1O8JA

Pectate lyase c from erwinia chrysanthemi at ph 4.5 with 30mm ca2+
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
352
structure length
352
Chain Sequence
ATDTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKLPGYAGVGKNLATLTSTAC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Erwinia chrysanthemi
publication title Characterization and Implications of Ca2+ Binding to Pectate Lyase C
pubmed doi rcsb
molecule keywords PECTATE LYASE C
total genus 137
structure length 352
sequence length 352
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2002-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1o8jA00
1K5CA 1PE9A 2EWEA 4YZAA 2NTBA 2UVFA 2VBKA 3VSUA 2X3HA 4XMYA 2VBEA 1NHCA 4OZYA 3ZPPA 4XORA 5C1CA 1RWRA 1HG8A 4XN3A 3GQ7A 1JTAA 4NK6A 2VJJA 4XOPA 3VMVA 4W8QA 1AIRA 3SUCA 1QCXA 2VBMA 3UW0A 4XM3A 4OJLA 1OOCA 1XG2A 2PYGA 3KRGA 1DBGA 1OGOX 2X6WA 4HWVA 3VSTA 1OGMX 1IDKA 2O1DA 2Z8GA 4NK8A 1KCCA 4C2LA 3GQ9A 1RU4A 4Z05A 2O17A 1OFLA 1BN8A 4YEJA 5AMVA 1O8LA 2NSTA 1O8DA 4W8RA 2IQ7A 4I84A 4YELA 4U49A 2X6YA 1JRGA 4XQFA 2NT6A 1O8MA 1O8HA 2INVA 1O8KA 4W8SA 2QX3A 3FY3A 3T9GA 4MXNA 2UVEA 3B4NA 3GRHA 3LMWA 4XLAA 4XOTA 1IDJA 2X85A 4YZXA 1O8JA 3GQAA 3EQNA 1BHEA 1H80A 2BSPA 3B90A 4OJ6A 5C1EA 4Z06A 4XLFA 1OFMA 1O8EA 4XNFA 2VJIA 4XKVA 4XL9A 1DBOA 1X0CA 4MR0A 4XLHA 3ZSCA 4YZQA 1O8FA 1WMRA 4YZ0A 4XN0A 1IA5A 1KTWA 1QJVA 3EQOA 2NSPA 4XKWA 2NZMA 3VMWA 1KCDA 1O8IA 2INUA 3JURA 4Z03A 4OJOA 1GQ8A 1O8GA 2O04A 4OJ5A 1O88A 4EW9A 2NTPA 2QXZA 1EE6A 4URRA 1PXZA 4OJPA 4AVZA 2PECA 4XONA 4U4BA 2O0WA 4PMHA 1VBLA 4W8TA 2QY1A 2NTQA 3WWGA 2NT9A 3B8YA 1CZFA 4XR6A 2ODLA 1IB4A 4XLEA 2PYHA 1PLUA 4OZZA 3GQ8A 3VSVA 2O0VA 4XLCA 1RMGA 2X6XA
chains in the Genus database with same CATH superfamily
