2VFQA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v450a
Total Genus 202
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
202
sequence length
556
structure length
556
Chain Sequence
DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYASNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P22 TAILSPIKE PROTEIN,
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 202
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfqA00
2VFMA 4OM9A 1QA3A 4KH3A 2VFQA 2VFNA 1CLWA 3SYJA 3TH0A 2V5IA 2IOUG 3H09A 1QRBA 1TYXA 1QQ1A 3ML3A 1TYUA 2VFPA 1WXRA 1DABA 2XC1A 2VFOA 3RIQA 1QA1A 1TYWA 3SZEA 1QA2A 1TYVA 3AK5A 1TSPA 1QRCA
chains in the Genus database with same CATH superfamily
1PE9A 1WMRA 2BM7A 2BSPA 3B4NA 4XOPA 4V02C 3JURA 4OM9A 1QA3A 1O8EA 1OFMA 2NSTA 2VBEA 3N6ZA 4XQFA 2ODLA 4XLHA 2XTWA 2NTBA 4XLEA 4XONA 1KCCA 1BN8A 1OFEA 3EQNA 1O8LA 4YDTA 3T9GA 1KCDA 2NZMA 2W7ZA 1HG8A 1LLZA 1WXRA 3DU1X 3WWGA 1H80A 4YEIA 3JX8A 4NK6A 3SQVA 1OGMX 2X85A 1K4ZA 4XN0A 4YZAA 1QA1A 1OFDA 2NTQA 2PECA 3PSZA 1O8GA 3SZEA 1O8MA 3PETA 3SUCA 2G0YA 1TSPA 3ZSCA 2J8IA 1X0CA 3P4GA 1K5CA 5JLVC 4YZQA 4XLAA 2VBMA 2VJJA 4YEJA 2PYHA 2QZAA 3BH6B 4KH3A 5C1CA 1IA5A 1IB4A 3GQ8A 4MR0A 4XNFA 2X6WA 2O1DA 2QY1A 3N90A 3GRHA 3SYJA 1PXZA 2BM4A 3LMWA 3GQ7A 2V5IA 1CZFA 2XT4A 4PMHA 3FY3A 1RMGA 4XLFA 4XLCA 1AIRA 2BM5A 2B0RA 4Z05A 5JMCB 4OJPA 3GQ9A 3VSTA 3SY2A 2VJIA 2O0VA 2XTXA 1BHEA 4JRAC 3GQAA 1K8FA 2XC1A 3RIQA 1QCXA 4AVZA 2O0WA 3VMWA 3EQOA 3VSUA 4YC5A 2INVA 3AK5A 2NTPA 3NAWA 4HWVA 4W8SA 2UVFA 3LYCA 4YZXA 1O8FA 4W8RA 2PYGA 1IDKA 4XM3A 2O17A 1OGOX 2QXZA 2EWEA 2Z8GA 2O04A 1CLWA 4EW9A 2VBKA 2QYUA 3TH0A 1O88A 4OZZA 2IOUG 4YFOA 2X6XA 1KTWA 4U49A 1LM1A 2UVEA 3UW0A 1QRBA 1EZGA 1O8DA 2XT2A 2O6WA 4I84A 1VBLA 3B8YA 3ML3A 1TYUA 1EA0A 2VFPA 2QX3A 5C1EA 4YZ0A 1RWRA 1OOCA 3B90A 4W8TA 1IDJA 1JTAA 2NT9A 2VFOA 4OJ5A 1XG2A 2F3LA 3VSVA 1QJVA 4NK8A 2X6YA 1TYVA 4XN3A 3VMVA 5DNSA 1QRCA 1O8KA 2YUHA 1KQ5A 2BM6A 3NB2A 2XTYA 4MXNA 2VFMA 4XL9A 1GQ8A 1O8HA 4YELA 2BX6A 1EE6A 1LLWA 4OJOA 1O8IA 1O8JA 2VFNA 2VFQA 4OJLA 4U4BA 4URRA 4XKVA 4XOTA 4Z03A 1OFLA 3BH7B 3ZPPA 4XR6A 4XORA 4C2LA 2IQ7A 4W8QA 2NT6A 3LJYA 3H09A 4OZYA 4XKWA 2INUA 1DBGA 1TYXA 2J8KA 1NHCA 1QQ1A 4XMYA 1RU4A 1DABA 3KRGA 4YCQA 1PLUA 1HF2A 4Z06A 1TYWA 2NSPA 1L1IA 3PSSA 1DBOA 5AMVA 4OPWA 2X3HA 4OJ6A 1JRGA 1QA2A
