1OFMA

Crystal structure of chondroitinase b complexed to chondroitin 4-sulfate tetrasaccharide
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
481
structure length
481
Chain Sequence
EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords CHONDROITINASE B
publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
source organism Pedobacter heparinus
total genus 183
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ofmA00
2NT9A 2UVFA 3EQNA 1DBOA 4W8RA 4XQFA 1O88A 1VBLA 4XKVA 1DBGA 1AIRA 2X6WA 2QXZA 1O8MA 1RU4A 4NK8A 4NK6A 4OJLA 3FY3A 4YZXA 2VJJA 2X6YA 3JURA 4OJPA 4W8TA 1RMGA 2VBKA 4XNFA 1GQ8A 4XOPA 4YZQA 2VBMA 3B8YA 3GQ7A 4XONA 1JRGA 4XKWA 1EE6A 1HG8A 3GQAA 1O8GA 4YZ0A 1KTWA 2UVEA 3GRHA 1QJVA 4XM3A 1CZFA 4URRA 2Z8GA 4HWVA 2O0VA 5C1CA 3GQ9A 3B4NA 1WMRA 2ODLA 3WWGA 2BSPA 2QX3A 2X85A 2PECA 2INUA 4OZYA 1O8LA 2NZMA 3VMWA 3LMWA 2PYGA 4PMHA 4U49A 4OJ6A 4EW9A 1BHEA 4XR6A 4XORA 4MXNA 3VSUA 1IDKA 2PYHA 4XLAA 4XMYA 2NTPA 2NTBA 1RWRA 2NT6A 3ZPPA 4C2LA 1H80A 5C1EA 2VJIA 4I84A 1X0CA 5AMVA 4MR0A 2IQ7A 3ZSCA 3UW0A 1PLUA 3B90A 1PXZA 1O8FA 2O1DA 1KCDA 4XLFA 4Z03A 2VBEA 1NHCA 3EQOA 4XL9A 4XOTA 4AVZA 2NSPA 2QY1A 1OGOX 3T9GA 4W8QA 2NSTA 1IA5A 2X3HA 3SUCA 4YELA 2O17A 3VSTA 1IDJA 1BN8A 2EWEA 4XN0A 1PE9A 1K5CA 1QCXA 2X6XA 3VSVA 4XN3A 1O8EA 1O8IA 3KRGA 1OOCA 1XG2A 1O8KA 4XLEA 1IB4A 4W8SA 4XLHA 1O8HA 4OZZA 2O04A 4YZAA 2NTQA 4YEJA 4XLCA 4OJOA 1OFLA 2O0WA 4OJ5A 4Z05A 4Z06A 1KCCA 1O8DA 1JTAA 1O8JA 3VMVA 1OFMA 3GQ8A 2INVA 4U4BA 1OGMX
chains in the Genus database with same CATH superfamily
2NT9A 2UVFA 3EQNA 1DBOA 2G0YA 4W8RA 4XQFA 1K8FA 1O88A 1TYUA 1VBLA 4XKVA 1DBGA 2YUHA 1AIRA 2X6WA 2VFMA 2QXZA 1O8MA 1RU4A 4NK8A 4NK6A 4OJLA 3FY3A 4YZXA 5DNSA 2VJJA 2X6YA 1DABA 5JLVC 3JURA 4OJPA 4W8TA 1RMGA 2VBKA 4XNFA 1GQ8A 4XOPA 4YZQA 2VBMA 2BM7A 2XTWA 3B8YA 3BH6B 2VFNA 4OPWA 2XT4A 4YFOA 3GQ7A 1WXRA 4XONA 1JRGA 4XKWA 1EE6A 1HG8A 2W7ZA 3GQAA 1O8GA 4YZ0A 1KTWA 2UVEA 2QYUA 3GRHA 1QJVA 4XM3A 1CZFA 4URRA 2Z8GA 4HWVA 2O0VA 5C1CA 1OFDA 2BX6A 