1QCXA

Pectin lyase b
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
359
structure length
359
Chain Sequence
AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSGSMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
publication title The tree-dimensional structure of aspergillus niger pectin lyase B at 1.7-A resolution.
pubmed doi rcsb
molecule keywords PECTIN LYASE B
total genus 137
structure length 359
sequence length 359
ec nomenclature ec 4.2.2.10: Pectin lyase.
pdb deposition date 1999-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1qcxA00
4Z03A 2Z8GA 1IB4A 2PYGA 4W8QA 1GQ8A 1O8JA 1O8MA 2VJJA 3VMWA 1PE9A 2IQ7A 4EW9A 1IDKA 2UVFA 1JRGA 2PYHA 1BN8A 2O0WA 1NHCA 4OZZA 1AIRA 1PXZA 4I84A 4XN0A 3B4NA 2O1DA 1O8KA 4U49A 2O0VA 3FY3A 2VBKA 4YELA 4C2LA 1KCDA 1QJVA 4MXNA 2VBMA 4W8TA 2X85A 4Z06A 1KCCA 1O8HA 4XL9A 4MR0A 4XKWA 1CZFA 3GQAA 4AVZA 1HG8A 4XLEA 2X6XA 1DBOA 3ZSCA 3SUCA 2UVEA 1O88A 1OFLA 3VSUA 2NTPA 2QX3A 1RWRA 2PECA 1RMGA 4XORA 4U4BA 3WWGA 3JURA 1O8IA 4XQFA 1O8FA 2QXZA 2VJIA 1EE6A 4YZQA 1IA5A 3VSTA 1K5CA 2INVA 4XKVA 2BSPA 5AMVA 4NK8A 2NT9A 2X6YA 1OGMX 4XMYA 1OOCA 4OJ5A 1KTWA 2O04A 1VBLA 2NTBA 3GQ8A 2QY1A 2NZMA 3EQOA 3KRGA 4HWVA 1PLUA 2ODLA 1OGOX 4XLAA 4W8RA 4XOTA 1O8DA 3GRHA 3ZPPA 1JTAA 4YEJA 5C1EA 2NSPA 2INUA 4W8SA 1WMRA 1O8EA 4OJ6A 4Z05A 3GQ7A 4OJPA 4YZAA 2X3HA 1XG2A 1O8GA 4OJLA 2O17A 3B8YA 3UW0A 4PMHA 2EWEA 2NTQA 4YZ0A 4XLFA 2NT6A 4XM3A 4XLCA 4XONA 3B90A 1X0CA 1H80A 2VBEA 3VMVA 1QCXA 2NSTA 4XR6A 4URRA 3EQNA 4OZYA 1OFMA 3VSVA 4XNFA 1BHEA 1RU4A 2X6WA 4YZXA 4XN3A 1IDJA 4NK6A 4OJOA 4XLHA 1DBGA 1O8LA 3GQ9A 5C1CA 3T9GA 4XOPA 3LMWA
chains in the Genus database with same CATH superfamily
4Z03A 2Z8GA 1IB4A 1EA0A 2PYGA 4OM9A 4W8QA 1GQ8A 1O8JA 1O8MA 2VJJA 2XT4A 1PE9A 2IQ7A 3VMWA 1K8FA 4EW9A 1IDKA 2UVFA 1JRGA 2PYHA 1BN8A 1TYWA 2O0WA 1NHCA 4OZZA 2XTWA 1AIRA 3LJYA 1PXZA 1QA1A 4I84A 4XN0A 3RIQA 1KQ5A 2W7ZA 2VFMA 3B4NA 2O1DA 2QYUA 2XTYA 4YC5A 1O8KA 4U49A 2O0VA 3NAWA 3FY3A 2VBKA 4YELA 3DU1X 4C2LA 1QJVA 4MXNA 1DABA 2VBMA 4W8TA 