1OGMX

Dex49a from penicillium minioluteum
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
572
structure length
572
Chain Sequence
b'TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPFLPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords DEXTRANASE
publication title Dextranase from Penicillium Minioluteum. Reaction Course, Crystal Structure, and Product Complex
pubmed doi rcsb
source organism Penicillium minioluteum
molecule tags Hydrolase
total genus 184
structure length 572
sequence length 572
ec nomenclature ec 3.2.1.11: Dextranase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
X PF17433 Glyco_hydro_49N Glycosyl hydrolase family 49 N-terminal Ig-like domain
X PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
X PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1ogmX01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ogmX02
3JURA 1WMRA 2NSPA 4PMHA 2UVEA 2EWEA 3WWGA 4XLFA 1PE9A 2VBEA 2VBMA 4XKWA 2QXZA 2PYGA 2NTPA 4W8SA 2NTQA 1QJVA 4XN0A 4YZAA 3ZPPA 1X0CA 1OOCA 4XLHA 3VSTA 4OJLA 4C2LA 1XG2A 4I84A 4OJOA 4YZQA 1KCCA 2VJJA 1O8JA 1O8HA 1HG8A 4MR0A 3GQAA 3T9GA 4OJPA 1IA5A 3GRHA 3EQNA 4Z03A 2IQ7A 1O8KA 2NTBA 1OFMA 1K5CA 1OGMX 3EQOA 1O88A 2NT6A 3VSVA 4EW9A 1O8FA 3VMVA 1RU4A 1CZFA 4W8QA 4YZ0A 4OZZA 1JRGA 4XR6A 4HWVA 2QY1A 3UW0A 1IDJA 2X6WA 4XONA 3ZSCA 1IB4A 2BSPA 3LMWA 1PXZA 4XLEA 1RMGA 2NT9A 3B8YA 1PLUA 2O04A 2NZMA 4OJ6A 4MXNA 4XOPA 3B4NA 4XM3A 2Z8GA 4U4BA 4AVZA 2VJIA 3VMWA 4YEJA 4XNFA 3GQ7A 2X3HA 1BHEA 2PECA 1O8GA 1QCXA 4U49A 1JTAA 4XL9A 4YELA 5C1CA 5AMVA 4XN3A 1GQ8A 2INVA 4XORA 1IDKA 2X6XA 2O17A 4W8RA 2ODLA 3GQ9A 4OJ5A 5C1EA 4OZYA 2QX3A 4NK8A 4XKVA 2PYHA 4W8TA 3SUCA 2O0VA 4YZXA 1DBOA 2INUA 1OFLA 4NK6A 4XLAA 3KRGA 4Z05A 4XLCA 3B90A 2X85A 3FY3A 4Z06A 2UVFA 1EE6A 2O1DA 1O8IA 2NSTA 3VSUA 1BN8A 1H80A 2X6YA 1DBGA 4XMYA 4XOTA 1AIRA 1O8EA 1O8DA 2VBKA 4XQFA 1KTWA 3GQ8A 1NHCA 1KCDA 2O0WA 1O8MA 4URRA 1OGOX 1RWRA 1O8LA 1VBLA
chains in the Genus database with same CATH superfamily
