1QA3A

Tailspike protein, mutant a334i
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSIQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/receptor
molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 185
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa3A00
1QRCA 2VFPA 2XC1A 1QQ1A 1TYVA 1TSPA 2IOUG 2V5IA 1QRBA 1TYWA 2VFQA 1DABA 1CLWA 3RIQA 4OM9A 3AK5A 1TYUA 1QA1A 1QA3A 2VFNA 1QA2A 4KH3A 3SYJA 3ML3A 2VFOA 1TYXA 3TH0A 3SZEA 2VFMA 3H09A 1WXRA
chains in the Genus database with same CATH superfamily
3KRGA 1O8MA 4XLEA 1DBGA 2XT4A 3B8YA 1QQ1A 2X6XA 1H80A 4XOPA 2NT6A 3BH7B 3PETA 1CLWA 2B0RA 1L1IA 2NSTA 3SQVA 3P4GA 3AK5A 3GQAA 2PECA 2YUHA 3VSUA 3GQ9A 1HF2A 1IDKA 1OFLA 2UVEA 2QZAA 1NHCA 1EE6A 4YZXA 2J8KA 3VMVA 4YZQA 2VFOA 3N6ZA 3T9GA 1O8JA 2QY1A 1K4ZA 4W8TA 2XTXA 3H09A 4Z03A 5DNSA 5AMVA 2BM6A 2G0YA 5JMCB 2ODLA 1KCDA 1O8IA 2VBEA 2X6WA 3EQNA 4XMYA 2NSPA 5C1EA 1QRCA 2NTQA 2VFPA 4YDTA 3WWGA 1EA0A 1OFDA 4XL9A 4C2LA 1TSPA 4XQFA 2W7ZA 4U4BA 3VMWA 3JURA 2O1DA 1TYWA 2QXZA 4NK8A 4AVZA 4EW9A 3VSTA 2VFQA 1BN8A 2BM7A 3ZSCA 4YZ0A 1PXZA 2BSPA 3NAWA 4OZZA 1TYUA 1JTAA 4XNFA 1DBOA 2O17A 1OOCA 2Z8GA 1EZGA 1O8GA 3PSSA 2IQ7A 1IA5A 3GQ7A 4KH3A 4W8SA 4YEJA 1RU4A 4XKVA 4U49A 4YFOA 3TH0A 2O0WA 3PSZA 1X0CA 4OJ6A 2UVFA 3LJYA 3BH6B 4HWVA 4Z05A 1BHEA 2INUA 3SY2A 1WXRA 5JLVC 3JX8A 1GQ8A 1RMGA 1OFEA 4XLHA 4XONA 2PYGA 4OJLA 4XLAA 4PMHA 2NTBA 2XT2A 3ZPPA 2EWEA 1HG8A 3B4NA 2IOUG 1AIRA 4XORA 1XG2A 1KTWA 3LYCA 4YCQA 4OPWA 4XN3A 4OJOA 1QJVA 4OZYA 1KQ5A 3RIQA 4OM9A 2NT9A 2BM5A 3B90A 1PLUA 1VBLA 1RWRA 1IB4A 2J8IA 1O8KA 2O0VA 4XKWA 2QX3A 3SYJA 3ML3A 4NK6A 1TYXA 4XLFA 1O88A 2VFMA 2VJIA 2PYHA 2X6YA 4XM3A 4XR6A 1LM1A 3VSVA 2BM4A 1O8EA 4W8RA 4XN0A 2O6WA 2XTWA 3GRHA 1LLWA 2X85A 4MXNA 4V02C 2VBMA 4OJPA 2NTPA 4W8QA 2XC1A 3DU1X 4YC5A 1TYVA 2V5IA 2XTYA 3NB2A 1QRBA 4I84A 1IDJA 2BX6A 2F3LA 4JRAC 4YZAA 1DABA 4YELA 4OJ5A 1JRGA 2INVA 2O04A 4MR0A 1LLZA 1QA1A 4YEIA 1QCXA 1KCCA 1QA3A 4Z06A 2NZMA 1O8DA 1O8LA 1K8FA 1PE9A 2VFNA 4XLCA 1QA2A 1WMRA 3LMWA 3EQOA 3UW0A 3SZEA 2QYUA 4XOTA 1K5CA 1OGMX 2VBKA 3GQ8A 1OFMA 3SUCA 2X3HA 1OGOX 2VJJA 3FY3A 4URRA 5C1CA 1CZFA 3N90A 1O8HA 1O8FA
