1OGMX

Dex49a from penicillium minioluteum
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
572
structure length
572
Chain Sequence
TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPFLPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Dextranase from Penicillium Minioluteum. Reaction Course, Crystal Structure, and Product Complex
pubmed doi rcsb
source organism Penicillium minioluteum
molecule tags Hydrolase
molecule keywords DEXTRANASE
total genus 184
structure length 572
sequence length 572
ec nomenclature ec 3.2.1.11: Dextranase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
X PF17433 Glyco_hydro_49N Glycosyl hydrolase family 49 N-terminal Ig-like domain
X PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
X PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1ogmX01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ogmX02
4XLHA 2VBMA 1PXZA 4XORA 3ZSCA 1QJVA 2BSPA 1KCDA 4XOTA 4XN0A 1O8MA 1AIRA 2VBEA 3KRGA 4XOPA 4OJ6A 3UW0A 4OJ5A 4XONA 4XR6A 2QY1A 1OGMX 4XLAA 1O8FA 2IQ7A 2Z8GA 2VBKA 4PMHA 3GQAA 1H80A 4OJLA 5C1CA 1O8IA 1O8EA 4NK8A 3EQNA 4YZAA 1DBOA 4XL9A 4XLEA 3LMWA 3SUCA 4YEJA 2O17A 4W8QA 2PECA 2EWEA 4OZYA 4YZQA 1IB4A 4MR0A 2VJIA 4Z06A 1VBLA 3VMVA 4XKWA 1OFLA 2NZMA 4OZZA 3VSTA 1K5CA 4XNFA 2O04A 2ODLA 2X6YA 2O0VA 1O8KA 5AMVA 4AVZA 1BN8A 4XQFA 1PLUA 3WWGA 2QXZA 3FY3A 3EQOA 3ZPPA 5C1EA 1WMRA 4OJPA 2VJJA 2NTBA 1IDKA 1OFMA 3GQ7A 1KTWA 3VMWA 1CZFA 4URRA 4XM3A 3B8YA 2PYGA 1O8LA 1IA5A 4U4BA 1EE6A 2UVEA 4W8RA 1JTAA 2X85A 4XN3A 1OOCA 1RWRA 1BHEA 1O8JA 1HG8A 4U49A 1O8HA 1X0CA 4YZ0A 4EW9A 1PE9A 4Z03A 2INVA 3VSVA 4MXNA 2NT6A 1IDJA 4C2LA 2INUA 4I84A 1DBGA 4YELA 2X6XA 3B90A 3GQ9A 4W8TA 2UVFA 4YZXA 2QX3A 2X6WA 3VSUA 2O1DA 1RMGA 4W8SA 3B4NA 2O0WA 1XG2A 2NTQA 2NTPA 3JURA 4NK6A 4XMYA 3GRHA 4XLCA 3GQ8A 1OGOX 2NSPA 2X3HA 1KCCA 1O8DA 1NHCA 2NSTA 4XKVA 4HWVA 1O8GA 4OJOA 1GQ8A 1O88A 3T9GA 2PYHA 1JRGA 1RU4A 2NT9A 1QCXA 4Z05A 4XLFA
chains in the Genus database with same CATH superfamily
