1QA3A

Tailspike protein, mutant a334i
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSIQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
total genus 185
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa3A00
1QA3A 1QQ1A 2V5IA 1DABA 3SZEA 4KH3A 4OM9A 1QRCA 2IOUG 1QRBA 3TH0A 1TSPA 2VFQA 3AK5A 1TYWA 2VFOA 3SYJA 1TYXA 2VFPA 1CLWA 3RIQA 2XC1A 1TYVA 3ML3A 1TYUA 2VFMA 2VFNA 1QA2A 1QA1A 3H09A 1WXRA
chains in the Genus database with same CATH superfamily
2O6WA 1OGOX 4W8SA 1QA3A 1JRGA 4HWVA 1QJVA 1GQ8A 2X6YA 1LLWA 2UVEA 4PMHA 4YZAA 1DABA 4YZ0A 2QYUA 4KH3A 2UVFA 2J8IA 1WMRA 1EE6A 1O8LA 2VBMA 2XTWA 4MXNA 4XMYA 4XOTA 5C1EA 3T9GA 3VSTA 1KCDA 4XONA 4XORA 1OFMA 1VBLA 2B0RA 2BM7A 2NTBA 2O0WA 1DBOA 3UW0A 1TSPA 4XKWA 5C1CA 1TYWA 4U49A 1O88A 1TYXA 3N6ZA 2BX6A 1K8FA 1CLWA 3VSVA 1IDJA 3KRGA 4Z05A 2INVA 4YEJA 3NAWA 1TYVA 3GRHA 2BM4A 1TYUA 1DBGA 2VFMA 4XN3A 3JURA 2NSPA 3NB2A 4XN0A 3H09A 1AIRA 1HF2A 1KTWA 2W7ZA 2VBKA 4Z03A 1IA5A 4YC5A 2O1DA 2V5IA 4XL9A 4YDTA 2QY1A 2IQ7A 3P4GA 3ZSCA 2IOUG 1PE9A 3EQOA 1QCXA 2INUA 2NTQA 2O17A 4YEIA 4NK6A 1OGMX 3JX8A 1O8FA 3BH6B 3AK5A 2VFQA 3B8YA 4XR6A 4W8RA 2Z8GA 5JLVC 3SYJA 1LLZA 3FY3A 2VFPA 1OFEA 3GQ8A 4OZYA 1K4ZA 1KQ5A 2XC1A 4XLHA 1LM1A 2QX3A 1IDKA 3ML3A 1JTAA 4AVZA 2NZMA 2NTPA 1H80A 1K5CA 3GQ7A 3LYCA 2J8KA 4Z06A 1HG8A 1NHCA 3SQVA 4OJLA 1QA2A 2BSPA 4XLAA 2VJIA 4YZXA 2BM5A 2XTYA 2QZAA 2G0YA 2XTXA 4YCQA 1PXZA 1X0CA 4OJPA 1O8KA 1OFDA 3VMVA 3SZEA 3GQAA 4XOPA 3SUCA 1QRCA 1PLUA 4XNFA 1KCCA 1RWRA 4YZQA 2NT6A 3B90A 2BM6A 2ODLA 3BH7B 1OOCA 5AMVA 2X6XA 4NK8A 1IB4A 2VFOA 1OFLA 2F3LA 2PYGA 3DU1X 4YFOA 1O8JA 2XT2A 3VSUA 4XLCA 1BHEA 1O8EA 3RIQA 3EQNA 4OJ5A 2PYHA 2VJJA 3GQ9A 4OJ6A 4XLEA 2VFNA 3SY2A 4URRA 1RMGA 2NT9A 4XM3A 4XQFA 3PSSA 2X85A 3LJYA 4W8TA 3PETA 1QQ1A 3PSZA 2YUHA 1EZGA 1O8MA 1EA0A 4XLFA 4OJOA 1XG2A 4I84A 4OPWA 2QXZA 1O8IA 4OM9A 4W8QA 5DNSA 2XT4A 3WWGA 1O8HA 1O8DA 1QRBA 3B4NA 4YELA 3TH0A 4EW9A 1O8GA 1RU4A 3N90A 3LMWA 5JMCB 2X3HA 3ZPPA 2EWEA 2PECA 2X6WA 4JRAC 2VBEA 4U4BA 4C2LA 4XKVA 4OZZA 4V02C 2NSTA 1L1IA 1BN8A 1CZFA 2O0VA 4MR0A 1QA1A 3VMWA 2O04A 1WXRA