2X85A 4Z06A 1KCCA 1O8HA 1LLWA 4XL9A 5JMCB 2VFNA 4MR0A 1TSPA 1K4ZA 4XKWA 3H09A 2VFQA 1CZFA 3GQAA 3BH6B 3N6ZA 3LYCA 4AVZA 1HG8A 2BM4A 4XLEA 1LM1A 2X6XA 2B0RA 1DBOA 1QQ1A 2VFOA 3PETA 2YUHA 2J8KA 1HF2A 2V5IA 3BH7B 3ZSCA 3N90A 2BX6A 3SUCA 4YFOA 1QRBA 2BM7A 2QZAA 1L1IA 2UVEA 1O88A 1TYUA 1OFLA 5JLVC 1LLZA 3VSUA 2NTPA 2QX3A 1RWRA 2PECA 3NB2A 1RMGA 4XORA 4U4BA 3WWGA 3JURA 1O8IA 4XQFA 1O8FA 2XT2A 2QXZA 2VJIA 1EE6A 4YZQA 1IA5A 1OFEA 3VSTA 1K5CA 2INVA 4XKVA 2BSPA 2XTXA 5AMVA 4NK8A 2NT9A 2X6YA 1OGMX 3PSZA 1OOCA 4KH3A 4OJ5A 4XMYA 1KTWA 1QRCA 4YCQA 2O04A 1VBLA 2NTBA 3GQ8A 4V02C 2QY1A 1OFDA 2NZMA 3EQOA 3KRGA 4JRAC 1QA2A 3SY2A 2BM6A 3PSSA 4HWVA 3TH0A 1PLUA 2ODLA 1OGOX 4XLAA 4W8RA 4XOTA 3SYJA 1QA3A 1TYXA 1O8DA 1TYVA 3GRHA 3ZPPA 1JTAA 4YEJA 5C1EA 4YEIA 2NSPA 2INUA 3AK5A 3JX8A 1EZGA 4W8SA 1WMRA 2F3LA 1O8EA 4OPWA 4OJ6A 4Z05A 3GQ7A 4OJPA 2O6WA 4YZAA 2X3HA 1XG2A 1O8GA 4OJLA 2O17A 3B8YA 2J8IA 3SQVA 3UW0A 4PMHA 3SZEA 2EWEA 2NTQA 4YZ0A 4XLFA 1KCDA 2NT6A 4XM3A 4XLCA 4XONA 3B90A 5DNSA 1X0CA 2VFPA 1H80A 2IOUG 2VBEA 3VMVA 1QCXA 2NSTA 4XR6A 4URRA 3EQNA 4OZYA 1OFMA 3VSVA 4YDTA 4XNFA 1BHEA 1RU4A 2X6WA 3ML3A 3P4GA 4YZXA 4XN3A 1CLWA 1IDJA 2G0YA 4NK6A 1WXRA 2BM5A 2XC1A 1DBGA 1O8LA 3GQ9A 4OJOA 4XLHA 5C1CA 3T9GA 4XOPA 3LMWA
chains in the Genus database with same CATH topology
4Z03A 2Z8GA 1IB4A 2PYGA 4W8QA 1GQ8A 1O8JA 1O8MA 2VJJA 3VMWA 1PE9A 2IQ7A 4EW9A 1IDKA 2UVFA 1JRGA 2PYHA 1BN8A 2O0WA 1NHCA 4OZZA 1AIRA 1PXZA 4I84A 4XN0A 3B4NA 2O1DA 1O8KA 4U49A 2O0VA 3FY3A 2VBKA 4YELA 4C2LA 1KCDA 1QJVA 4MXNA 2VBMA 4W8TA 2X85A 4Z06A 1KCCA 1O8HA 4XL9A 4MR0A 4XKWA 1CZFA 3GQAA 4AVZA 1HG8A 4XLEA 2X6XA 1DBOA 3ZSCA 3SUCA 2UVEA 1O88A 1OFLA 3VSUA 2NTPA 2QX3A 1RWRA 2PECA 1RMGA 4XORA 4U4BA 3WWGA 3JURA 1O8IA 4XQFA 1O8FA 2QXZA 2VJIA 1EE6A 4YZQA 1IA5A 3VSTA 1K5CA 2INVA 4XKVA 2BSPA 5AMVA 4NK8A 2NT9A 2X6YA 1OGMX 4XMYA 1OOCA 4OJ5A 1KTWA 2O04A 1VBLA 2NTBA 3GQ8A 2QY1A 2NZMA 3EQOA 3KRGA 4HWVA 1PLUA 2ODLA 1OGOX 4XLAA 4W8RA 4XOTA 1O8DA 3GRHA 3ZPPA 1JTAA 4YEJA 5C1EA 2NSPA 2INUA 4W8SA 1WMRA 1O8EA 4OJ6A 