1OFMA

Crystal structure of chondroitinase b complexed to chondroitin 4-sulfate tetrasaccharide
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
481
structure length
481
Chain Sequence
EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
source organism Pedobacter heparinus
molecule tags Lyase
total genus 183
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ofmA00
1K5CA 1OFMA 4HWVA 4XOTA 1OGMX 3GQ8A 3B4NA 1O8IA 2O0VA 4XLFA 2VBKA 4MXNA 4XN0A 1KCCA 2NT9A 2NZMA 1RU4A 4OJPA 4XLAA 1O88A 3JURA 1AIRA 4NK8A 4YZXA 4XQFA 4Z03A 3FY3A 4YZQA 2QXZA 4OJOA 2IQ7A 4XL9A 1PLUA 2ODLA 2QY1A 3VSUA 1XG2A 1O8LA 4XLHA 1KCDA 2O04A 2X6XA 1O8JA 4Z05A 4XN3A 2NTQA 2QX3A 4MR0A 4XORA 3GRHA 5C1EA 4OJ6A 2PECA 1IDKA 1OFLA 3LMWA 3B8YA 2VBEA 1NHCA 5C1CA 2X85A 4NK6A 1BN8A 1RMGA 4YEJA 3VMVA 4C2LA 4U49A 1O8MA 1JRGA 2UVFA 3ZPPA 3GQ7A 2Z8GA 3EQOA 4XOPA 1X0CA 1O8KA 2VJJA 2VBMA 4EW9A 3GQ9A 4I84A 4XLEA 2O0WA 2UVEA 1GQ8A 2NTPA 1EE6A 4YZ0A 2NT6A 4W8SA 1BHEA 4XKVA 1IB4A 1OOCA 2X3HA 4Z06A 1O8HA 3GQAA 2INVA 1O8DA 4U4BA 4YZAA 1RWRA 2NSTA 1JTAA 2NTBA 1QJVA 1KTWA 2BSPA 4XMYA 1QCXA 4URRA 1WMRA 2O1DA 3ZSCA 4OJ5A 2EWEA 3VSVA 4PMHA 4XM3A 1DBOA 4XNFA 4XR6A 2X6WA 1H80A 3EQNA 4YELA 1IA5A 2VJIA 4OJLA 4XLCA 1IDJA 1DBGA 1OGOX 3WWGA 4OZYA 1PXZA 3SUCA 2PYHA 2X6YA 5AMVA 1O8EA 2PYGA 2O17A 2INUA 4XKWA 2NSPA 4AVZA 3B90A 3VSTA 1HG8A 4W8TA 4OZZA 4XONA 1VBLA 3UW0A 4W8RA 1O8GA 1PE9A 1O8FA 3T9GA 4W8QA 3KRGA 3VMWA 1CZFA
chains in the Genus database with same CATH superfamily
1LM1A 1QRCA 1OFMA 1K5CA 4HWVA 4XOTA 1OGMX 3GQ8A 3B4NA 1O8IA 2VFNA 2O0VA 2VFQA 3DU1X 2VFMA 4XLFA 2VBKA 4MXNA 4XN0A 1KCCA 2NT9A 3JX8A 2NZMA 1RU4A 4OJPA 4YFOA 2BX6A 3SY2A 4XLAA 1O88A 3JURA 1AIRA 4NK8A 3N90A 4YZXA 4Z03A 3FY3A 4XQFA 1CLWA 4YZQA 2QXZA 4OJOA 2IQ7A 4XL9A 1PLUA 2VFOA 2XTYA 3BH6B 2ODLA 2QY1A 2F3LA 4OM9A 3VSUA 1WXRA 1LLWA 1XG2A 3LYCA 1O8LA 1DABA 4XLHA 4OPWA 1KCDA 3LJYA 2O04A 2X6XA 2XTWA 3SZEA 1O8JA 2QZAA 4Z05A 4XN3A 1HF2A 1TYXA 2NTQA 2QX3A 4JRAC 4MR0A 4XORA 1QA1A 3GRHA 1EA0A 