1OFMA

Crystal structure of chondroitinase b complexed to chondroitin 4-sulfate tetrasaccharide
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
481
structure length
481
Chain Sequence
b'EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
source organism Pedobacter heparinus
molecule tags Lyase
total genus 183
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ofmA00
1JRGA 1PLUA 4XM3A 2NTBA 2QX3A 3VSVA 3FY3A 4XR6A 1O8DA 1WMRA 4XN3A 5C1CA 4NK8A 4XL9A 4XKWA 4YEJA 1O8MA 3GQ9A 2VBMA 1AIRA 3EQNA 4OJPA 1RMGA 4MXNA 4YZAA 1RWRA 4XLFA 1BHEA 1OGOX 3GQ7A 1DBOA 1CZFA 2O17A 2QXZA 4URRA 1OFLA 4XORA 1PE9A 1OGMX 5AMVA 4OJOA 2NTPA 1IB4A 4XONA 2O1DA 2VBKA 4XLAA 4XN0A 2PYHA 2X6XA 1OOCA 1O8LA 1XG2A 4Z06A 1IA5A 4I84A 3WWGA 2NSPA 4W8RA 1K5CA 1O8FA 3LMWA 3VSTA 2ODLA 4HWVA 2BSPA 2UVFA 2NTQA 2NT6A 2NSTA 4XLEA 1KTWA 1NHCA 3EQOA 1EE6A 1GQ8A 4OJ6A 4W8TA 3B4NA 2IQ7A 4XOTA 4XKVA 1KCDA 3UW0A 2X6WA 1JTAA 2UVEA 1QJVA 4XLCA 1DBGA 4C2LA 4Z05A 4OJLA 4U49A 1O8JA 3T9GA 3SUCA 3GRHA 4XLHA 3ZPPA 2NZMA 1IDKA 2O0VA 2VJIA 2QY1A 2X3HA 4MR0A 1QCXA 2EWEA 4W8SA 2PECA 1O8KA 4OZZA 2VBEA 1X0CA 1IDJA 1O8HA 4YZ0A 1RU4A 4AVZA 5C1EA 3KRGA 4Z03A 4NK6A 4OZYA 1O8GA 4U4BA 1O88A 2INVA 4YELA 2PYGA 2X6YA 3VMWA 4YZQA 4YZXA 3GQAA 4XQFA 4XMYA 2X85A 2INUA 3ZSCA 2Z8GA 3JURA 1OFMA 2NT9A 4PMHA 1O8EA 1BN8A 2O0WA 2VJJA 1H80A 1O8IA 3VSUA 1HG8A 1PXZA 1KCCA 4OJ5A 4XOPA 3B90A 1VBLA 3VMVA 2O04A 3B8YA 4EW9A 4XNFA 4W8QA 3GQ8A
chains in the Genus database with same CATH superfamily
1JRGA 1PLUA 4XM3A 2NTBA 2QX3A 3JX8A 3LJYA 2YUHA 3VSVA 3PETA 3FY3A 4XR6A 1O8DA 1WMRA 4YC5A 4XN3A 5C1CA 4NK8A 3SYJA 4XL9A 2BX6A 2B0RA 4XKWA 4YEJA 1O8MA 1QRBA 1QQ1A 2VBMA 1AIRA 3EQNA 3GQ9A 2VFMA 4OJPA 1RMGA 4MXNA 3DU1X 4OPWA 1RWRA 4YZAA 3SY2A 2BM6A 2BM5A 3PSZA 4XLFA 1BHEA 1OGOX 3GQ7A 1DBOA 5JLVC 3TH0A 1CZFA 2O17A 2QXZA 4YDTA 3NAWA 4URRA 2XT4A 1OFLA 4XORA 1PE9A 1QRCA 1OGMX 5AMVA 3RIQA 3H09A 4OJOA 2NTPA 1IB4A 4XONA 2J8IA 2O1DA 2VBKA 4XLAA 4XN0A 2PYHA 2X6XA 1OOCA 1O8LA 1XG2A 4Z06A 1QA2A 