1QA3A

Tailspike protein, mutant a334i
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
542
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSIQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
total genus 185
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa3A00
3RIQA 2V5IA 2IOUG 1WXRA 4OM9A 2VFPA 3AK5A 1DABA 3H09A 1TYWA 1QQ1A 2VFMA 1QRCA 3ML3A 4KH3A 1TYXA 1CLWA 1TYUA 1QRBA 2VFNA 2XC1A 3TH0A 1TSPA 3SYJA 1QA2A 2VFQA 1QA1A 2VFOA 3SZEA 1TYVA 1QA3A
chains in the Genus database with same CATH superfamily
4OJ5A 1K4ZA 1QJVA 1KCDA 1RWRA 2IOUG 2F3LA 4W8SA 4Z05A 3VSTA 4XLCA 1H80A 2NSPA 2PECA 2J8IA 2NT9A 3EQOA 1O8LA 4JRAC 3ZSCA 4YDTA 3GQ8A 3BH7B 2UVFA 4YZQA 2NT6A 3N90A 3B8YA 4U49A 3GQAA 4XLHA 3SQVA 2X85A 2VBMA 4Z06A 3B4NA 1HF2A 4OJPA 3P4GA 2QXZA 2X6XA 3GQ7A 1OFDA 4XMYA 1OFMA 3LJYA 4MXNA 2BM4A 1O8FA 1QRBA 1LLZA 1KQ5A 2PYHA 2VBKA 1AIRA 2QY1A 2VFQA 4XN0A 1QA1A 4XOTA 1NHCA 5DNSA 4XQFA 1PXZA 4XN3A 1KTWA 1OGOX 1CZFA 1XG2A 2IQ7A 2XT4A 3RIQA 4C2LA 1DBOA 2O6WA 2V5IA 2VJIA 4Z03A 2X6WA 4OM9A 1WXRA 1VBLA 1X0CA 3PSSA 2ODLA 2B0RA 2UVEA 4OZZA 1O8DA 1O8MA 1IDJA 5JLVC 1K8FA 3NAWA 1IDKA 1OFEA 1QQ1A 1O8IA 4OZYA 4YELA 1JTAA 3WWGA 5JMCB 4W8TA 4YC5A 5AMVA 1JRGA 3VMVA 4MR0A 4EW9A 4XOPA 1O8HA 1OFLA 1QCXA 1BHEA 3ML3A 4I84A 4XORA 3VSUA 2BM7A 5C1CA 3EQNA 3GRHA 3NB2A 4XR6A 3JX8A 1KCCA 2QX3A 2XT2A 2XC1A 1IB4A 1QA2A 2J8KA 1DBGA 2NTBA 4NK8A 1IA5A 4NK6A 2O0WA 2INVA 1GQ8A 1QA3A 3LYCA 1EZGA 3PSZA 1RU4A 4U4BA 4V02C 3DU1X 4XM3A 2XTYA 1RMGA 2O0VA 2XTXA 1DABA 3H09A 2QZAA 3VSVA 4URRA 4XLEA 2G0YA 1TYWA 3KRGA 4XKWA 2VFMA 2BSPA 4YEJA 2NTQA 2BM5A 1QRCA 2INUA 1OOCA 3N6ZA 3UW0A 1LLWA 3FY3A 4YZAA 2W7ZA 1TYUA 4XONA 1O8EA 2YUHA 3T9GA 2QYUA 2VFNA 2BM6A 1TSPA 2EWEA 2NSTA 2O1DA 3SYJA 3VMWA 1PLUA 4PMHA 2O04A 1EE6A 2VFOA 4W8QA 3BH6B 2PYGA 2X3HA 4YCQA 3PETA 4AVZA 1PE9A 2X6YA 1HG8A 3ZPPA 5C1EA 4XKVA 2BX6A 2NTPA 1EA0A 4OJ6A 3SUCA 1WMRA 2O17A 2NZMA 1L1IA 4HWVA 4XL9A 2VFPA 4YFOA 3AK5A 4OJLA 1O8GA 4W8RA 3GQ9A 1BN8A 1O88A 4XNFA 1LM1A 1O8KA 3LMWA 3SY2A 2VBEA 4KH3A 4YZXA 4OPWA 2VJJA 1OGMX 1TYXA 4YEIA 1K5CA 1CLWA 4XLAA 1O8JA 3TH0A 3B90A 4OJOA 4YZ0A 3JURA 3SZEA 2Z8GA 2XTWA 1TYVA 4XLFA
