2VFQA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v450a
Total Genus 202
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
202
sequence length
556
structure length
556
Chain Sequence
DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYASNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P22 TAILSPIKE PROTEIN,
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 202
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfqA00
2VFNA 1TYWA 1DABA 1QQ1A 1TSPA 4OM9A 1TYXA 3H09A 2VFOA 2VFQA 4KH3A 2IOUG 1WXRA 1QA2A 2V5IA 2VFMA 1CLWA 3SZEA 3RIQA 1QA3A 1QRCA 2VFPA 1TYUA 1QA1A 3TH0A 3AK5A 1TYVA 3SYJA 2XC1A 1QRBA 3ML3A
chains in the Genus database with same CATH superfamily
2XTXA 1O8EA 4XN3A 2NT9A 1K8FA 4U49A 1LM1A 4W8QA 3B90A 3JURA 1IDJA 1QQ1A 2BM4A 4W8SA 4Z06A 1QJVA 1DABA 4YEJA 3B4NA 1OGOX 1X0CA 3ZSCA 4I84A 3ZPPA 4XR6A 5C1CA 4YZ0A 2VBMA 4OJLA 4XONA 2QX3A 1OOCA 3B8YA 1VBLA 2VFMA 1O8JA 4XQFA 2X85A 5JMCB 4URRA 2VBKA 4OJ5A 3GQAA 4YFOA 1QRCA 4XL9A 1TYUA 4YZQA 2XTWA 4Z03A 3VMVA 1NHCA 1BHEA 2QYUA 2INUA 1KTWA 2VJJA 3ML3A 1RWRA 3GQ8A 2VFNA 1H80A 2BX6A 3VSTA 1IB4A 1TYWA 3PSSA 4OJ6A 3SUCA 2XT2A 3GQ9A 4XLCA 3T9GA 1K5CA 1QCXA 1DBGA 2PECA 2QXZA 2PYGA 4OJPA 4XOTA 1O8KA 4YZXA 4NK8A 2O6WA 1OFMA 3VSUA 1KCCA 2VFOA 1K4ZA 1PE9A 4OZYA 2B0RA 2VFQA 2UVFA 4XLFA 2QZAA 2IOUG 4NK6A 2X6WA 3VMWA 1HF2A 3UW0A 2V5IA 2X6YA 3SZEA 2IQ7A 3EQOA 1KCDA 2X3HA 1O8GA 1RMGA 3BH6B 4PMHA 3WWGA 4YCQA 3GQ7A 3JX8A 2YUHA 4HWVA 1QA1A 3P4GA 1OFLA 1TYVA 4OPWA 3AK5A 1O8HA 1O8LA 2XT4A 1GQ8A 2BM7A 4XLAA 4AVZA 4XLEA 2NZMA 4EW9A 5JLVC 4XORA 2NSPA 4MXNA 1KQ5A 3EQNA 3N6ZA 1XG2A 1PLUA 1JRGA 2Z8GA 4YEIA 1AIRA 1TSPA 2NTBA 4OJOA 4XKVA 2BSPA 2NTPA 1TYXA 4U4BA 1O8FA 1OFEA 1HG8A 3H09A 4W8RA 4YZAA 3LJYA 2INVA 4KH3A 1JTAA 1EE6A 1O88A 5C1EA 2UVEA 4MR0A 4W8TA 1CLWA 4XMYA 1BN8A 4XN0A 2XTYA 2VBEA 2ODLA 3SQVA 3DU1X 2O0VA 2VFPA 3NAWA 3N90A 2J8KA 3TH0A 3GRHA 4XM3A 4YC5A 2X6XA 2O04A 1QRBA 1RU4A 1O8DA 4XOPA 2PYHA 4V02C 2O1DA 4OZZA 1EZGA 3NB2A 4XNFA 3PSZA 5AMVA 1OFDA 2NTQA 1PXZA 2EWEA 1IDKA 2NT6A 1IA5A 1L1IA 4XLHA 4C2LA 2VJIA 5DNSA 4OM9A 2O17A 4XKWA 3KRGA 4JRAC 1O8IA 2F3LA 1O8MA 1LLZA 2BM6A 3LYCA 2O0WA 2W7ZA 3VSVA 1QA2A 1WXRA 3SY2A 3PETA 4YELA 2NSTA 1DBOA 1WMRA 2BM5A 3LMWA 3RIQA 1QA3A 4Z05A 2QY1A 4YDTA 1EA0A 1OGMX 1CZFA 3SYJA 2XC1A 1LLWA 2G0YA 3FY3A 2J8IA 3BH7B