1K5CA 1PE9A 2EWEA 4YZAA 3H09A 3ML3A 2NTBA 2UVFA 2VBKA 3BH6B 2BM6A 3VSUA 2X3HA 4XMYA 2VBEA 2G0YA 1NHCA 4OZYA 3ZPPA 4XORA 5C1CA 2BM4A 4V02C 1RWRA 1HG8A 1TYXA 4XN3A 3GQ7A 1JTAA 2QYUA 3N90A 3TH0A 1L1IA 4NK6A 2VJJA 1TYWA 2V5IA 4XOPA 3VMVA 4W8QA 1AIRA 2J8IA 3SUCA 1QCXA 2VBMA 3UW0A 4XM3A 3DU1X 4OJLA 1OOCA 1XG2A 2PYGA 3KRGA 4OPWA 1DBGA 1OGOX 2X6WA 4HWVA 3VSTA 1OGMX 1IDKA 2O1DA 2Z8GA 4NK8A 1KCCA 3P4GA 4C2LA 3GQ9A 1RU4A 4Z05A 3SQVA 2O17A 1OFLA 1OFEA 1BN8A 4YEJA 5AMVA 1QRBA 2F3LA 2O6WA 1O8LA 2NSTA 1O8DA 4W8RA 2IQ7A 3PSZA 3LJYA 4I84A 2X6YA 4U49A 4YELA 1JRGA 2XC1A 1LM1A 2NT6A 4XQFA 1O8MA 1O8HA 3LYCA 2INVA 1LLZA 1K8FA 1O8KA 1QRCA 2QX3A 3FY3A 4W8SA 3SY2A 3T9GA 4MXNA 2UVEA 4YCQA 3B4NA 3GRHA 3LMWA 4XLAA 4XOTA 2BM5A 5JMCB 1IDJA 2X85A 4YZXA 1O8JA 3GQAA 2IOUG 3EQNA 5DNSA 1BHEA 4YDTA 2VFQA 4YEIA 1H80A 2BSPA 3B90A 4OJ6A 3SZEA 5C1EA 4Z06A 4XLFA 2W7ZA 1OFMA 1O8EA 4XNFA 1CLWA 1K4ZA 1OFDA 2VJIA 4XKVA 4XL9A 1DBOA 1X0CA 1TYUA 4MR0A 4XLHA 3ZSCA 4JRAC 4YZQA 1KQ5A 1O8FA 1WMRA 2VFNA 4YZ0A 3N6ZA 3PSSA 4XN0A 1KTWA 1QJVA 3EQOA 2NSPA 4XKWA 2NZMA 3JX8A 2VFMA 1IA5A 3VMWA 1KCDA 3BH7B 1O8IA 2INUA 3JURA 1QA3A 5JLVC 4Z03A 1EZGA 2QZAA 2XTWA 1LLWA 4OJOA 1TSPA 1GQ8A 1O8GA 2VFOA 2O04A 4YFOA 4OJ5A 1O88A 4EW9A 2NTPA 2QXZA 2VFPA 1EE6A 4URRA 1PXZA 3SYJA 4OJPA 4AVZA 1DABA 2PECA 4XONA 4U4BA 1WXRA 3NAWA 2O0WA 2XT4A 3AK5A 4PMHA 1VBLA 4W8TA 2QY1A 1QA1A 4KH3A 3RIQA 2XT2A 2NTQA 3WWGA 3NB2A 2NT9A 3B8YA 1CZFA 2BX6A 4OM9A 4XR6A 2ODLA 1IB4A 4XLEA 2YUHA 2PYHA 2J8KA 1QQ1A 1QA2A 1PLUA 2XTXA 1EA0A 4OZZA 2XTYA 1TYVA 3GQ8A 3PETA 3VSVA 2O0VA 4XLCA 1RMGA 4YC5A 1HF2A 2X6XA 2B0RA 2BM7A
chains in the Genus database with same CATH topology
1K5CA 1PE9A 2EWEA 4YZAA 2NTBA 2UVFA 2VBKA 3VSUA 2X3HA 4XMYA 2VBEA 1NHCA 4OZYA 3ZPPA 4XORA 5C1CA 1RWRA 1HG8A 4XN3A 3GQ7A 1JTAA 4NK6A 2VJJA 4XOPA 3VMVA 4W8QA 1AIRA 3SUCA 1QCXA 2VBMA 3UW0A 4XM3A 4OJLA 1OOCA 1XG2A 2PYGA 3KRGA 1DBGA 1OGOX 2X6WA 4HWVA 3VSTA 1OGMX 1IDKA 2O1DA 2Z8GA 4NK8A 1KCCA 4C2LA 3GQ9A 1RU4A 4Z05A 2O17A 1OFLA 1BN8A 4YEJA 5AMVA 1O8LA 2NSTA 1O8DA 4W8RA 2IQ7A 4I84A 4YELA 4U49A 2X6YA 1JRGA 4XQFA 2NT6A 1O8MA 1O8HA 2INVA 1O8KA 4W8SA 2QX3A 3FY3A 3T9GA 4MXNA 2UVEA 3B4NA 3GRHA 3LMWA 4XLAA 4XOTA 1IDJA 2X85A 4YZXA 1O8JA 3GQAA 3EQNA 1BHEA 1H80A 2BSPA 3B90A 4OJ6A 5C1EA 4Z06A 4XLFA 1OFMA 1O8EA 4XNFA 2VJIA 4XKVA 4XL9A 1DBOA 1X0CA 4MR0A 4XLHA 3ZSCA 4YZQA 