2VFQA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v450a
Total Genus 202
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
202
sequence length
556
structure length
556
Chain Sequence
DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYASNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Enterobacteria phage p22
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
molecule keywords P22 TAILSPIKE PROTEIN,
total genus 202
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfqA00
1TYWA 3ML3A 1QA2A 1QRBA 4KH3A 3AK5A 4OM9A 3SYJA 1TYVA 1QQ1A 2VFOA 2VFMA 2V5IA 3TH0A 1CLWA 1WXRA 1QA1A 2VFNA 2VFPA 3SZEA 1TYUA 1QRCA 2VFQA 2IOUG 3RIQA 1TYXA 1TSPA 2XC1A 3H09A 1DABA 1QA3A
chains in the Genus database with same CATH superfamily
1O8DA 3SY2A 2QYUA 2VBEA 4XKVA 3ZSCA 4MR0A 3B8YA 4XQFA 1QQ1A 2NT6A 3NAWA 2O04A 1OFDA 2X3HA 1OGMX 4XOTA 2Z8GA 3PSSA 1KCCA 1H80A 3VMVA 1IA5A 2B0RA 2XTXA 3DU1X 2VFNA 3BH6B 3JX8A 1KQ5A 4Z06A 1PXZA 4XLFA 4OPWA 4YFOA 1HG8A 2J8KA 4HWVA 2ODLA 4XMYA 5AMVA 2IQ7A 3UW0A 4XLEA 2BM7A 1DBOA 1O8FA 2INUA 2G0YA 4NK6A 4XL9A 4YZXA 1BN8A 2VBKA 3B90A 4Z05A 3VMWA 3NB2A 4XR6A 2NTPA 2BM4A 3N6ZA 3RIQA 3VSVA 4I84A 2O17A 3GQAA 4XN3A 4OZZA 4YEIA 1NHCA 2QY1A 2VJIA 4W8RA 1OFEA 2XTWA 3LJYA 4AVZA 4OJ6A 4C2LA 1LM1A 2NSTA 3SQVA 4OM9A 1KCDA 1TYVA 1QCXA 1X0CA 3P4GA 4XORA 2QXZA 1PLUA 4JRAC 3N90A 4URRA 1QJVA 4YCQA 1K5CA 1O8HA 4XONA 3VSUA 4XNFA 2BM5A 2XTYA 1EA0A 4EW9A 1JRGA 1O8IA 3EQNA 2O0WA 3ZPPA 1LLWA 4XLAA 5C1EA 5JLVC 3GQ9A 2BM6A 2NT9A 2NTQA 2UVEA 4MXNA 5C1CA 1EZGA 2PECA 4OJLA 3H09A 1DABA 2W7ZA 4V02C 4W8QA 2PYHA 3BH7B 1VBLA 1RU4A 3ML3A 2X85A 1GQ8A 4W8TA 1QA2A 1BHEA 4KH3A 2X6YA 2NSPA 1O8EA 2NTBA 2PYGA 3SYJA 1O8MA 4NK8A 4YELA 1HF2A 3B4NA 4YZAA 2O6WA 2QZAA 3TH0A 4W8SA 1CLWA 3EQOA 1QA1A 1WXRA 3LYCA 4PMHA 4YZ0A 2F3LA 1O8KA 3SZEA 4XOPA 2NZMA 1XG2A 1O8LA 4YDTA 5JMCB 3JURA 1O8GA 2BSPA 3WWGA 2X6WA 2IOUG 4OJ5A 1TSPA 1OFMA 1QA3A 3T9GA 1DBGA 3KRGA 1RMGA 1TYWA 4OZYA 1OFLA 1QRBA 4XN0A 1CZFA 3GRHA 1PE9A 3FY3A 3PETA 2XT2A 3AK5A 2UVFA 4XLHA 2XT4A 3PSZA 2VFOA 2QX3A 3VSTA 2O0VA 1K8FA 2BX6A 2VFMA 2V5IA 2YUHA 4YC5A 4YZQA 2X6XA 1RWRA 3SUCA 3GQ8A 4XLCA 2VFPA 2O1DA 4YEJA 1LLZA 1OOCA 1WMRA 4XM3A 1TYUA 5DNSA 1OGOX 4Z03A 1IB4A 1O88A 1EE6A 2EWEA 2INVA 1QRCA 1L1IA 1IDJA 1KTWA 4U4BA 4XKWA 1O8JA 3LMWA 1K4ZA 1IDKA 2VFQA 1JTAA 4OJPA 1TYXA 2XC1A 4OJOA 4U49A 1AIRA 2VBMA 3GQ7A 2VJJA 2J8IA
