4OPWA

Crystal structure of a putative adhesin (parmer_02777) from parabacteroides merdae atcc 43184 at 1.75 a resolution
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
241
structure length
241
Chain Sequence
b'GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLKAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein
publication title Crystal structure of a putative adhesin (PARMER_02777) from Parabacteroides merdae ATCC 43184 at 1.75 A resolution
rcsb
source organism Parabacteroides merdae atcc 43184
molecule tags Cell adhesion
total genus 87
structure length 241
sequence length 241
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10988 DUF2807 Putative auto-transporter adhesin, head GIN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.120 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 4opwA00
3PETA 3LYCA 4OPWA 3LJYA 3JX8A
chains in the Genus database with same CATH superfamily
1O8LA 1KCCA 1TYWA 1O8EA 4XKVA 5JMCB 1O8HA 3B90A 3JURA 2NSPA 2UVEA 3WWGA 2XT2A 2BSPA 2NTPA 4V02C 1EE6A 2QY1A 1HG8A 1O8KA 2VJJA 2VBKA 1BHEA 4OZZA 3GQ8A 2V5IA 5C1EA 1AIRA 1TYXA 1KTWA 3TH0A 2VFOA 4OPWA 2O1DA 1QRCA 2O17A 3GQ7A 1HF2A 1RMGA 2B0RA 2INUA 2J8IA 4YEIA 4XQFA 1TSPA 3PSZA 2IOUG 2X6WA 2XTWA 3JX8A 2PECA 5DNSA 5JLVC 3EQOA 4EW9A 3SZEA 3VSVA 3FY3A 3N90A 1QQ1A 2QYUA 3LYCA 1LLZA 4MXNA 1CZFA 3P4GA 3PSSA 1OOCA 4W8RA 3AK5A 3NAWA 3ZPPA 4XN0A 2BM7A 3SY2A 4OJOA 4XLHA 3SUCA 1PLUA 4YFOA 2BM5A 2EWEA 1TYVA 3RIQA 4YELA 4OJLA 1OGOX 2PYHA 1O88A 2J8KA 2VFMA 4KH3A 1QA2A 1WMRA 1WXRA 2NT6A 4XMYA 1PXZA 3PETA 1LLWA 2QX3A 4XM3A 2BM6A 3N6ZA 1VBLA 2F3LA 1O8IA 1QCXA 4PMHA 4Z06A 3GQ9A 4NK8A 3VMWA 1O8MA 4AVZA 3ML3A 4HWVA 4YEJA 1JTAA 4XL9A 3VSUA 2O0VA 4XNFA 4XKWA 4OJPA 1IA5A 2X85A 2XTYA 3VSTA 3LJYA 1OGMX 1DBGA 3BH7B 4MR0A 1KCDA 1K8FA 1OFDA 2QZAA 2X3HA 1DBOA 2VFNA 1QRBA 1IDKA 4W8TA 4XLEA 3DU1X 4Z03A 4XLCA 2NT9A 3NB2A 3SYJA 4YZAA 2VFQA 4I84A 2VBMA 4YCQA 4NK6A 2QXZA 2PYGA 3B4NA 2NTQA 3T9GA 1O8JA 1O8FA 2O04A 4W8QA 4XLFA 4YZ0A 4XONA 4YDTA 1O8DA 2G0YA 3LMWA 1EZGA 1PE9A 4XR6A 1K5CA 4OZYA 3KRGA 2NTBA 2VJIA 1O8GA 1LM1A 1RU4A 4YC5A 1IB4A 