1O8FA 1WMRA 4YZ0A 4XN0A 1IA5A 1KTWA 1QJVA 3EQOA 2NSPA 4XKWA 2NZMA 3VMWA 1KCDA 1O8IA 2INUA 3JURA 4Z03A 4OJOA 1GQ8A 1O8GA 2O04A 4OJ5A 1O88A 4EW9A 2NTPA 2QXZA 1EE6A 4URRA 1PXZA 4OJPA 4AVZA 2PECA 4XONA 4U4BA 2O0WA 4PMHA 1VBLA 4W8TA 2QY1A 2NTQA 3WWGA 2NT9A 3B8YA 1CZFA 4XR6A 2ODLA 1IB4A 4XLEA 2PYHA 1PLUA 4OZZA 3GQ8A 3VSVA 2O0VA 4XLCA 1RMGA 2X6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K5C A;  1PE9 A;  2EWE A;  4YZA A;  2NTB A;  2UVF A;  2VBK A;  3VSU A;  2X3H A;  4XMY A;  2VBE A;  1NHC A;  4OZY A;  3ZPP A;  4XOR A;  5C1C A;  1RWR A;  1HG8 A;  4XN3 A;  3GQ7 A;  1JTA A;  4NK6 A;  2VJJ A;  4XOP A;  3VMV A;  4W8Q A;  1AIR A;  3SUC A;  1QCX A;  2VBM A;  3UW0 A;  4XM3 A;  4OJL A;  1OOC A;  1XG2 A;  2PYG A;  3KRG A;  1DBG A;  1OGO X;  2X6W A;  4HWV A;  3VST A;  1OGM X;  1IDK A;  2O1D A;  2Z8G A;  4NK8 A;  1KCC A;  4C2L A;  3GQ9 A;  1RU4 A;  4Z05 A;  2O17 A;  1OFL A;  1BN8 A;  4YEJ A;  5AMV A;  1O8L A;  2NST A;  1O8D A;  4W8R A;  2IQ7 A;  4I84 A;  4YEL A;  4U49 A;  2X6Y A;  1JRG A;  4XQF A;  2NT6 A;  1O8M A;  1O8H A;  2INV A;  1O8K A;  4W8S A;  2QX3 A;  3FY3 A;  3T9G A;  4MXN A;  2UVE A;  3B4N A;  3GRH A;  3LMW A;  4XLA A;  4XOT A;  1IDJ A;  2X85 A;  4YZX A;  1O8J A;  3GQA A;  3EQN A;  1BHE A;  1H80 A;  2BSP A;  3B90 A;  4OJ6 A;  5C1E A;  4Z06 A;  4XLF A;  1OFM A;  1O8E A;  4XNF A;  2VJI A;  4XKV A;  4XL9 A;  1DBO A;  1X0C A;  4MR0 A;  4XLH A;  3ZSC A;  4YZQ A;  1O8F A;  1WMR A;  4YZ0 A;  4XN0 A;  1IA5 A;  1KTW A;  1QJV A;  3EQO A;  2NSP A;  4XKW A;  2NZM A;  3VMW A;  1KCD A;  1O8I A;  2INU A;  3JUR A;  4Z03 A;  4OJO A;  1GQ8 A;  1O8G A;  2O04 A;  4OJ5 A;  1O88 A;  4EW9 A;  2NTP A;  2QXZ A;  1EE6 A;  4URR A;  1PXZ A;  4OJP A;  4AVZ A;  2PEC A;  4XON A;  4U4B A;  2O0W A;  4PMH A;  1VBL A;  4W8T A;  2QY1 A;  2NTQ A;  3WWG A;  2NT9 A;  3B8Y A;  1CZF A;  4XR6 A;  2ODL A;  1IB4 A;  4XLE A;  2PYH A;  1PLU A;  4OZZ A;  3GQ8 A;  3VSV A;  2O0V A;  4XLC A;  1RMG A;  2X6X A; 
#chains in the Genus database with same CATH topology
