3N90A

The 1.7 angstrom resolution crystal structure of at2g44920, a pentapeptide repeat protein from arabidopsis thaliana thylakoid lumen.
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
145
structure length
145
Chain Sequence
b'AFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 1.7 Angstrom resolution crystal structure of AT2G44920, a pentapeptide repeat protein from Arabidopsis thaliana thylakoid lumen.
rcsb
molecule keywords Thylakoid lumenal 15 kDa protein 1, chloroplastic
source organism Arabidopsis thaliana
molecule tags Unknown function
total genus 67
structure length 145
sequence length 145
ec nomenclature
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3n90A00
5JLVC 2BM6A 2J8IA 3N90A 2F3LA 2G0YA 2W7ZA 4JRAC 5JMCB 2BM7A 2BM4A 2BM5A
chains in the Genus database with same CATH superfamily
3DU1X 1O8GA 4YFOA 4XLEA 2X6XA 1WXRA 3JURA 3VSVA 2V5IA 4OZYA 1JTAA 3PSZA 4YC5A 2EWEA 4W8TA 1RMGA 4YZQA 3VMWA 1KCDA 3GRHA 1JRGA 4U49A 4EW9A 1O8DA 4XKVA 3WWGA 1CLWA 4XN3A 3UW0A 4YEIA 4KH3A 4NK6A 2VFQA 3GQAA 4OJPA 4HWVA 1RU4A 2NT6A 2X85A 3GQ8A 2QZAA 4XLFA 1QRBA 2PYGA 2O0VA 3LJYA 4OJ5A 3SYJA 1IDKA 2O17A 2XTYA 1OOCA 4YEJA 2VFMA 2YUHA 3LMWA 1PLUA 1HF2A 2NSTA 5DNSA 1KTWA 3JX8A 2NZMA 3AK5A 2UVEA 1K4ZA 3N90A 1CZFA 1QA3A 1IDJA 1TYVA 1TYXA 2VFNA 3EQNA 1TYUA 1O8EA 2X3HA 4XMYA 4XONA 2BSPA 3VMVA 1H80A 1KCCA 2INUA 3ZSCA 3H09A 1OGMX 2Z8GA 2W7ZA 3SZEA 4XLCA 4MXNA 1EE6A 2NT9A 4URRA 4OJ6A 3ZPPA 3BH7B 1O88A 1QCXA 1DBOA 4JRAC 4W8QA 1OGOX 2BM7A 1DABA 4I84A 4OM9A 4XORA 1OFDA 2BM5A 2O1DA 4OPWA 3SUCA 3FY3A 1BHEA 1X0CA 2BM6A 2J8IA 1O8JA 4XLAA 2NSPA 2VJIA 3ML3A 5C1EA 1QA2A 1AIRA 1O8IA 1OFEA 4Z06A 3T9GA 2PYHA 4MR0A 3TH0A 3N6ZA 4V02C 2G0YA 1QJVA 2QXZA 1LM1A 2INVA 1O8MA 3LYCA 4YZAA 3NAWA 1OFLA 1OFMA 4XN0A 2O6WA 4XL9A 1K8FA 2NTQA 2F3LA 3VSTA 4XOPA 4PMHA 4AVZA 1IB4A 2IOUG 3B4NA 2UVFA 2XTWA 3BH6B 1QQ1A 2NTBA 1KQ5A 1O8LA 3GQ7A 1TSPA 3PETA 2XT4A 1EA0A 4W8SA 1IA5A 1O8FA 4OZZA 4YZXA 2NTPA 4OJOA 3KRGA 3PSSA 1K5CA 1O8KA 2X6YA 1O8HA 4YCQA 3B90A 1HG8A 2VBKA 4XOTA 2XC1A 1XG2A 4YELA 1PE9A 4XKWA 4XR6A 2BX6A 2IQ7A 4U4BA 4YZ0A 