1QA3A

Tailspike protein, mutant a334i
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSIQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
molecule keywords TAILSPIKE PROTEIN
total genus 185
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa3A00
4KH3A 1DABA 3AK5A 1TYUA 1QA2A 1QQ1A 1QRCA 1CLWA 1QRBA 4OM9A 1TYXA 2VFQA 2VFOA 3RIQA 2IOUG 3SZEA 3TH0A 3H09A 2XC1A 3SYJA 3ML3A 1TYVA 2VFNA 2VFMA 1TSPA 1WXRA 1QA1A 1QA3A 2V5IA 2VFPA 1TYWA
chains in the Genus database with same CATH superfamily
3VSUA 2ODLA 4KH3A 4OZYA 1O8IA 1O8DA 2UVEA 2O17A 3PETA 4YZXA 3GQAA 3P4GA 3PSZA 1QA2A 4YC5A 3LMWA 2NT6A 1L1IA 1QRBA 2NSTA 2XT4A 4W8SA 2IQ7A 1TYXA 2BX6A 4YCQA 4YEJA 2BM7A 5AMVA 2X6YA 4OPWA 4HWVA 1PE9A 4NK8A 3VMWA 5JLVC 1BHEA 4XKVA 1O8GA 2UVFA 3H09A 4W8QA 1OFMA 2O04A 2NTBA 2QX3A 2QZAA 2BM6A 2XC1A 1OOCA 2J8IA 1TSPA 3WWGA 4OZZA 1QA1A 1X0CA 3GQ8A 4XOTA 4JRAC 2O6WA 1IDJA 3UW0A 3LJYA 3T9GA 1OGOX 4OJLA 4W8RA 4YZ0A 1BN8A 1O8EA 3FY3A 2Z8GA 1QRCA 4NK6A 2PYHA 2X6WA 4YEIA 1JRGA 1GQ8A 1OFEA 2NTQA 4XLEA 2VBEA 1DBGA 2O0WA 1O8MA 4XLAA 4Z06A 2EWEA 1KQ5A 1O8HA 1LLWA 3TH0A 1O8FA 1K4ZA 1OFDA 2INVA 3SYJA 1QCXA 1XG2A 3ML3A 1TYVA 4YZAA 4Z05A 4U49A 2VFMA 3GQ9A 3B90A 3N6ZA 4MR0A 4YELA 1QA3A 5C1CA 2F3LA 2G0YA 2NTPA 1EZGA 2VJIA 1DBOA 4YFOA 4EW9A 2BM5A 3ZSCA 4XM3A 1QJVA 4OJOA 5C1EA 2XTXA 1EA0A 1VBLA 2O1DA 4OJ6A 4PMHA 4URRA 1EE6A 1TYUA 2VJJA 1O8LA 4XLCA 2XT2A 1WMRA 2NSPA 4MXNA 4XLHA 4YZQA 2O0VA 1RU4A 3LYCA 2VFQA 3SQVA 3SUCA 2BSPA 2QYUA 3N90A 1O8KA 4OJ5A 3VSTA 2J8KA 1PLUA 3DU1X 4XN0A 4XORA 2W7ZA 3NAWA 1IB4A 2BM4A 3BH7B 4I84A 3ZPPA 5JMCB 1CZFA 1OGMX 4AVZA 4XKWA 1RWRA 4XN3A 3JURA 3NB2A 3B8YA 4YDTA 1QQ1A 2VFPA 4V02C 2VBMA 1OFLA 1WXRA 1IA5A 3SY2A 1HG8A 1JTAA 1DABA 3AK5A 3VSVA 2X85A 1KTWA 2XTYA 1O88A 2YUHA 1RMGA 1LLZA 2VBKA 3GRHA 2PYGA 4Z03A 4XQFA 1KCDA 3B4NA 4OJPA 4C2LA 1CLWA 2X3HA 1NHCA 4OM9A 4XMYA 4XONA 3VMVA 2X6XA 2B0RA 3JX8A 2VFOA 2NT9A 3KRGA 1O8JA 2INUA 2IOUG 2XTWA 3RIQA 3SZEA 3PSSA 1AIRA 2NZMA 1LM1A 4XL9A 3EQNA 1IDKA 4XLFA 2PECA 5DNSA 1KCCA 4XR6A 1PXZA 2VFNA 1HF2A 1H80A 3EQOA 2QXZA 4XNFA 4U4BA 2QY1A 3BH6B 3GQ7A 4W8TA 2V5IA 1K5CA 1K8FA 4XOPA 1TYWA