2BM5A 3B4NA 3GQ9A 1WMRA 2ODLA 3RIQA 3WWGA 4OM9A 2BSPA 2QX3A 2X85A 1CLWA 2PECA 3TH0A 2INUA 3LYCA 4OZYA 1O8LA 1TYVA 2NZMA 3VMWA 1L1IA 3LMWA 2PYGA 2VFOA 4PMHA 2QZAA 4U49A 4OJ6A 4EW9A 4KH3A 1BHEA 4YDTA 4XR6A 4XORA 4YC5A 2VFQA 2J8IA 4MXNA 3VSUA 2J8KA 1IDKA 2PYHA 4XLAA 4XMYA 2NTPA 2IOUG 1QA2A 1QA3A 2NTBA 1RWRA 1QA1A 2NT6A 2V5IA 3BH7B 1K4ZA 3ZPPA 4C2LA 3AK5A 1H80A 5C1EA 1LLWA 2VJIA 3ML3A 3NB2A 4I84A 1X0CA 2O6WA 5AMVA 4MR0A 2IQ7A 3ZSCA 4JRAC 3UW0A 1OFEA 1PLUA 3B90A 2XTYA 1PXZA 1O8FA 3SZEA 2XT2A 2O1DA 1QRBA 1KCDA 1EA0A 4XLFA 4Z03A 3SY2A 1QQ1A 2VBEA 3NAWA 3EQOA 1NHCA 1TSPA 1LLZA 4XL9A 2NSPA 2QY1A 3H09A 4XOTA 4AVZA 1OGOX 1TYWA 3T9GA 4W8QA 1LM1A 2NSTA 1IA5A 2X3HA 2BM6A 3SUCA 4YELA 2O17A 3VSTA 1IDJA 3N6ZA 1BN8A 2EWEA 2XC1A 4XN0A 1PE9A 1K5CA 1QCXA 2X6XA 1QRCA 1EZGA 3LJYA 4XN3A 3VSVA 1TYXA 1O8EA 1O8IA 3KRGA 3PSSA 1OOCA 1XG2A 4YCQA 1O8KA 4XLEA 1IB4A 4W8SA 2VFPA 4XLHA 1O8HA 3PETA 4OZZA 2O04A 4YEIA 3DU1X 1HF2A 2B0RA 4YZAA 2NTQA 2XTXA 4YEJA 4XLCA 4OJOA 1OFLA 2O0WA 4OJ5A 4Z05A 3SYJA 4Z06A 1KCCA 1O8DA 2BM4A 1JTAA 1O8JA 3VMVA 3N90A 1OFMA 3PSZA 3GQ8A 3SQVA 1KQ5A 2INVA 1OGMX 4U4BA 4V02C 5JMCB 2F3LA 3P4GA 3JX8A
chains in the Genus database with same CATH topology
2NT9A 2UVFA 3EQNA 1DBOA 4W8RA 4XQFA 1O88A 1VBLA 4XKVA 1DBGA 1AIRA 2X6WA 2QXZA 1O8MA 1RU4A 4NK8A 4NK6A 4OJLA 3FY3A 4YZXA 2VJJA 2X6YA 3JURA 4OJPA 4W8TA 1RMGA 2VBKA 4XNFA 1GQ8A 4XOPA 4YZQA 2VBMA 3B8YA 3GQ7A 4XONA 1JRGA 4XKWA 1EE6A 1HG8A 3GQAA 1O8GA 4YZ0A 1KTWA 2UVEA 3GRHA 1QJVA 4XM3A 1CZFA 4URRA 2Z8GA 4HWVA 2O0VA 5C1CA 3GQ9A 3B4NA 1WMRA 2ODLA 3WWGA 2BSPA 2QX3A 2X85A 2PECA 2INUA 4OZYA 1O8LA 2NZMA 3VMWA 3LMWA 2PYGA 4PMHA 4U49A 4OJ6A 4EW9A 1BHEA 4XR6A 4XORA 4MXNA 3VSUA 1IDKA 2PYHA 4XLAA 4XMYA 2NTPA 2NTBA 1RWRA 2NT6A 3ZPPA 4C2LA 1H80A 5C1EA 2VJIA 4I84A 1X0CA 5AMVA 4MR0A 2IQ7A 3ZSCA 3UW0A 1PLUA 3B90A 1PXZA 1O8FA 2O1DA 1KCDA 4XLFA 4Z03A 2VBEA 1NHCA 3EQOA 4XL9A 4XOTA 4AVZA 2NSPA 2QY1A 1OGOX 3T9GA 4W8QA 2NSTA 1IA5A 2X3HA 3SUCA 4YELA 2O17A 3VSTA 1IDJA 1BN8A 2EWEA 4XN0A 1PE9A 1K5CA 