3JURA 1WMRA 2NSPA 4PMHA 2UVEA 4YDTA 1KQ5A 2EWEA 3WWGA 2XT4A 2XTXA 4XLFA 1PE9A 2VBEA 1EA0A 4YFOA 1DABA 1K8FA 1QRCA 2VBMA 2BX6A 4XKWA 2QXZA 2PYGA 2NTPA 4W8SA 3N6ZA 3P4GA 2NTQA 1QJVA 4XN0A 4YZAA 2QZAA 1X0CA 1OOCA 3PSSA 4XLHA 4OJLA 3VSTA 3ZPPA 1XG2A 4I84A 2IOUG 4OJOA 4JRAC 4YZQA 1KCCA 2VJJA 1O8JA 1O8HA 1HG8A 4MR0A 2XTWA 3GQAA 3T9GA 3TH0A 4OJPA 1EZGA 1LM1A 1TYVA 1IA5A 2O6WA 2VFMA 2BM6A 3GRHA 3EQNA 3SQVA 4Z03A 2IQ7A 1O8KA 2NTBA 3SZEA 5JMCB 3SY2A 1LLWA 1OFMA 1K5CA 1OGMX 3EQOA 1O88A 2G0YA 2NT6A 2VFOA 3VSVA 4EW9A 1O8FA 3VMVA 1RU4A 1CZFA 4W8QA 4YZ0A 4OZZA 1OFEA 3PETA 1JRGA 1TSPA 4XR6A 4HWVA 2QY1A 2XC1A 3UW0A 1IDJA 3PSZA 2BM4A 2VFPA 3AK5A 2X6WA 4XONA 3ZSCA 1OFDA 4C2LA 1IB4A 2BSPA 3LMWA 1PXZA 2W7ZA 1HF2A 4XLEA 3SYJA 5JLVC 1QA1A 1RMGA 1QQ1A 3BH7B 2B0RA 5DNSA 2NT9A 3B8YA 1PLUA 2O04A 1QA3A 3RIQA 2NZMA 4OJ6A 4MXNA 4XOPA 1TYXA 3B4NA 4XM3A 2Z8GA 2V5IA 4U4BA 4AVZA 4V02C 2VJIA 3VMWA 4YCQA 4YEJA 4XNFA 1K4ZA 2X3HA 3GQ7A 1BHEA 4YEIA 2PECA 1O8GA 1QCXA 4U49A 2F3LA 1JTAA 4XL9A 4YELA 5C1CA 5AMVA 4XN3A 1GQ8A 2INVA 2VFNA 4XORA 1IDKA 2YUHA 3NAWA 4OM9A 2X6XA 2J8IA 2O17A 2BM7A 1TYUA 2ODLA 3GQ9A 4W8RA 1QRBA 2BM5A 4OPWA 4OJ5A 5C1EA 4OZYA 2QX3A 4NK8A 4XKVA 2PYHA 1QA2A 4W8TA 3N90A 3SUCA 2O0VA 4YZXA 4KH3A 1DBOA 2INUA 1OFLA 3JX8A 2J8KA 4NK6A 2VFQA 4XLAA 3KRGA 4Z05A 4XLCA 3B90A 2X85A 1LLZA 3LJYA 3FY3A 3BH6B 2XT2A 4Z06A 1L1IA 2UVFA 1EE6A 2O1DA 1O8IA 2NSTA 3VSUA 1CLWA 1WXRA 1BN8A 2XTYA 3NB2A 1H80A 2X6YA 1DBGA 3DU1X 4XMYA 4XOTA 1AIRA 3ML3A 1O8EA 3H09A 1O8DA 2VBKA 4XQFA 1KTWA 1TYWA 3GQ8A 1NHCA 1KCDA 2O0WA 1O8MA 2QYUA 3LYCA 4URRA 4YC5A 1OGOX 1RWRA 1O8LA 1VBLA
chains in the Genus database with same CATH topology
3JURA 1WMRA 2NSPA 4PMHA 2UVEA 2EWEA 3WWGA 4XLFA 1PE9A 2VBEA 2VBMA 4XKWA 2QXZA 2PYGA 2NTPA 4W8SA 2NTQA 1QJVA 4XN0A 4YZAA 3ZPPA 1X0CA 1OOCA 4XLHA 3VSTA 4OJLA 4C2LA 1XG2A 4I84A 4OJOA 4YZQA 1KCCA 2VJJA 1O8JA 1O8HA 1HG8A 4MR0A 3GQAA 3T9GA 4OJPA 1IA5A 3GRHA 3EQNA 4Z03A 2IQ7A 1O8KA 2NTBA 1OFMA 1K5CA 1OGMX 3EQOA 1O88A 2NT6A 3VSVA 4EW9A 1O8FA 3VMVA 1RU4A 1CZFA 4W8QA 4YZ0A 4OZZA 1JRGA 4XR6A 4HWVA 2QY1A 3UW0A 1IDJA 2X6WA 4XONA 3ZSCA 1IB4A 2BSPA 3LMWA 1PXZA 4XLEA 1RMGA 2NT9A 3B8YA 1PLUA 2O04A 2NZMA 4OJ6A 4MXNA 4XOPA 3B4NA 