4OZZA

Crystal structure of the periplasmic alginate epimerase algg t265n t268m double mutant
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
424
structure length
423
Chain Sequence
EMAKPVLPDLSGYTTEAALKKIARNKPGKITVARMMEETGLKEFIGDNKMAEWVVRQKGIPQAIMISDGYVNLQDLVKKVPKQFLSEVSPGVYVARLPILVKETGIFEIDSKTKELRLSQEKGSFIVSEGKMLITNTSVNAWSETRNGLAAYRTPDEFRPFVLTWGGSQTWIAKTKMASMGYNQSKSYGVSISQYNPNMAKVLKRGEPTGWIIDSEFADMWYGFYCYETRDFVVKGNTYRDNIVYGIDPHDRSHGLIIAENDVYGTKKKHGIIISREVDNSFIFRNKSHNNKLSGVVLDRNSVGNIVAYNEIYQNHTDGITLYESGNNLLWGNRVIANRRHGIRVRNSVNIKLYENVAMANGLMGVYGHIKDLNDTDRDIELDPFDAQVSLIMVGGELSSNGSGPLSIDSPLSVELYRVSMLM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Poly(beta-D-mannuronate) C5 epimerase
publication title Crystal Structure of the periplasmic alginate epimerase AlgG T265N T268M double mutant
rcsb
source organism Pseudomonas syringae pv. tomato
molecule tags Isomerase
total genus 169
structure length 423
sequence length 424
ec nomenclature ec 5.1.3.37: Mannuronan 5-epimerase.
pdb deposition date 2014-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4ozzA00
2NTPA 1RU4A 2ODLA 1PLUA 4XLAA 4YZAA 2INVA 3WWGA 4XN0A 1O8JA 4XM3A 3LMWA 4Z05A 1NHCA 4YZ0A 2NSTA 2NTBA 1AIRA 2UVEA 4NK8A 4YEJA 4W8RA 1H80A 1EE6A 3SUCA 2VBEA 1OFLA 3VMWA 4U4BA 4U49A 1VBLA 4YZXA 3VSUA 3T9GA 3ZPPA 2QY1A 3GQ9A 1OGMX 4XKWA 1QCXA 3B90A 4XOTA 4XLEA 1O88A 2INUA 2VJJA 3FY3A 2PYHA 4W8QA 3GQ8A 2QXZA 4OJ5A 1O8GA 2PYGA 4URRA 2BSPA 4W8TA 1JTAA 4NK6A 1O8IA 2X3HA 4OZZA 4YELA 1O8KA 3B8YA 3KRGA 4OJ6A 2O0WA 1GQ8A 1O8EA 3JURA 1IA5A 2QX3A 1OGOX 3UW0A 2NZMA 1OFMA 4XORA 3GQ7A 1KTWA 2NT6A 4XOPA 4OZYA 1KCCA 1DBGA 2X6WA 1O8MA 4XKVA 4XL9A 5AMVA 1PE9A 1O8FA 2IQ7A 2PECA 3EQOA 2X85A 1O8DA 3GQAA 4XLCA 1JRGA 1O8LA 1RMGA 4I84A 1QJVA 2O04A 4W8SA 2VJIA 4XN3A 2EWEA 4OJPA 4XMYA 4XNFA 4YZQA 3VSTA 1BHEA 1XG2A 1WMRA 4XLHA 1CZFA 1IDKA 1BN8A 2O17A 3VSVA 5C1EA 3VMVA 4EW9A 4MR0A 4OJOA 1RWRA 1HG8A 2VBKA 3EQNA 1DBOA 1X0CA 1OOCA 4AVZA 1PXZA 4OJLA 1IDJA 4XONA 2UVFA 2VBMA 4Z03A 4MXNA 3GRHA 4XLFA 4XQFA 1KCDA 4C2LA 2NTQA 4XR6A 2O0VA 4Z06A 2NSPA 1O8HA 2X6YA 5C1CA 1IB4A 3ZSCA 2X6XA 4PMHA 1K5CA 2NT9A 4HWVA 2O1DA 2Z8GA 3B4NA