chains in the Genus database with same CATH topology
1TYWA 3ML3A 3LJYA 1QRBA 4OJ6A 1QA2A 4KH3A 3PETA 3AK5A 4OM9A 3SYJA 1TYVA 3P4GA 1QQ1A 1HF2A 4JRAC 2VFOA 3N90A 2YUHA 1K8FA 2BX6A 2VFMA 2V5IA 3TH0A 1CLWA 1WXRA 1QA1A 2BM5A 2B0RA 3LYCA 2VFNA 2F3LA 2VFPA 3BH6B 1KQ5A 3JX8A 4OPWA 3SZEA 1TYUA 5JMCB 5JLVC 2BM7A 1QRCA 2G0YA 4V02C 2BM6A 1K4ZA 2VFQA 2IOUG 3N6ZA 2BM4A 4OJ5A 1TYXA 1TSPA 2XC1A 3H09A 4OJPA 4OJLA 4OJOA 3RIQA 1DABA 1QA3A 2W7ZA 2J8IA 3BH7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYW A;  3ML3 A;  1QA2 A;  1QRB A;  4KH3 A;  3AK5 A;  4OM9 A;  3SYJ A;  1TYV A;  1QQ1 A;  2VFO A;  2VFM A;  2V5I A;  3TH0 A;  1CLW A;  1WXR A;  1QA1 A;  2VFN A;  2VFP A;  3SZE A;  1TYU A;  1QRC A;  2VFQ A;  2IOU G;  3RIQ A;  1TYX A;  1TSP A;  2XC1 A;  3H09 A;  1DAB A;  1QA3 A; 
#chains in the Genus database with same CATH topology
 1O8D A;  3SY2 A;  2QYU A;  2VBE A;  4XKV A;  3ZSC A;  4MR0 A;  3B8Y A;  4XQF A;  1QQ1 A;  2NT6 A;  3NAW A;  2O04 A;  1OFD A;  2X3H A;  1OGM X;  4XOT A;  2Z8G A;  3PSS A;  1KCC A;  1H80 A;  3VMV A;  1IA5 A;  2B0R A;  2XTX A;  3DU1 X;  2VFN A;  3BH6 B;  3JX8 A;  1KQ5 A;  4Z06 A;  1PXZ A;  4XLF A;  4OPW A;  4YFO A;  1HG8 A;  2J8K A;  4HWV A;  2ODL A;  4XMY A;  5AMV A;  2IQ7 A;  3UW0 A;  4XLE A;  2BM7 A;  1DBO A;  1O8F A;  2INU A;  2G0Y A;  4NK6 A;  4XL9 A;  4YZX A;  1BN8 A;  2VBK A;  3B90 A;  4Z05 A;  3VMW A;  3NB2 A;  4XR6 A;  2NTP A;  2BM4 A;  3N6Z A;  3RIQ A;  3VSV A;  4I84 A;  2O17 A;  3GQA A;  4XN3 A;  4OZZ A;  4YEI A;  1NHC A;  2QY1 A;  2VJI A;  4W8R A;  1OFE A;  2XTW A;  3LJY A;  4AVZ A;  4OJ6 A;  4C2L A;  1LM1 A;  2NST A;  3SQV A;  4OM9 A;  1KCD A;  1TYV A;  1QCX A;  1X0C A;  3P4G A;  4XOR A;  2QXZ A;  1PLU A;  4JRA C;  3N90 A;  4URR A;  1QJV A;  4YCQ A;  1K5C A;  1O8H A;  4XON A;  3VSU A;  4XNF A;  2BM5 A;  2XTY A;  1EA0 A;  4EW9 A;  1JRG A;  1O8I A;  3EQN A;  2O0W A;  3ZPP A;  