4C2LA

Crystal structure of endo-xylogalacturonan hydrolase from aspergillus tubingensis
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
372
structure length
372
Chain Sequence
AVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGSTYYLNSVLDLGSCSDCDIQVEGLLKFASDTDYWSGRTAMISVSNVDGLKLRSLTGSGVIDGNGQDAWDLFASDSSYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGGATNVVFSNLKMDANSKSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPSSNYVTVDTISCTGSHGISVGSLGKSSDDSVKNIYVTGATMINSTKAAGIKTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSSFSGTTSDKYDPVVANLDCGADGTCGISISGFDVKAPSGKSEVLCANTPSDLGVTCTSGASG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ENDO-XYLOGALACTURONAN HYDROLASE A
publication title Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.
pubmed doi rcsb
source organism Aspergillus tubingensis
molecule tags Hydrolase
total genus 149
structure length 372
sequence length 372
ec nomenclature ec 3.2.1.-:
pdb deposition date 2013-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4c2lA00
1GQ8A 4Z06A 1HG8A 1PE9A 1O8GA 2O0WA 3ZSCA 4MXNA 4XORA 4Z03A 1O8DA 2QY1A 3GRHA 3LMWA 1DBGA 2NTQA 2UVEA 4XLFA 4YZAA 4XQFA 4XN0A 4XM3A 1BN8A 1IDJA 4XLEA 1QCXA 4U49A 1DBOA 1KTWA 3GQ7A 4XOPA 3VSTA 1AIRA 2Z8GA 2VBKA 1K5CA 4XLHA 2NTBA 4XN3A 2NSTA 2IQ7A 2EWEA 4XKVA 2X85A 4AVZA 3EQNA 5AMVA 4W8QA 4URRA 2PYHA 3T9GA 2NSPA 1IA5A 4YZ0A 2O0VA 2X3HA 1JTAA 4YELA 1BHEA 5C1CA 4OZZA 1WMRA 2BSPA 4PMHA 1X0CA 4OJOA 1OFLA 4XONA 1O8IA 2PECA 2QX3A 2VJIA 1QJVA 2NZMA 1OGOX 1O8EA 2NT9A 4XMYA 1JRGA 1O8LA 2QXZA 1CZFA 1IDKA 3B4NA 2NT6A 1PXZA 2X6WA 2ODLA 1RWRA 4W8SA 4XL9A 4XNFA 4HWVA 3B90A 3ZPPA 1RMGA 3VSUA 4Z05A 1O8KA 3VMVA 3JURA 1KCCA 4OZYA 3GQ8A 4MR0A 4XLAA 3UW0A 1O8HA 2VBMA 4NK6A 1H80A 2PYGA 4OJLA 3WWGA 4XOTA 5C1EA 4EW9A 3EQOA 3FY3A 1OOCA 4W8RA 4YZQA 2VJJA 4YZXA 1O8JA 2VBEA 4XLCA 2X6YA 1IB4A 4OJ6A 4YEJA 3GQAA 4OJPA 3VMWA 3VSVA 1NHCA 1OGMX 2INVA 2UVFA 2X6XA 1VBLA 2INUA 1KCDA 3B8YA 2NTPA 3KRGA 2O04A 1O8FA 1O88A 4C2LA 3SUCA 4XR6A 1O8MA 1PLUA 1EE6A 3GQ9A 1OFMA 4NK8A 4W8TA 1RU4A 2O1DA 4U4BA 2O17A 4XKWA 4OJ5A 1XG2A 4I84A
