2VFQA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v450a
Total Genus 202
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
202
sequence length
556
structure length
556
Chain Sequence
DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYASNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords P22 TAILSPIKE PROTEIN,
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
total genus 202
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfqA00
3ML3A 1TYUA 1QA2A 1QRBA 1TYVA 2VFOA 2VFQA 2V5IA 2VFMA 3SZEA 4OM9A 3AK5A 1TYXA 2VFPA 4KH3A 3RIQA 1QA3A 1DABA 1QQ1A 1CLWA 2XC1A 1TYWA 1TSPA 3H09A 1WXRA 2IOUG 3TH0A 3SYJA 2VFNA 1QRCA 1QA1A
chains in the Genus database with same CATH superfamily
3VSUA 2X6XA 1EZGA 2J8KA 3N6ZA 1O8MA 2VBEA 4NK6A 1QRBA 1TYVA 4XL9A 2BM6A 3ZPPA 2VFOA 4OZZA 2BM5A 2VFQA 2G0YA 3JX8A 4OJ5A 3SUCA 4AVZA 4XKVA 4Z05A 3SZEA 2QX3A 2NZMA 1OFDA 1JRGA 4OM9A 3VMWA 4I84A 3VMVA 2NTQA 4XLFA 4XN0A 1O88A 1X0CA 1DBGA 3JURA 3N90A 4XOPA 5AMVA 2XC1A 1O8KA 4XLEA 4EW9A 1O8FA 1OFLA 2NSTA 2X6WA 1O8LA 4OJOA 4YEIA 1AIRA 4XOTA 3SYJA 2F3LA 1PE9A 3LYCA 4W8QA 4OJ6A 2UVEA 1WXRA 2INUA 4XQFA 4XONA 1VBLA 4YZQA 4YEJA 2O0VA 4C2LA 1O8JA 1IB4A 3ML3A 1PXZA 3UW0A 1EA0A 2O6WA 4W8TA 1QA2A 1O8DA 2QY1A 4XN3A 4W8SA 3LJYA 1O8IA 5C1CA 2XT4A 3GQ9A 2INVA 1K4ZA 2ODLA 3T9GA 3BH6B 2O04A 3VSVA 1TYXA 2IQ7A 4YDTA 3VSTA 1QA3A 4U4BA 2NTBA 4OJPA 2O0WA 2PECA 2UVFA 5DNSA 1KCDA 3DU1X 2PYGA 3EQNA 4OJLA 3WWGA 4YELA 2W7ZA 3EQOA 3B8YA 4MR0A 1EE6A 1IA5A 1NHCA 2X85A 4OZYA 3SQVA 1GQ8A 3TH0A 5JLVC 1PLUA 4U49A 1O8HA 1OGMX 4XLAA 3SY2A 2VFNA 1QA1A 4HWVA 1JTAA 1KQ5A 3KRGA 1QJVA 2XTXA 2XTWA 1LLWA 2YUHA 3LMWA 1HG8A 2J8IA 4JRAC 3NB2A 2Z8GA 4Z03A 1BHEA 1L1IA 3GQ8A 2B0RA 2XT2A 3PETA 3AK5A 3RIQA 2VFPA 1KCCA 2NT6A 3GRHA 1QQ1A 5C1EA 2O17A 1TYWA 1TSPA 3H09A 2X6YA 3GQAA 1O8EA 1OFEA 2VJIA 4V02C 4YZXA 3BH7B 4XORA 2BM7A 1CZFA 1QRCA 2BM4A 4NK8A 2QZAA 1TYUA 1OGOX 2X3HA 4XR6A 2BSPA 2VJJA 4OPWA 1BN8A 1IDKA 1QCXA 2NTPA 4URRA 4YCQA 1XG2A 4XNFA 3P4GA 1O8GA 4MXNA 2V5IA 2VBKA 1OOCA 2VFMA 3GQ7A 1K5CA 2O1DA 4XM3A 2QYUA 4KH3A 1IDJA 2VBMA 4YC5A 4PMHA 3B4NA 3ZSCA 1DBOA 4W8RA 1OFMA 1HF2A 5JMCB 1DABA 1H80A 2PYHA 1RMGA 1LM1A 2NSPA 2XTYA 4YFOA 1CLWA 2BX6A 4XLHA 3B90A 4XKWA 4XMYA 1RWRA 4XLCA 3PSZA 2EWEA 4Z06A 4YZ0A 3FY3A 1WMRA 2IOUG 3NAWA 2NT9A 1KTWA 3PSSA 4YZAA 1RU4A 2QXZA 1LLZA 1K8FA