4XM3A 2Z8GA 4U4BA 4AVZA 2VJIA 3VMWA 4YEJA 4XNFA 3GQ7A 2X3HA 1BHEA 2PECA 1O8GA 1QCXA 4U49A 1JTAA 4XL9A 4YELA 5C1CA 5AMVA 4XN3A 1GQ8A 2INVA 4XORA 1IDKA 2X6XA 2O17A 4W8RA 2ODLA 3GQ9A 4OJ5A 5C1EA 4OZYA 2QX3A 4NK8A 4XKVA 2PYHA 4W8TA 3SUCA 2O0VA 4YZXA 1DBOA 2INUA 1OFLA 4NK6A 4XLAA 3KRGA 4Z05A 4XLCA 3B90A 2X85A 3FY3A 4Z06A 2UVFA 1EE6A 2O1DA 1O8IA 2NSTA 3VSUA 1BN8A 1H80A 2X6YA 1DBGA 4XMYA 4XOTA 1AIRA 1O8EA 1O8DA 2VBKA 4XQFA 1KTWA 3GQ8A 1NHCA 1KCDA 2O0WA 1O8MA 4URRA 1OGOX 1RWRA 1O8LA 1VBLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JUR A;  1WMR A;  2NSP A;  4PMH A;  2UVE A;  2EWE A;  3WWG A;  4XLF A;  1PE9 A;  2VBE A;  2VBM A;  4XKW A;  2QXZ A;  2PYG A;  2NTP A;  4W8S A;  2NTQ A;  1QJV A;  4XN0 A;  4YZA A;  3ZPP A;  1X0C A;  1OOC A;  4XLH A;  3VST A;  4OJL A;  4C2L A;  1XG2 A;  4I84 A;  4OJO A;  4YZQ A;  1KCC A;  2VJJ A;  1O8J A;  1O8H A;  1HG8 A;  4MR0 A;  3GQA A;  3T9G A;  4OJP A;  1IA5 A;  3GRH A;  3EQN A;  4Z03 A;  2IQ7 A;  1O8K A;  2NTB A;  1OFM A;  1K5C A;  1OGM X;  3EQO A;  1O88 A;  2NT6 A;  3VSV A;  4EW9 A;  1O8F A;  3VMV A;  1RU4 A;  1CZF A;  4W8Q A;  4YZ0 A;  4OZZ A;  1JRG A;  4XR6 A;  4HWV A;  2QY1 A;  3UW0 A;  1IDJ A;  2X6W A;  4XON A;  3ZSC A;  1IB4 A;  2BSP A;  3LMW A;  1PXZ A;  4XLE A;  1RMG A;  2NT9 A;  3B8Y A;  1PLU A;  2O04 A;  2NZM A;  4OJ6 A;  4MXN A;  4XOP A;  3B4N A;  4XM3 A;  2Z8G A;  4U4B A;  4AVZ A;  2VJI A;  3VMW A;  4YEJ A;  4XNF A;  3GQ7 A;  2X3H A;  1BHE A;  2PEC A;  1O8G A;  1QCX A;  4U49 A;  1JTA A;  4XL9 A;  4YEL A;  5C1C A;  5AMV A;  4XN3 A;  1GQ8 A;  2INV A;  4XOR A;  1IDK A;  2X6X A;  2O17 A;  4W8R A;  2ODL A;  3GQ9 A;  4OJ5 A;  5C1E A;  4OZY A;  2QX3 A;  4NK8 A;  4XKV A;  2PYH A;  4W8T A;  3SUC A;  2O0V A;  4YZX A;  1DBO A;  2INU A;  1OFL A;  4NK6 A;  4XLA A;  3KRG A;  4Z05 A;  4XLC A;  3B90 A;  2X85 A;  3FY3 A;  4Z06 A;  2UVF A;  1EE6 A;  2O1D A;  1O8I A;  2NST A;  3VSU A;  1BN8 A;  1H80 A;  2X6Y A;  1DBG A;  4XMY A;  4XOT A;  1AIR A;  1O8E A;  1O8D A;  2VBK A;  4XQF A;  1KTW A;  3GQ8 A;  1NHC A;  1KCD A;  2O0W A;  1O8M A;  4URR A;  1OGO X;  1RWR A;  1O8L A;  1VBL A; 