chains in the Genus database with same CATH topology
2YUHA 1KQ5A 2BM6A 5JLVC 2BM7A 2VFMA 3LYCA 4V02C 4OM9A 1QA3A 2BX6A 3BH6B 4KH3A 4OJOA 2VFNA 2J8IA 2VFQA 4OJLA 1CLWA 3N90A 3N6ZA 3SYJA 3TH0A 2BM4A 3BH7B 2V5IA 2IOUG 3P4GA 3LJYA 3H09A 1QRBA 2B0RA 2BM5A 5JMCB 4OJPA 1TYXA 1QQ1A 2W7ZA 3ML3A 1TYUA 2VFPA 4JRAC 1WXRA 1DABA 1K8FA 2G0YA 2XC1A 3JX8A 4OJ5A 2VFOA 1K4ZA 1HF2A 3RIQA 1QA1A 4OJ6A 1TYWA 2F3LA 3SZEA 1QA2A 3PETA 4OPWA 1TYVA 3AK5A 1TSPA 1QRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFM A;  4OM9 A;  1QA3 A;  4KH3 A;  2VFQ A;  2VFN A;  1CLW A;  3SYJ A;  3TH0 A;  2V5I A;  2IOU G;  3H09 A;  1QRB A;  1TYX A;  1QQ1 A;  3ML3 A;  1TYU A;  2VFP A;  1WXR A;  1DAB A;  2XC1 A;  2VFO A;  3RIQ A;  1QA1 A;  1TYW A;  3SZE A;  1QA2 A;  1TYV A;  3AK5 A;  1TSP A;  1QRC A; 
#chains in the Genus database with same CATH topology
 1PE9 A;  1WMR A;  2BM7 A;  2BSP A;  3B4N A;  4XOP A;  4V02 C;  3JUR A;  4OM9 A;  1QA3 A;  1O8E A;  1OFM A;  2NST A;  2VBE A;  3N6Z A;  4XQF A;  2ODL A;  4XLH A;  2XTW A;  2NTB A;  4XLE A;  4XON A;  1KCC A;  1BN8 A;  1OFE A;  3EQN A;  1O8L A;  4YDT A;  3T9G A;  1KCD A;  2NZM A;  2W7Z A;  1HG8 A;  1LLZ A;  1WXR A;  3DU1 X;  3WWG A;  1H80 A;  4YEI A;  3JX8 A;  4NK6 A;  3SQV A;  1OGM X;  2X85 A;  1K4Z A;  4XN0 A;  4YZA A;  1QA1 A;  1OFD A;  2NTQ A;  2PEC A;  3PSZ A;  1O8G A;  3SZE A;  1O8M A;  3PET A;  3SUC A;  2G0Y A;  1TSP A;  3ZSC A;  2J8I A;  1X0C A;  3P4G A;  1K5C A;  5JLV C;  4YZQ A;  4XLA A;  2VBM A;  2VJJ A;  4YEJ A;  2PYH A;  2QZA A;  3BH6 B;  4KH3 A;  5C1C A;  1IA5 A;  1IB4 A;  3GQ8 A;  4MR0 A;  4XNF A;  2X6W A;  2O1D A;  2QY1 A;  3N90 A;  3GRH A;  3SYJ A;  1PXZ A;  2BM4 A;  3LMW A;  3GQ7 A;  2V5I A;  1CZF A;  2XT4 A;  4PMH A;  3FY3 A;  1RMG A;  4XLF A;  4XLC A;  1AIR A;  2BM5 A;  2B0R A;  4Z05 A;  5JMC B;  4OJP A;  3GQ9 A;  3VST A;  3SY2 A;  2VJI A;  2O0V A;  2XTX A;  1BHE A;  4JRA C;  3GQA A;  