chains in the Genus database with same CATH topology
4V02C 2VFNA 2BX6A 1KQ5A 3N6ZA 1K8FA 1TYWA 4OJ6A 1DABA 1QQ1A 2BM4A 1TSPA 4OJOA 4OM9A 4OJPA 1TYXA 4JRAC 3H09A 2VFOA 1K4ZA 3LJYA 2F3LA 2B0RA 2VFQA 4KH3A 2IOUG 4OJLA 2BM6A 1HF2A 3LYCA 1QA2A 2W7ZA 1WXRA 2V5IA 2VFMA 1CLWA 3SZEA 3PETA 5JMCB 4OJ5A 3BH6B 2BM5A 3RIQA 1QA3A 1QRCA 2VFPA 1TYUA 2YUHA 3JX8A 3N90A 3P4GA 3TH0A 1QA1A 3AK5A 1TYVA 4OPWA 3SYJA 2XC1A 2BM7A 2G0YA 1QRBA 5JLVC 2J8IA 3BH7B 3ML3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFN A;  1TYW A;  1DAB A;  1QQ1 A;  1TSP A;  4OM9 A;  1TYX A;  3H09 A;  2VFO A;  2VFQ A;  4KH3 A;  2IOU G;  1WXR A;  1QA2 A;  2V5I A;  2VFM A;  1CLW A;  3SZE A;  3RIQ A;  1QA3 A;  1QRC A;  2VFP A;  1TYU A;  1QA1 A;  3TH0 A;  3AK5 A;  1TYV A;  3SYJ A;  2XC1 A;  1QRB A;  3ML3 A; 
#chains in the Genus database with same CATH topology
 2XTX A;  1O8E A;  4XN3 A;  2NT9 A;  1K8F A;  4U49 A;  1LM1 A;  4W8Q A;  3B90 A;  3JUR A;  1IDJ A;  1QQ1 A;  2BM4 A;  4W8S A;  4Z06 A;  1QJV A;  1DAB A;  4YEJ A;  3B4N A;  1OGO X;  1X0C A;  3ZSC A;  4I84 A;  3ZPP A;  4XR6 A;  5C1C A;  4YZ0 A;  2VBM A;  4OJL A;  4XON A;  2QX3 A;  1OOC A;  3B8Y A;  1VBL A;  2VFM A;  1O8J A;  4XQF A;  2X85 A;  5JMC B;  4URR A;  2VBK A;  4OJ5 A;  3GQA A;  4YFO A;  1QRC A;  4XL9 A;  1TYU A;  4YZQ A;  2XTW A;  4Z03 A;  3VMV A;  1NHC A;  1BHE A;  2QYU A;  2INU A;  1KTW A;  2VJJ A;  3ML3 A;  1RWR A;  3GQ8 A;  2VFN A;  1H80 A;  2BX6 A;  3VST A;  1IB4 A;  1TYW A;  3PSS A;  4OJ6 A;  3SUC A;  2XT2 A;  3GQ9 A;  4XLC A;  3T9G A;  1K5C A;  1QCX A;  1DBG A;  2PEC A;  2QXZ A;  2PYG A;  4OJP A;  4XOT A;  1O8K A;  4YZX A;  4NK8 A;  2O6W A;  1OFM A;  3VSU A;  1KCC A;  2VFO A;  1K4Z A;  1PE9 A;  4OZY A;  2B0R A;  2VFQ A;  2UVF A;  4XLF A;  2QZA A;  2IOU G;  4NK6 A;  2X6W A;  3VMW A;  1HF2 A;  3UW0 A;  2V5I A;  2X6Y A;  3SZE A;  2IQ7 A;  3EQO A;  1KCD A;  2X3H A;  1O8G A;  1RMG A;  3BH6 B;  