chains in the Genus database with same CATH superfamily
2NTPA 1RU4A 2ODLA 1KQ5A 4YDTA 1PLUA 4XLAA 4YZAA 2INVA 3WWGA 4XN0A 1O8JA 4XM3A 1WXRA 3SQVA 3LYCA 3DU1X 3LMWA 2BM6A 2V5IA 4Z05A 1NHCA 1QA1A 3PSZA 4YZ0A 1EZGA 2NSTA 2NTBA 3BH7B 1HF2A 1AIRA 2UVEA 2F3LA 3PSSA 4NK8A 4YEJA 4W8RA 1H80A 1EE6A 3SUCA 2VBEA 1OFLA 2VFPA 3VMWA 3NAWA 4U4BA 3SYJA 4U49A 2IOUG 1LLWA 4YCQA 1VBLA 4YZXA 2QYUA 2J8IA 2YUHA 2QY1A 2XT2A 1OGMX 1TSPA 3GQ9A 3T9GA 3VSUA 4XKWA 1QCXA 3B90A 4XOTA 4XLEA 1CLWA 1O88A 2INUA 2VJJA 1QA2A 3FY3A 2PYHA 4W8QA 2VFNA 3GQ8A 2QXZA 4OJ5A 1O8GA 2PYGA 4URRA 3TH0A 2XC1A 2W7ZA 2XTYA 2XTWA 2BSPA 3JX8A 1JTAA 4NK6A 4W8TA 1O8IA 2BM7A 2X3HA 4OZZA 4YELA 3RIQA 1O8KA 3B8YA 4OPWA 3KRGA 4OJ6A 2O0WA 1GQ8A 1O8EA 3JURA 1K4ZA 4OM9A 1IA5A 2QX3A 1OGOX 3UW0A 5JLVC 1OFEA 2NZMA 1OFMA 4XORA 3GQ7A 1KTWA 2NT6A 4XOPA 1QRBA 4OZYA 4YC5A 1DBGA 1KCCA 2X6WA 1O8MA 2G0YA 4XKVA 4XL9A 2VFMA 3H09A 5AMVA 1PE9A 3SY2A 5DNSA 1O8FA 2IQ7A 3BH6B 2PECA 2QZAA 3EQOA 2X85A 1DABA 2XT4A 1O8DA 3GQAA 4XLCA 3N6ZA 1JRGA 1O8LA 1RMGA 4I84A 1QJVA 2O04A 4W8SA 1QQ1A 2VJIA 1TYUA 3AK5A 4XN3A 1OFDA 2EWEA 4OJPA 3SZEA 4XMYA 1EA0A 4XNFA 4YZQA 3VSTA 1BHEA 1QRCA 1XG2A 1WMRA 2B0RA 2BM5A 4XLHA 1TYWA 2XTXA 1CZFA 3PETA 1IDKA 1BN8A 2O17A 3VSVA 2VFOA 5C1EA 3VMVA 4EW9A 3ML3A 4MR0A 4OJOA 4YFOA 1LLZA 2BX6A 1RWRA 4KH3A 1HG8A 3ZPPA 1KCDA 1QA3A 2BM4A 3NB2A 2VBKA 3EQNA 1DBOA 2O6WA 1X0CA 1OOCA 2VFQA 4AVZA 1PXZA 1TYVA 3N90A 4OJLA 1TYXA 1IDJA 2J8KA 4JRAC 4XONA 2UVFA 2VBMA 4Z03A 4MXNA 3LJYA 3GRHA 1L1IA 4XLFA 4XQFA 3P4GA 1K8FA 2NTQA 4C2LA 1LM1A 2O0VA 4XR6A 2NSPA 1O8HA 2X6YA 4V02C 4Z06A 4YEIA 5C1CA 5JMCB 1IB4A 3ZSCA 2X6XA 4PMHA 1K5CA 2NT9A 4HWVA 2O1DA 2Z8GA 3B4NA
chains in the Genus database with same CATH topology
2NTPA 1RU4A 2ODLA 1PLUA 4XLAA 4YZAA 2INVA 3WWGA 4XN0A 1O8JA 4XM3A 3LMWA 4Z05A 1NHCA 4YZ0A 2NSTA 2NTBA 1AIRA 2UVEA 4NK8A 4YEJA 4W8RA 1H80A 1EE6A 3SUCA 2VBEA 1OFLA 3VMWA 4U4BA 4U49A 1VBLA 4YZXA 3VSUA 3T9GA 3ZPPA 2QY1A 3GQ9A 1OGMX 4XKWA 1QCXA 3B90A 4XOTA 4XLEA 1O88A 2INUA 2VJJA 3FY3A 2PYHA 4W8QA 3GQ8A 2QXZA 4OJ5A 1O8GA 2PYGA 4URRA 2BSPA 4W8TA 1JTAA 4NK6A 1O8IA 2X3HA 4OZZA 4YELA 1O8KA 3B8YA 