1K8F A;  2XC1 A;  3RIQ A;  1QCX A;  4AVZ A;  2O0W A;  3VMW A;  3EQO A;  3VSU A;  4YC5 A;  2INV A;  3AK5 A;  2NTP A;  3NAW A;  4HWV A;  4W8S A;  2UVF A;  3LYC A;  4YZX A;  1O8F A;  4W8R A;  2PYG A;  1IDK A;  4XM3 A;  2O17 A;  1OGO X;  2QXZ A;  2EWE A;  2Z8G A;  2O04 A;  1CLW A;  4EW9 A;  2VBK A;  2QYU A;  3TH0 A;  1O88 A;  4OZZ A;  2IOU G;  4YFO A;  2X6X A;  1KTW A;  4U49 A;  1LM1 A;  2UVE A;  3UW0 A;  1QRB A;  1EZG A;  1O8D A;  2XT2 A;  2O6W A;  4I84 A;  1VBL A;  3B8Y A;  3ML3 A;  1TYU A;  1EA0 A;  2VFP A;  2QX3 A;  5C1E A;  4YZ0 A;  1RWR A;  1OOC A;  3B90 A;  4W8T A;  1IDJ A;  1JTA A;  2NT9 A;  2VFO A;  4OJ5 A;  1XG2 A;  2F3L A;  3VSV A;  1QJV A;  4NK8 A;  2X6Y A;  1TYV A;  4XN3 A;  3VMV A;  5DNS A;  1QRC A;  1O8K A;  2YUH A;  1KQ5 A;  2BM6 A;  3NB2 A;  2XTY A;  4MXN A;  2VFM A;  4XL9 A;  1GQ8 A;  1O8H A;  4YEL A;  2BX6 A;  1EE6 A;  1LLW A;  4OJO A;  1O8I A;  1O8J A;  2VFN A;  2VFQ A;  4OJL A;  4U4B A;  4URR A;  4XKV A;  4XOT A;  4Z03 A;  1OFL A;  3BH7 B;  3ZPP A;  4XR6 A;  4XOR A;  4C2L A;  2IQ7 A;  4W8Q A;  2NT6 A;  3LJY A;  3H09 A;  4OZY A;  4XKW A;  2INU A;  1DBG A;  1TYX A;  2J8K A;  1NHC A;  1QQ1 A;  4XMY A;  1RU4 A;  1DAB A;  3KRG A;  4YCQ A;  1PLU A;  1HF2 A;  4Z06 A;  1TYW A;  2NSP A;  1L1I A;  3PSS A;  1DBO A;  5AMV A;  4OPW A;  2X3H A;  4OJ6 A;  1JRG A;  1QA2 A; 
#chains in the Genus database with same CATH homology
 2YUH A;  1KQ5 A;  2BM6 A;  5JLV C;  2BM7 A;  2VFM A;  3LYC A;  4V02 C;  4OM9 A;  1QA3 A;  2BX6 A;  3BH6 B;  4KH3 A;  4OJO A;  2VFN A;  2J8I A;  2VFQ A;  4OJL A;  1CLW A;  3N90 A;  3N6Z A;  3SYJ A;  3TH0 A;  2BM4 A;  3BH7 B;  2V5I A;  2IOU G;  3P4G A;  3LJY A;  3H09 A;  1QRB A;  2B0R A;  2BM5 A;  5JMC B;  4OJP A;  1TYX A;  1QQ1 A;  2W7Z A;  3ML3 A;  1TYU A;  2VFP A;  4JRA C;  1WXR A;  1DAB A;  1K8F A;  2G0Y A;  2XC1 A;  3JX8 A;  4OJ5 A;  2VFO A;  1K4Z A;  1HF2 A;  3RIQ A;  1QA1 A;  4OJ6 A;  1TYW A;  2F3L A;  3SZE A;  1QA2 A;  3PET A;  4OPW A;  1TYV A;  3AK5 A;  1TSP A;  1QRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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