3N90A

The 1.7 angstrom resolution crystal structure of at2g44920, a pentapeptide repeat protein from arabidopsis thaliana thylakoid lumen.
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
145
structure length
145
Chain Sequence
AFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Arabidopsis thaliana
publication title The 1.7 Angstrom resolution crystal structure of AT2G44920, a pentapeptide repeat protein from Arabidopsis thaliana thylakoid lumen.
rcsb
molecule keywords Thylakoid lumenal 15 kDa protein 1, chloroplastic
total genus 67
structure length 145
sequence length 145
ec nomenclature
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3n90A00
2G0YA 2BM6A 2F3LA 2BM7A 5JLVC 3N90A 5JMCB 4JRAC 2BM4A 2BM5A 2J8IA 2W7ZA
chains in the Genus database with same CATH superfamily
1O8DA 1TSPA 1KTWA 3BH6B 1EA0A 3GQ7A 1QQ1A 4YELA 2V5IA 5C1CA 2BM4A 1IDKA 2VFQA 3ML3A 4Z05A 3NB2A 3VSVA 1OFMA 2F3LA 4XKWA 3PSSA 2VBKA 2O0VA 3N90A 2PECA 3VSTA 4OZYA 2J8KA 1JRGA 4OJPA 4OZZA 4I84A 4Z06A 1RMGA 4XN3A 4XLCA 1TYXA 2NT9A 3PSZA 1QCXA 1LM1A 4OJ5A 2NT6A 3B4NA 1H80A 4NK8A 4XN0A 3SZEA 3BH7B 4YEJA 3B90A 1LLWA 3GRHA 2NZMA 4AVZA 2EWEA 2XTWA 4YFOA 2NTQA 5C1EA 1QRCA 1RU4A 1BN8A 2X6WA 4MXNA 1O8KA 2UVFA 3TH0A 2VBEA 1IDJA 3EQNA 4XOTA 2QY1A 3AK5A 1HF2A 1OFLA 2QYUA 2VFNA 4U49A 1NHCA 1KCCA 3B8YA 3VSUA 4W8RA 5JLVC 4YDTA 1OFDA 2IOUG 1PLUA 2X3HA 2VFPA 4OJLA 3VMVA 1GQ8A 1LLZA 1EE6A 2VBMA 1QJVA 2O1DA 1K4ZA 2QX3A 1OGMX 2XT2A 4XR6A 4XONA 2VJJA 4XLHA 4EW9A 2NTPA 2XTYA 4YZXA 4YZQA 1DBOA 1VBLA 2VFOA 2XC1A 1QA1A 1X0CA 1TYVA 1HG8A 1PXZA 1DBGA 3JURA 1OGOX 1EZGA 3GQ9A 2G0YA 4HWVA 1PE9A 1KQ5A 3EQOA 4W8TA 2BX6A 4XLAA 1KCDA 4JRAC 3LYCA 1QRBA 4YZ0A 2J8IA 1K8FA 1O88A 4C2LA 1TYWA 4OPWA 1BHEA 4OJ6A 2B0RA 2BM7A 4PMHA 1O8MA 4OM9A 3JX8A 2INVA 4MR0A 1IA5A 1CLWA 3LJYA 1OFEA 2O04A 5DNSA 3H09A 1O8HA 4XORA 1CZFA 3P4GA 1O8LA 4YCQA 3WWGA 3ZPPA 4XM3A 1RWRA 2O17A 4W8SA 2UVEA 1WXRA 1XG2A 4XMYA 3SY2A 4XKVA 4XOPA 3FY3A 2PYHA 2QXZA 2VJIA 2IQ7A 4NK6A 2O0WA 3SYJA 1IB4A 3VMWA 1K5CA 1JTAA 2NSPA 2YUHA 4XNFA 3NAWA 4OJOA 2INUA 3LMWA 1WMRA 2W7ZA 2XTXA 