4Z05A 3GQ7A 4OJPA 4YZAA 2X3HA 1XG2A 1O8GA 4OJLA 2O17A 3B8YA 3UW0A 4PMHA 2EWEA 2NTQA 4YZ0A 4XLFA 2NT6A 4XM3A 4XLCA 4XONA 3B90A 1X0CA 1H80A 2VBEA 3VMVA 1QCXA 2NSTA 4XR6A 4URRA 3EQNA 4OZYA 1OFMA 3VSVA 4XNFA 1BHEA 1RU4A 2X6WA 4YZXA 4XN3A 1IDJA 4NK6A 4OJOA 4XLHA 1DBGA 1O8LA 3GQ9A 5C1CA 3T9GA 4XOPA 3LMWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z03 A;  2Z8G A;  1IB4 A;  2PYG A;  4W8Q A;  1GQ8 A;  1O8J A;  1O8M A;  2VJJ A;  3VMW A;  1PE9 A;  2IQ7 A;  4EW9 A;  1IDK A;  2UVF A;  1JRG A;  2PYH A;  1BN8 A;  2O0W A;  1NHC A;  4OZZ A;  1AIR A;  1PXZ A;  4I84 A;  4XN0 A;  3B4N A;  2O1D A;  1O8K A;  4U49 A;  2O0V A;  3FY3 A;  2VBK A;  4YEL A;  4C2L A;  1KCD A;  1QJV A;  4MXN A;  2VBM A;  4W8T A;  2X85 A;  4Z06 A;  1KCC A;  1O8H A;  4XL9 A;  4MR0 A;  4XKW A;  1CZF A;  3GQA A;  4AVZ A;  1HG8 A;  4XLE A;  2X6X A;  1DBO A;  3ZSC A;  3SUC A;  2UVE A;  1O88 A;  1OFL A;  3VSU A;  2NTP A;  2QX3 A;  1RWR A;  2PEC A;  1RMG A;  4XOR A;  4U4B A;  3WWG A;  3JUR A;  1O8I A;  4XQF A;  1O8F A;  2QXZ A;  2VJI A;  1EE6 A;  4YZQ A;  1IA5 A;  3VST A;  1K5C A;  2INV A;  4XKV A;  2BSP A;  5AMV A;  4NK8 A;  2NT9 A;  2X6Y A;  1OGM X;  4XMY A;  1OOC A;  4OJ5 A;  1KTW A;  2O04 A;  1VBL A;  2NTB A;  3GQ8 A;  2QY1 A;  2NZM A;  3EQO A;  3KRG A;  4HWV A;  1PLU A;  2ODL A;  1OGO X;  4XLA A;  4W8R A;  4XOT A;  1O8D A;  3GRH A;  3ZPP A;  1JTA A;  4YEJ A;  5C1E A;  2NSP A;  2INU A;  4W8S A;  1WMR A;  1O8E A;  4OJ6 A;  4Z05 A;  3GQ7 A;  4OJP A;  4YZA A;  2X3H A;  1XG2 A;  1O8G A;  4OJL A;  2O17 A;  3B8Y A;  3UW0 A;  4PMH A;  2EWE A;  2NTQ A;  4YZ0 A;  4XLF A;  2NT6 A;  4XM3 A;  4XLC A;  4XON A;  3B90 A;  1X0C A;  1H80 A;  2VBE A;  3VMV A;  1QCX A;  2NST A;  4XR6 A;  4URR A;  3EQN A;  4OZY A;  1OFM A;  3VSV A;  4XNF A;  1BHE A;  1RU4 A;  2X6W A;  4YZX A;  4XN3 A;  1IDJ A;  4NK6 A;  4OJO A;  4XLH A;  1DBG A;  1O8L A;  3GQ9 A;  5C1C A;  3T9G A;  4XOP A;  3LMW A; 
#chains in the Genus database with same CATH topology