chains in the Genus database with same CATH topology
3LYCA 4OJ5A 1K4ZA 3RIQA 2BX6A 2V5IA 2IOUG 1WXRA 2F3LA 4OJ6A 4OM9A 4V02C 2B0RA 2J8IA 2VFPA 3AK5A 4OJLA 1DABA 3H09A 1K8FA 4JRAC 5JLVC 2G0YA 3BH7B 1TYWA 1QQ1A 3N90A 5JMCB 2VFMA 1QA3A 2BM5A 1QRCA 1HF2A 3ML3A 4OJPA 3P4GA 4KH3A 2BM7A 4OPWA 3N6ZA 3LJYA 1TYXA 2W7ZA 2BM4A 1CLWA 1TYUA 1QRBA 3JX8A 1KQ5A 2YUHA 2VFNA 2XC1A 2BM6A 1TSPA 4OJOA 3SYJA 3TH0A 1QA2A 2VFQA 1QA1A 2VFOA 3SZEA 3BH6B 1TYVA 3PETA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RIQ A;  2V5I A;  2IOU G;  1WXR A;  4OM9 A;  2VFP A;  3AK5 A;  1DAB A;  3H09 A;  1TYW A;  1QQ1 A;  2VFM A;  1QRC A;  3ML3 A;  4KH3 A;  1TYX A;  1CLW A;  1TYU A;  1QRB A;  2VFN A;  2XC1 A;  3TH0 A;  1TSP A;  3SYJ A;  1QA2 A;  2VFQ A;  1QA1 A;  2VFO A;  3SZE A;  1TYV A;  1QA3 A; 
#chains in the Genus database with same CATH topology
 4OJ5 A;  1K4Z A;  1QJV A;  1KCD A;  1RWR A;  2IOU G;  2F3L A;  4W8S A;  4Z05 A;  3VST A;  4XLC A;  1H80 A;  2NSP A;  2PEC A;  2J8I A;  2NT9 A;  3EQO A;  1O8L A;  4JRA C;  3ZSC A;  4YDT A;  3GQ8 A;  3BH7 B;  2UVF A;  4YZQ A;  2NT6 A;  3N90 A;  3B8Y A;  4U49 A;  3GQA A;  4XLH A;  3SQV A;  2X85 A;  2VBM A;  4Z06 A;  3B4N A;  1HF2 A;  4OJP A;  3P4G A;  2QXZ A;  2X6X A;  3GQ7 A;  1OFD A;  4XMY A;  1OFM A;  3LJY A;  4MXN A;  2BM4 A;  1O8F A;  1QRB A;  1LLZ A;  1KQ5 A;  2PYH A;  2VBK A;  1AIR A;  2QY1 A;  2VFQ A;  4XN0 A;  1QA1 A;  4XOT A;  1NHC A;  5DNS A;  4XQF A;  1PXZ A;  4XN3 A;  1KTW A;  1OGO X;  1CZF A;  1XG2 A;  2IQ7 A;  2XT4 A;  3RIQ A;  4C2L A;  1DBO A;  2O6W A;  2V5I A;  2VJI A;  4Z03 A;  2X6W A;  4OM9 A;  1WXR A;  1VBL A;  1X0C A;  3PSS A;  2ODL A;  2B0R A;  2UVE A;  4OZZ A;  1O8D A;  1O8M A;  1IDJ A;  5JLV C;  1K8F A;  3NAW A;  1IDK A;  1OFE A;  1QQ1 A;  1O8I A;  4OZY A;  4YEL A;  1JTA A;  3WWG A;  5JMC B;  4W8T A;  4YC5 A;  5AMV A;  1JRG A;  3VMV A;  4MR0 A;  4EW9 A;  4XOP A;  1O8H A;  1OFL A;  1QCX A;  1BHE A;  3ML3 A;  4I84 A;  4XOR A;  3VSU A;  