1OGMX

Dex49a from penicillium minioluteum
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
572
structure length
572
Chain Sequence
TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPFLPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Dextranase from Penicillium Minioluteum. Reaction Course, Crystal Structure, and Product Complex
pubmed doi rcsb
source organism Penicillium minioluteum
molecule tags Hydrolase
molecule keywords DEXTRANASE
total genus 184
structure length 572
sequence length 572
ec nomenclature ec 3.2.1.11: Dextranase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
X PF17433 Glyco_hydro_49N Glycosyl hydrolase family 49 N-terminal Ig-like domain
X PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
X PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1ogmX01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ogmX02
4XONA 4XN0A 2PYHA 3VMWA 4NK6A 1PE9A 2QY1A 2NT6A 2VJIA 3GRHA 2X85A 2NTQA 2NT9A 1RU4A 1DBOA 1O8DA 3KRGA 1IDJA 2NTPA 4XN3A 2X6XA 4YEJA 2UVEA 1O8GA 2NTBA 3GQ8A 4U4BA 2O1DA 2X6YA 4OJOA 1OGMX 2VJJA 4YZAA 4W8RA 1O8EA 3LMWA 2NSTA 1O8HA 1O8FA 2O17A 1RMGA 4XLHA 4OJLA 3VSVA 5AMVA 4XM3A 1OFLA 1O8IA 4XR6A 1KCCA 4AVZA 5C1EA 2QXZA 4XOPA 4YZ0A 1IA5A 1VBLA 1EE6A 2VBKA 3SUCA 1QCXA 3VMVA 3ZSCA 4XKVA 4URRA 1OGOX 4OJ6A 2ODLA 3VSUA 3GQ7A 2INUA 2Z8GA 1NHCA 2O0WA 2X6WA 1X0CA 3JURA 4MR0A 2BSPA 4OJ5A 1BHEA 1DBGA 3FY3A 4XORA 4YZQA 1IB4A 2X3HA 3B90A 4YELA 2O04A 1XG2A 2NZMA 4OZYA 4PMHA 3VSTA 5C1CA 1RWRA 1O88A 1O8KA 2PYGA 4I84A 4Z03A 3UW0A 4C2LA 1AIRA 1O8LA 2PECA 2INVA 4W8SA 1H80A 2NSPA 4OZZA 2IQ7A 4XKWA 4Z05A 3B4NA 1WMRA 4YZXA 4XQFA 1OOCA 4W8QA 4XLCA 3GQ9A 2EWEA 1CZFA 4MXNA 4XL9A 4XMYA 1GQ8A 1O8MA 1QJVA 3ZPPA 4EW9A 2UVFA 4XLFA 1KTWA 2QX3A 3B8YA 4OJPA 4W8TA 3WWGA 1BN8A 4NK8A 1K5CA 4XLAA 4U49A 2VBMA 3T9GA 1KCDA 2VBEA 1JRGA 3GQAA 3EQNA 3EQOA 1OFMA 1PLUA 4XNFA 4XLEA 1JTAA 4XOTA 4Z06A 1PXZA 1O8JA 4HWVA 2O0VA 1IDKA 1HG8A
chains in the Genus database with same CATH superfamily