4Z05A 1K4ZA 1GQ8A 2O6WA 2Z8GA 2NZMA 4XORA 4YZQA 3VMVA 1L1IA 4XLAA 1XG2A 4OJ6A 1OFMA 1CLWA 3GRHA 2INVA 2O0WA 2X6YA 2ODLA 3UW0A 4U49A 4OJ5A 1OFLA 5C1CA 1QA3A 1TYUA 2NSTA 1RWRA 1OFEA 2IQ7A 2XT4A 3ZSCA 1BN8A 4XN3A 2YUHA 1X0CA 4JRAC 2BM4A 4C2LA 4U4BA 4URRA 1H80A 2BX6A 1EA0A 2W7ZA 2UVFA 4XOPA 1KQ5A 2VBEA 2XTXA 4YZXA 1NHCA 3B8YA 1IDJA 1JRGA 3EQNA 4OM9A 3H09A 3GQAA 2VFPA 5AMVA 2XC1A 3SQVA 3BH6B 1QJVA 4W8SA 4XOTA 1DABA 1QA1A 2X6XA
chains in the Genus database with same CATH topology
3LYCA 3LJYA 3BH7B 3P4GA 1TYWA 5JMCB 1K4ZA 1K8FA 2VFNA 3AK5A 1QRBA 4V02C 2BM7A 4OJ6A 4OJOA 1CLWA 2BM5A 3SYJA 1TYVA 3RIQA 2VFQA 4OJLA 3TH0A 2V5IA 2VFMA 4KH3A 1TYXA 4OJ5A 1QA2A 1WXRA 1QA3A 2VFOA 1TYUA 3PETA 4OPWA 2YUHA 1QRCA 4JRAC 2BM4A 2BM6A 1HF2A 3N6ZA 2B0RA 2BX6A 2F3LA 2J8IA 2W7ZA 1KQ5A 2G0YA 3ML3A 1TSPA 2IOUG 4OM9A 3JX8A 3H09A 5JLVC 2VFPA 2XC1A 3BH6B 3SZEA 1DABA 3N90A 1QA1A 1QQ1A 4OJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PET A;  3LYC A;  4OPW A;  3LJY A;  3JX8 A; 
#chains in the Genus database with same CATH topology
 1O8L A;  1KCC A;  1TYW A;  1O8E A;  4XKV A;  5JMC B;  1O8H A;  3B90 A;  3JUR A;  2NSP A;  2UVE A;  3WWG A;  2XT2 A;  2BSP A;  2NTP A;  4V02 C;  1EE6 A;  2QY1 A;  1HG8 A;  1O8K A;  2VJJ A;  2VBK A;  1BHE A;  4OZZ A;  3GQ8 A;  2V5I A;  5C1E A;  1AIR A;  1TYX A;  1KTW A;  3TH0 A;  2VFO A;  4OPW A;  2O1D A;  1QRC A;  2O17 A;  3GQ7 A;  1HF2 A;  1RMG A;  2B0R A;  2INU A;  2J8I A;  4YEI A;  4XQF A;  1TSP A;  3PSZ A;  2IOU G;  2X6W A;  2XTW A;  3JX8 A;  2PEC A;  5DNS A;  5JLV C;  3EQO A;  4EW9 A;  3SZE A;  3VSV A;  3FY3 A;  3N90 A;  1QQ1 A;  2QYU A;  3LYC A;  1LLZ A;  4MXN A;  1CZF A;  3P4G A;  3PSS A;  1OOC A;  4W8R A;  3AK5 A;  3NAW A;  3ZPP A;  4XN0 A;  2BM7 A;  3SY2 A;  4OJO A;  4XLH A;  3SUC A;  1PLU A;  4YFO A;  2BM5 A;  2EWE A;  1TYV A;  3RIQ A;  4YEL A;  4OJL A;  1OGO X;  2PYH A;  1O88 A;  2J8K A;  2VFM A;  4KH3 A;  1QA2 A;  1WMR A;  1WXR A;  2NT6 A;  4XMY A;  1PXZ A;  3PET A;  1LLW A;  2QX3 A;  4XM3 A;  2BM6 A;  3N6Z A;  1VBL A;  2F3L A;  1O8I A;  1QCX A;  4PMH A;  4Z06 A;  3GQ9 A;  4NK8 A;  3VMW A;  