4OZZA

Crystal structure of the periplasmic alginate epimerase algg t265n t268m double mutant
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
424
structure length
423
Chain Sequence
EMAKPVLPDLSGYTTEAALKKIARNKPGKITVARMMEETGLKEFIGDNKMAEWVVRQKGIPQAIMISDGYVNLQDLVKKVPKQFLSEVSPGVYVARLPILVKETGIFEIDSKTKELRLSQEKGSFIVSEGKMLITNTSVNAWSETRNGLAAYRTPDEFRPFVLTWGGSQTWIAKTKMASMGYNQSKSYGVSISQYNPNMAKVLKRGEPTGWIIDSEFADMWYGFYCYETRDFVVKGNTYRDNIVYGIDPHDRSHGLIIAENDVYGTKKKHGIIISREVDNSFIFRNKSHNNKLSGVVLDRNSVGNIVAYNEIYQNHTDGITLYESGNNLLWGNRVIANRRHGIRVRNSVNIKLYENVAMANGLMGVYGHIKDLNDTDRDIELDPFDAQVSLIMVGGELSSNGSGPLSIDSPLSVELYRVSMLM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Pseudomonas syringae pv. tomato
publication title Crystal Structure of the periplasmic alginate epimerase AlgG T265N T268M double mutant
rcsb
molecule keywords Poly(beta-D-mannuronate) C5 epimerase
total genus 169
structure length 423
sequence length 424
ec nomenclature ec 5.1.3.37: Mannuronan 5-epimerase.
pdb deposition date 2014-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4ozzA00
4XLAA 4XMYA 1OGOX 3VMWA 2NTBA 4YZQA 1IB4A 4XNFA 1O8GA 4OJ6A 3B4NA 3EQOA 4XORA 3ZSCA 1CZFA 4AVZA 3VSUA 4HWVA 2UVFA 4W8RA 4XR6A 5AMVA 2PYGA 2PYHA 4XLFA 1EE6A 4XKWA 1O88A 3GQAA 1O8DA 1H80A 2BSPA 4OJPA 4XL9A 4XLCA 2O17A 2ODLA 2VJIA 3ZPPA 4U4BA 4YELA 3JURA 2QX3A 4Z03A 2NTQA 2UVEA 3LMWA 4PMHA 4URRA 4XM3A 2VBEA 4OZZA 1JRGA 1OFMA 3UW0A 3GQ8A 1OGMX 1HG8A 4XKVA 1O8EA 3EQNA 2O0VA 4C2LA 3FY3A 1OFLA 4YZXA 1XG2A 3VSTA 2O0WA 1IA5A 4Z06A 1O8IA 4NK6A 4EW9A 1DBGA 1RMGA 3B8YA 4YZ0A 2EWEA 4OJLA 1NHCA 3KRGA 4MXNA 2NSTA 3SUCA 2VJJA 1OOCA 2VBMA 1WMRA 1RU4A 2QY1A 1RWRA 2NZMA 2O04A 4XN0A 2O1DA 4MR0A 1O8KA 2X6XA 1JTAA 2NT6A 1IDJA 1O8MA 2INUA 2IQ7A 4XLHA 1QJVA 5C1EA 2NSPA 2VBKA 2X3HA 4I84A 2X85A 4XN3A 4YZAA 1K5CA 1DBOA 1O8HA 4W8TA 4XLEA 1KCCA 1BHEA 1X0CA 2Z8GA 1BN8A 1QCXA 1KTWA 1GQ8A 1KCDA 1O8FA 4U49A 4XOTA 5C1CA 1AIRA 4Z05A 1VBLA 4OJ5A 1PE9A 3B90A 3VSVA 4OZYA 2NT9A 2QXZA 2X6YA 3GRHA 4YEJA 4XONA 3WWGA 2X6WA 4XOPA 3T9GA 2NTPA 1IDKA 2INVA 3GQ7A 1PLUA 2PECA 4W8QA 3VMVA 1O8JA 4NK8A 4W8SA 3GQ9A 1O8LA 4OJOA 4XQFA 1PXZA