 4Z03 A;  2Z8G A;  1IB4 A;  1EA0 A;  2PYG A;  4OM9 A;  4W8Q A;  1GQ8 A;  1O8J A;  1O8M A;  2VJJ A;  2XT4 A;  1PE9 A;  2IQ7 A;  3VMW A;  1K8F A;  4EW9 A;  1IDK A;  2UVF A;  1JRG A;  2PYH A;  1BN8 A;  1TYW A;  2O0W A;  1NHC A;  4OZZ A;  2XTW A;  1AIR A;  3LJY A;  1PXZ A;  1QA1 A;  4I84 A;  4XN0 A;  3RIQ A;  1KQ5 A;  2W7Z A;  2VFM A;  3B4N A;  2O1D A;  2QYU A;  2XTY A;  4YC5 A;  1O8K A;  4U49 A;  2O0V A;  3NAW A;  3FY3 A;  2VBK A;  4YEL A;  3DU1 X;  4C2L A;  1QJV A;  4MXN A;  1DAB A;  2VBM A;  4W8T A;  2X85 A;  4Z06 A;  1KCC A;  1O8H A;  1LLW A;  4XL9 A;  5JMC B;  2VFN A;  4MR0 A;  1TSP A;  1K4Z A;  4XKW A;  3H09 A;  2VFQ A;  1CZF A;  3GQA A;  3BH6 B;  3N6Z A;  3LYC A;  4AVZ A;  1HG8 A;  2BM4 A;  4XLE A;  1LM1 A;  2X6X A;  2B0R A;  1DBO A;  1QQ1 A;  2VFO A;  3PET A;  2YUH A;  2J8K A;  1HF2 A;  2V5I A;  3BH7 B;  3ZSC A;  3N90 A;  2BX6 A;  3SUC A;  4YFO A;  1QRB A;  2BM7 A;  2QZA A;  1L1I A;  2UVE A;  1O88 A;  1TYU A;  1OFL A;  5JLV C;  1LLZ A;  3VSU A;  2NTP A;  2QX3 A;  1RWR A;  2PEC A;  3NB2 A;  1RMG A;  4XOR A;  4U4B A;  3WWG A;  3JUR A;  1O8I A;  4XQF A;  1O8F A;  2XT2 A;  2QXZ A;  2VJI A;  1EE6 A;  4YZQ A;  1IA5 A;  1OFE A;  3VST A;  1K5C A;  2INV A;  4XKV A;  2BSP A;  2XTX A;  5AMV A;  4NK8 A;  2NT9 A;  2X6Y A;  1OGM X;  3PSZ A;  1OOC A;  4KH3 A;  4OJ5 A;  4XMY A;  1KTW A;  1QRC A;  4YCQ A;  2O04 A;  1VBL A;  2NTB A;  3GQ8 A;  4V02 C;  2QY1 A;  1OFD A;  2NZM A;  3EQO A;  3KRG A;  4JRA C;  1QA2 A;  3SY2 A;  2BM6 A;  3PSS A;  4HWV A;  3TH0 A;  1PLU A;  2ODL A;  1OGO X;  4XLA A;  4W8R A;  4XOT A;  3SYJ A;  1QA3 A;  1TYX A;  1O8D A;  1TYV A;  3GRH A;  3ZPP A;  1JTA A;  4YEJ A;  5C1E A;  4YEI A;  2NSP A;  2INU A;  3AK5 A;  3JX8 A;  1EZG A;  4W8S A;  1WMR A;  2F3L A;  1O8E A;  4OPW A;  4OJ6 A;  4Z05 A;  3GQ7 A;  4OJP A;  2O6W A;  4YZA A;  2X3H A;  1XG2 A;  1O8G A;  4OJL A;  2O17 A;  3B8Y A;  2J8I A;  3SQV A;  3UW0 A;  4PMH A;  3SZE A;  2EWE A;  2NTQ A;  4YZ0 A;  4XLF A;  1KCD A;  2NT6 A;  4XM3 A;  4XLC A;  4XON A;  3B90 A;  5DNS A;  1X0C A;  2VFP A;  1H80 A;  2IOU G;  2VBE A;  3VMV