 1K5C A;  1PE9 A;  2EWE A;  4YZA A;  3H09 A;  3ML3 A;  2NTB A;  2UVF A;  2VBK A;  3BH6 B;  2BM6 A;  3VSU A;  2X3H A;  4XMY A;  2VBE A;  2G0Y A;  1NHC A;  4OZY A;  3ZPP A;  4XOR A;  5C1C A;  2BM4 A;  4V02 C;  1RWR A;  1HG8 A;  1TYX A;  4XN3 A;  3GQ7 A;  1JTA A;  2QYU A;  3N90 A;  3TH0 A;  1L1I A;  4NK6 A;  2VJJ A;  1TYW A;  2V5I A;  4XOP A;  3VMV A;  4W8Q A;  1AIR A;  2J8I A;  3SUC A;  1QCX A;  2VBM A;  3UW0 A;  4XM3 A;  3DU1 X;  4OJL A;  1OOC A;  1XG2 A;  2PYG A;  3KRG A;  4OPW A;  1DBG A;  1OGO X;  2X6W A;  4HWV A;  3VST A;  1OGM X;  1IDK A;  2O1D A;  2Z8G A;  4NK8 A;  1KCC A;  3P4G A;  4C2L A;  3GQ9 A;  1RU4 A;  4Z05 A;  3SQV A;  2O17 A;  1OFL A;  1OFE A;  1BN8 A;  4YEJ A;  5AMV A;  1QRB A;  2F3L A;  2O6W A;  1O8L A;  2NST A;  1O8D A;  4W8R A;  2IQ7 A;  3PSZ A;  3LJY A;  4I84 A;  2X6Y A;  4U49 A;  4YEL A;  1JRG A;  2XC1 A;  1LM1 A;  2NT6 A;  4XQF A;  1O8M A;  1O8H A;  3LYC A;  2INV A;  1LLZ A;  1K8F A;  1O8K A;  1QRC A;  2QX3 A;  3FY3 A;  4W8S A;  3SY2 A;  3T9G A;  4MXN A;  2UVE A;  4YCQ A;  3B4N A;  3GRH A;  3LMW A;  4XLA A;  4XOT A;  2BM5 A;  5JMC B;  1IDJ A;  2X85 A;  4YZX A;  1O8J A;  3GQA A;  2IOU G;  3EQN A;  5DNS A;  1BHE A;  4YDT A;  2VFQ A;  4YEI A;  1H80 A;  2BSP A;  3B90 A;  4OJ6 A;  3SZE A;  5C1E A;  4Z06 A;  4XLF A;  2W7Z A;  1OFM A;  1O8E A;  4XNF A;  1CLW A;  1K4Z A;  1OFD A;  2VJI A;  4XKV A;  4XL9 A;  1DBO A;  1X0C A;  1TYU A;  4MR0 A;  4XLH A;  3ZSC A;  4JRA C;  4YZQ A;  1KQ5 A;  1O8F A;  1WMR A;  2VFN A;  4YZ0 A;  3N6Z A;  3PSS A;  4XN0 A;  1KTW A;  1QJV A;  3EQO A;  2NSP A;  4XKW A;  2NZM A;  3JX8 A;  2VFM A;  1IA5 A;  3VMW A;  1KCD A;  3BH7 B;  1O8I A;  2INU A;  3JUR A;  1QA3 A;  5JLV C;  4Z03 A;  1EZG A;  2QZA A;  2XTW A;  1LLW A;  4OJO A;  1TSP A;  1GQ8 A;  1O8G A;  2VFO A;  2O04 A;  4YFO A;  4OJ5 A;  1O88 A;  4EW9 A;  2NTP A;  2QXZ A;  2VFP A;  1EE6 A;  4URR A;  1PXZ A;  3SYJ A;  4OJP A;  4AVZ A;  1DAB A;  2PEC A;  4XON A;  4U4B A;  1WXR A;  3NAW A;  2O0W A;  2XT4 A;  3AK5 A;  4PMH A;  1VBL A;  4W8T A;  2QY1 A;  1QA1 A;  4KH3 A;  3RIQ A;  