chains in the Genus database with same CATH superfamily
3BH7B 4XLAA 4XMYA 1OGOX 2XTYA 3VMWA 2NTBA 4YZQA 2BM6A 1IB4A 4XNFA 4YC5A 1O8GA 4OJ6A 3B4NA 1TYXA 1TYVA 3EQOA 4XORA 1LLWA 3ZSCA 1CZFA 4AVZA 3VSUA 2XT4A 4HWVA 2UVFA 2BM4A 3P4GA 4W8RA 4XR6A 5AMVA 2PYGA 2PYHA 3PSZA 4XLFA 1EE6A 3SQVA 4YEIA 4XKWA 1QA2A 3NB2A 1O88A 3GQAA 2BM7A 1O8DA 1H80A 2BSPA 4OJPA 3LJYA 4XL9A 4XLCA 2VFNA 2BM5A 2O17A 1TYWA 2ODLA 2VJIA 3ZPPA 2F3LA 4U4BA 4YELA 3JURA 2QX3A 4Z03A 2NTQA 2UVEA 3LMWA 1KQ5A 4PMHA 3PSSA 4URRA 4XM3A 2VBEA 4OZZA 1QRCA 1JRGA 2V5IA 3N90A 3NAWA 1L1IA 1OFMA 3UW0A 4YFOA 3GQ8A 2QYUA 1OGMX 2VFOA 3JX8A 1LM1A 1HG8A 4JRAC 4XKVA 3AK5A 1O8EA 3EQNA 2O0VA 4C2LA 3FY3A 1OFLA 4YZXA 1XG2A 3VSTA 2O0WA 1IA5A 2XT2A 4Z06A 1O8IA 4YCQA 5DNSA 3SZEA 3SY2A 3H09A 3DU1X 4NK6A 4EW9A 1DBGA 1RMGA 3B8YA 1CLWA 2VFMA 4YZ0A 5JLVC 1K4ZA 2YUHA 2EWEA 4OJLA 1NHCA 3KRGA 4MXNA 2NSTA 3SUCA 2VJJA 3RIQA 1TYUA 1OOCA 2VBMA 1WMRA 1EA0A 2IOUG 3TH0A 1RU4A 3N6ZA 4YDTA 2QY1A 1RWRA 1OFDA 1LLZA 2O04A 2NZMA 2O1DA 1TSPA 2QZAA 4MR0A 4V02C 4XN0A 1O8KA 2X6XA 1JTAA 2NT6A 1IDJA 1HF2A 1O8MA 2INUA 2IQ7A 4XLHA 4KH3A 1QJVA 5C1EA 2NSPA 2VBKA 3SYJA 2XTXA 2XC1A 2X3HA 4I84A 2X85A 4XN3A 4YZAA 1K5CA 1DBOA 1O8HA 1QA1A 2W7ZA 4W8TA 4XLEA 1KCCA 1BHEA 1X0CA 2G0YA 2Z8GA 1BN8A 1QCXA 1KTWA 2VFPA 4OM9A 1QA3A 1GQ8A 1KCDA 1O8FA 4U49A 4XOTA 5C1CA 3BH6B 1AIRA 1OFEA 4Z05A 3LYCA 2J8KA 1VBLA 1QQ1A 3PETA 4OJ5A 1PE9A 3B90A 4OPWA 3VSVA 1QRBA 2J8IA 4OZYA 1EZGA 2NT9A 2QXZA 2O6WA 2X6YA 3GRHA 2B0RA 2VFQA 5JMCB 1WXRA 4YEJA 4XONA 2XTWA 3WWGA 2X6WA 3ML3A 4XOPA 3T9GA 2NTPA 1IDKA 2INVA 3GQ7A 1PLUA 1K8FA 2PECA 4W8QA 3VMVA 2BX6A 1DABA 1O8JA 4NK8A 4W8SA 3GQ9A 1O8LA 4OJOA 4XQFA 1PXZA
chains in the Genus database with same CATH topology
4XLAA 4XMYA 1OGOX 3VMWA 2NTBA 4YZQA 1IB4A 4XNFA 1O8GA 4OJ6A 3B4NA 3EQOA 4XORA 3ZSCA 1CZFA 4AVZA 3VSUA 4HWVA 2UVFA 4W8RA 4XR6A 5AMVA 2PYGA 2PYHA 4XLFA 1EE6A 4XKWA 1O88A 3GQAA 1O8DA 1H80A 2BSPA 4OJPA 4XL9A 4XLCA 2O17A 2ODLA 2VJIA 3ZPPA 4U4BA 4YELA 3JURA 2QX3A 4Z03A 2NTQA 2UVEA 3LMWA 4PMHA 4URRA 4XM3A 2VBEA 4OZZA 1JRGA 1OFMA 3UW0A 3GQ8A 1OGMX 1HG8A 4XKVA 1O8EA 3EQNA 2O0VA 4C2LA 3FY3A 1OFLA 4YZXA 1XG2A 3VSTA 