3KRGA 4OJ6A 2O0WA 1GQ8A 1O8EA 3JURA 1IA5A 2QX3A 1OGOX 3UW0A 2NZMA 1OFMA 4XORA 3GQ7A 1KTWA 2NT6A 4XOPA 4OZYA 1KCCA 1DBGA 2X6WA 1O8MA 4XKVA 4XL9A 5AMVA 1PE9A 1O8FA 2IQ7A 2PECA 3EQOA 2X85A 1O8DA 3GQAA 4XLCA 1JRGA 1O8LA 1RMGA 4I84A 1QJVA 2O04A 4W8SA 2VJIA 4XN3A 2EWEA 4OJPA 4XMYA 4XNFA 4YZQA 3VSTA 1BHEA 1XG2A 1WMRA 4XLHA 1CZFA 1IDKA 1BN8A 2O17A 3VSVA 5C1EA 3VMVA 4EW9A 4MR0A 4OJOA 1RWRA 1HG8A 2VBKA 3EQNA 1DBOA 1X0CA 1OOCA 4AVZA 1PXZA 4OJLA 1IDJA 4XONA 2UVFA 2VBMA 4Z03A 4MXNA 3GRHA 4XLFA 4XQFA 1KCDA 4C2LA 2NTQA 4XR6A 2O0VA 4Z06A 2NSPA 1O8HA 2X6YA 5C1CA 1IB4A 3ZSCA 2X6XA 4PMHA 1K5CA 2NT9A 4HWVA 2O1DA 2Z8GA 3B4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NTP A;  1RU4 A;  2ODL A;  1PLU A;  4XLA A;  4YZA A;  2INV A;  3WWG A;  4XN0 A;  1O8J A;  4XM3 A;  3LMW A;  4Z05 A;  1NHC A;  4YZ0 A;  2NST A;  2NTB A;  1AIR A;  2UVE A;  4NK8 A;  4YEJ A;  4W8R A;  1H80 A;  1EE6 A;  3SUC A;  2VBE A;  1OFL A;  3VMW A;  4U4B A;  4U49 A;  1VBL A;  4YZX A;  3VSU A;  3T9G A;  3ZPP A;  2QY1 A;  3GQ9 A;  1OGM X;  4XKW A;  1QCX A;  3B90 A;  4XOT A;  4XLE A;  1O88 A;  2INU A;  2VJJ A;  3FY3 A;  2PYH A;  4W8Q A;  3GQ8 A;  2QXZ A;  4OJ5 A;  1O8G A;  2PYG A;  4URR A;  2BSP A;  4W8T A;  1JTA A;  4NK6 A;  1O8I A;  2X3H A;  4OZZ A;  4YEL A;  1O8K A;  3B8Y A;  3KRG A;  4OJ6 A;  2O0W A;  1GQ8 A;  1O8E A;  3JUR A;  1IA5 A;  2QX3 A;  1OGO X;  3UW0 A;  2NZM A;  1OFM A;  4XOR A;  3GQ7 A;  1KTW A;  2NT6 A;  4XOP A;  4OZY A;  1KCC A;  1DBG A;  2X6W A;  1O8M A;  4XKV A;  4XL9 A;  5AMV A;  1PE9 A;  1O8F A;  2IQ7 A;  2PEC A;  3EQO A;  2X85 A;  1O8D A;  3GQA A;  4XLC A;  1JRG A;  1O8L A;  1RMG A;  4I84 A;  1QJV A;  2O04 A;  4W8S A;  2VJI A;  4XN3 A;  2EWE A;  4OJP A;  4XMY A;  4XNF A;  4YZQ A;  3VST A;  1BHE A;  1XG2 A;  1WMR A;  4XLH A;  1CZF A;  1IDK A;  1BN8 A;  2O17 A;  3VSV A;  5C1E A;  3VMV A;  4EW9 A;  4MR0 A;  4OJO A;  1RWR A;  1HG8 A;  2VBK A;  3EQN A;  1DBO A;  1X0C A;  1OOC A;  4AVZ A;  1PXZ A;  4OJL A;  1IDJ A;  4XON A;  2UVF A;  2VBM A;  4Z03 A;  4MXN A;  3GRH A;  4XLF A;  4XQF A;  1KCD A;  4C2L A;  2NTQ A;  4XR6 A;  2O0V A;  4Z06 A;  2NSP A;  1O8H A;  2X6Y A;  5C1C A;  1IB4 A;  3ZSC A;  2X6X A;  4PMH A;  1K5C A;  2NT9 A;  4HWV A;  2O1D A;  2Z8G A;  3B4N A; 