A;  1QCX A;  2NST A;  4XR6 A;  4URR A;  3EQN A;  4OZY A;  1OFM A;  3VSV A;  4YDT A;  4XNF A;  1BHE A;  1RU4 A;  2X6W A;  3ML3 A;  3P4G A;  4YZX A;  4XN3 A;  1CLW A;  1IDJ A;  2G0Y A;  4NK6 A;  1WXR A;  2BM5 A;  2XC1 A;  1DBG A;  1O8L A;  3GQ9 A;  4OJO A;  4XLH A;  5C1C A;  3T9G A;  4XOP A;  3LMW A; 
#chains in the Genus database with same CATH homology
 4Z03 A;  2Z8G A;  1IB4 A;  2PYG A;  4W8Q A;  1GQ8 A;  1O8J A;  1O8M A;  2VJJ A;  3VMW A;  1PE9 A;  2IQ7 A;  4EW9 A;  1IDK A;  2UVF A;  1JRG A;  2PYH A;  1BN8 A;  2O0W A;  1NHC A;  4OZZ A;  1AIR A;  1PXZ A;  4I84 A;  4XN0 A;  3B4N A;  2O1D A;  1O8K A;  4U49 A;  2O0V A;  3FY3 A;  2VBK A;  4YEL A;  4C2L A;  1KCD A;  1QJV A;  4MXN A;  2VBM A;  4W8T A;  2X85 A;  4Z06 A;  1KCC A;  1O8H A;  4XL9 A;  4MR0 A;  4XKW A;  1CZF A;  3GQA A;  4AVZ A;  1HG8 A;  4XLE A;  2X6X A;  1DBO A;  3ZSC A;  3SUC A;  2UVE A;  1O88 A;  1OFL A;  3VSU A;  2NTP A;  2QX3 A;  1RWR A;  2PEC A;  1RMG A;  4XOR A;  4U4B A;  3WWG A;  3JUR A;  1O8I A;  4XQF A;  1O8F A;  2QXZ A;  2VJI A;  1EE6 A;  4YZQ A;  1IA5 A;  3VST A;  1K5C A;  2INV A;  4XKV A;  2BSP A;  5AMV A;  4NK8 A;  2NT9 A;  2X6Y A;  1OGM X;  4XMY A;  1OOC A;  4OJ5 A;  1KTW A;  2O04 A;  1VBL A;  2NTB A;  3GQ8 A;  2QY1 A;  2NZM A;  3EQO A;  3KRG A;  4HWV A;  1PLU A;  2ODL A;  1OGO X;  4XLA A;  4W8R A;  4XOT A;  1O8D A;  3GRH A;  3ZPP A;  1JTA A;  4YEJ A;  5C1E A;  2NSP A;  2INU A;  4W8S A;  1WMR A;  1O8E A;  4OJ6 A;  4Z05 A;  3GQ7 A;  4OJP A;  4YZA A;  2X3H A;  1XG2 A;  1O8G A;  4OJL A;  2O17 A;  3B8Y A;  3UW0 A;  4PMH A;  2EWE A;  2NTQ A;  4YZ0 A;  4XLF A;  2NT6 A;  4XM3 A;  4XLC A;  4XON A;  3B90 A;  1X0C A;  1H80 A;  2VBE A;  3VMV A;  1QCX A;  2NST A;  4XR6 A;  4URR A;  3EQN A;  4OZY A;  1OFM A;  3VSV A;  4XNF A;  1BHE A;  1RU4 A;  2X6W A;  4YZX A;  4XN3 A;  1IDJ A;  4NK6 A;  4OJO A;  4XLH A;  1DBG A;  1O8L A;  3GQ9 A;  5C1C A;  3T9G A;  4XOP A;  3LMW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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