1OGMX

Dex49a from penicillium minioluteum
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
572
structure length
572
Chain Sequence
TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPFLPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Dextranase from Penicillium Minioluteum. Reaction Course, Crystal Structure, and Product Complex
pubmed doi rcsb
molecule tags Hydrolase
source organism Penicillium minioluteum
molecule keywords DEXTRANASE
total genus 184
structure length 572
sequence length 572
ec nomenclature ec 3.2.1.11: Dextranase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
X PF17433 Glyco_hydro_49N Glycosyl hydrolase family 49 N-terminal Ig-like domain
X PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
X PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1ogmX01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ogmX02
1VBLA 3SUCA 4U49A 2QY1A 2Z8GA 2QX3A 1PXZA 2VBMA 1IDJA 2EWEA 2NTQA 1NHCA 3GQAA 4XQFA 4MR0A 1RMGA 1O8FA 1PLUA 2INVA 4XORA 2NZMA 1QCXA 3GQ9A 4XKVA 4NK6A 4W8RA 2NT9A 1EE6A 4XOPA 4Z05A 1O8KA 4XM3A 1OGMX 1OFMA 1OOCA 1O8MA 4EW9A 1BN8A 2O1DA 4YZ0A 4YELA 2NTBA 3FY3A 4OJ6A 3B8YA 2X6XA 2VJIA 2PECA 2BSPA 1K5CA 2O0VA 1O8JA 4XMYA 1CZFA 1O8EA 4XLAA 3ZPPA 3VSVA 2X6WA 2O0WA 1KCCA 1BHEA 3WWGA 3EQNA 3VMVA 2VBKA 2VBEA 3B4NA 4PMHA 3VMWA 1O88A 4YZQA 4XL9A 4OJLA 1OFLA 1IDKA 1JRGA 2INUA 1OGOX 1DBOA 4YEJA 4C2LA 4OJOA 1JTAA 4OJPA 5C1CA 4W8TA 2UVEA 2O17A 3GQ8A 4XLCA 1H80A 1RWRA 4I84A 4Z06A 2X85A 4OZYA 2UVFA 4XLEA 1O8LA 1KTWA 3EQOA 1WMRA 1KCDA 3UW0A 4W8SA 1IB4A 1RU4A 3KRGA 3VSUA 2NT6A 3GRHA 3ZSCA 2NSTA 5AMVA 4OZZA 4XOTA 1AIRA 1O8IA 2PYGA 2X6YA 4YZAA 1O8GA 4Z03A 4XN3A 1QJVA 4XNFA 4OJ5A 2VJJA 1GQ8A 1O8HA 1X0CA 3LMWA 2NSPA 2IQ7A 4MXNA 4XONA 5C1EA 4W8QA 4XKWA 1DBGA 2ODLA 3B90A 1O8DA 4XR6A 2NTPA 3T9GA 4AVZA 1HG8A 2QXZA 4XLFA 3GQ7A 3JURA 4XN0A 4U4BA 1PE9A 3VSTA 1IA5A 2X3HA 4YZXA 4NK8A 4XLHA 4HWVA 2O04A 1XG2A 2PYHA 4URRA
chains in the Genus database with same CATH superfamily