2XT2 A;  2NTQ A;  3WWG A;  3NB2 A;  2NT9 A;  3B8Y A;  1CZF A;  2BX6 A;  4OM9 A;  4XR6 A;  2ODL A;  1IB4 A;  4XLE A;  2YUH A;  2PYH A;  2J8K A;  1QQ1 A;  1QA2 A;  1PLU A;  2XTX A;  1EA0 A;  4OZZ A;  2XTY A;  1TYV A;  3GQ8 A;  3PET A;  3VSV A;  2O0V A;  4XLC A;  1RMG A;  4YC5 A;  1HF2 A;  2X6X A;  2B0R A;  2BM7 A; 
#chains in the Genus database with same CATH homology
 1K5C A;  1PE9 A;  2EWE A;  4YZA A;  2NTB A;  2UVF A;  2VBK A;  3VSU A;  2X3H A;  4XMY A;  2VBE A;  1NHC A;  4OZY A;  3ZPP A;  4XOR A;  5C1C A;  1RWR A;  1HG8 A;  4XN3 A;  3GQ7 A;  1JTA A;  4NK6 A;  2VJJ A;  4XOP A;  3VMV A;  4W8Q A;  1AIR A;  3SUC A;  1QCX A;  2VBM A;  3UW0 A;  4XM3 A;  4OJL A;  1OOC A;  1XG2 A;  2PYG A;  3KRG A;  1DBG A;  1OGO X;  2X6W A;  4HWV A;  3VST A;  1OGM X;  1IDK A;  2O1D A;  2Z8G A;  4NK8 A;  1KCC A;  4C2L A;  3GQ9 A;  1RU4 A;  4Z05 A;  2O17 A;  1OFL A;  1BN8 A;  4YEJ A;  5AMV A;  1O8L A;  2NST A;  1O8D A;  4W8R A;  2IQ7 A;  4I84 A;  4YEL A;  4U49 A;  2X6Y A;  1JRG A;  4XQF A;  2NT6 A;  1O8M A;  1O8H A;  2INV A;  1O8K A;  4W8S A;  2QX3 A;  3FY3 A;  3T9G A;  4MXN A;  2UVE A;  3B4N A;  3GRH A;  3LMW A;  4XLA A;  4XOT A;  1IDJ A;  2X85 A;  4YZX A;  1O8J A;  3GQA A;  3EQN A;  1BHE A;  1H80 A;  2BSP A;  3B90 A;  4OJ6 A;  5C1E A;  4Z06 A;  4XLF A;  1OFM A;  1O8E A;  4XNF A;  2VJI A;  4XKV A;  4XL9 A;  1DBO A;  1X0C A;  4MR0 A;  4XLH A;  3ZSC A;  4YZQ A;  1O8F A;  1WMR A;  4YZ0 A;  4XN0 A;  1IA5 A;  1KTW A;  1QJV A;  3EQO A;  2NSP A;  4XKW A;  2NZM A;  3VMW A;  1KCD A;  1O8I A;  2INU A;  3JUR A;  4Z03 A;  4OJO A;  1GQ8 A;  1O8G A;  2O04 A;  4OJ5 A;  1O88 A;  4EW9 A;  2NTP A;  2QXZ A;  1EE6 A;  4URR A;  1PXZ A;  4OJP A;  4AVZ A;  2PEC A;  4XON A;  4U4B A;  2O0W A;  4PMH A;  1VBL A;  4W8T A;  2QY1 A;  2NTQ A;  3WWG A;  2NT9 A;  3B8Y A;  1CZF A;  4XR6 A;  2ODL A;  1IB4 A;  4XLE A;  2PYH A;  1PLU A;  4OZZ A;  3GQ8 A;  3VSV A;  2O0V A;  4XLC A;  1RMG A;  2X6X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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