2O0WA 1IA5A 4Z06A 1O8IA 4NK6A 4EW9A 1DBGA 1RMGA 3B8YA 4YZ0A 2EWEA 4OJLA 1NHCA 3KRGA 4MXNA 2NSTA 3SUCA 2VJJA 1OOCA 2VBMA 1WMRA 1RU4A 2QY1A 1RWRA 2NZMA 2O04A 4XN0A 2O1DA 4MR0A 1O8KA 2X6XA 1JTAA 2NT6A 1IDJA 1O8MA 2INUA 2IQ7A 4XLHA 1QJVA 5C1EA 2NSPA 2VBKA 2X3HA 4I84A 2X85A 4XN3A 4YZAA 1K5CA 1DBOA 1O8HA 4W8TA 4XLEA 1KCCA 1BHEA 1X0CA 2Z8GA 1BN8A 1QCXA 1KTWA 1GQ8A 1KCDA 1O8FA 4U49A 4XOTA 5C1CA 1AIRA 4Z05A 1VBLA 4OJ5A 1PE9A 3B90A 3VSVA 4OZYA 2NT9A 2QXZA 2X6YA 3GRHA 4YEJA 4XONA 3WWGA 2X6WA 4XOPA 3T9GA 2NTPA 1IDKA 2INVA 3GQ7A 1PLUA 2PECA 4W8QA 3VMVA 1O8JA 4NK8A 4W8SA 3GQ9A 1O8LA 4OJOA 4XQFA 1PXZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XLA A;  4XMY A;  1OGO X;  3VMW A;  2NTB A;  4YZQ A;  1IB4 A;  4XNF A;  1O8G A;  4OJ6 A;  3B4N A;  3EQO A;  4XOR A;  3ZSC A;  1CZF A;  4AVZ A;  3VSU A;  4HWV A;  2UVF A;  4W8R A;  4XR6 A;  5AMV A;  2PYG A;  2PYH A;  4XLF A;  1EE6 A;  4XKW A;  1O88 A;  3GQA A;  1O8D A;  1H80 A;  2BSP A;  4OJP A;  4XL9 A;  4XLC A;  2O17 A;  2ODL A;  2VJI A;  3ZPP A;  4U4B A;  4YEL A;  3JUR A;  2QX3 A;  4Z03 A;  2NTQ A;  2UVE A;  3LMW A;  4PMH A;  4URR A;  4XM3 A;  2VBE A;  4OZZ A;  1JRG A;  1OFM A;  3UW0 A;  3GQ8 A;  1OGM X;  1HG8 A;  4XKV A;  1O8E A;  3EQN A;  2O0V A;  4C2L A;  3FY3 A;  1OFL A;  4YZX A;  1XG2 A;  3VST A;  2O0W A;  1IA5 A;  4Z06 A;  1O8I A;  4NK6 A;  4EW9 A;  1DBG A;  1RMG A;  3B8Y A;  4YZ0 A;  2EWE A;  4OJL A;  1NHC A;  3KRG A;  4MXN A;  2NST A;  3SUC A;  2VJJ A;  1OOC A;  2VBM A;  1WMR A;  1RU4 A;  2QY1 A;  1RWR A;  2NZM A;  2O04 A;  4XN0 A;  2O1D A;  4MR0 A;  1O8K A;  2X6X A;  1JTA A;  2NT6 A;  1IDJ A;  1O8M A;  2INU A;  2IQ7 A;  4XLH A;  1QJV A;  5C1E A;  2NSP A;  2VBK A;  2X3H A;  4I84 A;  2X85 A;  4XN3 A;  4YZA A;  1K5C A;  1DBO A;  1O8H A;  4W8T A;  4XLE A;  1KCC A;  1BHE A;  1X0C A;  2Z8G A;  1BN8 A;  1QCX A;  1KTW A;  1GQ8 A;  1KCD A;  1O8F A;  4U49 A;  4XOT A;  5C1C A;  1AIR A;  4Z05 A;  1VBL A;  4OJ5 A;  1PE9 A;  3B90 A;  3VSV A;  4OZY A;  2NT9 A;  2QXZ A;  2X6Y A;  3GRH A;  4YEJ A;  4XON A;  3WWG A;  2X6W A;  4XOP A;  3T9G A;  2NTP A;  1IDK A;  2INV A;  3GQ7 A;  1PLU A;  2PEC A;  4W8Q A;  3VMV A;  1O8J A;  4NK8 A;  4W8S A;  3GQ9 A;  1O8L A;  4OJO A;  4XQF A;  1PXZ A; 