4YEIA 3N6ZA 1O8EA 2X6YA 3KRGA 3DU1X 2NSTA 4YZAA 1QA3A 3ZSCA 3GQAA 1L1IA 2BM5A 4KH3A 4U4BA 3SUCA 3RIQA 1O8GA 2X6XA 1O8FA 2NTBA 4XLEA 2QZAA 1O8IA 4Z03A 1TYUA 2X85A 5AMVA 4XL9A 4URRA 2BM6A 3T9GA 4V02C 4YC5A 4XQFA 2O6WA 4XLFA 2XT4A 3GQ8A 1DABA 3SQVA 3PETA 3UW0A 1OOCA 1O8JA 2VFMA 2Z8GA 5JMCB 1AIRA 2ODLA 2PYGA 1QA2A 4W8QA 2BSPA
chains in the Genus database with same CATH topology
3BH7B 2G0YA 3N6ZA 1KQ5A 1TSPA 3BH6B 1QQ1A 2BX6A 2V5IA 1QA3A 4JRAC 2BM4A 1QRCA 2BM5A 1QRBA 2J8IA 1K8FA 2VFQA 3LYCA 3ML3A 4KH3A 3TH0A 3RIQA 2F3LA 3SZEA 1TYWA 4OPWA 4OJ6A 2B0RA 1HF2A 2BM7A 3N90A 1TYUA 4OM9A 3JX8A 3AK5A 2VFNA 1CLWA 3LJYA 4OJPA 2BM6A 3H09A 5JLVC 4V02C 3P4GA 2IOUG 1WXRA 2VFPA 1TYXA 4OJLA 1DABA 3PETA 1K4ZA 3SYJA 2VFMA 4OJ5A 5JMCB 2YUHA 2VFOA 1QA1A 2XC1A 1TYVA 1QA2A 4OJOA 2W7ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G0Y A;  2BM6 A;  2F3L A;  2BM7 A;  5JLV C;  3N90 A;  5JMC B;  4JRA C;  2BM4 A;  2BM5 A;  2J8I A;  2W7Z A; 
#chains in the Genus database with same CATH topology
 1O8D A;  1TSP A;  1KTW A;  3BH6 B;  1EA0 A;  3GQ7 A;  1QQ1 A;  4YEL A;  2V5I A;  5C1C A;  2BM4 A;  1IDK A;  2VFQ A;  3ML3 A;  4Z05 A;  3NB2 A;  3VSV A;  1OFM A;  2F3L A;  4XKW A;  3PSS A;  2VBK A;  2O0V A;  3N90 A;  2PEC A;  3VST A;  4OZY A;  2J8K A;  1JRG A;  4OJP A;  4OZZ A;  4I84 A;  4Z06 A;  1RMG A;  4XN3 A;  4XLC A;  1TYX A;  2NT9 A;  3PSZ A;  1QCX A;  1LM1 A;  4OJ5 A;  2NT6 A;  3B4N A;  1H80 A;  4NK8 A;  4XN0 A;  3SZE A;  3BH7 B;  4YEJ A;  3B90 A;  1LLW A;  3GRH A;  2NZM A;  4AVZ A;  2EWE A;  2XTW A;  4YFO A;  2NTQ A;  5C1E A;  1QRC A;  1RU4 A;  1BN8 A;  2X6W A;  4MXN A;  1O8K A;  2UVF A;  3TH0 A;  2VBE A;  1IDJ A;  3EQN A;  4XOT A;  2QY1 A;  3AK5 A;  1HF2 A;  1OFL A;  2QYU A;  2VFN A;  4U49 A;  1NHC A;  1KCC A;  3B8Y A;  3VSU A;  4W8R A;  5JLV C;  4YDT A;  1OFD A;  2IOU G;  1PLU A;  2X3H A;  2VFP A;  4OJL A;  3VMV A;  1GQ8 A;  1LLZ A;  1EE6 A;  2VBM A;  1QJV A;  2O1D A;  1K4Z A;  2QX3 A;  1OGM X;  2XT2 A;  4XR6 A;  4XON A;  2VJJ A;  4XLH A;  4EW9 A;  2NTP A;  2XTY A;  4YZX A;  4YZQ A;  1DBO A;  1VBL A;  2VFO A;  2XC1 