4XLHA 2VBMA 1PXZA 4XORA 3ZSCA 1DABA 1QJVA 2BSPA 3SY2A 1KCDA 1TYVA 4XOTA 4XN0A 1O8MA 3N6ZA 1LLWA 1AIRA 2VBEA 3KRGA 2XTWA 4XOPA 4OJ6A 1TSPA 3UW0A 4OJ5A 4XONA 4XR6A 2QY1A 1OGMX 2XTYA 3N90A 1CLWA 4XLAA 1O8FA 2IQ7A 2Z8GA 2VBKA 4PMHA 2W7ZA 3GQAA 2F3LA 4OPWA 1H80A 4OJLA 2XTXA 1O8IA 1O8EA 5C1CA 4NK8A 3EQNA 1EA0A 4YZAA 1TYUA 1DBOA 4YFOA 4XL9A 1WXRA 2YUHA 1TYWA 3LMWA 4XLEA 4OM9A 4YEJA 3SUCA 2O17A 4W8QA 3P4GA 2BM6A 2EWEA 2PECA 3BH6B 4OZYA 4YZQA 1IB4A 1L1IA 4MR0A 2VJIA 4Z06A 3SZEA 3BH7B 1VBLA 3VMVA 2QZAA 1EZGA 4XKWA 4YDTA 1OFLA 2NZMA 4OZZA 3VSTA 1K5CA 2VFMA 4KH3A 1QA1A 4XNFA 2O04A 2ODLA 2J8IA 2X6YA 2O0VA 1O8KA 5JLVC 5AMVA 4JRAC 4AVZA 1QA2A 1BN8A 2QYUA 4XQFA 1PLUA 3WWGA 2QXZA 3FY3A 3EQOA 3ZPPA 5C1EA 1WMRA 4OJPA 2VJJA 1QQ1A 2NTBA 2BM7A 1IDKA 2XC1A 5DNSA 1OFMA 3GQ7A 1KTWA 3VMWA 2J8KA 1CZFA 4URRA 4XM3A 5JMCB 1HF2A 3B8YA 2PYGA 1O8LA 4YEIA 1IA5A 4U4BA 1EE6A 2UVEA 3NAWA 4W8RA 1JTAA 3RIQA 2V5IA 2O6WA 2X85A 1K8FA 4XN3A 1OOCA 3LYCA 1RWRA 2IOUG 1BHEA 1O8JA 1OFEA 1HG8A 4U49A 1QA3A 2XT2A 3SYJA 1O8HA 1X0CA 3ML3A 3AK5A 4YZ0A 4EW9A 3H09A 1PE9A 4Z03A 2INVA 2BM4A 3VSVA 1OFDA 3LJYA 4MXNA 3PSSA 2NT6A 2XT4A 1IDJA 3TH0A 4C2LA 2INUA 4I84A 1KQ5A 1DBGA 3DU1X 4YELA 2X6XA 3B90A 4YCQA 3GQ9A 2VFOA 1QRBA 2UVFA 2QX3A 2X6WA 4W8TA 4YZXA 2O1DA 3VSUA 2VFNA 2BM5A 1K4ZA 1RMGA 3NB2A 4W8SA 3B4NA 2O0WA 4V02C 1XG2A 2NTQA 2NTPA 3JURA 4NK6A 2VFPA 1QRCA 1LLZA 4XMYA 3GRHA 4XLCA 3GQ8A 1OGOX 2G0YA 2NSPA 2X3HA 3SQVA 1KCCA 1O8DA 1NHCA 2BX6A 4YC5A 2NSTA 4XKVA 4HWVA 1O8GA 3PSZA 4OJOA 1GQ8A 3JX8A 1O88A 3PETA 3T9GA 2B0RA 1JRGA 1RU4A 2PYHA 2NT9A 1QCXA 1LM1A 1TYXA 2VFQA 4Z05A 4XLFA
chains in the Genus database with same CATH topology
4XLHA 2VBMA 1PXZA 4XORA 3ZSCA 1QJVA 2BSPA 1KCDA 4XOTA 4XN0A 1O8MA 1AIRA 2VBEA 3KRGA 4XOPA 4OJ6A 3UW0A 4OJ5A 4XONA 4XR6A 2QY1A 1OGMX 4XLAA 1O8FA 2IQ7A 2Z8GA 2VBKA 4PMHA 3GQAA 1H80A 4OJLA 5C1CA 1O8IA 1O8EA 4NK8A 3EQNA 4YZAA 1DBOA 4XL9A 4XLEA 3LMWA 3SUCA 4YEJA 2O17A 4W8QA 2PECA 2EWEA 4OZYA 4YZQA 1IB4A 4MR0A 2VJIA 4Z06A 1VBLA 3VMVA 4XKWA 1OFLA 2NZMA 4OZZA 3VSTA 1K5CA 4XNFA 2O04A 2ODLA 2X6YA 2O0VA 1O8KA 5AMVA 4AVZA 1BN8A 4XQFA 1PLUA 3WWGA 2QXZA 3FY3A 3EQOA 3ZPPA 5C1EA 1WMRA 4OJPA 2VJJA 2NTBA 1IDKA 1OFMA 3GQ7A 1KTWA 3VMWA 