1IA5A 4I84A 3WWGA 3BH7B 1LLZA 2NSPA 2O6WA 2XTXA 4W8RA 1K5CA 1O8FA 3LMWA 3SQVA 4YFOA 3VSTA 4YEIA 2ODLA 1TYXA 1OFEA 4HWVA 2BSPA 2QZAA 2UVFA 2NTQA 2NT6A 2XTWA 2NSTA 4XLEA 1KTWA 1TYVA 1NHCA 3EQOA 1EE6A 1GQ8A 2XT2A 4OJ6A 4W8TA 1KQ5A 3SUCA 3B4NA 1TYUA 1K4ZA 2IQ7A 4XKVA 4XOTA 1DABA 2G0YA 3UW0A 1KCDA 1CLWA 1QA1A 2X6WA 1JTAA 2UVEA 1QJVA 4XLCA 3BH6B 1DBGA 4C2LA 2BM7A 4Z05A 2VFPA 4OJLA 4U49A 1O8JA 2W7ZA 3T9GA 1QA3A 1OFDA 3GRHA 4XLHA 3PSSA 2NZMA 1HF2A 1IDKA 2O0VA 3P4GA 2VJIA 3ZPPA 2QY1A 3N90A 2VFNA 2X3HA 4KH3A 4MR0A 1QCXA 2EWEA 2IOUG 1EA0A 1K8FA 4W8SA 2PECA 1O8KA 2F3LA 4OZZA 2BM4A 2VBEA 1X0CA 2XTYA 3SZEA 1IDJA 1O8HA 1WXRA 3N6ZA 4YZ0A 1RU4A 4V02C 4XNFA 4AVZA 5C1EA 3KRGA 4Z03A 1LLWA 4NK6A 4OZYA 4OM9A 1O8GA 3NB2A 1O88A 2INVA 4U4BA 2VFOA 4YELA 2PYGA 2X6YA 3VMWA 4YZQA 4YZXA 3GQAA 5JMCB 4XQFA 4XMYA 2X85A 2INUA 2QYUA 3ZSCA 2Z8GA 3JURA 3ML3A 3AK5A 1OFMA 2NT9A 4PMHA 1O8EA 1L1IA 1BN8A 2O0WA 2VJJA 1EZGA 1H80A 1O8IA 4YCQA 3VSUA 1LM1A 1HG8A 2VFQA 2XC1A 1PXZA 1TSPA 3LYCA 1KCCA 4OJ5A 4XOPA 3B90A 1VBLA 1TYWA 2J8KA 5DNSA 2O04A 3B8YA 3VMVA 4EW9A 2V5IA 4W8QA 4JRAC 3GQ8A
chains in the Genus database with same CATH topology
1JRGA 1PLUA 4XM3A 2NTBA 2QX3A 3VSVA 3FY3A 4XR6A 1O8DA 1WMRA 4XN3A 5C1CA 4NK8A 4XL9A 4XKWA 4YEJA 1O8MA 3GQ9A 2VBMA 1AIRA 3EQNA 4OJPA 1RMGA 4MXNA 4YZAA 1RWRA 4XLFA 1BHEA 1OGOX 3GQ7A 1DBOA 1CZFA 2O17A 2QXZA 4URRA 1OFLA 4XORA 1PE9A 1OGMX 5AMVA 4OJOA 2NTPA 1IB4A 4XONA 2O1DA 2VBKA 4XLAA 4XN0A 2PYHA 2X6XA 1OOCA 1O8LA 1XG2A 4Z06A 1IA5A 4I84A 3WWGA 2NSPA 4W8RA 1K5CA 1O8FA 3LMWA 3VSTA 2ODLA 4HWVA 2BSPA 2UVFA 2NTQA 2NT6A 2NSTA 4XLEA 1KTWA 1NHCA 3EQOA 1EE6A 1GQ8A 4OJ6A 4W8TA 3B4NA 2IQ7A 4XOTA 4XKVA 1KCDA 3UW0A 2X6WA 1JTAA 2UVEA 1QJVA 4XLCA 1DBGA 4C2LA 4Z05A 4OJLA 4U49A 1O8JA 3T9GA 3SUCA 3GRHA 4XLHA 3ZPPA 2NZMA 1IDKA 2O0VA 2VJIA 2QY1A 2X3HA 4MR0A 1QCXA 2EWEA 4W8SA 2PECA 1O8KA 4OZZA 2VBEA 1X0CA 1IDJA 1O8HA 4YZ0A 1RU4A 4AVZA 5C1EA 3KRGA 4Z03A 4NK6A 4OZYA 1O8GA 4U4BA 1O88A 2INVA 4YELA 2PYGA 2X6YA 3VMWA 4YZQA 4YZXA 