A;  1QA1 A;  1X0C A;  1TYV A;  1HG8 A;  1PXZ A;  1DBG A;  3JUR A;  1OGO X;  1EZG A;  3GQ9 A;  2G0Y A;  4HWV A;  1PE9 A;  1KQ5 A;  3EQO A;  4W8T A;  2BX6 A;  4XLA A;  1KCD A;  4JRA C;  3LYC A;  1QRB A;  4YZ0 A;  2J8I A;  1K8F A;  1O88 A;  4C2L A;  1TYW A;  4OPW A;  1BHE A;  4OJ6 A;  2B0R A;  2BM7 A;  4PMH A;  1O8M A;  4OM9 A;  3JX8 A;  2INV A;  4MR0 A;  1IA5 A;  1CLW A;  3LJY A;  1OFE A;  2O04 A;  5DNS A;  3H09 A;  1O8H A;  4XOR A;  1CZF A;  3P4G A;  1O8L A;  4YCQ A;  3WWG A;  3ZPP A;  4XM3 A;  1RWR A;  2O17 A;  4W8S A;  2UVE A;  1WXR A;  1XG2 A;  4XMY A;  3SY2 A;  4XKV A;  4XOP A;  3FY3 A;  2PYH A;  2QXZ A;  2VJI A;  2IQ7 A;  4NK6 A;  2O0W A;  3SYJ A;  1IB4 A;  3VMW A;  1K5C A;  1JTA A;  2NSP A;  2YUH A;  4XNF A;  3NAW A;  4OJO A;  2INU A;  3LMW A;  1WMR A;  2W7Z A;  2XTX A;  4YEI A;  3N6Z A;  1O8E A;  2X6Y A;  3KRG A;  3DU1 X;  2NST A;  4YZA A;  1QA3 A;  3ZSC A;  3GQA A;  1L1I A;  2BM5 A;  4KH3 A;  4U4B A;  3SUC A;  3RIQ A;  1O8G A;  2X6X A;  1O8F A;  2NTB A;  4XLE A;  2QZA A;  1O8I A;  4Z03 A;  1TYU A;  2X85 A;  5AMV A;  4XL9 A;  4URR A;  2BM6 A;  3T9G A;  4V02 C;  4YC5 A;  4XQF A;  2O6W A;  4XLF A;  2XT4 A;  3GQ8 A;  1DAB A;  3SQV A;  3PET A;  3UW0 A;  1OOC A;  1O8J A;  2VFM A;  2Z8G A;  5JMC B;  1AIR A;  2ODL A;  2PYG A;  1QA2 A;  4W8Q A;  2BSP A; 
#chains in the Genus database with same CATH homology
 3BH7 B;  2G0Y A;  3N6Z A;  1KQ5 A;  1TSP A;  3BH6 B;  1QQ1 A;  2BX6 A;  2V5I A;  1QA3 A;  4JRA C;  2BM4 A;  1QRC A;  2BM5 A;  1QRB A;  2J8I A;  1K8F A;  2VFQ A;  3LYC A;  3ML3 A;  4KH3 A;  3TH0 A;  3RIQ A;  2F3L A;  3SZE A;  1TYW A;  4OPW A;  4OJ6 A;  2B0R A;  1HF2 A;  2BM7 A;  3N90 A;  1TYU A;  4OM9 A;  3JX8 A;  3AK5 A;  2VFN A;  1CLW A;  3LJY A;  4OJP A;  2BM6 A;  3H09 A;  5JLV C;  4V02 C;  3P4G A;  2IOU G;  1WXR A;  2VFP A;  1TYX A;  4OJL A;  1DAB A;  3PET A;  1K4Z A;  3SYJ A;  2VFM A;  4OJ5 A;  5JMC B;  2YUH A;  2VFO A;  1QA1 A;  2XC1 A;  1TYV A;  1QA2 A;  4OJO A;  2W7Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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