chains in the Genus database with same CATH topology
1QA3A 2W7ZA 2BM5A 3LJYA 3PETA 1QQ1A 2G0YA 2V5IA 2YUHA 4OJPA 1DABA 3P4GA 3SZEA 4KH3A 4OJLA 2J8IA 4OPWA 4OJOA 4OM9A 1QRCA 2IOUG 2BM6A 1QRBA 3BH7B 3JX8A 2BM7A 2B0RA 3TH0A 3BH6B 3N90A 1TSPA 2VFQA 3AK5A 5JMCB 1TYWA 2VFOA 5JLVC 2F3LA 3SYJA 3N6ZA 1TYXA 4JRAC 2BX6A 1K8FA 1CLWA 2VFPA 1WXRA 1K4ZA 1KQ5A 3RIQA 2XC1A 4OJ5A 4V02C 1TYVA 2BM4A 3ML3A 4OJ6A 1TYUA 2VFMA 2VFNA 3LYCA 1QA2A 1QA1A 3H09A 1HF2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QA3 A;  1QQ1 A;  2V5I A;  1DAB A;  3SZE A;  4KH3 A;  4OM9 A;  1QRC A;  2IOU G;  1QRB A;  3TH0 A;  1TSP A;  2VFQ A;  3AK5 A;  1TYW A;  2VFO A;  3SYJ A;  1TYX A;  2VFP A;  1CLW A;  3RIQ A;  2XC1 A;  1TYV A;  3ML3 A;  1TYU A;  2VFM A;  2VFN A;  1QA2 A;  1QA1 A;  3H09 A;  1WXR A; 
#chains in the Genus database with same CATH topology
 2O6W A;  1OGO X;  4W8S A;  1QA3 A;  1JRG A;  4HWV A;  1QJV A;  1GQ8 A;  2X6Y A;  1LLW A;  2UVE A;  4PMH A;  4YZA A;  1DAB A;  4YZ0 A;  2QYU A;  4KH3 A;  2UVF A;  2J8I A;  1WMR A;  1EE6 A;  1O8L A;  2VBM A;  2XTW A;  4MXN A;  4XMY A;  4XOT A;  5C1E A;  3T9G A;  3VST A;  1KCD A;  4XON A;  4XOR A;  1OFM A;  1VBL A;  2B0R A;  2BM7 A;  2NTB A;  2O0W A;  1DBO A;  3UW0 A;  1TSP A;  4XKW A;  5C1C A;  1TYW A;  4U49 A;  1O88 A;  1TYX A;  3N6Z A;  2BX6 A;  1K8F A;  1CLW A;  3VSV A;  1IDJ A;  3KRG A;  4Z05 A;  2INV A;  4YEJ A;  3NAW A;  1TYV A;  3GRH A;  2BM4 A;  1TYU A;  1DBG A;  2VFM A;  4XN3 A;  3JUR A;  2NSP A;  3NB2 A;  4XN0 A;  3H09 A;  1AIR A;  1HF2 A;  1KTW A;  2W7Z A;  2VBK A;  4Z03 A;  1IA5 A;  4YC5 A;  2O1D A;  2V5I A;  4XL9 A;  4YDT A;  2QY1 A;  2IQ7 A;  3P4G A;  3ZSC A;  2IOU G;  1PE9 A;  3EQO A;  1QCX A;  2INU A;  2NTQ A;  2O17 A;  4YEI A;  4NK6 A;  1OGM X;  3JX8 A;  1O8F A;  3BH6 B;  3AK5 A;  2VFQ A;  3B8Y A;  4XR6 A;  4W8R A;  2Z8G A;  5JLV C;  3SYJ A;  1LLZ A;  3FY3 A;  2VFP A;  1OFE A;  3GQ8 A;  4OZY A;  1K4Z A;  1KQ5 A;  2XC1 A;  4XLH A;  1LM1 A;  2QX3 A;  1IDK A;  