#chains in the Genus database with same CATH topology
 3BH7 B;  4XLA A;  4XMY A;  1OGO X;  2XTY A;  3VMW A;  2NTB A;  4YZQ A;  2BM6 A;  1IB4 A;  4XNF A;  4YC5 A;  1O8G A;  4OJ6 A;  3B4N A;  1TYX A;  1TYV A;  3EQO A;  4XOR A;  1LLW A;  3ZSC A;  1CZF A;  4AVZ A;  3VSU A;  2XT4 A;  4HWV A;  2UVF A;  2BM4 A;  3P4G A;  4W8R A;  4XR6 A;  5AMV A;  2PYG A;  2PYH A;  3PSZ A;  4XLF A;  1EE6 A;  3SQV A;  4YEI A;  4XKW A;  1QA2 A;  3NB2 A;  1O88 A;  3GQA A;  2BM7 A;  1O8D A;  1H80 A;  2BSP A;  4OJP A;  3LJY A;  4XL9 A;  4XLC A;  2VFN A;  2BM5 A;  2O17 A;  1TYW A;  2ODL A;  2VJI A;  3ZPP A;  2F3L A;  4U4B A;  4YEL A;  3JUR A;  2QX3 A;  4Z03 A;  2NTQ A;  2UVE A;  3LMW A;  1KQ5 A;  4PMH A;  3PSS A;  4URR A;  4XM3 A;  2VBE A;  4OZZ A;  1QRC A;  1JRG A;  2V5I A;  3N90 A;  3NAW A;  1L1I A;  1OFM A;  3UW0 A;  4YFO A;  3GQ8 A;  2QYU A;  1OGM X;  2VFO A;  3JX8 A;  1LM1 A;  1HG8 A;  4JRA C;  4XKV A;  3AK5 A;  1O8E A;  3EQN A;  2O0V A;  4C2L A;  3FY3 A;  1OFL A;  4YZX A;  1XG2 A;  3VST A;  2O0W A;  1IA5 A;  2XT2 A;  4Z06 A;  1O8I A;  4YCQ A;  5DNS A;  3SZE A;  3SY2 A;  3H09 A;  3DU1 X;  4NK6 A;  4EW9 A;  1DBG A;  1RMG A;  3B8Y A;  1CLW A;  2VFM A;  4YZ0 A;  5JLV C;  1K4Z A;  2YUH A;  2EWE A;  4OJL A;  1NHC A;  3KRG A;  4MXN A;  2NST A;  3SUC A;  2VJJ A;  3RIQ A;  1TYU A;  1OOC A;  2VBM A;  1WMR A;  1EA0 A;  2IOU G;  3TH0 A;  1RU4 A;  3N6Z A;  4YDT A;  2QY1 A;  1RWR A;  1OFD A;  1LLZ A;  2O04 A;  2NZM A;  2O1D A;  1TSP A;  2QZA A;  4MR0 A;  4V02 C;  4XN0 A;  1O8K A;  2X6X A;  1JTA A;  2NT6 A;  1IDJ A;  1HF2 A;  1O8M A;  2INU A;  2IQ7 A;  4XLH A;  4KH3 A;  1QJV A;  5C1E A;  2NSP A;  2VBK A;  3SYJ A;  2XTX A;  2XC1 A;  2X3H A;  4I84 A;  2X85 A;  4XN3 A;  4YZA A;  1K5C A;  1DBO A;  1O8H A;  1QA1 A;  2W7Z A;  4W8T A;  4XLE A;  1KCC A;  1BHE A;  1X0C A;  2G0Y A;  2Z8G A;  1BN8 A;  1QCX A;  1KTW A;  2VFP A;  4OM9 A;  1QA3 A;  1GQ8 A;  1KCD A;  1O8F A;  4U49 A;  4XOT A;  5C1C A;  3BH6 B;  1AIR A;  1OFE A;  4Z05 A;  3LYC A;  2J8K A;  1VBL A;  1QQ1 A;  3PET A;  4OJ5 