4PMH A;  3WWG A;  4YCQ A;  3GQ7 A;  3JX8 A;  2YUH A;  4HWV A;  1QA1 A;  3P4G A;  1OFL A;  1TYV A;  4OPW A;  3AK5 A;  1O8H A;  1O8L A;  2XT4 A;  1GQ8 A;  2BM7 A;  4XLA A;  4AVZ A;  4XLE A;  2NZM A;  4EW9 A;  5JLV C;  4XOR A;  2NSP A;  4MXN A;  1KQ5 A;  3EQN A;  3N6Z A;  1XG2 A;  1PLU A;  1JRG A;  2Z8G A;  4YEI A;  1AIR A;  1TSP A;  2NTB A;  4OJO A;  4XKV A;  2BSP A;  2NTP A;  1TYX A;  4U4B A;  1O8F A;  1OFE A;  1HG8 A;  3H09 A;  4W8R A;  4YZA A;  3LJY A;  2INV A;  4KH3 A;  1JTA A;  1EE6 A;  1O88 A;  5C1E A;  2UVE A;  4MR0 A;  4W8T A;  1CLW A;  4XMY A;  1BN8 A;  4XN0 A;  2XTY A;  2VBE A;  2ODL A;  3SQV A;  3DU1 X;  2O0V A;  2VFP A;  3NAW A;  3N90 A;  2J8K A;  3TH0 A;  3GRH A;  4XM3 A;  4YC5 A;  2X6X A;  2O04 A;  1QRB A;  1RU4 A;  1O8D A;  4XOP A;  2PYH A;  4V02 C;  2O1D A;  4OZZ A;  1EZG A;  3NB2 A;  4XNF A;  3PSZ A;  5AMV A;  1OFD A;  2NTQ A;  1PXZ A;  2EWE A;  1IDK A;  2NT6 A;  1IA5 A;  1L1I A;  4XLH A;  4C2L A;  2VJI A;  5DNS A;  4OM9 A;  2O17 A;  4XKW A;  3KRG A;  4JRA C;  1O8I A;  2F3L A;  1O8M A;  1LLZ A;  2BM6 A;  3LYC A;  2O0W A;  2W7Z A;  3VSV A;  1QA2 A;  1WXR A;  3SY2 A;  3PET A;  4YEL A;  2NST A;  1DBO A;  1WMR A;  2BM5 A;  3LMW A;  3RIQ A;  1QA3 A;  4Z05 A;  2QY1 A;  4YDT A;  1EA0 A;  1OGM X;  1CZF A;  3SYJ A;  2XC1 A;  1LLW A;  2G0Y A;  3FY3 A;  2J8I A;  3BH7 B; 
#chains in the Genus database with same CATH homology
 4V02 C;  2VFN A;  2BX6 A;  1KQ5 A;  3N6Z A;  1K8F A;  1TYW A;  4OJ6 A;  1DAB A;  1QQ1 A;  2BM4 A;  1TSP A;  4OJO A;  4OM9 A;  4OJP A;  1TYX A;  4JRA C;  3H09 A;  2VFO A;  1K4Z A;  3LJY A;  2F3L A;  2B0R A;  2VFQ A;  4KH3 A;  2IOU G;  4OJL A;  2BM6 A;  1HF2 A;  3LYC A;  1QA2 A;  2W7Z A;  1WXR A;  2V5I A;  2VFM A;  1CLW A;  3SZE A;  3PET A;  5JMC B;  4OJ5 A;  3BH6 B;  2BM5 A;  3RIQ A;  1QA3 A;  1QRC A;  2VFP A;  1TYU A;  2YUH A;  3JX8 A;  3N90 A;  3P4G A;  3TH0 A;  1QA1 A;  3AK5 A;  1TYV A;  4OPW A;  3SYJ A;  2XC1 A;  2BM7 A;  2G0Y A;  1QRB A;  5JLV C;  2J8I A;  3BH7 B;  3ML3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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