  1RWR A;  2IQ7 A;  3N90 A;  2O17 A;  2NTP A;  5JMC B;  1WMR A;  3EQN A;  2VFQ A;  1QRB A;  2B0R A;  1WXR A;  2QYU A;  4NK8 A;  4XKW A;  4XLC A;  1LLW A;  1O8H A;  3LMW A;  1OFL A;  3LYC A;  3PET A;  2O04 A;  3BH7 B;  4I84 A;  4XN0 A;  1QJV A;  1DBG A;  4XM3 A;  4XLA A;  2INU A;  4W8T A;  1O8D A;  2VBK A;  3EQO A;  4YZ0 A;  4OM9 A;  3GQ9 A;  4OJP A;  4XOR A;  3B90 A;  2IOU G;  3VMW A;  4XKV A;  4OJL A;  4OJ5 A;  4MR0 A;  3TH0 A;  1L1I A;  2PEC A;  4Z06 A;  1O8F A;  1PE9 A;  3GQA A;  4URR A;  2XTY A;  4YC5 A;  3VSU A;  1K5C A;  2VFO A;  2G0Y A;  4W8Q A;  4Z03 A;  1OFD A;  1PLU A;  4XLF A;  1GQ8 A;  2PYH A;  2ODL A;  2O6W A;  3FY3 A;  4YZX A;  2BM6 A;  3SYJ A;  1TSP A;  5DNS A;  3ML3 A;  4NK6 A;  2VJI A;  3UW0 A;  3SZE A;  3WWG A;  2XTX A;  1QA1 A;  1HF2 A;  3BH6 B;  3VMV A;  2UVE A;  1JRG A;  4OPW A;  1QA3 A;  4XOP A;  2O1D A;  3ZPP A;  2X85 A;  2X3H A;  5JLV C;  1O88 A;  1RMG A;  3T9G A;  4OJ6 A;  2XTW A;  2X6Y A;  1EE6 A;  3SUC A;  2EWE A;  2VBM A;  1DBO A;  2O0W A;  1O8G A;  1TYU A;  2F3L A;  3GQ7 A;  3RIQ A;  2NTB A;  2J8K A;  5C1C A;  1PXZ A;  3B8Y A;  1O8K A;  2QXZ A;  3B4N A;  2PYG A;  1QRC A;  4XLE A;  3SY2 A;  1IA5 A;  1K4Z A;  1IDJ A;  1QCX A;  1TYX A;  1XG2 A;  2VFP A;  4PMH A;  2BX6 A;  4U4B A;  3ZSC A;  4OZY A;  1O8I A;  2NTQ A;  1DAB A;  1O8L A;  3VST A;  1IB4 A;  2X6W A;  1HG8 A;  3P4G A;  1OGO X;  2NSP A;  1O8E A;  2INV A;  2QZA A;  4KH3 A;  4OZZ A;  4YEL A;  2VFN A;  4YEI A;  3AK5 A;  2BSP A;  1KCC A;  4YCQ A;  4EW9 A;  1QQ1 A;  2NZM A;  3JX8 A;  2BM5 A;  2NT9 A;  3JUR A;  1VBL A;  1QA2 A;  2UVF A;  3GQ8 A;  4XNF A;  2XC1 A;  3VSV A;  2X6X A;  4W8S A;  3GRH A;  2NST A;  5C1E A;  1OGM X;  1OFE A;  4V02 C;  4YZA A;  2BM7 A;  1AIR A;  4MXN A;  4W8R A;  4OJO A;  4XLH A;  3PSZ A;  4XN3 A;  4YEJ A;  2VBE A;  1X0C A;  4XQF A;  3NAW A;  1LLZ A;  4XON A;  1EA0 A;  1O8J A;  5AMV A;  1K8F A;  4XMY A;  2VJJ A;  1BHE A;  1CZF A;  4HWV A;  3SQV A;  1LM1 A;  3DU1 X;  4XOT A;  2NT6 A;  3NB2 A;  2QX3 A;  3LJY A;  1O8M A;  2VFM A;  4YZQ A;  4AVZ A;  1TYV A;  1EZG A;  3KRG A;  3PSS A;  1JTA A;  2BM4 A;  2J8I A;  4XL9 A;  2XT2 A;  4C2L A;  1TYW A;  4Z05 A;  4YFO A; 
#chains in the Genus database with same CATH homology
 1OFM A;  4U49 A;  1BN8 A;  2Z8G A;  1RU4 A;  1KTW A;  2O0V A;  1IDK A;  4XR6 A;  1KCD A;  2QY1 A;  1H80 A;  1OOC A;  1NHC A;  1RWR A;  2IQ7 A;  2O17 A;  2NTP A;  1WMR A;  3EQN A;  4NK8 A;  4XKW A;  4XLC A;  1O8H A;  3LMW A;  1OFL A;  2O04 A;  4I84 A;  4XN0 A;  1QJV A;  1DBG A;  4XM3 A;  4XLA A;  2INU A;  4W8T A;  1O8D A;  2VBK A;  3EQO A;  4YZ0 A;  3GQ9 A;  4OJP A;  4XOR A;  3B90 A;  3VMW A;  4XKV A;  4OJL A;  4OJ5 A;  4MR0 A;  2PEC A;  4Z06 A;  1O8F A;  1PE9 A;  3GQA A;  4URR A;  1K5C A;  3VSU A;  4Z03 A;  4W8Q A;  1PLU A;  4XLF A;  1GQ8 A;  2PYH A;  2ODL A;  3FY3 A;  4YZX A;  3UW0 A;  4NK6 A;  2VJI A;  3WWG A;  3VMV A;  2UVE A;  1JRG A;  4XOP A;  2O1D A;  3ZPP A;  2X85 A;  2X3H A;  1O88 A;  1RMG A;  3T9G A;  4OJ6 A;  2X6Y A;  1EE6 A;  3SUC A;  2EWE A;  2VBM A;  1DBO A;  2O0W A;  1O8G A;  3GQ7 A;  2NTB A;  5C1C A;  1PXZ A;  3B8Y A;  1O8K A;  2QXZ A;  3B4N A;  2PYG A;  4XLE A;  1IA5 A;  1IDJ A;  1QCX A;  1XG2 A;  4PMH A;  4U4B A;  3ZSC A;  4OZY A;  1O8I A;  2NTQ A;  1O8L A;  3VST A;  1IB4 A;  2X6W A;  1HG8 A;  1OGO X;  2NSP A;  1O8E A;  2INV A;  4OZZ A;  4YEL A;  2BSP A;  1KCC A;  4EW9 A;  2NZM A;  2NT9 A;  3JUR A;  1VBL A;  2UVF A;  3GQ8 A;  4XNF A;  3VSV A;  2X6X A;  4W8S A;  3GRH A;  2NST A;  5C1E A;  1OGM X;  4YZA A;  4W8R A;  1AIR A;  4MXN A;  4OJO A;  4XLH A;  4XN3 A;  4YEJ A;  2VBE A;  1X0C A;  4XQF A;  4XON A;  1O8J A;  5AMV A;  4XMY A;  2VJJ A;  1BHE A;  1CZF A;  4HWV A;  4XOT A;  2NT6 A;  2QX3 A;  1O8M A;  4YZQ A;  4AVZ A;  3KRG A;  1JTA A;  4XL9 A;  4C2L A;  4Z05 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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