4XONA 4XN0A 2PYHA 3VMWA 4NK6A 1WXRA 1PE9A 2QY1A 1K4ZA 2NT6A 2QYUA 2VJIA 3GRHA 2X85A 2NTQA 3NB2A 2NT9A 5JMCB 2BM4A 1RU4A 2W7ZA 1QRCA 1DBOA 2XTXA 1O8DA 3JX8A 3KRGA 4YCQA 1IDJA 2NTPA 2XT4A 2X6XA 4XN3A 4YEJA 2UVEA 1O8GA 1QA1A 2NTBA 3GQ8A 3BH7B 4U4BA 4YC5A 1TYUA 2O1DA 2B0RA 2X6YA 4OJOA 4YEIA 3PSSA 1OGMX 2VJJA 5DNSA 3NAWA 4YZAA 2VFQA 4W8RA 1O8EA 3LMWA 2NSTA 1O8HA 3N90A 2BM5A 2VFMA 1O8FA 2O17A 1RMGA 4XLHA 4OJLA 3VSVA 5AMVA 4XM3A 3AK5A 1OFLA 1EA0A 1O8IA 1LLWA 3SZEA 4XR6A 2YUHA 1KCCA 3P4GA 2F3LA 4AVZA 5C1EA 3PETA 1K8FA 2QXZA 4XOPA 1QQ1A 1TYVA 4YZ0A 1IA5A 1VBLA 1EE6A 2VBKA 2O6WA 3SUCA 1QCXA 3VMVA 3ZSCA 1QRBA 4XKVA 4URRA 1OGOX 4OJ6A 1TYXA 2ODLA 4V02C 3VSUA 1TSPA 3GQ7A 2J8KA 1OFDA 2INUA 3SYJA 2Z8GA 1LLZA 1NHCA 2O0WA 3N6ZA 2X6WA 3LYCA 3BH6B 1X0CA 2XT2A 3JURA 4MR0A 2BSPA 1HF2A 4OJ5A 1BHEA 1DBGA 3FY3A 4XORA 4YZQA 1IB4A 2X3HA 3B90A 4YELA 2VFOA 2O04A 4OPWA 5JLVC 1XG2A 2NZMA 4OZYA 4PMHA 3VSTA 5C1CA 4YDTA 1RWRA 1O88A 1O8KA 2PYGA 4I84A 4OM9A 4Z03A 3UW0A 4C2LA 1AIRA 1O8LA 2PECA 2INVA 2G0YA 4W8SA 1H80A 2NSPA 4OZZA 2IQ7A 4XKWA 4Z05A 3B4NA 1WMRA 4JRAC 4YZXA 4XQFA 2XC1A 1LM1A 1OOCA 4W8QA 4XLCA 3GQ9A 1TYWA 2EWEA 2VFNA 3RIQA 1QA3A 1CZFA 4MXNA 4XL9A 2BM6A 2J8IA 3H09A 4XMYA 1GQ8A 1O8MA 1QJVA 3ZPPA 4EW9A 2QZAA 1KQ5A 2UVFA 2VFPA 4XLFA 4YFOA 3TH0A 1QA2A 2XTWA 1KTWA 2QX3A 3B8YA 4OJPA 1DABA 3DU1X 4W8TA 3WWGA 1L1IA 1BN8A 4NK8A 1K5CA 1OFEA 4XLAA 3PSZA 4U49A 2VBMA 3T9GA 1KCDA 2VBEA 1JRGA 3GQAA 3EQNA 3EQOA 3SY2A 1CLWA 2BM7A 2V5IA 1EZGA 2BX6A 3SQVA 4KH3A 1OFMA 1PLUA 3ML3A 3LJYA 4XLEA 4XNFA 1JTAA 2IOUG 2XTYA 4XOTA 1PXZA 1O8JA 4Z06A 4HWVA 2O0VA 1IDKA 1HG8A
chains in the Genus database with same CATH topology
4XONA 4XN0A 2PYHA 3VMWA 4NK6A 1PE9A 2QY1A 2NT6A 2VJIA 3GRHA 2X85A 2NTQA 2NT9A 1RU4A 1DBOA 1O8DA 3KRGA 1IDJA 2NTPA 4XN3A 2X6XA 4YEJA 2UVEA 1O8GA 2NTBA 3GQ8A 4U4BA 2O1DA 2X6YA 4OJOA 1OGMX 2VJJA 4YZAA 4W8RA 1O8EA 3LMWA 2NSTA 1O8HA 1O8FA 2O17A 1RMGA 4XLHA 4OJLA 3VSVA 5AMVA 4XM3A 1OFLA 1O8IA 4XR6A 1KCCA 4AVZA 5C1EA 2QXZA 4XOPA 4YZ0A 1IA5A 1VBLA 1EE6A 2VBKA 3SUCA 1QCXA 3VMVA 3ZSCA 4XKVA 4URRA 1OGOX 4OJ6A 2ODLA 3VSUA 3GQ7A 2INUA 2Z8GA 1NHCA 2O0WA 2X6WA 1X0CA 3JURA 4MR0A 2BSPA 4OJ5A 1BHEA 1DBGA 3FY3A 4XORA 4YZQA 1IB4A 2X3HA 