chains in the Genus database with same CATH topology
4JRAC 4OJOA 4KH3A 3LJYA 1DABA 3AK5A 3PETA 4OJLA 4OJ6A 3P4GA 1TYUA 2YUHA 1QA2A 1QRCA 4OJPA 1CLWA 1QRBA 4OM9A 1TYXA 2BX6A 2BM7A 3LYCA 2VFQA 4OPWA 2B0RA 4V02C 1KQ5A 3JX8A 2VFOA 3RIQA 3N90A 2IOUG 4OJ5A 3SZEA 5JLVC 2VFPA 3TH0A 3H09A 2W7ZA 1K4ZA 2BM4A 2XC1A 3BH7B 2BM6A 3ML3A 3SYJA 1TYVA 2VFNA 2VFMA 1HF2A 3N6ZA 2J8IA 5JMCB 1TSPA 1WXRA 1QA1A 1QA3A 2F3LA 2G0YA 3BH6B 2V5IA 1QQ1A 2BM5A 1K8FA 1TYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KH3 A;  1DAB A;  3AK5 A;  1TYU A;  1QA2 A;  1QQ1 A;  1QRC A;  1CLW A;  1QRB A;  4OM9 A;  1TYX A;  2VFQ A;  2VFO A;  3RIQ A;  2IOU G;  3SZE A;  3TH0 A;  3H09 A;  2XC1 A;  3SYJ A;  3ML3 A;  1TYV A;  2VFN A;  2VFM A;  1TSP A;  1WXR A;  1QA1 A;  1QA3 A;  2V5I A;  2VFP A;  1TYW A; 
#chains in the Genus database with same CATH topology
 3VSU A;  2ODL A;  4KH3 A;  4OZY A;  1O8I A;  1O8D A;  2UVE A;  2O17 A;  3PET A;  4YZX A;  3GQA A;  3P4G A;  3PSZ A;  1QA2 A;  4YC5 A;  3LMW A;  2NT6 A;  1L1I A;  1QRB A;  2NST A;  2XT4 A;  4W8S A;  2IQ7 A;  1TYX A;  2BX6 A;  4YCQ A;  4YEJ A;  2BM7 A;  5AMV A;  2X6Y A;  4OPW A;  4HWV A;  1PE9 A;  4NK8 A;  3VMW A;  5JLV C;  1BHE A;  4XKV A;  1O8G A;  2UVF A;  3H09 A;  4W8Q A;  1OFM A;  2O04 A;  2NTB A;  2QX3 A;  2QZA A;  2BM6 A;  2XC1 A;  1OOC A;  2J8I A;  1TSP A;  3WWG A;  4OZZ A;  1QA1 A;  1X0C A;  3GQ8 A;  4XOT A;  4JRA C;  2O6W A;  1IDJ A;  3UW0 A;  3LJY A;  3T9G A;  1OGO X;  4OJL A;  4W8R A;  4YZ0 A;  1BN8 A;  1O8E A;  3FY3 A;  2Z8G A;  1QRC A;  4NK6 A;  2PYH A;  2X6W A;  4YEI A;  1JRG A;  1GQ8 A;  1OFE A;  2NTQ A;  4XLE A;  2VBE A;  1DBG A;  2O0W A;  1O8M A;  4XLA A;  4Z06 A;  2EWE A;  1KQ5 A;  1O8H A;  1LLW A;  3TH0 A;  1O8F A;  1K4Z A;  1OFD A;  2INV A;  3SYJ A;  1QCX A;  1XG2 A;  3ML3 A;  1TYV A;  4YZA A;  4Z05 A;  4U49 A;  2VFM A;  3GQ9 A;  3B90 A;  3N6Z A;  4MR0 A;  4YEL A;  1QA3 A;  5C1C A;  2F3L A;  2G0Y A;  2NTP A;  1EZG A;  2VJI A;  1DBO A;  4YFO A;  