chains in the Genus database with same CATH topology
4OJLA 1QRCA 2VFPA 4OJPA 4V02C 2G0YA 2XC1A 1QQ1A 1TYVA 1TSPA 2IOUG 2V5IA 1QRBA 2W7ZA 3LYCA 1TYWA 4OPWA 2BX6A 3BH7B 2F3LA 3PETA 4OJOA 4JRAC 2VFQA 1DABA 1CLWA 2B0RA 1KQ5A 2BM7A 4OJ5A 4OM9A 3RIQA 3P4GA 3AK5A 2BM5A 2YUHA 1TYUA 1QA1A 1HF2A 1QA3A 2J8IA 1K8FA 2VFNA 1QA2A 4KH3A 3SYJA 2VFOA 3ML3A 3N6ZA 1TYXA 3TH0A 3SZEA 2VFMA 5JMCB 1K4ZA 4OJ6A 3LJYA 3BH6B 3H09A 1WXRA 2BM6A 5JLVC 2BM4A 3N90A 3JX8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRC A;  2VFP A;  2XC1 A;  1QQ1 A;  1TYV A;  1TSP A;  2IOU G;  2V5I A;  1QRB A;  1TYW A;  2VFQ A;  1DAB A;  1CLW A;  3RIQ A;  4OM9 A;  3AK5 A;  1TYU A;  1QA1 A;  1QA3 A;  2VFN A;  1QA2 A;  4KH3 A;  3SYJ A;  3ML3 A;  2VFO A;  1TYX A;  3TH0 A;  3SZE A;  2VFM A;  3H09 A;  1WXR A; 
#chains in the Genus database with same CATH topology
 3KRG A;  1O8M A;  4XLE A;  1DBG A;  2XT4 A;  3B8Y A;  1QQ1 A;  2X6X A;  1H80 A;  4XOP A;  2NT6 A;  3BH7 B;  3PET A;  1CLW A;  2B0R A;  1L1I A;  2NST A;  3SQV A;  3P4G A;  3AK5 A;  3GQA A;  2PEC A;  2YUH A;  3VSU A;  3GQ9 A;  1HF2 A;  1IDK A;  1OFL A;  2UVE A;  2QZA A;  1NHC A;  1EE6 A;  4YZX A;  2J8K A;  3VMV A;  4YZQ A;  2VFO A;  3N6Z A;  3T9G A;  1O8J A;  2QY1 A;  1K4Z A;  4W8T A;  2XTX A;  3H09 A;  4Z03 A;  5DNS A;  5AMV A;  2BM6 A;  2G0Y A;  5JMC B;  2ODL A;  1KCD A;  1O8I A;  2VBE A;  2X6W A;  3EQN A;  4XMY A;  2NSP A;  5C1E A;  1QRC A;  2NTQ A;  2VFP A;  4YDT A;  3WWG A;  1EA0 A;  1OFD A;  4XL9 A;  4C2L A;  1TSP A;  4XQF A;  2W7Z A;  4U4B A;  3VMW A;  3JUR A;  2O1D A;  1TYW A;  2QXZ A;  4NK8 A;  4AVZ A;  4EW9 A;  3VST A;  2VFQ A;  1BN8 A;  2BM7 A;  3ZSC A;  4YZ0 A;  1PXZ A;  2BSP A;  3NAW A;  4OZZ A;  1TYU A;  1JTA A;  4XNF A;  1DBO A;  2O17 A;  1OOC A;  2Z8G A;  1EZG A;  1O8G A;  3PSS A;  2IQ7 A;  1IA5 A;  3GQ7 A;  4KH3 A;  4W8S A;  4YEJ A;  1RU4 A;  4XKV A;  4U49 A;  4YFO A;  3TH0 A;  2O0W A;  3PSZ A;  1X0C A;  4OJ6 A;  2UVF A;  3LJY A;  3BH6 B;  