3ML3 A;  1JTA A;  4AVZ A;  2NZM A;  2NTP A;  1H80 A;  1K5C A;  3GQ7 A;  3LYC A;  2J8K A;  4Z06 A;  1HG8 A;  1NHC A;  3SQV A;  4OJL A;  1QA2 A;  2BSP A;  4XLA A;  2VJI A;  4YZX A;  2BM5 A;  2XTY A;  2QZA A;  2G0Y A;  2XTX A;  4YCQ A;  1PXZ A;  1X0C A;  4OJP A;  1O8K A;  1OFD A;  3VMV A;  3SZE A;  3GQA A;  4XOP A;  3SUC A;  1QRC A;  1PLU A;  4XNF A;  1KCC A;  1RWR A;  4YZQ A;  2NT6 A;  3B90 A;  2BM6 A;  2ODL A;  3BH7 B;  1OOC A;  5AMV A;  2X6X A;  4NK8 A;  1IB4 A;  2VFO A;  1OFL A;  2F3L A;  2PYG A;  3DU1 X;  4YFO A;  1O8J A;  2XT2 A;  3VSU A;  4XLC A;  1BHE A;  1O8E A;  3RIQ A;  3EQN A;  4OJ5 A;  2PYH A;  2VJJ A;  3GQ9 A;  4OJ6 A;  4XLE A;  2VFN A;  3SY2 A;  4URR A;  1RMG A;  2NT9 A;  4XM3 A;  4XQF A;  3PSS A;  2X85 A;  3LJY A;  4W8T A;  3PET A;  1QQ1 A;  3PSZ A;  2YUH A;  1EZG A;  1O8M A;  1EA0 A;  4XLF A;  4OJO A;  1XG2 A;  4I84 A;  4OPW A;  2QXZ A;  1O8I A;  4OM9 A;  4W8Q A;  5DNS A;  2XT4 A;  3WWG A;  1O8H A;  1O8D A;  1QRB A;  3B4N A;  4YEL A;  3TH0 A;  4EW9 A;  1O8G A;  1RU4 A;  3N90 A;  3LMW A;  5JMC B;  2X3H A;  3ZPP A;  2EWE A;  2PEC A;  2X6W A;  4JRA C;  2VBE A;  4U4B A;  4C2L A;  4XKV A;  4OZZ A;  4V02 C;  2NST A;  1L1I A;  1BN8 A;  1CZF A;  2O0V A;  4MR0 A;  1QA1 A;  3VMW A;  2O04 A;  1WXR A; 
#chains in the Genus database with same CATH homology
 1QA3 A;  2W7Z A;  2BM5 A;  3LJY A;  3PET A;  1QQ1 A;  2G0Y A;  2V5I A;  2YUH A;  4OJP A;  1DAB A;  3P4G A;  3SZE A;  4KH3 A;  4OJL A;  2J8I A;  4OPW A;  4OJO A;  4OM9 A;  1QRC A;  2IOU G;  2BM6 A;  1QRB A;  3BH7 B;  3JX8 A;  2BM7 A;  2B0R A;  3TH0 A;  3BH6 B;  3N90 A;  1TSP A;  2VFQ A;  3AK5 A;  5JMC B;  1TYW A;  2VFO A;  5JLV C;  2F3L A;  3SYJ A;  3N6Z A;  1TYX A;  4JRA C;  2BX6 A;  1K8F A;  1CLW A;  2VFP A;  1WXR A;  1K4Z A;  1KQ5 A;  3RIQ A;  2XC1 A;  4OJ5 A;  4V02 C;  1TYV A;  2BM4 A;  3ML3 A;  4OJ6 A;  1TYU A;  2VFM A;  2VFN A;  3LYC A;  1QA2 A;  1QA1 A;  3H09 A;  1HF2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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