#chains in the Genus database with same CATH topology
 2NTP A;  1RU4 A;  2ODL A;  1KQ5 A;  4YDT A;  1PLU A;  4XLA A;  4YZA A;  2INV A;  3WWG A;  4XN0 A;  1O8J A;  4XM3 A;  1WXR A;  3SQV A;  3LYC A;  3DU1 X;  3LMW A;  2BM6 A;  2V5I A;  4Z05 A;  1NHC A;  1QA1 A;  3PSZ A;  4YZ0 A;  1EZG A;  2NST A;  2NTB A;  3BH7 B;  1HF2 A;  1AIR A;  2UVE A;  2F3L A;  3PSS A;  4NK8 A;  4YEJ A;  4W8R A;  1H80 A;  1EE6 A;  3SUC A;  2VBE A;  1OFL A;  2VFP A;  3VMW A;  3NAW A;  4U4B A;  3SYJ A;  4U49 A;  2IOU G;  1LLW A;  4YCQ A;  1VBL A;  4YZX A;  2QYU A;  2J8I A;  2YUH A;  2QY1 A;  2XT2 A;  1OGM X;  1TSP A;  3GQ9 A;  3T9G A;  3VSU A;  4XKW A;  1QCX A;  3B90 A;  4XOT A;  4XLE A;  1CLW A;  1O88 A;  2INU A;  2VJJ A;  1QA2 A;  3FY3 A;  2PYH A;  4W8Q A;  2VFN A;  3GQ8 A;  2QXZ A;  4OJ5 A;  1O8G A;  2PYG A;  4URR A;  3TH0 A;  2XC1 A;  2W7Z A;  2XTY A;  2XTW A;  2BSP A;  3JX8 A;  1JTA A;  4NK6 A;  4W8T A;  1O8I A;  2BM7 A;  2X3H A;  4OZZ A;  4YEL A;  3RIQ A;  1O8K A;  3B8Y A;  4OPW A;  3KRG A;  4OJ6 A;  2O0W A;  1GQ8 A;  1O8E A;  3JUR A;  1K4Z A;  4OM9 A;  1IA5 A;  2QX3 A;  1OGO X;  3UW0 A;  5JLV C;  1OFE A;  2NZM A;  1OFM A;  4XOR A;  3GQ7 A;  1KTW A;  2NT6 A;  4XOP A;  1QRB A;  4OZY A;  4YC5 A;  1DBG A;  1KCC A;  2X6W A;  1O8M A;  2G0Y A;  4XKV A;  4XL9 A;  2VFM A;  3H09 A;  5AMV A;  1PE9 A;  3SY2 A;  5DNS A;  1O8F A;  2IQ7 A;  3BH6 B;  2PEC A;  2QZA A;  3EQO A;  2X85 A;  1DAB A;  2XT4 A;  1O8D A;  3GQA A;  4XLC A;  3N6Z A;  1JRG A;  1O8L A;  1RMG A;  4I84 A;  1QJV A;  2O04 A;  4W8S A;  1QQ1 A;  2VJI A;  1TYU A;  3AK5 A;  4XN3 A;  1OFD A;  2EWE A;  4OJP A;  3SZE A;  4XMY A;  1EA0 A;  4XNF A;  4YZQ A;  3VST A;  1BHE A;  1QRC A;  1XG2 A;  1WMR A;  2B0R A;  2BM5 A;  4XLH A;  1TYW A;  2XTX A;  1CZF A;  3PET A;  1IDK A;  1BN8 A;  2O17 A;  3VSV A;  2VFO A;  5C1E A;  3VMV A;  4EW9 A;  3ML3 A;  4MR0 A;  4OJO A;  4YFO A;  1LLZ A;  2BX6 A;  1RWR A;  4KH3 A;  1HG8 A;  3ZPP A;  1KCD A;  1QA3 A;  2BM4 A;  3NB2 A;  2VBK A;  3EQN A;  1DBO A;  2O6W A;  1X0C A;  1OOC A;  