4HWV A;  4Z05 A;  1BHE A;  2INU A;  3SY2 A;  1WXR A;  5JLV C;  3JX8 A;  1GQ8 A;  1RMG A;  1OFE A;  4XLH A;  4XON A;  2PYG A;  4OJL A;  4XLA A;  4PMH A;  2NTB A;  2XT2 A;  3ZPP A;  2EWE A;  1HG8 A;  3B4N A;  2IOU G;  1AIR A;  4XOR A;  1XG2 A;  1KTW A;  3LYC A;  4YCQ A;  4OPW A;  4XN3 A;  4OJO A;  1QJV A;  4OZY A;  1KQ5 A;  3RIQ A;  4OM9 A;  2NT9 A;  2BM5 A;  3B90 A;  1PLU A;  1VBL A;  1RWR A;  1IB4 A;  2J8I A;  1O8K A;  2O0V A;  4XKW A;  2QX3 A;  3SYJ A;  3ML3 A;  4NK6 A;  1TYX A;  4XLF A;  1O88 A;  2VFM A;  2VJI A;  2PYH A;  2X6Y A;  4XM3 A;  4XR6 A;  1LM1 A;  3VSV A;  2BM4 A;  1O8E A;  4W8R A;  4XN0 A;  2O6W A;  2XTW A;  3GRH A;  1LLW A;  2X85 A;  4MXN A;  4V02 C;  2VBM A;  4OJP A;  2NTP A;  4W8Q A;  2XC1 A;  3DU1 X;  4YC5 A;  1TYV A;  2V5I A;  2XTY A;  3NB2 A;  1QRB A;  4I84 A;  1IDJ A;  2BX6 A;  2F3L A;  4JRA C;  4YZA A;  1DAB A;  4YEL A;  4OJ5 A;  1JRG A;  2INV A;  2O04 A;  4MR0 A;  1LLZ A;  1QA1 A;  4YEI A;  1QCX A;  1KCC A;  1QA3 A;  4Z06 A;  2NZM A;  1O8D A;  1O8L A;  1K8F A;  1PE9 A;  2VFN A;  4XLC A;  1QA2 A;  1WMR A;  3LMW A;  3EQO A;  3UW0 A;  3SZE A;  2QYU A;  4XOT A;  1K5C A;  1OGM X;  2VBK A;  3GQ8 A;  1OFM A;  3SUC A;  2X3H A;  1OGO X;  2VJJ A;  3FY3 A;  4URR A;  5C1C A;  1CZF A;  3N90 A;  1O8H A;  1O8F A; 
#chains in the Genus database with same CATH homology
 4OJL A;  1QRC A;  2VFP A;  4OJP A;  4V02 C;  2G0Y A;  2XC1 A;  1QQ1 A;  1TYV A;  1TSP A;  2IOU G;  2V5I A;  1QRB A;  2W7Z A;  3LYC A;  1TYW A;  4OPW A;  2BX6 A;  3BH7 B;  2F3L A;  3PET A;  4OJO A;  4JRA C;  2VFQ A;  1DAB A;  1CLW A;  2B0R A;  1KQ5 A;  2BM7 A;  4OJ5 A;  4OM9 A;  3RIQ A;  3P4G A;  3AK5 A;  2BM5 A;  2YUH A;  1TYU A;  1QA1 A;  1HF2 A;  1QA3 A;  2J8I A;  1K8F A;  2VFN A;  1QA2 A;  4KH3 A;  3SYJ A;  2VFO A;  3ML3 A;  3N6Z A;  1TYX A;  3TH0 A;  3SZE A;  2VFM A;  5JMC B;  1K4Z A;  4OJ6 A;  3LJY A;  3BH6 B;  3H09 A;  1WXR A;  2BM6 A;  5JLV C;  2BM4 A;  3N90 A;  3JX8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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