1CZFA 4URRA 4XM3A 3B8YA 2PYGA 1O8LA 1IA5A 4U4BA 1EE6A 2UVEA 4W8RA 1JTAA 2X85A 4XN3A 1OOCA 1RWRA 1BHEA 1O8JA 1HG8A 4U49A 1O8HA 1X0CA 4YZ0A 4EW9A 1PE9A 4Z03A 2INVA 3VSVA 4MXNA 2NT6A 1IDJA 4C2LA 2INUA 4I84A 1DBGA 4YELA 2X6XA 3B90A 3GQ9A 4W8TA 2UVFA 4YZXA 2QX3A 2X6WA 3VSUA 2O1DA 1RMGA 4W8SA 3B4NA 2O0WA 1XG2A 2NTQA 2NTPA 3JURA 4NK6A 4XMYA 3GRHA 4XLCA 3GQ8A 1OGOX 2NSPA 2X3HA 1KCCA 1O8DA 1NHCA 2NSTA 4XKVA 4HWVA 1O8GA 4OJOA 1GQ8A 1O88A 3T9GA 2PYHA 1JRGA 1RU4A 2NT9A 1QCXA 4Z05A 4XLFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XLH A;  2VBM A;  1PXZ A;  4XOR A;  3ZSC A;  1QJV A;  2BSP A;  1KCD A;  4XOT A;  4XN0 A;  1O8M A;  1AIR A;  2VBE A;  3KRG A;  4XOP A;  4OJ6 A;  3UW0 A;  4OJ5 A;  4XON A;  4XR6 A;  2QY1 A;  1OGM X;  4XLA A;  1O8F A;  2IQ7 A;  2Z8G A;  2VBK A;  4PMH A;  3GQA A;  1H80 A;  4OJL A;  5C1C A;  1O8I A;  1O8E A;  4NK8 A;  3EQN A;  4YZA A;  1DBO A;  4XL9 A;  4XLE A;  3LMW A;  3SUC A;  4YEJ A;  2O17 A;  4W8Q A;  2PEC A;  2EWE A;  4OZY A;  4YZQ A;  1IB4 A;  4MR0 A;  2VJI A;  4Z06 A;  1VBL A;  3VMV A;  4XKW A;  1OFL A;  2NZM A;  4OZZ A;  3VST A;  1K5C A;  4XNF A;  2O04 A;  2ODL A;  2X6Y A;  2O0V A;  1O8K A;  5AMV A;  4AVZ A;  1BN8 A;  4XQF A;  1PLU A;  3WWG A;  2QXZ A;  3FY3 A;  3EQO A;  3ZPP A;  5C1E A;  1WMR A;  4OJP A;  2VJJ A;  2NTB A;  1IDK A;  1OFM A;  3GQ7 A;  1KTW A;  3VMW A;  1CZF A;  4URR A;  4XM3 A;  3B8Y A;  2PYG A;  1O8L A;  1IA5 A;  4U4B A;  1EE6 A;  2UVE A;  4W8R A;  1JTA A;  2X85 A;  4XN3 A;  1OOC A;  1RWR A;  1BHE A;  1O8J A;  1HG8 A;  4U49 A;  1O8H A;  1X0C A;  4YZ0 A;  4EW9 A;  1PE9 A;  4Z03 A;  2INV A;  3VSV A;  4MXN A;  2NT6 A;  1IDJ A;  4C2L A;  2INU A;  4I84 A;  1DBG A;  4YEL A;  2X6X A;  3B90 A;  3GQ9 A;  4W8T A;  2UVF A;  4YZX A;  2QX3 A;  2X6W A;  3VSU A;  2O1D A;  1RMG A;  4W8S A;  3B4N A;  2O0W A;  1XG2 A;  2NTQ A;  2NTP A;  3JUR A;  4NK6 A;  4XMY A;  3GRH A;  4XLC A;  3GQ8 A;  1OGO X;  2NSP A;  2X3H A;  1KCC A;  1O8D A;  1NHC A;  2NST A;  4XKV A;  4HWV A;  1O8G A;  4OJO A;  1GQ8 A;  1O88 A;  3T9G A;  2PYH A;  1JRG A;  1RU4 A;  2NT9 A;  1QCX A;  4Z05 A;  4XLF A; 