1LLW A;  4XLA A;  5C1E A;  5JLV C;  3GQ9 A;  2BM6 A;  2NT9 A;  2NTQ A;  2UVE A;  4MXN A;  5C1C A;  1EZG A;  2PEC A;  4OJL A;  3H09 A;  1DAB A;  2W7Z A;  4V02 C;  4W8Q A;  2PYH A;  3BH7 B;  1VBL A;  1RU4 A;  3ML3 A;  2X85 A;  1GQ8 A;  4W8T A;  1QA2 A;  1BHE A;  4KH3 A;  2X6Y A;  2NSP A;  1O8E A;  2NTB A;  2PYG A;  3SYJ A;  1O8M A;  4NK8 A;  4YEL A;  1HF2 A;  3B4N A;  4YZA A;  2O6W A;  2QZA A;  3TH0 A;  4W8S A;  1CLW A;  3EQO A;  1QA1 A;  1WXR A;  3LYC A;  4PMH A;  4YZ0 A;  2F3L A;  1O8K A;  3SZE A;  4XOP A;  2NZM A;  1XG2 A;  1O8L A;  4YDT A;  5JMC B;  3JUR A;  1O8G A;  2BSP A;  3WWG A;  2X6W A;  2IOU G;  4OJ5 A;  1TSP A;  1OFM A;  1QA3 A;  3T9G A;  1DBG A;  3KRG A;  1RMG A;  1TYW A;  4OZY A;  1OFL A;  1QRB A;  4XN0 A;  1CZF A;  3GRH A;  1PE9 A;  3FY3 A;  3PET A;  2XT2 A;  3AK5 A;  2UVF A;  4XLH A;  2XT4 A;  3PSZ A;  2VFO A;  2QX3 A;  3VST A;  2O0V A;  1K8F A;  2BX6 A;  2VFM A;  2V5I A;  2YUH A;  4YC5 A;  4YZQ A;  2X6X A;  1RWR A;  3SUC A;  3GQ8 A;  4XLC A;  2VFP A;  2O1D A;  4YEJ A;  1LLZ A;  1OOC A;  1WMR A;  4XM3 A;  1TYU A;  5DNS A;  1OGO X;  4Z03 A;  1IB4 A;  1O88 A;  1EE6 A;  2EWE A;  2INV A;  1QRC A;  1L1I A;  1IDJ A;  1KTW A;  4U4B A;  4XKW A;  1O8J A;  3LMW A;  1K4Z A;  1IDK A;  2VFQ A;  1JTA A;  4OJP A;  1TYX A;  2XC1 A;  4OJO A;  4U49 A;  1AIR A;  2VBM A;  3GQ7 A;  2VJJ A;  2J8I A; 
#chains in the Genus database with same CATH homology
 1TYW A;  3ML3 A;  3LJY A;  1QRB A;  4OJ6 A;  1QA2 A;  4KH3 A;  3PET A;  3AK5 A;  4OM9 A;  3SYJ A;  1TYV A;  3P4G A;  1QQ1 A;  1HF2 A;  4JRA C;  2VFO A;  3N90 A;  2YUH A;  1K8F A;  2BX6 A;  2VFM A;  2V5I A;  3TH0 A;  1CLW A;  1WXR A;  1QA1 A;  2BM5 A;  2B0R A;  3LYC A;  2VFN A;  2F3L A;  2VFP A;  3BH6 B;  1KQ5 A;  3JX8 A;  4OPW A;  3SZE A;  1TYU A;  5JMC B;  5JLV C;  2BM7 A;  1QRC A;  2G0Y A;  4V02 C;  2BM6 A;  1K4Z A;  2VFQ A;  2IOU G;  3N6Z A;  2BM4 A;  4OJ5 A;  1TYX A;  1TSP A;  2XC1 A;  3H09 A;  4OJP A;  4OJL A;  4OJO A;  3RIQ A;  1DAB A;  1QA3 A;  2W7Z A;  2J8I A;  3BH7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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