4W8RA 4OJLA 3P4GA 3GQ9A 2XTXA 1PXZA 3EQOA 2ODLA 2XT2A 1EZGA 2X6WA 3B8YA 1RWRA 2QX3A 4XM3A 5AMVA 1QA1A 2QY1A 1LLZA 4NK8A 4YDTA 4Z03A 5JMCB 3NB2A 3RIQA 5JLVC 3SQVA 2O04A 4XQFA 2B0RA 5C1CA 1DBGA 1QRCA 4Z05A 1BN8A 1TYWA 2BM4A 2VFPA 3SY2A 2VBEA 4XNFA 3VSUA 4C2LA 1NHCA 2J8KA 1L1IA 1WMRA 2PECA 1VBLA 2O0WA 2VJJA 1GQ8A 4XLHA 1LLWA 2QYUA 2VBMA 2VFOA
chains in the Genus database with same CATH topology
1DABA 3N6ZA 1K4ZA 3N90A 4V02C 1WXRA 2G0YA 2BX6A 2V5IA 3LYCA 1QA3A 4OJLA 1TYVA 2VFNA 1TYXA 3P4GA 1TYUA 1K8FA 3H09A 2F3LA 2W7ZA 3SZEA 1QA1A 2IOUG 5JMCB 1CLWA 4OJ6A 3BH7B 4KH3A 3BH6B 2VFQA 4OJPA 1QQ1A 3RIQA 5JLVC 2B0RA 1KQ5A 1QRBA 1QRCA 1TSPA 3LJYA 3PETA 1TYWA 2BM7A 4JRAC 2BM4A 2VFPA 4OJ5A 2BM5A 4OM9A 4OPWA 3SYJA 3TH0A 2VFMA 2BM6A 2J8IA 2YUHA 4OJOA 1QA2A 3ML3A 1HF2A 3JX8A 3AK5A 2XC1A 2VFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JLV C;  2BM6 A;  2J8I A;  3N90 A;  2F3L A;  2G0Y A;  2W7Z A;  4JRA C;  5JMC B;  2BM7 A;  2BM4 A;  2BM5 A; 
#chains in the Genus database with same CATH topology
 3DU1 X;  1O8G A;  4YFO A;  4XLE A;  2X6X A;  1WXR A;  3JUR A;  3VSV A;  2V5I A;  4OZY A;  1JTA A;  3PSZ A;  4YC5 A;  2EWE A;  4W8T A;  1RMG A;  4YZQ A;  3VMW A;  1KCD A;  3GRH A;  1JRG A;  4U49 A;  4EW9 A;  1O8D A;  4XKV A;  3WWG A;  1CLW A;  4XN3 A;  3UW0 A;  4YEI A;  4KH3 A;  4NK6 A;  2VFQ A;  3GQA A;  4OJP A;  4HWV A;  1RU4 A;  2NT6 A;  2X85 A;  3GQ8 A;  2QZA A;  4XLF A;  1QRB A;  2PYG A;  2O0V A;  3LJY A;  4OJ5 A;  3SYJ A;  1IDK A;  2O17 A;  2XTY A;  1OOC A;  4YEJ A;  2VFM A;  2YUH A;  3LMW A;  1PLU A;  1HF2 A;  2NST A;  5DNS A;  1KTW A;  3JX8 A;  2NZM A;  3AK5 A;  2UVE A;  1K4Z A;  3N90 A;  1CZF A;  1QA3 A;  1IDJ A;  1TYV A;  1TYX A;  2VFN A;  3EQN A;  1TYU A;  1O8E A;  2X3H A;  4XMY A;  4XON A;  2BSP A;  3VMV A;  1H80 A;  1KCC A;  2INU A;  3ZSC A;  3H09 A;  1OGM X;  2Z8G A;  2W7Z A;  3SZE A;  4XLC A;  4MXN A;  1EE6 A;  2NT9 A;  4URR A;  4OJ6 A;  3ZPP A;  3BH7 B;  1O88 A;  1QCX A;  1DBO A;  4JRA C;  4W8Q A;  1OGO X;  2BM7 A;  1DAB A;  4I84 A;  4OM9 A;  4XOR A;  1OFD A;  2BM5 A;  2O1D A;  4OPW A;  3SUC A;  3FY3 