2VFQ A;  4AVZ A;  1PXZ A;  1TYV A;  3N90 A;  4OJL A;  1TYX A;  1IDJ A;  2J8K A;  4JRA C;  4XON A;  2UVF A;  2VBM A;  4Z03 A;  4MXN A;  3LJY A;  3GRH A;  1L1I A;  4XLF A;  4XQF A;  3P4G A;  1K8F A;  2NTQ A;  4C2L A;  1LM1 A;  2O0V A;  4XR6 A;  2NSP A;  1O8H A;  2X6Y A;  4V02 C;  4Z06 A;  4YEI A;  5C1C A;  5JMC B;  1IB4 A;  3ZSC A;  2X6X A;  4PMH A;  1K5C A;  2NT9 A;  4HWV A;  2O1D A;  2Z8G A;  3B4N A; 
#chains in the Genus database with same CATH homology
 2NTP A;  1RU4 A;  2ODL A;  1PLU A;  4XLA A;  4YZA A;  2INV A;  3WWG A;  4XN0 A;  1O8J A;  4XM3 A;  3LMW A;  4Z05 A;  1NHC A;  4YZ0 A;  2NST A;  2NTB A;  1AIR A;  2UVE A;  4NK8 A;  4YEJ A;  4W8R A;  1H80 A;  1EE6 A;  3SUC A;  2VBE A;  1OFL A;  3VMW A;  4U4B A;  4U49 A;  1VBL A;  4YZX A;  3VSU A;  3T9G A;  3ZPP A;  2QY1 A;  3GQ9 A;  1OGM X;  4XKW A;  1QCX A;  3B90 A;  4XOT A;  4XLE A;  1O88 A;  2INU A;  2VJJ A;  3FY3 A;  2PYH A;  4W8Q A;  3GQ8 A;  2QXZ A;  4OJ5 A;  1O8G A;  2PYG A;  4URR A;  2BSP A;  4W8T A;  1JTA A;  4NK6 A;  1O8I A;  2X3H A;  4OZZ A;  4YEL A;  1O8K A;  3B8Y A;  3KRG A;  4OJ6 A;  2O0W A;  1GQ8 A;  1O8E A;  3JUR A;  1IA5 A;  2QX3 A;  1OGO X;  3UW0 A;  2NZM A;  1OFM A;  4XOR A;  3GQ7 A;  1KTW A;  2NT6 A;  4XOP A;  4OZY A;  1KCC A;  1DBG A;  2X6W A;  1O8M A;  4XKV A;  4XL9 A;  5AMV A;  1PE9 A;  1O8F A;  2IQ7 A;  2PEC A;  3EQO A;  2X85 A;  1O8D A;  3GQA A;  4XLC A;  1JRG A;  1O8L A;  1RMG A;  4I84 A;  1QJV A;  2O04 A;  4W8S A;  2VJI A;  4XN3 A;  2EWE A;  4OJP A;  4XMY A;  4XNF A;  4YZQ A;  3VST A;  1BHE A;  1XG2 A;  1WMR A;  4XLH A;  1CZF A;  1IDK A;  1BN8 A;  2O17 A;  3VSV A;  5C1E A;  3VMV A;  4EW9 A;  4MR0 A;  4OJO A;  1RWR A;  1HG8 A;  2VBK A;  3EQN A;  1DBO A;  1X0C A;  1OOC A;  4AVZ A;  1PXZ A;  4OJL A;  1IDJ A;  4XON A;  2UVF A;  2VBM A;  4Z03 A;  4MXN A;  3GRH A;  4XLF A;  4XQF A;  1KCD A;  4C2L A;  2NTQ A;  4XR6 A;  2O0V A;  4Z06 A;  2NSP A;  1O8H A;  2X6Y A;  5C1C A;  1IB4 A;  3ZSC A;  2X6X A;  4PMH A;  1K5C A;  2NT9 A;  4HWV A;  2O1D A;  2Z8G A;  3B4N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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