3GQAA 4XQFA 4XMYA 2X85A 2INUA 3ZSCA 2Z8GA 3JURA 1OFMA 2NT9A 4PMHA 1O8EA 1BN8A 2O0WA 2VJJA 1H80A 1O8IA 3VSUA 1HG8A 1PXZA 1KCCA 4OJ5A 4XOPA 3B90A 1VBLA 3VMVA 2O04A 3B8YA 4EW9A 4XNFA 4W8QA 3GQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JRG A;  1PLU A;  4XM3 A;  2NTB A;  2QX3 A;  3VSV A;  3FY3 A;  4XR6 A;  1O8D A;  1WMR A;  4XN3 A;  5C1C A;  4NK8 A;  4XL9 A;  4XKW A;  4YEJ A;  1O8M A;  3GQ9 A;  2VBM A;  1AIR A;  3EQN A;  4OJP A;  1RMG A;  4MXN A;  4YZA A;  1RWR A;  4XLF A;  1BHE A;  1OGO X;  3GQ7 A;  1DBO A;  1CZF A;  2O17 A;  2QXZ A;  4URR A;  1OFL A;  4XOR A;  1PE9 A;  1OGM X;  5AMV A;  4OJO A;  2NTP A;  1IB4 A;  4XON A;  2O1D A;  2VBK A;  4XLA A;  4XN0 A;  2PYH A;  2X6X A;  1OOC A;  1O8L A;  1XG2 A;  4Z06 A;  1IA5 A;  4I84 A;  3WWG A;  2NSP A;  4W8R A;  1K5C A;  1O8F A;  3LMW A;  3VST A;  2ODL A;  4HWV A;  2BSP A;  2UVF A;  2NTQ A;  2NT6 A;  2NST A;  4XLE A;  1KTW A;  1NHC A;  3EQO A;  1EE6 A;  1GQ8 A;  4OJ6 A;  4W8T A;  3B4N A;  2IQ7 A;  4XOT A;  4XKV A;  1KCD A;  3UW0 A;  2X6W A;  1JTA A;  2UVE A;  1QJV A;  4XLC A;  1DBG A;  4C2L A;  4Z05 A;  4OJL A;  4U49 A;  1O8J A;  3T9G A;  3SUC A;  3GRH A;  4XLH A;  3ZPP A;  2NZM A;  1IDK A;  2O0V A;  2VJI A;  2QY1 A;  2X3H A;  4MR0 A;  1QCX A;  2EWE A;  4W8S A;  2PEC A;  1O8K A;  4OZZ A;  2VBE A;  1X0C A;  1IDJ A;  1O8H A;  4YZ0 A;  1RU4 A;  4AVZ A;  5C1E A;  3KRG A;  4Z03 A;  4NK6 A;  4OZY A;  1O8G A;  4U4B A;  1O88 A;  2INV A;  4YEL A;  2PYG A;  2X6Y A;  3VMW A;  4YZQ A;  4YZX A;  3GQA A;  4XQF A;  4XMY A;  2X85 A;  2INU A;  3ZSC A;  2Z8G A;  3JUR A;  1OFM A;  2NT9 A;  4PMH A;  1O8E A;  1BN8 A;  2O0W A;  2VJJ A;  1H80 A;  1O8I A;  3VSU A;  1HG8 A;  1PXZ A;  1KCC A;  4OJ5 A;  4XOP A;  3B90 A;  1VBL A;  3VMV A;  2O04 A;  3B8Y A;  4EW9 A;  4XNF A;  4W8Q A;  3GQ8 A; 
#chains in the Genus database with same CATH topology
