4OPWA

Crystal structure of a putative adhesin (parmer_02777) from parabacteroides merdae atcc 43184 at 1.75 a resolution
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
241
structure length
241
Chain Sequence
GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLKAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein
publication title Crystal structure of a putative adhesin (PARMER_02777) from Parabacteroides merdae ATCC 43184 at 1.75 A resolution
rcsb
source organism Parabacteroides merdae atcc 43184
molecule tags Cell adhesion
total genus 87
structure length 241
sequence length 241
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10988 DUF2807 Putative auto-transporter adhesin, head GIN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.120 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 4opwA00
4OPWA 3PETA 3JX8A 3LYCA 3LJYA
chains in the Genus database with same CATH superfamily
1OFEA 4XR6A 1RMGA 4YZQA 1QRCA 1O88A 2XC1A 3H09A 1EZGA 3NAWA 2J8IA 3GQAA 1WXRA 2NT6A 1BN8A 1JRGA 3LJYA 1DABA 2F3LA 4YZXA 4XLCA 4XM3A 3NB2A 3BH7B 2NTBA 4XONA 2Z8GA 1O8IA 3LMWA 2NSPA 1LLWA 4OZZA 4OJ5A 4V02C 1RU4A 4YFOA 2BX6A 3SQVA 2ODLA 2X6WA 2XTXA 3KRGA 4OJLA 4Z05A 3EQOA 1PXZA 2QYUA 4XL9A 3VMVA 4KH3A 3EQNA 4MXNA 3B4NA 4EW9A 2XTYA 1XG2A 3N90A 1O8MA 4U4BA 2BSPA 4URRA 5C1EA 2UVEA 4OJOA 2O6WA 3P4GA 4XKWA 4I84A 2XT4A 1QJVA 4NK8A 1QQ1A 4JRAC 3PSSA 1OFMA 4W8TA 3B8YA 4XLFA 4W8QA 4YEIA 4W8RA 4OM9A 1L1IA 4Z06A 1DBGA 2QZAA 2VFMA 3VSVA 2VFPA 3ML3A 2QXZA 1BHEA 4XN3A 3GRHA 2PYHA 1KTWA 4OPWA 2X3HA 3SY2A 1GQ8A 2BM5A 3ZPPA 4YC5A 1TYXA 1WMRA 5C1CA 1QA2A 3GQ7A 1VBLA 1O8GA 2PECA 5AMVA 2BM7A 4XQFA 4OJ6A 1PLUA 2NTPA 2O17A 4XLHA 1CZFA 4U49A 3JURA 1PE9A 2INUA 2NTQA 2O0VA 2V5IA 3SUCA 1O8LA 2QX3A 1K5CA 1O8KA 1K8FA 3VMWA 3DU1X 3B90A 3GQ8A 2X6XA 2VJIA 4C2LA 2VBKA 2XTWA 3FY3A 1OFLA 3SZEA 1OOCA 2INVA 3PETA 3VSTA 4YCQA 1IDJA 4XORA 1EA0A 2VFQA 1IB4A 5DNSA 3BH6B 4XLAA 1LLZA 2X6YA 4YEJA 5JLVC 2B0RA 1QRBA 4NK6A 1O8JA 2NZMA 4XKVA 4OJPA 3SYJA 1IDKA 2O0WA 4XNFA 4YZAA 4HWVA 1TSPA 3VSUA 4YZ0A 1AIRA 1RWRA 3PSZA 3LYCA 2VFOA 4Z03A 4W8SA 2VBEA 