1QCXA 2X6XA 3VSVA 4XN3A 1O8EA 1O8IA 3KRGA 1OOCA 1XG2A 1O8KA 4XLEA 1IB4A 4W8SA 4XLHA 1O8HA 4OZZA 2O04A 4YZAA 2NTQA 4YEJA 4XLCA 4OJOA 1OFLA 2O0WA 4OJ5A 4Z05A 4Z06A 1KCCA 1O8DA 1JTAA 1O8JA 3VMVA 1OFMA 3GQ8A 2INVA 4U4BA 1OGMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NT9 A;  2UVF A;  3EQN A;  1DBO A;  4W8R A;  4XQF A;  1O88 A;  1VBL A;  4XKV A;  1DBG A;  1AIR A;  2X6W A;  2QXZ A;  1O8M A;  1RU4 A;  4NK8 A;  4NK6 A;  4OJL A;  3FY3 A;  4YZX A;  2VJJ A;  2X6Y A;  3JUR A;  4OJP A;  4W8T A;  1RMG A;  2VBK A;  4XNF A;  1GQ8 A;  4XOP A;  4YZQ A;  2VBM A;  3B8Y A;  3GQ7 A;  4XON A;  1JRG A;  4XKW A;  1EE6 A;  1HG8 A;  3GQA A;  1O8G A;  4YZ0 A;  1KTW A;  2UVE A;  3GRH A;  1QJV A;  4XM3 A;  1CZF A;  4URR A;  2Z8G A;  4HWV A;  2O0V A;  5C1C A;  3GQ9 A;  3B4N A;  1WMR A;  2ODL A;  3WWG A;  2BSP A;  2QX3 A;  2X85 A;  2PEC A;  2INU A;  4OZY A;  1O8L A;  2NZM A;  3VMW A;  3LMW A;  2PYG A;  4PMH A;  4U49 A;  4OJ6 A;  4EW9 A;  1BHE A;  4XR6 A;  4XOR A;  4MXN A;  3VSU A;  1IDK A;  2PYH A;  4XLA A;  4XMY A;  2NTP A;  2NTB A;  1RWR A;  2NT6 A;  3ZPP A;  4C2L A;  1H80 A;  5C1E A;  2VJI A;  4I84 A;  1X0C A;  5AMV A;  4MR0 A;  2IQ7 A;  3ZSC A;  3UW0 A;  1PLU A;  3B90 A;  1PXZ A;  1O8F A;  2O1D A;  1KCD A;  4XLF A;  4Z03 A;  2VBE A;  1NHC A;  3EQO A;  4XL9 A;  4XOT A;  4AVZ A;  2NSP A;  2QY1 A;  1OGO X;  3T9G A;  4W8Q A;  2NST A;  1IA5 A;  2X3H A;  3SUC A;  4YEL A;  2O17 A;  3VST A;  1IDJ A;  1BN8 A;  2EWE A;  4XN0 A;  1PE9 A;  1K5C A;  1QCX A;  2X6X A;  3VSV A;  4XN3 A;  1O8E A;  1O8I A;  3KRG A;  1OOC A;  1XG2 A;  1O8K A;  4XLE A;  1IB4 A;  4W8S A;  4XLH A;  1O8H A;  4OZZ A;  2O04 A;  4YZA A;  2NTQ A;  4YEJ A;  4XLC A;  4OJO A;  1OFL A;  2O0W A;  4OJ5 A;  4Z05 A;  4Z06 A;  1KCC A;  1O8D A;  1JTA A;  1O8J A;  3VMV A;  1OFM A;  3GQ8 A;  2INV A;  4U4B A;  1OGM X; 
#chains in the Genus database with same CATH topology