 1JRG A;  1PLU A;  4XM3 A;  2NTB A;  2QX3 A;  3JX8 A;  3LJY A;  2YUH A;  3VSV A;  3PET A;  3FY3 A;  4XR6 A;  1O8D A;  1WMR A;  4YC5 A;  4XN3 A;  5C1C A;  4NK8 A;  3SYJ A;  4XL9 A;  2BX6 A;  2B0R A;  4XKW A;  4YEJ A;  1O8M A;  1QRB A;  1QQ1 A;  2VBM A;  1AIR A;  3EQN A;  3GQ9 A;  2VFM A;  4OJP A;  1RMG A;  4MXN A;  3DU1 X;  4OPW A;  1RWR A;  4YZA A;  3SY2 A;  2BM6 A;  2BM5 A;  3PSZ A;  4XLF A;  1BHE A;  1OGO X;  3GQ7 A;  1DBO A;  5JLV C;  3TH0 A;  1CZF A;  2O17 A;  2QXZ A;  4YDT A;  3NAW A;  4URR A;  2XT4 A;  1OFL A;  4XOR A;  1PE9 A;  1QRC A;  1OGM X;  5AMV A;  3RIQ A;  3H09 A;  4OJO A;  2NTP A;  1IB4 A;  4XON A;  2J8I A;  2O1D A;  2VBK A;  4XLA A;  4XN0 A;  2PYH A;  2X6X A;  1OOC A;  1O8L A;  1XG2 A;  4Z06 A;  1QA2 A;  1IA5 A;  4I84 A;  3WWG A;  3BH7 B;  1LLZ A;  2NSP A;  2O6W A;  2XTX A;  4W8R A;  1K5C A;  1O8F A;  3LMW A;  3SQV A;  4YFO A;  3VST A;  4YEI A;  2ODL A;  1TYX A;  1OFE A;  4HWV A;  2BSP A;  2QZA A;  2UVF A;  2NTQ A;  2NT6 A;  2XTW A;  2NST A;  4XLE A;  1KTW A;  1TYV A;  1NHC A;  3EQO A;  1EE6 A;  1GQ8 A;  2XT2 A;  4OJ6 A;  4W8T A;  1KQ5 A;  3SUC A;  3B4N A;  1TYU A;  1K4Z A;  2IQ7 A;  4XKV A;  4XOT A;  1DAB A;  2G0Y A;  3UW0 A;  1KCD A;  1CLW A;  1QA1 A;  2X6W A;  1JTA A;  2UVE A;  1QJV A;  4XLC A;  3BH6 B;  1DBG A;  4C2L A;  2BM7 A;  4Z05 A;  2VFP A;  4OJL A;  4U49 A;  1O8J A;  2W7Z A;  3T9G A;  1QA3 A;  1OFD A;  3GRH A;  4XLH A;  3PSS A;  2NZM A;  1HF2 A;  1IDK A;  2O0V A;  3P4G A;  2VJI A;  3ZPP A;  2QY1 A;  3N90 A;  2VFN A;  2X3H A;  4KH3 A;  4MR0 A;  1QCX A;  2EWE A;  2IOU G;  1EA0 A;  1K8F A;  4W8S A;  2PEC A;  1O8K A;  2F3L A;  4OZZ A;  2BM4 A;  2VBE A;  1X0C A;  2XTY A;  3SZE A;  1IDJ A;  1O8H A;  1WXR A;  3N6Z A;  4YZ0 A;  1RU4 A;  4V02 C;  4XNF A;  4AVZ A;  5C1E A;  3KRG A;  4Z03 A;  1LLW A;  4NK6 A;  4OZY A;  4OM9 A;  1O8G A;  3NB2 A;  1O88 A;  2INV A;  4U4B A;  2VFO A;  4YEL A;  2PYG A;  2X6Y A;  3VMW A;  4YZQ A;  4YZX A;  3GQA A;  5JMC B;  4XQF A;  4XMY A;  2X85 A;  2INU A;  2QYU A;  3ZSC A;  2Z8G A;  3JUR A;  3ML3 A;  3AK5 A;  1OFM A;  2NT9 A;  4PMH A;  1O8E A;  1L1I A;  1BN8 A;  2O0W A;  2VJJ A;  1EZG A;  1H80 A;  1O8I A;  4YCQ A;  3VSU A;  1LM1 A;  1HG8 A;  2VFQ A;  2XC1 A;  1PXZ A;  1TSP A;  3LYC A;  1KCC A;  4OJ5 A;  4XOP A;  3B90 A;  1VBL A;  1TYW A;  2J8K A;  5DNS A;  2O04 A;  3B8Y A;  3VMV A;  4EW9 A;  2V5I A;  4W8Q A;  4JRA C;  3GQ8 A; 