2BM7A 3N6ZA 2PECA 3NAWA 4OJ6A 1IDKA 5C1EA 1OFLA 3LMWA 3B8YA 1TYVA 2VBEA 1NHCA 1QA3A 5C1CA 2X85A 4NK6A 1OFDA 3PETA 1BN8A 1RMGA 4YEJA 3VMVA 4C2LA 4U49A 1O8MA 1JRGA 3BH7B 2UVFA 3ZPPA 3GQ7A 2Z8GA 3EQOA 2XT4A 4XOPA 1X0CA 1O8KA 2VJJA 2VBMA 2XTXA 3PSZA 4YDTA 2J8KA 1QRBA 4EW9A 3GQ9A 4I84A 4YEIA 4XLEA 2O0WA 2UVEA 1GQ8A 2NTPA 1L1IA 4KH3A 1EE6A 2XT2A 1TSPA 4YZ0A 2NT6A 4W8SA 1BHEA 2YUHA 1LLZA 4XKVA 1IB4A 2G0YA 1OOCA 2X3HA 2BM6A 4Z06A 2O6WA 1KQ5A 1O8HA 3GQAA 5JLVC 2INVA 1O8DA 4U4BA 3PSSA 1EZGA 1RWRA 2NSTA 4YZAA 3P4GA 1JTAA 2NTBA 1QJVA 1KTWA 2BSPA 4XMYA 4YCQA 1QCXA 3ML3A 1TYUA 2VFPA 5DNSA 4URRA 1WMRA 2O1DA 3ZSCA 4OJ5A 2EWEA 3VSVA 2B0RA 4PMHA 4XM3A 2J8IA 1DBOA 3TH0A 2IOUG 4XNFA 4XR6A 2X6WA 1H80A 3EQNA 4YELA 3RIQA 1IA5A 2VJIA 4OJLA 2BM5A 1IDJA 4XLCA 1DBGA 1OGOX 3SQVA 3WWGA 3AK5A 4OZYA 2BM4A 1PXZA 3SUCA 2PYHA 2X6YA 5AMVA 1TYWA 1O8EA 2PYGA 2O17A 2INUA 4XKWA 2W7ZA 4YC5A 3SYJA 1QA2A 2NSPA 4AVZA 1K4ZA 3B90A 3VSTA 2QYUA 1HG8A 4W8TA 4OZZA 1K8FA 4XONA 5JMCB 1VBLA 3UW0A 4W8RA 2V5IA 4V02C 1O8GA 1PE9A 2XC1A 3NB2A 1O8FA 3T9GA 4W8QA 3H09A 3KRGA 3VMWA 1CZFA 1OFEA 1QQ1A
chains in the Genus database with same CATH topology
1K5CA 1OFMA 4HWVA 4XOTA 1OGMX 3GQ8A 3B4NA 1O8IA 2O0VA 4XLFA 2VBKA 4MXNA 4XN0A 1KCCA 2NT9A 2NZMA 1RU4A 4OJPA 4XLAA 1O88A 3JURA 1AIRA 4NK8A 4YZXA 4XQFA 4Z03A 3FY3A 4YZQA 2QXZA 4OJOA 2IQ7A 4XL9A 1PLUA 2ODLA 2QY1A 3VSUA 1XG2A 1O8LA 4XLHA 1KCDA 2O04A 2X6XA 1O8JA 4Z05A 4XN3A 2NTQA 2QX3A 4MR0A 4XORA 3GRHA 5C1EA 4OJ6A 2PECA 1IDKA 1OFLA 3LMWA 3B8YA 2VBEA 1NHCA 5C1CA 2X85A 4NK6A 1BN8A 1RMGA 4YEJA 3VMVA 4C2LA 4U49A 1O8MA 1JRGA 2UVFA 3ZPPA 3GQ7A 2Z8GA 3EQOA 4XOPA 1X0CA 1O8KA 2VJJA 2VBMA 4EW9A 3GQ9A 4I84A 4XLEA 2O0WA 2UVEA 1GQ8A 2NTPA 1EE6A 4YZ0A 2NT6A 4W8SA 1BHEA 4XKVA 1IB4A 1OOCA 2X3HA 4Z06A 1O8HA 3GQAA 2INVA 1O8DA 4U4BA 4YZAA 1RWRA 2NSTA 1JTAA 2NTBA 1QJVA 1KTWA 2BSPA 4XMYA 1QCXA 4URRA 1WMRA 2O1DA 3ZSCA 4OJ5A 2EWEA 3VSVA 4PMHA 4XM3A 1DBOA 4XNFA 4XR6A 2X6WA 1H80A 3EQNA 4YELA 1IA5A 2VJIA 4OJLA 4XLCA 1IDJA 1DBGA 1OGOX 