#chains in the Genus database with same CATH topology
 4XLH A;  2VBM A;  1PXZ A;  4XOR A;  3ZSC A;  1DAB A;  1QJV A;  2BSP A;  3SY2 A;  1KCD A;  1TYV A;  4XOT A;  4XN0 A;  1O8M A;  3N6Z A;  1LLW A;  1AIR A;  2VBE A;  3KRG A;  2XTW A;  4XOP A;  4OJ6 A;  1TSP A;  3UW0 A;  4OJ5 A;  4XON A;  4XR6 A;  2QY1 A;  1OGM X;  2XTY A;  3N90 A;  1CLW A;  4XLA A;  1O8F A;  2IQ7 A;  2Z8G A;  2VBK A;  4PMH A;  2W7Z A;  3GQA A;  2F3L A;  4OPW A;  1H80 A;  4OJL A;  2XTX A;  1O8I A;  1O8E A;  5C1C A;  4NK8 A;  3EQN A;  1EA0 A;  4YZA A;  1TYU A;  1DBO A;  4YFO A;  4XL9 A;  1WXR A;  2YUH A;  1TYW A;  3LMW A;  4XLE A;  4OM9 A;  4YEJ A;  3SUC A;  2O17 A;  4W8Q A;  3P4G A;  2BM6 A;  2EWE A;  2PEC A;  3BH6 B;  4OZY A;  4YZQ A;  1IB4 A;  1L1I A;  4MR0 A;  2VJI A;  4Z06 A;  3SZE A;  3BH7 B;  1VBL A;  3VMV A;  2QZA A;  1EZG A;  4XKW A;  4YDT A;  1OFL A;  2NZM A;  4OZZ A;  3VST A;  1K5C A;  2VFM A;  4KH3 A;  1QA1 A;  4XNF A;  2O04 A;  2ODL A;  2J8I A;  2X6Y A;  2O0V A;  1O8K A;  5JLV C;  5AMV A;  4JRA C;  4AVZ A;  1QA2 A;  1BN8 A;  2QYU A;  4XQF A;  1PLU A;  3WWG A;  2QXZ A;  3FY3 A;  3EQO A;  3ZPP A;  5C1E A;  1WMR A;  4OJP A;  2VJJ A;  1QQ1 A;  2NTB A;  2BM7 A;  1IDK A;  2XC1 A;  5DNS A;  1OFM A;  3GQ7 A;  1KTW A;  3VMW A;  2J8K A;  1CZF A;  4URR A;  4XM3 A;  5JMC B;  1HF2 A;  3B8Y A;  2PYG A;  1O8L A;  4YEI A;  1IA5 A;  4U4B A;  1EE6 A;  2UVE A;  3NAW A;  4W8R A;  1JTA A;  3RIQ A;  2V5I A;  2O6W A;  2X85 A;  1K8F A;  4XN3 A;  1OOC A;  3LYC A;  1RWR A;  2IOU G;  1BHE A;  1O8J A;  1OFE A;  1HG8 A;  4U49 A;  1QA3 A;  2XT2 A;  3SYJ A;  1O8H A;  1X0C A;  3ML3 A;  3AK5 A;  4YZ0 A;  4EW9 A;  3H09 A;  1PE9 A;  4Z03 A;  2INV A;  2BM4 A;  3VSV A;  1OFD A;  3LJY A;  4MXN A;  3PSS A;  2NT6 A;  2XT4 A;  1IDJ A;  3TH0 A;  4C2L A;  2INU A;  4I84 A;  1KQ5 A;  1DBG A;  3DU1 X;  4YEL A;  2X6X A;  3B90 A;  4YCQ A;  3GQ9 A;  2VFO A;  1QRB A;  2UVF A;  2QX3 A;  2X6W A;  4W8T A;  4YZX A;  2O1D A;  3VSU A;  2VFN A;  2BM5 A;  1K4Z A;  1RMG A;  3NB2 A;  4W8S A;  3B4N A;  2O0W A;  4V02 C;  1XG2 A;  2NTQ A;  2NTP A;  3JUR A;  