chains in the Genus database with same CATH topology
2BM4A 1KQ5A 3ML3A 1TYUA 3N6ZA 1QA2A 1QRBA 1TYVA 2BM6A 4OPWA 2VFOA 2BM5A 2YUHA 2VFQA 2G0YA 3JX8A 3LJYA 3P4GA 2J8IA 2V5IA 4JRAC 2VFMA 4OJ5A 3SZEA 1K4ZA 4OM9A 2B0RA 3BH6B 3PETA 3AK5A 1TYXA 2VFPA 4KH3A 3RIQA 1QA3A 4OJPA 5JMCB 1HF2A 1DABA 1QQ1A 3N90A 1CLWA 2BX6A 2XC1A 4OJLA 1TYWA 1TSPA 3H09A 1WXRA 2W7ZA 4OJOA 2IOUG 3TH0A 5JLVC 3SYJA 4V02C 2F3LA 3BH7B 2BM7A 3LYCA 4OJ6A 2VFNA 1QRCA 1QA1A 1K8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ML3 A;  1TYU A;  1QA2 A;  1QRB A;  1TYV A;  2VFO A;  2VFQ A;  2V5I A;  2VFM A;  3SZE A;  4OM9 A;  3AK5 A;  1TYX A;  2VFP A;  4KH3 A;  3RIQ A;  1QA3 A;  1DAB A;  1QQ1 A;  1CLW A;  2XC1 A;  1TYW A;  1TSP A;  3H09 A;  1WXR A;  2IOU G;  3TH0 A;  3SYJ A;  2VFN A;  1QRC A;  1QA1 A; 
#chains in the Genus database with same CATH topology
 3VSU A;  2X6X A;  1EZG A;  2J8K A;  3N6Z A;  1O8M A;  2VBE A;  4NK6 A;  1QRB A;  1TYV A;  4XL9 A;  2BM6 A;  3ZPP A;  2VFO A;  4OZZ A;  2BM5 A;  2VFQ A;  2G0Y A;  3JX8 A;  4OJ5 A;  3SUC A;  4AVZ A;  4XKV A;  4Z05 A;  3SZE A;  2QX3 A;  2NZM A;  1OFD A;  1JRG A;  4OM9 A;  3VMW A;  4I84 A;  3VMV A;  2NTQ A;  4XLF A;  4XN0 A;  1O88 A;  1X0C A;  1DBG A;  3JUR A;  3N90 A;  4XOP A;  5AMV A;  2XC1 A;  1O8K A;  4XLE A;  4EW9 A;  1O8F A;  1OFL A;  2NST A;  2X6W A;  1O8L A;  4OJO A;  4YEI A;  1AIR A;  4XOT A;  3SYJ A;  2F3L A;  1PE9 A;  3LYC A;  4W8Q A;  4OJ6 A;  2UVE A;  1WXR A;  2INU A;  4XQF A;  4XON A;  1VBL A;  4YZQ A;  4YEJ A;  2O0V A;  4C2L A;  1O8J A;  1IB4 A;  3ML3 A;  1PXZ A;  3UW0 A;  1EA0 A;  2O6W A;  4W8T A;  1QA2 A;  1O8D A;  2QY1 A;  4XN3 A;  4W8S A;  3LJY A;  1O8I A;  5C1C A;  2XT4 A;  3GQ9 A;  2INV A;  1K4Z A;  2ODL A;  3T9G A;  3BH6 B;  2O04 A;  3VSV A;  1TYX A;  2IQ7 A;  4YDT A;  3VST A;  1QA3 A;  4U4B A;  2NTB A;  4OJP A;  2O0W A;  2PEC A;  2UVF A;  5DNS A;  