3B90A 4YELA 2O04A 1XG2A 2NZMA 4OZYA 4PMHA 3VSTA 5C1CA 1RWRA 1O88A 1O8KA 2PYGA 4I84A 4Z03A 3UW0A 4C2LA 1AIRA 1O8LA 2PECA 2INVA 4W8SA 1H80A 2NSPA 4OZZA 2IQ7A 4XKWA 4Z05A 3B4NA 1WMRA 4YZXA 4XQFA 1OOCA 4W8QA 4XLCA 3GQ9A 2EWEA 1CZFA 4MXNA 4XL9A 4XMYA 1GQ8A 1O8MA 1QJVA 3ZPPA 4EW9A 2UVFA 4XLFA 1KTWA 2QX3A 3B8YA 4OJPA 4W8TA 3WWGA 1BN8A 4NK8A 1K5CA 4XLAA 4U49A 2VBMA 3T9GA 1KCDA 2VBEA 1JRGA 3GQAA 3EQNA 3EQOA 1OFMA 1PLUA 4XNFA 4XLEA 1JTAA 4XOTA 4Z06A 1PXZA 1O8JA 4HWVA 2O0VA 1IDKA 1HG8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XON A;  4XN0 A;  2PYH A;  3VMW A;  4NK6 A;  1PE9 A;  2QY1 A;  2NT6 A;  2VJI A;  3GRH A;  2X85 A;  2NTQ A;  2NT9 A;  1RU4 A;  1DBO A;  1O8D A;  3KRG A;  1IDJ A;  2NTP A;  4XN3 A;  2X6X A;  4YEJ A;  2UVE A;  1O8G A;  2NTB A;  3GQ8 A;  4U4B A;  2O1D A;  2X6Y A;  4OJO A;  1OGM X;  2VJJ A;  4YZA A;  4W8R A;  1O8E A;  3LMW A;  2NST A;  1O8H A;  1O8F A;  2O17 A;  1RMG A;  4XLH A;  4OJL A;  3VSV A;  5AMV A;  4XM3 A;  1OFL A;  1O8I A;  4XR6 A;  1KCC A;  4AVZ A;  5C1E A;  2QXZ A;  4XOP A;  4YZ0 A;  1IA5 A;  1VBL A;  1EE6 A;  2VBK A;  3SUC A;  1QCX A;  3VMV A;  3ZSC A;  4XKV A;  4URR A;  1OGO X;  4OJ6 A;  2ODL A;  3VSU A;  3GQ7 A;  2INU A;  2Z8G A;  1NHC A;  2O0W A;  2X6W A;  1X0C A;  3JUR A;  4MR0 A;  2BSP A;  4OJ5 A;  1BHE A;  1DBG A;  3FY3 A;  4XOR A;  4YZQ A;  1IB4 A;  2X3H A;  3B90 A;  4YEL A;  2O04 A;  1XG2 A;  2NZM A;  4OZY A;  4PMH A;  3VST A;  5C1C A;  1RWR A;  1O88 A;  1O8K A;  2PYG A;  4I84 A;  4Z03 A;  3UW0 A;  4C2L A;  1AIR A;  1O8L A;  2PEC A;  2INV A;  4W8S A;  1H80 A;  2NSP A;  4OZZ A;  2IQ7 A;  4XKW A;  4Z05 A;  3B4N A;  1WMR A;  4YZX A;  4XQF A;  1OOC A;  4W8Q A;  4XLC A;  3GQ9 A;  2EWE A;  1CZF A;  4MXN A;  4XL9 A;  4XMY A;  1GQ8 A;  1O8M A;  1QJV A;  3ZPP A;  4EW9 A;  2UVF A;  4XLF A;  1KTW A;  2QX3 A;  3B8Y A;  4OJP A;  4W8T A;  3WWG A;  1BN8 A;  4NK8 A;  1K5C A;  4XLA A;  4U49 A;  2VBM A;  3T9G A;  1KCD A;  2VBE A;  1JRG A;  3GQA A;  3EQN A;  3EQO A;  1OFM A;  1PLU A;  4XNF A;  4XLE A;  1JTA A;  4XOT A;  4Z06 A;  1PXZ A;  1O8J A;  4HWV A;  2O0V A;  1IDK A;  1HG8 A; 