4YDTA 3UW0A 2IOUG 2VBMA 2XT2A 1OGMX 2BM6A 3N6ZA 4MR0A 3RIQA 1KCCA 4XMYA 2QY1A 2J8KA 2W7ZA 2O1DA 4XOPA 1K4ZA 1KQ5A 1HG8A 4XOTA 3AK5A 2UVFA 2IQ7A 2PYGA 3JX8A 2X85A 4AVZA 4YELA 2BM4A 4OZYA 1LM1A 1DBOA 2NSTA 3T9GA 1KCDA 1O8EA 3WWGA 3GQ9A 5JMCB 1O8HA 4XN0A 1O8FA 1OFDA 2YUHA 2O04A 3TH0A 1OGOX 1H80A 1O8DA 1TYUA 1HF2A 1CLWA 4PMHA 2G0YA 1X0CA 4XLEA 1EE6A 1IA5A 1JTAA 1TYWA 1QCXA 1TYVA 1QA3A 1QA1A 3ZSCA 1NHCA 2NT9A 2VJJA 2VFNA 2EWEA
chains in the Genus database with same CATH topology
3P4GA 2BM6A 3N6ZA 3RIQA 1QRCA 1QQ1A 4JRAC 2XC1A 3H09A 2W7ZA 2J8IA 1WXRA 1K4ZA 1KQ5A 3SZEA 3LJYA 4OM9A 1DABA 3AK5A 2F3LA 3PETA 2VFMA 3JX8A 2VFPA 3ML3A 3BH7B 2VFQA 2BM4A 4OJ5A 4V02C 3BH6B 4OPWA 2BX6A 2BM5A 5JLVC 2B0RA 1QRBA 1TYXA 5JMCB 1QA2A 2YUHA 3TH0A 1TYUA 4OJPA 3SYJA 2BM7A 1HF2A 1CLWA 4OJ6A 1TSPA 2G0YA 4KH3A 1TYWA 2V5IA 1TYVA 4OJOA 1QA3A 1QA1A 3LYCA 3N90A 2VFOA 1K8FA 2VFNA 4OJLA 2IOUG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OPW A;  3PET A;  3JX8 A;  3LYC A;  3LJY A; 
#chains in the Genus database with same CATH topology
 1OFE A;  4XR6 A;  1RMG A;  4YZQ A;  1QRC A;  1O88 A;  2XC1 A;  3H09 A;  1EZG A;  3NAW A;  2J8I A;  3GQA A;  1WXR A;  2NT6 A;  1BN8 A;  1JRG A;  3LJY A;  1DAB A;  2F3L A;  4YZX A;  4XLC A;  4XM3 A;  3NB2 A;  3BH7 B;  2NTB A;  4XON A;  2Z8G A;  1O8I A;  3LMW A;  2NSP A;  1LLW A;  4OZZ A;  4OJ5 A;  4V02 C;  1RU4 A;  4YFO A;  2BX6 A;  3SQV A;  2ODL A;  2X6W A;  2XTX A;  3KRG A;  4OJL A;  4Z05 A;  3EQO A;  1PXZ A;  2QYU A;  4XL9 A;  3VMV A;  4KH3 A;  3EQN A;  4MXN A;  3B4N A;  4EW9 A;  2XTY A;  1XG2 A;  3N90 A;  1O8M A;  4U4B A;  2BSP A;  4URR A;  5C1E A;  2UVE A;  4OJO A;  2O6W A;  3P4G A;  4XKW A;  4I84 A;  2XT4 A;  1QJV A;  4NK8 A;  1QQ1 A;  4JRA C;  3PSS A;  1OFM A;  4W8T A;  3B8Y A;  4XLF A;  4W8Q A;  4YEI A;  4W8R A;  4OM9 A;  1L1I A;  4Z06 A;  1DBG A;  2QZA A;  2VFM A;  3VSV A;  2VFP A;  3ML3 A;  2QXZ A;  1BHE A;  4XN3 A;  3GRH A;  2PYH A;  1KTW A;  4OPW A;  2X3H A;  3SY2 A;  1GQ8 A;  2BM5 A;  3ZPP A;  4YC5 A;  1TYX A;  1WMR A;  5C1C A;  1QA2 A;  3GQ7 A;  1VBL A;  1O8G A;  2PEC A;  5AMV A;  2BM7 A;  