#chains in the Genus database with same CATH topology
 3JUR A;  1WMR A;  2NSP A;  4PMH A;  2UVE A;  4YDT A;  1KQ5 A;  2EWE A;  3WWG A;  2XT4 A;  2XTX A;  4XLF A;  1PE9 A;  2VBE A;  1EA0 A;  4YFO A;  1DAB A;  1K8F A;  1QRC A;  2VBM A;  2BX6 A;  4XKW A;  2QXZ A;  2PYG A;  2NTP A;  4W8S A;  3N6Z A;  3P4G A;  2NTQ A;  1QJV A;  4XN0 A;  4YZA A;  2QZA A;  1X0C A;  1OOC A;  3PSS A;  4XLH A;  4OJL A;  3VST A;  3ZPP A;  1XG2 A;  4I84 A;  2IOU G;  4OJO A;  4JRA C;  4YZQ A;  1KCC A;  2VJJ A;  1O8J A;  1O8H A;  1HG8 A;  4MR0 A;  2XTW A;  3GQA A;  3T9G A;  3TH0 A;  4OJP A;  1EZG A;  1LM1 A;  1TYV A;  1IA5 A;  2O6W A;  2VFM A;  2BM6 A;  3GRH A;  3EQN A;  3SQV A;  4Z03 A;  2IQ7 A;  1O8K A;  2NTB A;  3SZE A;  5JMC B;  3SY2 A;  1LLW A;  1OFM A;  1K5C A;  1OGM X;  3EQO A;  1O88 A;  2G0Y A;  2NT6 A;  2VFO A;  3VSV A;  4EW9 A;  1O8F A;  3VMV A;  1RU4 A;  1CZF A;  4W8Q A;  4YZ0 A;  4OZZ A;  1OFE A;  3PET A;  1JRG A;  1TSP A;  4XR6 A;  4HWV A;  2QY1 A;  2XC1 A;  3UW0 A;  1IDJ A;  3PSZ A;  2BM4 A;  2VFP A;  3AK5 A;  2X6W A;  4XON A;  3ZSC A;  1OFD A;  4C2L A;  1IB4 A;  2BSP A;  3LMW A;  1PXZ A;  2W7Z A;  1HF2 A;  4XLE A;  3SYJ A;  5JLV C;  1QA1 A;  1RMG A;  1QQ1 A;  3BH7 B;  2B0R A;  5DNS A;  2NT9 A;  3B8Y A;  1PLU A;  2O04 A;  1QA3 A;  3RIQ A;  2NZM A;  4OJ6 A;  4MXN A;  4XOP A;  1TYX A;  3B4N A;  4XM3 A;  2Z8G A;  2V5I A;  4U4B A;  4AVZ A;  4V02 C;  2VJI A;  3VMW A;  4YCQ A;  4YEJ A;  4XNF A;  1K4Z A;  2X3H A;  3GQ7 A;  1BHE A;  4YEI A;  2PEC A;  1O8G A;  1QCX A;  4U49 A;  2F3L A;  1JTA A;  4XL9 A;  4YEL A;  5C1C A;  5AMV A;  4XN3 A;  1GQ8 A;  2INV A;  2VFN A;  4XOR A;  1IDK A;  2YUH A;  3NAW A;  4OM9 A;  2X6X A;  2J8I A;  2O17 A;  2BM7 A;  1TYU A;  2ODL A;  3GQ9 A;  4W8R A;  1QRB A;  2BM5 A;  4OPW A;  4OJ5 A;  5C1E A;  4OZY A;  2QX3 A;  4NK8 A;  4XKV A;  2PYH A;  1QA2 A;  4W8T A;  3N90 A;  3SUC A;  2O0V A;  4YZX A;  4KH3 A;  1DBO A;  2INU A;  1OFL A;  3JX8 A;  2J8K A;  4NK6 A;  2VFQ A;  4XLA A;  3KRG A;  4Z05 A;  4XLC A;  3B90 A;  2X85 A;  1LLZ A;  3LJY A;  3FY3 A;  3BH6 B;  2XT2 A;  4Z06 