A;  1PE9 A;  3B90 A;  4OPW A;  3VSV A;  1QRB A;  2J8I A;  4OZY A;  1EZG A;  2NT9 A;  2QXZ A;  2O6W A;  2X6Y A;  3GRH A;  2B0R A;  2VFQ A;  5JMC B;  1WXR A;  4YEJ A;  4XON A;  2XTW A;  3WWG A;  2X6W A;  3ML3 A;  4XOP A;  3T9G A;  2NTP A;  1IDK A;  2INV A;  3GQ7 A;  1PLU A;  1K8F A;  2PEC A;  4W8Q A;  3VMV A;  2BX6 A;  1DAB A;  1O8J A;  4NK8 A;  4W8S A;  3GQ9 A;  1O8L A;  4OJO A;  4XQF A;  1PXZ A; 
#chains in the Genus database with same CATH homology
 4XLA A;  4XMY A;  1OGO X;  3VMW A;  2NTB A;  4YZQ A;  1IB4 A;  4XNF A;  1O8G A;  4OJ6 A;  3B4N A;  3EQO A;  4XOR A;  3ZSC A;  1CZF A;  4AVZ A;  3VSU A;  4HWV A;  2UVF A;  4W8R A;  4XR6 A;  5AMV A;  2PYG A;  2PYH A;  4XLF A;  1EE6 A;  4XKW A;  1O88 A;  3GQA A;  1O8D A;  1H80 A;  2BSP A;  4OJP A;  4XL9 A;  4XLC A;  2O17 A;  2ODL A;  2VJI A;  3ZPP A;  4U4B A;  4YEL A;  3JUR A;  2QX3 A;  4Z03 A;  2NTQ A;  2UVE A;  3LMW A;  4PMH A;  4URR A;  4XM3 A;  2VBE A;  4OZZ A;  1JRG A;  1OFM A;  3UW0 A;  3GQ8 A;  1OGM X;  1HG8 A;  4XKV A;  1O8E A;  3EQN A;  2O0V A;  4C2L A;  3FY3 A;  1OFL A;  4YZX A;  1XG2 A;  3VST A;  2O0W A;  1IA5 A;  4Z06 A;  1O8I A;  4NK6 A;  4EW9 A;  1DBG A;  1RMG A;  3B8Y A;  4YZ0 A;  2EWE A;  4OJL A;  1NHC A;  3KRG A;  4MXN A;  2NST A;  3SUC A;  2VJJ A;  1OOC A;  2VBM A;  1WMR A;  1RU4 A;  2QY1 A;  1RWR A;  2NZM A;  2O04 A;  4XN0 A;  2O1D A;  4MR0 A;  1O8K A;  2X6X A;  1JTA A;  2NT6 A;  1IDJ A;  1O8M A;  2INU A;  2IQ7 A;  4XLH A;  1QJV A;  5C1E A;  2NSP A;  2VBK A;  2X3H A;  4I84 A;  2X85 A;  4XN3 A;  4YZA A;  1K5C A;  1DBO A;  1O8H A;  4W8T A;  4XLE A;  1KCC A;  1BHE A;  1X0C A;  2Z8G A;  1BN8 A;  1QCX A;  1KTW A;  1GQ8 A;  1KCD A;  1O8F A;  4U49 A;  4XOT A;  5C1C A;  1AIR A;  4Z05 A;  1VBL A;  4OJ5 A;  1PE9 A;  3B90 A;  3VSV A;  4OZY A;  2NT9 A;  2QXZ A;  2X6Y A;  3GRH A;  4YEJ A;  4XON A;  3WWG A;  2X6W A;  4XOP A;  3T9G A;  2NTP A;  1IDK A;  2INV A;  3GQ7 A;  1PLU A;  2PEC A;  4W8Q A;  3VMV A;  1O8J A;  4NK8 A;  4W8S A;  3GQ9 A;  1O8L A;  4OJO A;  4XQF A;  1PXZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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