4XQF A;  4OJ6 A;  1PLU A;  2NTP A;  2O17 A;  4XLH A;  1CZF A;  4U49 A;  3JUR A;  1PE9 A;  2INU A;  2NTQ A;  2O0V A;  2V5I A;  3SUC A;  1O8L A;  2QX3 A;  1K5C A;  1O8K A;  1K8F A;  3VMW A;  3DU1 X;  3B90 A;  3GQ8 A;  2X6X A;  2VJI A;  4C2L A;  2VBK A;  2XTW A;  3FY3 A;  1OFL A;  3SZE A;  1OOC A;  2INV A;  3PET A;  3VST A;  4YCQ A;  1IDJ A;  4XOR A;  1EA0 A;  2VFQ A;  1IB4 A;  5DNS A;  3BH6 B;  4XLA A;  1LLZ A;  2X6Y A;  4YEJ A;  5JLV C;  2B0R A;  1QRB A;  4NK6 A;  1O8J A;  2NZM A;  4XKV A;  4OJP A;  3SYJ A;  1IDK A;  2O0W A;  4XNF A;  4YZA A;  4HWV A;  1TSP A;  3VSU A;  4YZ0 A;  1AIR A;  1RWR A;  3PSZ A;  3LYC A;  2VFO A;  4Z03 A;  4W8S A;  2VBE A;  4YDT A;  3UW0 A;  2IOU G;  2VBM A;  2XT2 A;  1OGM X;  2BM6 A;  3N6Z A;  4MR0 A;  3RIQ A;  1KCC A;  4XMY A;  2QY1 A;  2J8K A;  2W7Z A;  2O1D A;  4XOP A;  1K4Z A;  1KQ5 A;  1HG8 A;  4XOT A;  3AK5 A;  2UVF A;  2IQ7 A;  2PYG A;  3JX8 A;  2X85 A;  4AVZ A;  4YEL A;  2BM4 A;  4OZY A;  1LM1 A;  1DBO A;  2NST A;  3T9G A;  1KCD A;  1O8E A;  3WWG A;  3GQ9 A;  5JMC B;  1O8H A;  4XN0 A;  1O8F A;  1OFD A;  2YUH A;  2O04 A;  3TH0 A;  1OGO X;  1H80 A;  1O8D A;  1TYU A;  1HF2 A;  1CLW A;  4PMH A;  2G0Y A;  1X0C A;  4XLE A;  1EE6 A;  1IA5 A;  1JTA A;  1TYW A;  1QCX A;  1TYV A;  1QA3 A;  1QA1 A;  3ZSC A;  1NHC A;  2NT9 A;  2VJJ A;  2VFN A;  2EWE A; 
#chains in the Genus database with same CATH homology
 3P4G A;  2BM6 A;  3N6Z A;  3RIQ A;  1QRC A;  1QQ1 A;  4JRA C;  2XC1 A;  3H09 A;  2W7Z A;  2J8I A;  1WXR A;  1K4Z A;  1KQ5 A;  3SZE A;  3LJY A;  4OM9 A;  1DAB A;  3AK5 A;  2F3L A;  3PET A;  2VFM A;  3JX8 A;  2VFP A;  3ML3 A;  3BH7 B;  2VFQ A;  2BM4 A;  4OJ5 A;  4V02 C;  3BH6 B;  4OPW A;  2BX6 A;  2BM5 A;  5JLV C;  2B0R A;  1QRB A;  1TYX A;  5JMC B;  1QA2 A;  2YUH A;  3TH0 A;  1TYU A;  4OJP A;  3SYJ A;  2BM7 A;  1HF2 A;  1CLW A;  4OJ6 A;  1TSP A;  2G0Y A;  4KH3 A;  1TYW A;  2V5I A;  1TYV A;  4OJO A;  1QA3 A;  1QA1 A;  3LYC A;  3N90 A;  2VFO A;  1K8F A;  2VFN A;  4OJL A;  2IOU G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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