3WWGA 4OZYA 1PXZA 3SUCA 2PYHA 2X6YA 5AMVA 1O8EA 2PYGA 2O17A 2INUA 4XKWA 2NSPA 4AVZA 3B90A 3VSTA 1HG8A 4W8TA 4OZZA 4XONA 1VBLA 3UW0A 4W8RA 1O8GA 1PE9A 1O8FA 3T9GA 4W8QA 3KRGA 3VMWA 1CZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K5C A;  1OFM A;  4HWV A;  4XOT A;  1OGM X;  3GQ8 A;  3B4N A;  1O8I A;  2O0V A;  4XLF A;  2VBK A;  4MXN A;  4XN0 A;  1KCC A;  2NT9 A;  2NZM A;  1RU4 A;  4OJP A;  4XLA A;  1O88 A;  3JUR A;  1AIR A;  4NK8 A;  4YZX A;  4XQF A;  4Z03 A;  3FY3 A;  4YZQ A;  2QXZ A;  4OJO A;  2IQ7 A;  4XL9 A;  1PLU A;  2ODL A;  2QY1 A;  3VSU A;  1XG2 A;  1O8L A;  4XLH A;  1KCD A;  2O04 A;  2X6X A;  1O8J A;  4Z05 A;  4XN3 A;  2NTQ A;  2QX3 A;  4MR0 A;  4XOR A;  3GRH A;  5C1E A;  4OJ6 A;  2PEC A;  1IDK A;  1OFL A;  3LMW A;  3B8Y A;  2VBE A;  1NHC A;  5C1C A;  2X85 A;  4NK6 A;  1BN8 A;  1RMG A;  4YEJ A;  3VMV A;  4C2L A;  4U49 A;  1O8M A;  1JRG A;  2UVF A;  3ZPP A;  3GQ7 A;  2Z8G A;  3EQO A;  4XOP A;  1X0C A;  1O8K A;  2VJJ A;  2VBM A;  4EW9 A;  3GQ9 A;  4I84 A;  4XLE A;  2O0W A;  2UVE A;  1GQ8 A;  2NTP A;  1EE6 A;  4YZ0 A;  2NT6 A;  4W8S A;  1BHE A;  4XKV A;  1IB4 A;  1OOC A;  2X3H A;  4Z06 A;  1O8H A;  3GQA A;  2INV A;  1O8D A;  4U4B A;  4YZA A;  1RWR A;  2NST A;  1JTA A;  2NTB A;  1QJV A;  1KTW A;  2BSP A;  4XMY A;  1QCX A;  4URR A;  1WMR A;  2O1D A;  3ZSC A;  4OJ5 A;  2EWE A;  3VSV A;  4PMH A;  4XM3 A;  1DBO A;  4XNF A;  4XR6 A;  2X6W A;  1H80 A;  3EQN A;  4YEL A;  1IA5 A;  2VJI A;  4OJL A;  4XLC A;  1IDJ A;  1DBG A;  1OGO X;  3WWG A;  4OZY A;  1PXZ A;  3SUC A;  2PYH A;  2X6Y A;  5AMV A;  1O8E A;  2PYG A;  2O17 A;  2INU A;  4XKW A;  2NSP A;  4AVZ A;  3B90 A;  3VST A;  1HG8 A;  4W8T A;  4OZZ A;  4XON A;  1VBL A;  3UW0 A;  4W8R A;  1O8G A;  1PE9 A;  1O8F A;  3T9G A;  4W8Q A;  3KRG A;  3VMW A;  1CZF A; 
#chains in the Genus database with same CATH topology