#chains in the Genus database with same CATH homology
 1JRG A;  1PLU A;  4XM3 A;  2NTB A;  2QX3 A;  3VSV A;  3FY3 A;  4XR6 A;  1O8D A;  1WMR A;  4XN3 A;  5C1C A;  4NK8 A;  4XL9 A;  4XKW A;  4YEJ A;  1O8M A;  3GQ9 A;  2VBM A;  1AIR A;  3EQN A;  4OJP A;  1RMG A;  4MXN A;  4YZA A;  1RWR A;  4XLF A;  1BHE A;  1OGO X;  3GQ7 A;  1DBO A;  1CZF A;  2O17 A;  2QXZ A;  4URR A;  1OFL A;  4XOR A;  1PE9 A;  1OGM X;  5AMV A;  4OJO A;  2NTP A;  1IB4 A;  4XON A;  2O1D A;  2VBK A;  4XLA A;  4XN0 A;  2PYH A;  2X6X A;  1OOC A;  1O8L A;  1XG2 A;  4Z06 A;  1IA5 A;  4I84 A;  3WWG A;  2NSP A;  4W8R A;  1K5C A;  1O8F A;  3LMW A;  3VST A;  2ODL A;  4HWV A;  2BSP A;  2UVF A;  2NTQ A;  2NT6 A;  2NST A;  4XLE A;  1KTW A;  1NHC A;  3EQO A;  1EE6 A;  1GQ8 A;  4OJ6 A;  4W8T A;  3B4N A;  2IQ7 A;  4XOT A;  4XKV A;  1KCD A;  3UW0 A;  2X6W A;  1JTA A;  2UVE A;  1QJV A;  4XLC A;  1DBG A;  4C2L A;  4Z05 A;  4OJL A;  4U49 A;  1O8J A;  3T9G A;  3SUC A;  3GRH A;  4XLH A;  3ZPP A;  2NZM A;  1IDK A;  2O0V A;  2VJI A;  2QY1 A;  2X3H A;  4MR0 A;  1QCX A;  2EWE A;  4W8S A;  2PEC A;  1O8K A;  4OZZ A;  2VBE A;  1X0C A;  1IDJ A;  1O8H A;  4YZ0 A;  1RU4 A;  4AVZ A;  5C1E A;  3KRG A;  4Z03 A;  4NK6 A;  4OZY A;  1O8G A;  4U4B A;  1O88 A;  2INV A;  4YEL A;  2PYG A;  2X6Y A;  3VMW A;  4YZQ A;  4YZX A;  3GQA A;  4XQF A;  4XMY A;  2X85 A;  2INU A;  3ZSC A;  2Z8G A;  3JUR A;  1OFM A;  2NT9 A;  4PMH A;  1O8E A;  1BN8 A;  2O0W A;  2VJJ A;  1H80 A;  1O8I A;  3VSU A;  1HG8 A;  1PXZ A;  1KCC A;  4OJ5 A;  4XOP A;  3B90 A;  1VBL A;  3VMV A;  2O04 A;  3B8Y A;  4EW9 A;  4XNF A;  4W8Q A;  3GQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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