4EW9 A;  2BM5 A;  3ZSC A;  4XM3 A;  1QJV A;  4OJO A;  5C1E A;  2XTX A;  1EA0 A;  1VBL A;  2O1D A;  4OJ6 A;  4PMH A;  4URR A;  1EE6 A;  1TYU A;  2VJJ A;  1O8L A;  4XLC A;  2XT2 A;  1WMR A;  2NSP A;  4MXN A;  4XLH A;  4YZQ A;  2O0V A;  1RU4 A;  3LYC A;  2VFQ A;  3SQV A;  3SUC A;  2BSP A;  2QYU A;  3N90 A;  1O8K A;  4OJ5 A;  3VST A;  2J8K A;  1PLU A;  3DU1 X;  4XN0 A;  4XOR A;  2W7Z A;  3NAW A;  1IB4 A;  2BM4 A;  3BH7 B;  4I84 A;  3ZPP A;  5JMC B;  1CZF A;  1OGM X;  4AVZ A;  4XKW A;  1RWR A;  4XN3 A;  3JUR A;  3NB2 A;  3B8Y A;  4YDT A;  1QQ1 A;  2VFP A;  4V02 C;  2VBM A;  1OFL A;  1WXR A;  1IA5 A;  3SY2 A;  1HG8 A;  1JTA A;  1DAB A;  3AK5 A;  3VSV A;  2X85 A;  1KTW A;  2XTY A;  1O88 A;  2YUH A;  1RMG A;  1LLZ A;  2VBK A;  3GRH A;  2PYG A;  4Z03 A;  4XQF A;  1KCD A;  3B4N A;  4OJP A;  4C2L A;  1CLW A;  2X3H A;  1NHC A;  4OM9 A;  4XMY A;  4XON A;  3VMV A;  2X6X A;  2B0R A;  3JX8 A;  2VFO A;  2NT9 A;  3KRG A;  1O8J A;  2INU A;  2IOU G;  2XTW A;  3RIQ A;  3SZE A;  3PSS A;  1AIR A;  2NZM A;  1LM1 A;  4XL9 A;  3EQN A;  1IDK A;  4XLF A;  2PEC A;  5DNS A;  1KCC A;  4XR6 A;  1PXZ A;  2VFN A;  1HF2 A;  1H80 A;  3EQO A;  2QXZ A;  4XNF A;  4U4B A;  2QY1 A;  3BH6 B;  3GQ7 A;  4W8T A;  2V5I A;  1K5C A;  1K8F A;  4XOP A;  1TYW A; 
#chains in the Genus database with same CATH homology
 4JRA C;  4OJO A;  4KH3 A;  3LJY A;  1DAB A;  3AK5 A;  3PET A;  4OJL A;  4OJ6 A;  3P4G A;  1TYU A;  2YUH A;  1QA2 A;  1QRC A;  4OJP A;  1CLW A;  1QRB A;  4OM9 A;  1TYX A;  2BX6 A;  2BM7 A;  3LYC A;  2VFQ A;  4OPW A;  2B0R A;  4V02 C;  1KQ5 A;  3JX8 A;  2VFO A;  3RIQ A;  3N90 A;  2IOU G;  4OJ5 A;  3SZE A;  5JLV C;  2VFP A;  3TH0 A;  3H09 A;  2W7Z A;  1K4Z A;  2BM4 A;  2XC1 A;  3BH7 B;  2BM6 A;  3ML3 A;  3SYJ A;  1TYV A;  2VFN A;  2VFM A;  1HF2 A;  3N6Z A;  2J8I A;  5JMC B;  1TSP A;  1WXR A;  1QA1 A;  1QA3 A;  2F3L A;  2G0Y A;  3BH6 B;  2V5I A;  1QQ1 A;  2BM5 A;  1K8F A;  1TYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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