2BM7 A;  5C1C A;  3EQN A;  3GRH A;  3NB2 A;  4XR6 A;  3JX8 A;  1KCC A;  2QX3 A;  2XT2 A;  2XC1 A;  1IB4 A;  1QA2 A;  2J8K A;  1DBG A;  2NTB A;  4NK8 A;  1IA5 A;  4NK6 A;  2O0W A;  2INV A;  1GQ8 A;  1QA3 A;  3LYC A;  1EZG A;  3PSZ A;  1RU4 A;  4U4B A;  4V02 C;  3DU1 X;  4XM3 A;  2XTY A;  1RMG A;  2O0V A;  2XTX A;  1DAB A;  3H09 A;  2QZA A;  3VSV A;  4URR A;  4XLE A;  2G0Y A;  1TYW A;  3KRG A;  4XKW A;  2VFM A;  2BSP A;  4YEJ A;  2NTQ A;  2BM5 A;  1QRC A;  2INU A;  1OOC A;  3N6Z A;  3UW0 A;  1LLW A;  3FY3 A;  4YZA A;  2W7Z A;  1TYU A;  4XON A;  1O8E A;  2YUH A;  3T9G A;  2QYU A;  2VFN A;  2BM6 A;  1TSP A;  2EWE A;  2NST A;  2O1D A;  3SYJ A;  3VMW A;  1PLU A;  4PMH A;  2O04 A;  1EE6 A;  2VFO A;  4W8Q A;  3BH6 B;  2PYG A;  2X3H A;  4YCQ A;  3PET A;  4AVZ A;  1PE9 A;  2X6Y A;  1HG8 A;  3ZPP A;  5C1E A;  4XKV A;  2BX6 A;  2NTP A;  1EA0 A;  4OJ6 A;  3SUC A;  1WMR A;  2O17 A;  2NZM A;  1L1I A;  4HWV A;  4XL9 A;  2VFP A;  4YFO A;  3AK5 A;  4OJL A;  1O8G A;  4W8R A;  3GQ9 A;  1BN8 A;  1O88 A;  4XNF A;  1LM1 A;  1O8K A;  3LMW A;  3SY2 A;  2VBE A;  4KH3 A;  4YZX A;  4OPW A;  2VJJ A;  1OGM X;  1TYX A;  4YEI A;  1K5C A;  1CLW A;  4XLA A;  1O8J A;  3TH0 A;  3B90 A;  4OJO A;  4YZ0 A;  3JUR A;  3SZE A;  2Z8G A;  2XTW A;  1TYV A;  4XLF A; 
#chains in the Genus database with same CATH homology
 3LYC A;  4OJ5 A;  1K4Z A;  3RIQ A;  2BX6 A;  2V5I A;  2IOU G;  1WXR A;  2F3L A;  4OJ6 A;  4OM9 A;  4V02 C;  2B0R A;  2J8I A;  2VFP A;  3AK5 A;  4OJL A;  1DAB A;  3H09 A;  1K8F A;  4JRA C;  5JLV C;  2G0Y A;  3BH7 B;  1TYW A;  1QQ1 A;  3N90 A;  5JMC B;  2VFM A;  1QA3 A;  2BM5 A;  1QRC A;  1HF2 A;  3ML3 A;  4OJP A;  3P4G A;  4KH3 A;  2BM7 A;  4OPW A;  3N6Z A;  3LJY A;  1TYX A;  2W7Z A;  2BM4 A;  1CLW A;  1TYU A;  1QRB A;  3JX8 A;  1KQ5 A;  2YUH A;  2VFN A;  2XC1 A;  2BM6 A;  1TSP A;  4OJO A;  3SYJ A;  3TH0 A;  1QA2 A;  2VFQ A;  1QA1 A;  2VFO A;  3SZE A;  3BH6 B;  1TYV A;  3PET A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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