 2NT9 A;  2UVF A;  3EQN A;  1DBO A;  2G0Y A;  4W8R A;  4XQF A;  1K8F A;  1O88 A;  1TYU A;  1VBL A;  4XKV A;  1DBG A;  2YUH A;  1AIR A;  2X6W A;  2VFM A;  2QXZ A;  1O8M A;  1RU4 A;  4NK8 A;  4NK6 A;  4OJL A;  3FY3 A;  4YZX A;  5DNS A;  2VJJ A;  2X6Y A;  1DAB A;  5JLV C;  3JUR A;  4OJP A;  4W8T A;  1RMG A;  2VBK A;  4XNF A;  1GQ8 A;  4XOP A;  4YZQ A;  2VBM A;  2BM7 A;  2XTW A;  3B8Y A;  3BH6 B;  2VFN A;  4OPW A;  2XT4 A;  4YFO A;  3GQ7 A;  1WXR A;  4XON A;  1JRG A;  4XKW A;  1EE6 A;  1HG8 A;  2W7Z A;  3GQA A;  1O8G A;  4YZ0 A;  1KTW A;  2UVE A;  2QYU A;  3GRH A;  1QJV A;  4XM3 A;  1CZF A;  4URR A;  2Z8G A;  4HWV A;  2O0V A;  5C1C A;  1OFD A;  2BX6 A;  2BM5 A;  3B4N A;  3GQ9 A;  1WMR A;  2ODL A;  3RIQ A;  3WWG A;  4OM9 A;  2BSP A;  2QX3 A;  2X85 A;  1CLW A;  2PEC A;  3TH0 A;  2INU A;  3LYC A;  4OZY A;  1O8L A;  1TYV A;  2NZM A;  3VMW A;  1L1I A;  3LMW A;  2PYG A;  2VFO A;  4PMH A;  2QZA A;  4U49 A;  4OJ6 A;  4EW9 A;  4KH3 A;  1BHE A;  4YDT A;  4XR6 A;  4XOR A;  4YC5 A;  2VFQ A;  2J8I A;  4MXN A;  3VSU A;  2J8K A;  1IDK A;  2PYH A;  4XLA A;  4XMY A;  2NTP A;  2IOU G;  1QA2 A;  1QA3 A;  2NTB A;  1RWR A;  1QA1 A;  2NT6 A;  2V5I A;  3BH7 B;  1K4Z A;  3ZPP A;  4C2L A;  3AK5 A;  1H80 A;  5C1E A;  1LLW A;  2VJI A;  3ML3 A;  3NB2 A;  4I84 A;  1X0C A;  2O6W A;  5AMV A;  4MR0 A;  2IQ7 A;  3ZSC A;  4JRA C;  3UW0 A;  1OFE A;  1PLU A;  3B90 A;  2XTY A;  1PXZ A;  1O8F A;  3SZE A;  2XT2 A;  2O1D A;  1QRB A;  1KCD A;  1EA0 A;  4XLF A;  4Z03 A;  3SY2 A;  1QQ1 A;  2VBE A;  3NAW A;  3EQO A;  1NHC A;  1TSP A;  1LLZ A;  4XL9 A;  2NSP A;  2QY1 A;  3H09 A;  4XOT A;  4AVZ A;  1OGO X;  1TYW A;  3T9G A;  4W8Q A;  1LM1 A;  2NST A;  1IA5 A;  2X3H A;  2BM6 A;  3SUC A;  4YEL A;  2O17 A;  3VST A;  1IDJ A;  3N6Z A;  1BN8 A;  2EWE A;  2XC1 A;  4XN0 A;  1PE9 A;  1K5C A;  1QCX A;  2X6X A;  1QRC A;  1EZG A;  3LJY A;  4XN3 A;  3VSV A;  1TYX A;  1O8E A;  1O8I A;  3KRG A;  3PSS A;  1OOC A;  1XG2 A;  4YCQ A;  1O8K A;  4XLE A;  1IB4 A;  4W8S A;  2VFP A;  4XLH A;  1O8H A;  3PET A;  4OZZ A;  2O04 A;  4YEI A;  3DU1 X;  1HF2 A;  2B0R A;  4YZA A;  2NTQ A;  2XTX A;  4YEJ A;  4XLC A;  4OJO A;  1OFL A;  2O0W A;  4OJ5 A;  4Z05 A;  3SYJ A;  4Z06 A;  1KCC A;  1O8D A;  2BM4 A;  1JTA A;  1O8J A;  3VMV A;  3N90 A;  1OFM A;  3PSZ A;  3GQ8 A;  3SQV A;  1KQ5 A;  2INV A;  1OGM X;  4U4B A;  4V02 C;  5JMC B;  2F3L A;  3P4G A;  3JX8 A; 