4NK6 A;  2VFP A;  1QRC A;  1LLZ A;  4XMY A;  3GRH A;  4XLC A;  3GQ8 A;  1OGO X;  2G0Y A;  2NSP A;  2X3H A;  3SQV A;  1KCC A;  1O8D A;  1NHC A;  2BX6 A;  4YC5 A;  2NST A;  4XKV A;  4HWV A;  1O8G A;  3PSZ A;  4OJO A;  1GQ8 A;  3JX8 A;  1O88 A;  3PET A;  3T9G A;  2B0R A;  1JRG A;  1RU4 A;  2PYH A;  2NT9 A;  1QCX A;  1LM1 A;  1TYX A;  2VFQ A;  4Z05 A;  4XLF A; 
#chains in the Genus database with same CATH homology
 4XLH A;  2VBM A;  1PXZ A;  4XOR A;  3ZSC A;  1QJV A;  2BSP A;  1KCD A;  4XOT A;  4XN0 A;  1O8M A;  1AIR A;  2VBE A;  3KRG A;  4XOP A;  4OJ6 A;  3UW0 A;  4OJ5 A;  4XON A;  4XR6 A;  2QY1 A;  1OGM X;  4XLA A;  1O8F A;  2IQ7 A;  2Z8G A;  2VBK A;  4PMH A;  3GQA A;  1H80 A;  4OJL A;  5C1C A;  1O8I A;  1O8E A;  4NK8 A;  3EQN A;  4YZA A;  1DBO A;  4XL9 A;  4XLE A;  3LMW A;  3SUC A;  4YEJ A;  2O17 A;  4W8Q A;  2PEC A;  2EWE A;  4OZY A;  4YZQ A;  1IB4 A;  4MR0 A;  2VJI A;  4Z06 A;  1VBL A;  3VMV A;  4XKW A;  1OFL A;  2NZM A;  4OZZ A;  3VST A;  1K5C A;  4XNF A;  2O04 A;  2ODL A;  2X6Y A;  2O0V A;  1O8K A;  5AMV A;  4AVZ A;  1BN8 A;  4XQF A;  1PLU A;  3WWG A;  2QXZ A;  3FY3 A;  3EQO A;  3ZPP A;  5C1E A;  1WMR A;  4OJP A;  2VJJ A;  2NTB A;  1IDK A;  1OFM A;  3GQ7 A;  1KTW A;  3VMW A;  1CZF A;  4URR A;  4XM3 A;  3B8Y A;  2PYG A;  1O8L A;  1IA5 A;  4U4B A;  1EE6 A;  2UVE A;  4W8R A;  1JTA A;  2X85 A;  4XN3 A;  1OOC A;  1RWR A;  1BHE A;  1O8J A;  1HG8 A;  4U49 A;  1O8H A;  1X0C A;  4YZ0 A;  4EW9 A;  1PE9 A;  4Z03 A;  2INV A;  3VSV A;  4MXN A;  2NT6 A;  1IDJ A;  4C2L A;  2INU A;  4I84 A;  1DBG A;  4YEL A;  2X6X A;  3B90 A;  3GQ9 A;  4W8T A;  2UVF A;  4YZX A;  2QX3 A;  2X6W A;  3VSU A;  2O1D A;  1RMG A;  4W8S A;  3B4N A;  2O0W A;  1XG2 A;  2NTQ A;  2NTP A;  3JUR A;  4NK6 A;  4XMY A;  3GRH A;  4XLC A;  3GQ8 A;  1OGO X;  2NSP A;  2X3H A;  1KCC A;  1O8D A;  1NHC A;  2NST A;  4XKV A;  4HWV A;  1O8G A;  4OJO A;  1GQ8 A;  1O88 A;  3T9G A;  2PYH A;  1JRG A;  1RU4 A;  2NT9 A;  1QCX A;  4Z05 A;  4XLF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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