A;  1BHE A;  1X0C A;  2BM6 A;  2J8I A;  1O8J A;  4XLA A;  2NSP A;  2VJI A;  3ML3 A;  5C1E A;  1QA2 A;  1AIR A;  1O8I A;  1OFE A;  4Z06 A;  3T9G A;  2PYH A;  4MR0 A;  3TH0 A;  3N6Z A;  4V02 C;  2G0Y A;  1QJV A;  2QXZ A;  1LM1 A;  2INV A;  1O8M A;  3LYC A;  4YZA A;  3NAW A;  1OFL A;  1OFM A;  4XN0 A;  2O6W A;  4XL9 A;  1K8F A;  2NTQ A;  2F3L A;  3VST A;  4XOP A;  4PMH A;  4AVZ A;  1IB4 A;  2IOU G;  3B4N A;  2UVF A;  2XTW A;  3BH6 B;  1QQ1 A;  2NTB A;  1KQ5 A;  1O8L A;  3GQ7 A;  1TSP A;  3PET A;  2XT4 A;  1EA0 A;  4W8S A;  1IA5 A;  1O8F A;  4OZZ A;  4YZX A;  2NTP A;  4OJO A;  3KRG A;  3PSS A;  1K5C A;  1O8K A;  2X6Y A;  1O8H A;  4YCQ A;  3B90 A;  1HG8 A;  2VBK A;  4XOT A;  2XC1 A;  1XG2 A;  4YEL A;  1PE9 A;  4XKW A;  4XR6 A;  2BX6 A;  2IQ7 A;  4U4B A;  4YZ0 A;  4W8R A;  4OJL A;  3P4G A;  3GQ9 A;  2XTX A;  1PXZ A;  3EQO A;  2ODL A;  2XT2 A;  1EZG A;  2X6W A;  3B8Y A;  1RWR A;  2QX3 A;  4XM3 A;  5AMV A;  1QA1 A;  2QY1 A;  1LLZ A;  4NK8 A;  4YDT A;  4Z03 A;  5JMC B;  3NB2 A;  3RIQ A;  5JLV C;  3SQV A;  2O04 A;  4XQF A;  2B0R A;  5C1C A;  1DBG A;  1QRC A;  4Z05 A;  1BN8 A;  1TYW A;  2BM4 A;  2VFP A;  3SY2 A;  2VBE A;  4XNF A;  3VSU A;  4C2L A;  1NHC A;  2J8K A;  1L1I A;  1WMR A;  2PEC A;  1VBL A;  2O0W A;  2VJJ A;  1GQ8 A;  4XLH A;  1LLW A;  2QYU A;  2VBM A;  2VFO A; 
#chains in the Genus database with same CATH homology
 1DAB A;  3N6Z A;  1K4Z A;  3N90 A;  4V02 C;  1WXR A;  2G0Y A;  2BX6 A;  2V5I A;  3LYC A;  1QA3 A;  4OJL A;  1TYV A;  2VFN A;  1TYX A;  3P4G A;  1TYU A;  1K8F A;  3H09 A;  2F3L A;  2W7Z A;  3SZE A;  1QA1 A;  2IOU G;  5JMC B;  1CLW A;  4OJ6 A;  3BH7 B;  4KH3 A;  3BH6 B;  2VFQ A;  4OJP A;  1QQ1 A;  3RIQ A;  5JLV C;  2B0R A;  1KQ5 A;  1QRB A;  1QRC A;  1TSP A;  3LJY A;  3PET A;  1TYW A;  2BM7 A;  4JRA C;  2BM4 A;  2VFP A;  4OJ5 A;  2BM5 A;  4OM9 A;  4OPW A;  3SYJ A;  3TH0 A;  2VFM A;  2BM6 A;  2J8I A;  2YUH A;  4OJO A;  1QA2 A;  3ML3 A;  1HF2 A;  3JX8 A;  3AK5 A;  2XC1 A;  2VFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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