#chains in the Genus database with same CATH homology
 2NT9 A;  2UVF A;  3EQN A;  1DBO A;  4W8R A;  4XQF A;  1O88 A;  1VBL A;  4XKV A;  1DBG A;  1AIR A;  2X6W A;  2QXZ A;  1O8M A;  1RU4 A;  4NK8 A;  4NK6 A;  4OJL A;  3FY3 A;  4YZX A;  2VJJ A;  2X6Y A;  3JUR A;  4OJP A;  4W8T A;  1RMG A;  2VBK A;  4XNF A;  1GQ8 A;  4XOP A;  4YZQ A;  2VBM A;  3B8Y A;  3GQ7 A;  4XON A;  1JRG A;  4XKW A;  1EE6 A;  1HG8 A;  3GQA A;  1O8G A;  4YZ0 A;  1KTW A;  2UVE A;  3GRH A;  1QJV A;  4XM3 A;  1CZF A;  4URR A;  2Z8G A;  4HWV A;  2O0V A;  5C1C A;  3GQ9 A;  3B4N A;  1WMR A;  2ODL A;  3WWG A;  2BSP A;  2QX3 A;  2X85 A;  2PEC A;  2INU A;  4OZY A;  1O8L A;  2NZM A;  3VMW A;  3LMW A;  2PYG A;  4PMH A;  4U49 A;  4OJ6 A;  4EW9 A;  1BHE A;  4XR6 A;  4XOR A;  4MXN A;  3VSU A;  1IDK A;  2PYH A;  4XLA A;  4XMY A;  2NTP A;  2NTB A;  1RWR A;  2NT6 A;  3ZPP A;  4C2L A;  1H80 A;  5C1E A;  2VJI A;  4I84 A;  1X0C A;  5AMV A;  4MR0 A;  2IQ7 A;  3ZSC A;  3UW0 A;  1PLU A;  3B90 A;  1PXZ A;  1O8F A;  2O1D A;  1KCD A;  4XLF A;  4Z03 A;  2VBE A;  1NHC A;  3EQO A;  4XL9 A;  4XOT A;  4AVZ A;  2NSP A;  2QY1 A;  1OGO X;  3T9G A;  4W8Q A;  2NST A;  1IA5 A;  2X3H A;  3SUC A;  4YEL A;  2O17 A;  3VST A;  1IDJ A;  1BN8 A;  2EWE A;  4XN0 A;  1PE9 A;  1K5C A;  1QCX A;  2X6X A;  3VSV A;  4XN3 A;  1O8E A;  1O8I A;  3KRG A;  1OOC A;  1XG2 A;  1O8K A;  4XLE A;  1IB4 A;  4W8S A;  4XLH A;  1O8H A;  4OZZ A;  2O04 A;  4YZA A;  2NTQ A;  4YEJ A;  4XLC A;  4OJO A;  1OFL A;  2O0W A;  4OJ5 A;  4Z05 A;  4Z06 A;  1KCC A;  1O8D A;  1JTA A;  1O8J A;  3VMV A;  1OFM A;  3GQ8 A;  2INV A;  4U4B A;  1OGM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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