1KCD A;  3DU1 X;  2PYG A;  3EQN A;  4OJL A;  3WWG A;  4YEL A;  2W7Z A;  3EQO A;  3B8Y A;  4MR0 A;  1EE6 A;  1IA5 A;  1NHC A;  2X85 A;  4OZY A;  3SQV A;  1GQ8 A;  3TH0 A;  5JLV C;  1PLU A;  4U49 A;  1O8H A;  1OGM X;  4XLA A;  3SY2 A;  2VFN A;  1QA1 A;  4HWV A;  1JTA A;  1KQ5 A;  3KRG A;  1QJV A;  2XTX A;  2XTW A;  1LLW A;  2YUH A;  3LMW A;  1HG8 A;  2J8I A;  4JRA C;  3NB2 A;  2Z8G A;  4Z03 A;  1BHE A;  1L1I A;  3GQ8 A;  2B0R A;  2XT2 A;  3PET A;  3AK5 A;  3RIQ A;  2VFP A;  1KCC A;  2NT6 A;  3GRH A;  1QQ1 A;  5C1E A;  2O17 A;  1TYW A;  1TSP A;  3H09 A;  2X6Y A;  3GQA A;  1O8E A;  1OFE A;  2VJI A;  4V02 C;  4YZX A;  3BH7 B;  4XOR A;  2BM7 A;  1CZF A;  1QRC A;  2BM4 A;  4NK8 A;  2QZA A;  1TYU A;  1OGO X;  2X3H A;  4XR6 A;  2BSP A;  2VJJ A;  4OPW A;  1BN8 A;  1IDK A;  1QCX A;  2NTP A;  4URR A;  4YCQ A;  1XG2 A;  4XNF A;  3P4G A;  1O8G A;  4MXN A;  2V5I A;  2VBK A;  1OOC A;  2VFM A;  3GQ7 A;  1K5C A;  2O1D A;  4XM3 A;  2QYU A;  4KH3 A;  1IDJ A;  2VBM A;  4YC5 A;  4PMH A;  3B4N A;  3ZSC A;  1DBO A;  4W8R A;  1OFM A;  1HF2 A;  5JMC B;  1DAB A;  1H80 A;  2PYH A;  1RMG A;  1LM1 A;  2NSP A;  2XTY A;  4YFO A;  1CLW A;  2BX6 A;  4XLH A;  3B90 A;  4XKW A;  4XMY A;  1RWR A;  4XLC A;  3PSZ A;  2EWE A;  4Z06 A;  4YZ0 A;  3FY3 A;  1WMR A;  2IOU G;  3NAW A;  2NT9 A;  1KTW A;  3PSS A;  4YZA A;  1RU4 A;  2QXZ A;  1LLZ A;  1K8F A; 
#chains in the Genus database with same CATH homology
 2BM4 A;  1KQ5 A;  3ML3 A;  1TYU A;  3N6Z A;  1QA2 A;  1QRB A;  1TYV A;  2BM6 A;  4OPW A;  2VFO A;  2BM5 A;  2YUH A;  2VFQ A;  2G0Y A;  3JX8 A;  3LJY A;  3P4G A;  2J8I A;  2V5I A;  4JRA C;  2VFM A;  4OJ5 A;  3SZE A;  1K4Z A;  4OM9 A;  2B0R A;  3BH6 B;  3PET A;  3AK5 A;  1TYX A;  2VFP A;  4KH3 A;  3RIQ A;  1QA3 A;  4OJP A;  5JMC B;  1HF2 A;  1DAB A;  1QQ1 A;  3N90 A;  1CLW A;  2BX6 A;  2XC1 A;  4OJL A;  1TYW A;  1TSP A;  3H09 A;  1WXR A;  2W7Z A;  4OJO A;  2IOU G;  3TH0 A;  5JLV C;  3SYJ A;  4V02 C;  2F3L A;  3BH7 B;  2BM7 A;  3LYC A;  4OJ6 A;  2VFN A;  1QRC A;  1QA1 A;  1K8F A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...