1O8M A;  4AVZ A;  3ML3 A;  4HWV A;  4YEJ A;  1JTA A;  4XL9 A;  3VSU A;  2O0V A;  4XNF A;  4XKW A;  4OJP A;  1IA5 A;  2X85 A;  2XTY A;  3VST A;  3LJY A;  1OGM X;  1DBG A;  3BH7 B;  4MR0 A;  1KCD A;  1K8F A;  1OFD A;  2QZA A;  2X3H A;  1DBO A;  2VFN A;  1QRB A;  1IDK A;  4W8T A;  4XLE A;  3DU1 X;  4Z03 A;  4XLC A;  2NT9 A;  3NB2 A;  3SYJ A;  4YZA A;  2VFQ A;  4I84 A;  2VBM A;  4YCQ A;  4NK6 A;  2QXZ A;  2PYG A;  3B4N A;  2NTQ A;  3T9G A;  1O8J A;  1O8F A;  2O04 A;  4W8Q A;  4XLF A;  4YZ0 A;  4XON A;  4YDT A;  1O8D A;  2G0Y A;  3LMW A;  1EZG A;  1PE9 A;  4XR6 A;  1K5C A;  4OZY A;  3KRG A;  2NTB A;  2VJI A;  1O8G A;  1LM1 A;  1RU4 A;  4YC5 A;  1IB4 A;  4Z05 A;  1K4Z A;  1GQ8 A;  2O6W A;  2Z8G A;  2NZM A;  4XOR A;  4YZQ A;  3VMV A;  1L1I A;  4XLA A;  1XG2 A;  4OJ6 A;  1OFM A;  1CLW A;  3GRH A;  2INV A;  2O0W A;  2X6Y A;  2ODL A;  3UW0 A;  4U49 A;  4OJ5 A;  1OFL A;  5C1C A;  1QA3 A;  1TYU A;  2NST A;  1RWR A;  1OFE A;  2IQ7 A;  2XT4 A;  3ZSC A;  1BN8 A;  4XN3 A;  2YUH A;  1X0C A;  4JRA C;  2BM4 A;  4C2L A;  4U4B A;  4URR A;  1H80 A;  2BX6 A;  1EA0 A;  2W7Z A;  2UVF A;  4XOP A;  1KQ5 A;  2VBE A;  2XTX A;  4YZX A;  1NHC A;  3B8Y A;  1IDJ A;  1JRG A;  3EQN A;  4OM9 A;  3H09 A;  3GQA A;  2VFP A;  5AMV A;  2XC1 A;  3SQV A;  3BH6 B;  1QJV A;  4W8S A;  4XOT A;  1DAB A;  1QA1 A;  2X6X A; 
#chains in the Genus database with same CATH homology
 3LYC A;  3LJY A;  3BH7 B;  3P4G A;  1TYW A;  5JMC B;  1K4Z A;  1K8F A;  2VFN A;  3AK5 A;  1QRB A;  4V02 C;  2BM7 A;  4OJ6 A;  4OJO A;  1CLW A;  2BM5 A;  3SYJ A;  1TYV A;  3RIQ A;  2VFQ A;  4OJL A;  3TH0 A;  2V5I A;  2VFM A;  4KH3 A;  1TYX A;  4OJ5 A;  1QA2 A;  1WXR A;  1QA3 A;  2VFO A;  1TYU A;  3PET A;  4OPW A;  2YUH A;  1QRC A;  4JRA C;  2BM4 A;  2BM6 A;  1HF2 A;  3N6Z A;  2B0R A;  2BX6 A;  2F3L A;  2J8I A;  2W7Z A;  1KQ5 A;  2G0Y A;  3ML3 A;  1TSP A;  2IOU G;  4OM9 A;  3JX8 A;  3H09 A;  5JLV C;  2VFP A;  2XC1 A;  3BH6 B;  3SZE A;  1DAB A;  3N90 A;  1QA1 A;  1QQ1 A;  4OJP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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