 1LM1 A;  1QRC A;  1OFM A;  1K5C A;  4HWV A;  4XOT A;  1OGM X;  3GQ8 A;  3B4N A;  1O8I A;  2VFN A;  2O0V A;  2VFQ A;  3DU1 X;  2VFM A;  4XLF A;  2VBK A;  4MXN A;  4XN0 A;  1KCC A;  2NT9 A;  3JX8 A;  2NZM A;  1RU4 A;  4OJP A;  4YFO A;  2BX6 A;  3SY2 A;  4XLA A;  1O88 A;  3JUR A;  1AIR A;  4NK8 A;  3N90 A;  4YZX A;  4Z03 A;  3FY3 A;  4XQF A;  1CLW A;  4YZQ A;  2QXZ A;  4OJO A;  2IQ7 A;  4XL9 A;  1PLU A;  2VFO A;  2XTY A;  3BH6 B;  2ODL A;  2QY1 A;  2F3L A;  4OM9 A;  3VSU A;  1WXR A;  1LLW A;  1XG2 A;  3LYC A;  1O8L A;  1DAB A;  4XLH A;  4OPW A;  1KCD A;  3LJY A;  2O04 A;  2X6X A;  2XTW A;  3SZE A;  1O8J A;  2QZA A;  4Z05 A;  4XN3 A;  1HF2 A;  1TYX A;  2NTQ A;  2QX3 A;  4JRA C;  4MR0 A;  4XOR A;  1QA1 A;  3GRH A;  1EA0 A;  2BM7 A;  3N6Z A;  2PEC A;  3NAW A;  4OJ6 A;  1IDK A;  5C1E A;  1OFL A;  3LMW A;  3B8Y A;  1TYV A;  2VBE A;  1NHC A;  1QA3 A;  5C1C A;  2X85 A;  4NK6 A;  1OFD A;  3PET A;  1BN8 A;  1RMG A;  4YEJ A;  3VMV A;  4C2L A;  4U49 A;  1O8M A;  1JRG A;  3BH7 B;  2UVF A;  3ZPP A;  3GQ7 A;  2Z8G A;  3EQO A;  2XT4 A;  4XOP A;  1X0C A;  1O8K A;  2VJJ A;  2VBM A;  2XTX A;  3PSZ A;  4YDT A;  2J8K A;  1QRB A;  4EW9 A;  3GQ9 A;  4I84 A;  4YEI A;  4XLE A;  2O0W A;  2UVE A;  1GQ8 A;  2NTP A;  1L1I A;  4KH3 A;  1EE6 A;  2XT2 A;  1TSP A;  4YZ0 A;  2NT6 A;  4W8S A;  1BHE A;  2YUH A;  1LLZ A;  4XKV A;  1IB4 A;  2G0Y A;  1OOC A;  2X3H A;  2BM6 A;  4Z06 A;  2O6W A;  1KQ5 A;  1O8H A;  3GQA A;  5JLV C;  2INV A;  1O8D A;  4U4B A;  3PSS A;  1EZG A;  1RWR A;  2NST A;  4YZA A;  3P4G A;  1JTA A;  2NTB A;  1QJV A;  1KTW A;  2BSP A;  4XMY A;  4YCQ A;  1QCX A;  3ML3 A;  1TYU A;  2VFP A;  5DNS A;  4URR A;  1WMR A;  2O1D A;  3ZSC A;  4OJ5 A;  2EWE A;  3VSV A;  2B0R A;  4PMH A;  4XM3 A;  2J8I A;  1DBO A;  3TH0 A;  2IOU G;  4XNF A;  4XR6 A;  2X6W A;  1H80 A;  3EQN A;  4YEL A;  3RIQ A;  1IA5 A;  2VJI A;  4OJL A;  2BM5 A;  1IDJ A;  4XLC A;  1DBG A;  1OGO X;  3SQV A;  3WWG A;  3AK5 A;  4OZY A;  2BM4 A;  1PXZ A;  3SUC A;  2PYH A;  2X6Y A;  5AMV A;  1TYW A;  1O8E A;  2PYG A;  2O17 A;  2INU A;  4XKW A;  2W7Z A;  4YC5 A;  3SYJ A;  1QA2 A;  2NSP A;  4AVZ A;  1K4Z A;  3B90 A;  3VST A;  2QYU A;  1HG8 A;  4W8T A;  4OZZ A;  1K8F A;  4XON A;  5JMC B;  1VBL A;  3UW0 A;  4W8R A;  2V5I A;  4V02 C;  1O8G A;  1PE9 A;  2XC1 A;  3NB2 A;  1O8F A;  3T9G A;  4W8Q A;  3H09 A;  3KRG A;  3VMW A;  1CZF A;  1OFE A;  1QQ1 A; 