2VFOA 1VBLA 3SUCA 2O6WA 4U49A 2QY1A 1EZGA 2Z8GA 1QRBA 3TH0A 2QX3A 3DU1X 3N90A 1PXZA 3H09A 2VBMA 1IDJA 2J8IA 1K4ZA 2EWEA 2NTQA 1NHCA 3GQAA 1QRCA 3LJYA 4XQFA 2W7ZA 4MR0A 1RMGA 1O8FA 1PLUA 2INVA 2VFQA 3NAWA 1EA0A 4XORA 2NZMA 1QCXA 3GQ9A 4XKVA 3ML3A 4NK6A 2NT9A 4W8RA 5JLVC 1EE6A 4XOPA 4Z05A 1O8KA 4XM3A 1OGMX 4YDTA 1OFMA 1OOCA 1O8MA 4EW9A 1BN8A 2O1DA 2QYUA 2XT4A 4YELA 4YZ0A 2V5IA 2XTWA 1CLWA 2NTBA 3FY3A 4OJ6A 3B8YA 2X6XA 2VJIA 2BM7A 4KH3A 3LYCA 3PSSA 2PECA 2BSPA 1OFDA 1K5CA 2O0VA 1TSPA 1O8JA 4XMYA 1CZFA 1O8EA 4OM9A 4XLAA 3ZPPA 3VSVA 2X6WA 1QA3A 4YCQA 3BH6B 2O0WA 1KCCA 1BHEA 3WWGA 3EQNA 1HF2A 1TYVA 2VBKA 2VBEA 3N6ZA 3B4NA 3PETA 3VMVA 4PMHA 3JX8A 3VMWA 1O88A 4YZQA 4XL9A 4OJLA 1WXRA 1OFLA 1JRGA 1IDKA 2INUA 1OGOX 3SY2A 1DBOA 4YEJA 4C2LA 4OJOA 1JTAA 1XG2A 2BM6A 4OJPA 2VFPA 2F3LA 5C1CA 4W8TA 2UVEA 3SQVA 2O17A 3GQ8A 4XLCA 2O04A 1H80A 1DABA 1TYUA 1RWRA 1QA1A 3BH7B 1L1IA 4YFOA 1K8FA 4I84A 4Z06A 2X85A 2XTYA 4OZYA 3SYJA 2UVFA 4XLEA 3SZEA 1O8LA 1KTWA 3EQOA 3RIQA 1WMRA 1KCDA 3UW0A 4W8SA 1IB4A 1RU4A 3KRGA 3VSUA 2NT6A 2J8KA 4V02C 3GRHA 3ZSCA 3PSZA 2BX6A 1TYXA 2NSTA 5AMVA 1LM1A 4OZZA 3NB2A 4XOTA 1AIRA 4YC5A 1O8IA 2XTXA 2PYGA 2X6YA 4YZAA 1QA2A 1QQ1A 1O8GA 4Z03A 4XN3A 4YEIA 2XC1A 1QJVA 4XNFA 4JRAC 4OJ5A 2G0YA 2VJJA 1GQ8A 2BM5A 2IOUG 3AK5A 1O8HA 1OFEA 2VFMA 1X0CA 3LMWA 2NSPA 2IQ7A 4MXNA 2XT2A 2QZAA 4XONA 4W8QA 2YUHA 5C1EA 4XKWA 1DBGA 5JMCB 2ODLA 1TYWA 3B90A 1O8DA 1LLWA 4XR6A 1KQ5A 2NTPA 3T9GA 4AVZA 1HG8A 2QXZA 4XLFA 1LLZA 3GQ7A 3JURA 4OPWA 4XN0A 3P4GA 5DNSA 4U4BA 1PE9A 3VSTA 1IA5A 2X3HA 4YZXA 4NK8A 4XLHA 2VFNA 4HWVA 2BM4A 2B0RA 2PYHA 4URRA
chains in the Genus database with same CATH topology
1VBLA 3SUCA 4U49A 2QY1A 2Z8GA 2QX3A 1PXZA 2VBMA 1IDJA 2EWEA 2NTQA 1NHCA 3GQAA 4XQFA 4MR0A 1RMGA 1O8FA 1PLUA 2INVA 4XORA 2NZMA 1QCXA 3GQ9A 4XKVA 4NK6A 4W8RA 2NT9A 1EE6A 4XOPA 4Z05A 1O8KA 4XM3A 1OGMX 1OFMA 1OOCA 1O8MA 4EW9A 1BN8A 2O1DA 4YZ0A 4YELA 2NTBA 3FY3A 4OJ6A 3B8YA 2X6XA 2VJIA 2PECA 2BSPA 1K5CA 2O0VA 1O8JA 4XMYA 1CZFA 1O8EA 4XLAA 3ZPPA 3VSVA 2X6WA 2O0WA 1KCCA 1BHEA 3WWGA 3EQNA 3VMVA 2VBKA 2VBEA 3B4NA 4PMHA 3VMWA 1O88A 4YZQA 4XL9A 4OJLA 1OFLA 1IDKA 1JRGA 2INUA 1OGOX 1DBOA 4YEJA 4C2LA 4OJOA 1JTAA 4OJPA 5C1CA 4W8TA 