A;  1L1I A;  2UVF A;  1EE6 A;  2O1D A;  1O8I A;  2NST A;  3VSU A;  1CLW A;  1WXR A;  1BN8 A;  2XTY A;  3NB2 A;  1H80 A;  2X6Y A;  1DBG A;  3DU1 X;  4XMY A;  4XOT A;  1AIR A;  3ML3 A;  1O8E A;  3H09 A;  1O8D A;  2VBK A;  4XQF A;  1KTW A;  1TYW A;  3GQ8 A;  1NHC A;  1KCD A;  2O0W A;  1O8M A;  2QYU A;  3LYC A;  4URR A;  4YC5 A;  1OGO X;  1RWR A;  1O8L A;  1VBL A; 
#chains in the Genus database with same CATH homology
 3JUR A;  1WMR A;  2NSP A;  4PMH A;  2UVE A;  2EWE A;  3WWG A;  4XLF A;  1PE9 A;  2VBE A;  2VBM A;  4XKW A;  2QXZ A;  2PYG A;  2NTP A;  4W8S A;  2NTQ A;  1QJV A;  4XN0 A;  4YZA A;  3ZPP A;  1X0C A;  1OOC A;  4XLH A;  3VST A;  4OJL A;  4C2L A;  1XG2 A;  4I84 A;  4OJO A;  4YZQ A;  1KCC A;  2VJJ A;  1O8J A;  1O8H A;  1HG8 A;  4MR0 A;  3GQA A;  3T9G A;  4OJP A;  1IA5 A;  3GRH A;  3EQN A;  4Z03 A;  2IQ7 A;  1O8K A;  2NTB A;  1OFM A;  1K5C A;  1OGM X;  3EQO A;  1O88 A;  2NT6 A;  3VSV A;  4EW9 A;  1O8F A;  3VMV A;  1RU4 A;  1CZF A;  4W8Q A;  4YZ0 A;  4OZZ A;  1JRG A;  4XR6 A;  4HWV A;  2QY1 A;  3UW0 A;  1IDJ A;  2X6W A;  4XON A;  3ZSC A;  1IB4 A;  2BSP A;  3LMW A;  1PXZ A;  4XLE A;  1RMG A;  2NT9 A;  3B8Y A;  1PLU A;  2O04 A;  2NZM A;  4OJ6 A;  4MXN A;  4XOP A;  3B4N A;  4XM3 A;  2Z8G A;  4U4B A;  4AVZ A;  2VJI A;  3VMW A;  4YEJ A;  4XNF A;  3GQ7 A;  2X3H A;  1BHE A;  2PEC A;  1O8G A;  1QCX A;  4U49 A;  1JTA A;  4XL9 A;  4YEL A;  5C1C A;  5AMV A;  4XN3 A;  1GQ8 A;  2INV A;  4XOR A;  1IDK A;  2X6X A;  2O17 A;  4W8R A;  2ODL A;  3GQ9 A;  4OJ5 A;  5C1E A;  4OZY A;  2QX3 A;  4NK8 A;  4XKV A;  2PYH A;  4W8T A;  3SUC A;  2O0V A;  4YZX A;  1DBO A;  2INU A;  1OFL A;  4NK6 A;  4XLA A;  3KRG A;  4Z05 A;  4XLC A;  3B90 A;  2X85 A;  3FY3 A;  4Z06 A;  2UVF A;  1EE6 A;  2O1D A;  1O8I A;  2NST A;  3VSU A;  1BN8 A;  1H80 A;  2X6Y A;  1DBG A;  4XMY A;  4XOT A;  1AIR A;  1O8E A;  1O8D A;  2VBK A;  4XQF A;  1KTW A;  3GQ8 A;  1NHC A;  1KCD A;  2O0W A;  1O8M A;  4URR A;  1OGO X;  1RWR A;  1O8L A;  1VBL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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