#chains in the Genus database with same CATH topology
 4XON A;  4XN0 A;  2PYH A;  3VMW A;  4NK6 A;  1WXR A;  1PE9 A;  2QY1 A;  1K4Z A;  2NT6 A;  2QYU A;  2VJI A;  3GRH A;  2X85 A;  2NTQ A;  3NB2 A;  2NT9 A;  5JMC B;  2BM4 A;  1RU4 A;  2W7Z A;  1QRC A;  1DBO A;  2XTX A;  1O8D A;  3JX8 A;  3KRG A;  4YCQ A;  1IDJ A;  2NTP A;  2XT4 A;  2X6X A;  4XN3 A;  4YEJ A;  2UVE A;  1O8G A;  1QA1 A;  2NTB A;  3GQ8 A;  3BH7 B;  4U4B A;  4YC5 A;  1TYU A;  2O1D A;  2B0R A;  2X6Y A;  4OJO A;  4YEI A;  3PSS A;  1OGM X;  2VJJ A;  5DNS A;  3NAW A;  4YZA A;  2VFQ A;  4W8R A;  1O8E A;  3LMW A;  2NST A;  1O8H A;  3N90 A;  2BM5 A;  2VFM A;  1O8F A;  2O17 A;  1RMG A;  4XLH A;  4OJL A;  3VSV A;  5AMV A;  4XM3 A;  3AK5 A;  1OFL A;  1EA0 A;  1O8I A;  1LLW A;  3SZE A;  4XR6 A;  2YUH A;  1KCC A;  3P4G A;  2F3L A;  4AVZ A;  5C1E A;  3PET A;  1K8F A;  2QXZ A;  4XOP A;  1QQ1 A;  1TYV A;  4YZ0 A;  1IA5 A;  1VBL A;  1EE6 A;  2VBK A;  2O6W A;  3SUC A;  1QCX A;  3VMV A;  3ZSC A;  1QRB A;  4XKV A;  4URR A;  1OGO X;  4OJ6 A;  1TYX A;  2ODL A;  4V02 C;  3VSU A;  1TSP A;  3GQ7 A;  2J8K A;  1OFD A;  2INU A;  3SYJ A;  2Z8G A;  1LLZ A;  1NHC A;  2O0W A;  3N6Z A;  2X6W A;  3LYC A;  3BH6 B;  1X0C A;  2XT2 A;  3JUR A;  4MR0 A;  2BSP A;  1HF2 A;  4OJ5 A;  1BHE A;  1DBG A;  3FY3 A;  4XOR A;  4YZQ A;  1IB4 A;  2X3H A;  3B90 A;  4YEL A;  2VFO A;  2O04 A;  4OPW A;  5JLV C;  1XG2 A;  2NZM A;  4OZY A;  4PMH A;  3VST A;  5C1C A;  4YDT A;  1RWR A;  1O88 A;  1O8K A;  2PYG A;  4I84 A;  4OM9 A;  4Z03 A;  3UW0 A;  4C2L A;  1AIR A;  1O8L A;  2PEC A;  2INV A;  2G0Y A;  4W8S A;  1H80 A;  2NSP A;  4OZZ A;  2IQ7 A;  4XKW A;  4Z05 A;  3B4N A;  1WMR A;  4JRA C;  4YZX A;  4XQF A;  2XC1 A;  1LM1 A;  1OOC A;  4W8Q A;  4XLC A;  3GQ9 A;  1TYW A;  2EWE A;  2VFN A;  3RIQ A;  1QA3 A;  1CZF A;  4MXN A;  4XL9 A;  2BM6 A;  2J8I A;  3H09 A;  4XMY A;  1GQ8 A;  1O8M A;  1QJV A;  3ZPP A;  4EW9 A;  2QZA A;  1KQ5 A;  2UVF A;  2VFP A;  4XLF A;  4YFO A;  3TH0 A;  1QA2 A;  2XTW A;  1KTW A;  2QX3 A;  3B8Y A;  4OJP A;  1DAB A;  3DU1 X;  4W8T A;  3WWG A;  1L1I A;  