2UVEA 2O17A 3GQ8A 4XLCA 1H80A 1RWRA 4I84A 4Z06A 2X85A 4OZYA 2UVFA 4XLEA 1O8LA 1KTWA 3EQOA 1WMRA 1KCDA 3UW0A 4W8SA 1IB4A 1RU4A 3KRGA 3VSUA 2NT6A 3GRHA 3ZSCA 2NSTA 5AMVA 4OZZA 4XOTA 1AIRA 1O8IA 2PYGA 2X6YA 4YZAA 1O8GA 4Z03A 4XN3A 1QJVA 4XNFA 4OJ5A 2VJJA 1GQ8A 1O8HA 1X0CA 3LMWA 2NSPA 2IQ7A 4MXNA 4XONA 5C1EA 4W8QA 4XKWA 1DBGA 2ODLA 3B90A 1O8DA 4XR6A 2NTPA 3T9GA 4AVZA 1HG8A 2QXZA 4XLFA 3GQ7A 3JURA 4XN0A 4U4BA 1PE9A 3VSTA 1IA5A 2X3HA 4YZXA 4NK8A 4XLHA 4HWVA 2O04A 1XG2A 2PYHA 4URRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBL A;  3SUC A;  4U49 A;  2QY1 A;  2Z8G A;  2QX3 A;  1PXZ A;  2VBM A;  1IDJ A;  2EWE A;  2NTQ A;  1NHC A;  3GQA A;  4XQF A;  4MR0 A;  1RMG A;  1O8F A;  1PLU A;  2INV A;  4XOR A;  2NZM A;  1QCX A;  3GQ9 A;  4XKV A;  4NK6 A;  4W8R A;  2NT9 A;  1EE6 A;  4XOP A;  4Z05 A;  1O8K A;  4XM3 A;  1OGM X;  1OFM A;  1OOC A;  1O8M A;  4EW9 A;  1BN8 A;  2O1D A;  4YZ0 A;  4YEL A;  2NTB A;  3FY3 A;  4OJ6 A;  3B8Y A;  2X6X A;  2VJI A;  2PEC A;  2BSP A;  1K5C A;  2O0V A;  1O8J A;  4XMY A;  1CZF A;  1O8E A;  4XLA A;  3ZPP A;  3VSV A;  2X6W A;  2O0W A;  1KCC A;  1BHE A;  3WWG A;  3EQN A;  3VMV A;  2VBK A;  2VBE A;  3B4N A;  4PMH A;  3VMW A;  1O88 A;  4YZQ A;  4XL9 A;  4OJL A;  1OFL A;  1IDK A;  1JRG A;  2INU A;  1OGO X;  1DBO A;  4YEJ A;  4C2L A;  4OJO A;  1JTA A;  4OJP A;  5C1C A;  4W8T A;  2UVE A;  2O17 A;  3GQ8 A;  4XLC A;  1H80 A;  1RWR A;  4I84 A;  4Z06 A;  2X85 A;  4OZY A;  2UVF A;  4XLE A;  1O8L A;  1KTW A;  3EQO A;  1WMR A;  1KCD A;  3UW0 A;  4W8S A;  1IB4 A;  1RU4 A;  3KRG A;  3VSU A;  2NT6 A;  3GRH A;  3ZSC A;  2NST A;  5AMV A;  4OZZ A;  4XOT A;  1AIR A;  1O8I A;  2PYG A;  2X6Y A;  4YZA A;  1O8G A;  4Z03 A;  4XN3 A;  1QJV A;  4XNF A;  4OJ5 A;  2VJJ A;  1GQ8 A;  1O8H A;  1X0C A;  3LMW A;  2NSP A;  2IQ7 A;  4MXN A;  4XON A;  5C1E A;  4W8Q A;  4XKW A;  1DBG A;  2ODL A;  3B90 A;  1O8D A;  4XR6 A;  2NTP A;  3T9G A;  4AVZ A;  1HG8 A;  2QXZ A;  4XLF A;  3GQ7 A;  3JUR A;  4XN0 A;  4U4B A;  1PE9 A;  3VST A;  1IA5 A;  2X3H A;  4YZX A;  4NK8 A;  4XLH A;  4HWV A;  2O04 A;  1XG2 A;  2PYH A;  4URR A; 