#chains in the Genus database with same CATH homology
 1K5C A;  1OFM A;  4HWV A;  4XOT A;  1OGM X;  3GQ8 A;  3B4N A;  1O8I A;  2O0V A;  4XLF A;  2VBK A;  4MXN A;  4XN0 A;  1KCC A;  2NT9 A;  2NZM A;  1RU4 A;  4OJP A;  4XLA A;  1O88 A;  3JUR A;  1AIR A;  4NK8 A;  4YZX A;  4XQF A;  4Z03 A;  3FY3 A;  4YZQ A;  2QXZ A;  4OJO A;  2IQ7 A;  4XL9 A;  1PLU A;  2ODL A;  2QY1 A;  3VSU A;  1XG2 A;  1O8L A;  4XLH A;  1KCD A;  2O04 A;  2X6X A;  1O8J A;  4Z05 A;  4XN3 A;  2NTQ A;  2QX3 A;  4MR0 A;  4XOR A;  3GRH A;  5C1E A;  4OJ6 A;  2PEC A;  1IDK A;  1OFL A;  3LMW A;  3B8Y A;  2VBE A;  1NHC A;  5C1C A;  2X85 A;  4NK6 A;  1BN8 A;  1RMG A;  4YEJ A;  3VMV A;  4C2L A;  4U49 A;  1O8M A;  1JRG A;  2UVF A;  3ZPP A;  3GQ7 A;  2Z8G A;  3EQO A;  4XOP A;  1X0C A;  1O8K A;  2VJJ A;  2VBM A;  4EW9 A;  3GQ9 A;  4I84 A;  4XLE A;  2O0W A;  2UVE A;  1GQ8 A;  2NTP A;  1EE6 A;  4YZ0 A;  2NT6 A;  4W8S A;  1BHE A;  4XKV A;  1IB4 A;  1OOC A;  2X3H A;  4Z06 A;  1O8H A;  3GQA A;  2INV A;  1O8D A;  4U4B A;  4YZA A;  1RWR A;  2NST A;  1JTA A;  2NTB A;  1QJV A;  1KTW A;  2BSP A;  4XMY A;  1QCX A;  4URR A;  1WMR A;  2O1D A;  3ZSC A;  4OJ5 A;  2EWE A;  3VSV A;  4PMH A;  4XM3 A;  1DBO A;  4XNF A;  4XR6 A;  2X6W A;  1H80 A;  3EQN A;  4YEL A;  1IA5 A;  2VJI A;  4OJL A;  4XLC A;  1IDJ A;  1DBG A;  1OGO X;  3WWG A;  4OZY A;  1PXZ A;  3SUC A;  2PYH A;  2X6Y A;  5AMV A;  1O8E A;  2PYG A;  2O17 A;  2INU A;  4XKW A;  2NSP A;  4AVZ A;  3B90 A;  3VST A;  1HG8 A;  4W8T A;  4OZZ A;  4XON A;  1VBL A;  3UW0 A;  4W8R A;  1O8G A;  1PE9 A;  1O8F A;  3T9G A;  4W8Q A;  3KRG A;  3VMW A;  1CZF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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