1BN8 A;  4NK8 A;  1K5C A;  1OFE A;  4XLA A;  3PSZ A;  4U49 A;  2VBM A;  3T9G A;  1KCD A;  2VBE A;  1JRG A;  3GQA A;  3EQN A;  3EQO A;  3SY2 A;  1CLW A;  2BM7 A;  2V5I A;  1EZG A;  2BX6 A;  3SQV A;  4KH3 A;  1OFM A;  1PLU A;  3ML3 A;  3LJY A;  4XLE A;  4XNF A;  1JTA A;  2IOU G;  2XTY A;  4XOT A;  1PXZ A;  1O8J A;  4Z06 A;  4HWV A;  2O0V A;  1IDK A;  1HG8 A; 
#chains in the Genus database with same CATH homology
 4XON A;  4XN0 A;  2PYH A;  3VMW A;  4NK6 A;  1PE9 A;  2QY1 A;  2NT6 A;  2VJI A;  3GRH A;  2X85 A;  2NTQ A;  2NT9 A;  1RU4 A;  1DBO A;  1O8D A;  3KRG A;  1IDJ A;  2NTP A;  4XN3 A;  2X6X A;  4YEJ A;  2UVE A;  1O8G A;  2NTB A;  3GQ8 A;  4U4B A;  2O1D A;  2X6Y A;  4OJO A;  1OGM X;  2VJJ A;  4YZA A;  4W8R A;  1O8E A;  3LMW A;  2NST A;  1O8H A;  1O8F A;  2O17 A;  1RMG A;  4XLH A;  4OJL A;  3VSV A;  5AMV A;  4XM3 A;  1OFL A;  1O8I A;  4XR6 A;  1KCC A;  4AVZ A;  5C1E A;  2QXZ A;  4XOP A;  4YZ0 A;  1IA5 A;  1VBL A;  1EE6 A;  2VBK A;  3SUC A;  1QCX A;  3VMV A;  3ZSC A;  4XKV A;  4URR A;  1OGO X;  4OJ6 A;  2ODL A;  3VSU A;  3GQ7 A;  2INU A;  2Z8G A;  1NHC A;  2O0W A;  2X6W A;  1X0C A;  3JUR A;  4MR0 A;  2BSP A;  4OJ5 A;  1BHE A;  1DBG A;  3FY3 A;  4XOR A;  4YZQ A;  1IB4 A;  2X3H A;  3B90 A;  4YEL A;  2O04 A;  1XG2 A;  2NZM A;  4OZY A;  4PMH A;  3VST A;  5C1C A;  1RWR A;  1O88 A;  1O8K A;  2PYG A;  4I84 A;  4Z03 A;  3UW0 A;  4C2L A;  1AIR A;  1O8L A;  2PEC A;  2INV A;  4W8S A;  1H80 A;  2NSP A;  4OZZ A;  2IQ7 A;  4XKW A;  4Z05 A;  3B4N A;  1WMR A;  4YZX A;  4XQF A;  1OOC A;  4W8Q A;  4XLC A;  3GQ9 A;  2EWE A;  1CZF A;  4MXN A;  4XL9 A;  4XMY A;  1GQ8 A;  1O8M A;  1QJV A;  3ZPP A;  4EW9 A;  2UVF A;  4XLF A;  1KTW A;  2QX3 A;  3B8Y A;  4OJP A;  4W8T A;  3WWG A;  1BN8 A;  4NK8 A;  1K5C A;  4XLA A;  4U49 A;  2VBM A;  3T9G A;  1KCD A;  2VBE A;  1JRG A;  3GQA A;  3EQN A;  3EQO A;  1OFM A;  1PLU A;  4XNF A;  4XLE A;  1JTA A;  4XOT A;  4Z06 A;  1PXZ A;  1O8J A;  4HWV A;  2O0V A;  1IDK A;  1HG8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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