#chains in the Genus database with same CATH topology
 2VFO A;  1VBL A;  3SUC A;  2O6W A;  4U49 A;  2QY1 A;  1EZG A;  2Z8G A;  1QRB A;  3TH0 A;  2QX3 A;  3DU1 X;  3N90 A;  1PXZ A;  3H09 A;  2VBM A;  1IDJ A;  2J8I A;  1K4Z A;  2EWE A;  2NTQ A;  1NHC A;  3GQA A;  1QRC A;  3LJY A;  4XQF A;  2W7Z A;  4MR0 A;  1RMG A;  1O8F A;  1PLU A;  2INV A;  2VFQ A;  3NAW A;  1EA0 A;  4XOR A;  2NZM A;  1QCX A;  3GQ9 A;  4XKV A;  3ML3 A;  4NK6 A;  2NT9 A;  4W8R A;  5JLV C;  1EE6 A;  4XOP A;  4Z05 A;  1O8K A;  4XM3 A;  1OGM X;  4YDT A;  1OFM A;  1OOC A;  1O8M A;  4EW9 A;  1BN8 A;  2O1D A;  2QYU A;  2XT4 A;  4YEL A;  4YZ0 A;  2V5I A;  2XTW A;  1CLW A;  2NTB A;  3FY3 A;  4OJ6 A;  3B8Y A;  2X6X A;  2VJI A;  2BM7 A;  4KH3 A;  3LYC A;  3PSS A;  2PEC A;  2BSP A;  1OFD A;  1K5C A;  2O0V A;  1TSP A;  1O8J A;  4XMY A;  1CZF A;  1O8E A;  4OM9 A;  4XLA A;  3ZPP A;  3VSV A;  2X6W A;  1QA3 A;  4YCQ A;  3BH6 B;  2O0W A;  1KCC A;  1BHE A;  3WWG A;  3EQN A;  1HF2 A;  1TYV A;  2VBK A;  2VBE A;  3N6Z A;  3B4N A;  3PET A;  3VMV A;  4PMH A;  3JX8 A;  3VMW A;  1O88 A;  4YZQ A;  4XL9 A;  4OJL A;  1WXR A;  1OFL A;  1JRG A;  1IDK A;  2INU A;  1OGO X;  3SY2 A;  1DBO A;  4YEJ A;  4C2L A;  4OJO A;  1JTA A;  1XG2 A;  2BM6 A;  4OJP A;  2VFP A;  2F3L A;  5C1C A;  4W8T A;  2UVE A;  3SQV A;  2O17 A;  3GQ8 A;  4XLC A;  2O04 A;  1H80 A;  1DAB A;  1TYU A;  1RWR A;  1QA1 A;  3BH7 B;  1L1I A;  4YFO A;  1K8F A;  4I84 A;  4Z06 A;  2X85 A;  2XTY A;  4OZY A;  3SYJ A;  2UVF A;  4XLE A;  3SZE A;  1O8L A;  1KTW A;  3EQO A;  3RIQ A;  1WMR A;  1KCD A;  3UW0 A;  4W8S A;  1IB4 A;  1RU4 A;  3KRG A;  3VSU A;  2NT6 A;  2J8K A;  4V02 C;  3GRH A;  3ZSC A;  3PSZ A;  2BX6 A;  1TYX A;  2NST A;  5AMV A;  1LM1 A;  4OZZ A;  3NB2 A;  4XOT A;  1AIR A;  4YC5 A;  1O8I A;  2XTX A;  2PYG A;  2X6Y A;  4YZA A;  1QA2 A;  1QQ1 A;  1O8G A;  4Z03 A;  4XN3 A;  4YEI A;  2XC1 A;  1QJV A;  4XNF A;  4JRA C;  4OJ5 A;  2G0Y A;  2VJJ A;  1GQ8 A;  2BM5 A;  2IOU G;  3AK5 A;  1O8H A;  1OFE A;  2VFM A;  1X0C A;  3LMW A;  2NSP A;  2IQ7 A;  4MXN A;  2XT2 A;  2QZA A;  4XON A;  4W8Q A;  2YUH A;  5C1E A;  4XKW A;  1DBG A;  5JMC B;  2ODL A;  1TYW A;  3B90 A;  1O8D A;  1LLW A;  4XR6 A;  1KQ5 A;  2NTP A;  3T9G A;  4AVZ A;  1HG8 A;  2QXZ A;  4XLF A;  1LLZ A;  3GQ7 A;  3JUR A;  4OPW A;  4XN0 A;  3P4G A;  5DNS A;  4U4B A;  1PE9 A;  3VST A;  1IA5 A;  2X3H A;  4YZX A;  4NK8 A;  4XLH A;  2VFN A;  4HWV A;  2BM4 A;  2B0R A;  2PYH A;  4URR A; 
#chains in the Genus database with same CATH homology
 1VBL A;  3SUC A;  4U49 A;  2QY1 A;  2Z8G A;  2QX3 A;  1PXZ A;  2VBM A;  1IDJ A;  2EWE A;  2NTQ A;  1NHC A;  3GQA A;  4XQF A;  4MR0 A;  1RMG A;  1O8F A;  1PLU A;  2INV A;  4XOR A;  2NZM A;  1QCX A;  3GQ9 A;  4XKV A;  4NK6 A;  4W8R A;  2NT9 A;  1EE6 A;  4XOP A;  4Z05 A;  1O8K A;  4XM3 A;  1OGM X;  1OFM A;  1OOC A;  1O8M A;  4EW9 A;  1BN8 A;  2O1D A;  4YZ0 A;  4YEL A;  2NTB A;  3FY3 A;  4OJ6 A;  3B8Y A;  2X6X A;  2VJI A;  2PEC A;  2BSP A;  1K5C A;  2O0V A;  1O8J A;  4XMY A;  1CZF A;  1O8E A;  4XLA A;  3ZPP A;  3VSV A;  2X6W A;  2O0W A;  1KCC A;  1BHE A;  3WWG A;  3EQN A;  3VMV A;  2VBK A;  2VBE A;  3B4N A;  4PMH A;  3VMW A;  1O88 A;  4YZQ A;  4XL9 A;  4OJL A;  1OFL A;  1IDK A;  1JRG A;  2INU A;  1OGO X;  1DBO A;  4YEJ A;  4C2L A;  4OJO A;  1JTA A;  4OJP A;  5C1C A;  4W8T A;  2UVE A;  2O17 A;  3GQ8 A;  4XLC A;  1H80 A;  1RWR A;  4I84 A;  4Z06 A;  2X85 A;  4OZY A;  2UVF A;  4XLE A;  1O8L A;  1KTW A;  3EQO A;  1WMR A;  1KCD A;  3UW0 A;  4W8S A;  1IB4 A;  1RU4 A;  3KRG A;  3VSU A;  2NT6 A;  3GRH A;  3ZSC A;  2NST A;  5AMV A;  4OZZ A;  4XOT A;  1AIR A;  1O8I A;  2PYG A;  2X6Y A;  4YZA A;  1O8G A;  4Z03 A;  4XN3 A;  1QJV A;  4XNF A;  4OJ5 A;  2VJJ A;  1GQ8 A;  1O8H A;  1X0C A;  3LMW A;  2NSP A;  2IQ7 A;  4MXN A;  4XON A;  5C1E A;  4W8Q A;  4XKW A;  1DBG A;  2ODL A;  3B90 A;  1O8D A;  4XR6 A;  2NTP A;  3T9G A;  4AVZ A;  1HG8 A;  2QXZ A;  4XLF A;  3GQ7 A;  3JUR A;  4XN0 A;  4U4B A;  1PE9 A;  3VST A;  1IA5 A;  2X3H A;  4YZX A;  4NK8 A;  4XLH A;  4HWV A;  2O04 A;  1XG2 A;  2PYH A;  4URR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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