chains in the Genus database with same CATH superfamily
1GQ8A 2VFPA 2VFNA 4Z06A 1HG8A 1PE9A 3TH0A 5JMCB 1O8GA 2O0WA 3ZSCA 4MXNA 3PSZA 4XORA 4YDTA 1O8DA 2QY1A 3GRHA 3LMWA 1DBGA 2NTQA 2UVEA 4KH3A 4XLFA 4Z03A 4YZAA 4XQFA 4XN0A 4XM3A 1BN8A 1QA3A 1IDJA 4XLEA 1QCXA 4U49A 1DBOA 3VMVA 1EA0A 4YC5A 1KTWA 3GQ7A 2QYUA 4XOPA 3VSTA 1AIRA 2Z8GA 2VBKA 3ML3A 1K5CA 4XLHA 2NTBA 4XN3A 2NSTA 2IQ7A 2EWEA 4XKVA 1QQ1A 2X85A 4AVZA 1QRBA 3EQNA 5AMVA 2XTXA 4W8QA 4URRA 2PYHA 3T9GA 2NSPA 1IA5A 4YZ0A 2O0VA 4YCQA 2X3HA 1JTAA 1TYVA 2BM7A 3LYCA 1QRCA 1BHEA 4YELA 5C1CA 4OZZA 1WMRA 2BSPA 1OFDA 2IOUG 4PMHA 1EZGA 1X0CA 4OJOA 2XTWA 5DNSA 1OFLA 4XONA 1O8IA 2PECA 2QX3A 2VJIA 1QJVA 2NZMA 5JLVC 1OGOX 1O8EA 4V02C 2NT9A 3H09A 4XMYA 3PETA 1JRGA 1O8LA 2QXZA 1QA1A 1CZFA 2BM6A 2J8KA 1IDKA 3B4NA 2NT6A 1PXZA 4JRAC 2X6WA 2XT4A 1K4ZA 2ODLA 1RWRA 4W8SA 4XL9A 2VFMA 4XNFA 2V5IA 4HWVA 3B90A 1LLZA 3ZPPA 1QA2A 1RMGA 1TSPA 2VFQA 3BH7B 3VSUA 2W7ZA 1O8KA 2VFOA 2YUHA 3JURA 1TYUA 3LJYA 3N90A 4OZYA 4Z05A 1KCCA 3GQ8A 4MR0A 2B0RA 3SQVA 3BH6B 4XLAA 3RIQA 1O8HA 2XC1A 2VBMA 4NK6A 3UW0A 1K8FA 1H80A 2PYGA 4OJLA 3WWGA 2O6WA 4XOTA 5C1EA 2QZAA 4EW9A 3EQOA 3FY3A 1OOCA 4W8RA 1WXRA 4YZQA 2VJJA 4YZXA 1O8JA 2VBEA 4XLCA 2X6YA 1IB4A 3SYJA 4OJ6A 4YEJA 3GQAA 1KQ5A 1LLWA 4OM9A 3AK5A 1CLWA 4OPWA 4OJPA 3VMWA 3VSVA 2G0YA 1NHCA 1OGMX 4YFOA 2INVA 2UVFA 2X6XA 1DABA 1VBLA 2BM5A 2INUA 1TYWA 3B8YA 1KCDA 2NTPA 3NB2A 3SZEA 1LM1A 3KRGA 1HF2A 2O04A 2XTYA 2J8IA 1O8FA 2F3LA 4YEIA 1O88A 3DU1X 4C2LA 3JX8A 2BX6A 3N6ZA 3NAWA 4XR6A 1O8MA 2BM4A 1PLUA 3SUCA 1L1IA 1TYXA 1EE6A 1OFEA 3GQ9A 1OFMA 4NK8A 3SY2A 3P4GA 4W8TA 1RU4A 2O1DA 2XT2A 2O17A 4U4BA 4XKWA 3PSSA 4OJ5A 1XG2A 4I84A
chains in the Genus database with same CATH topology
1GQ8A 4Z06A 1HG8A 1PE9A 1O8GA 2O0WA 3ZSCA 4MXNA 4XORA 4Z03A 1O8DA 2QY1A 3GRHA 3LMWA 1DBGA 2NTQA 2UVEA 4XLFA 4YZAA 4XQFA 4XN0A 4XM3A 1BN8A 1IDJA 4XLEA 1QCXA 4U49A 1DBOA 1KTWA 3GQ7A 4XOPA 3VSTA 1AIRA 2Z8GA 2VBKA 1K5CA 4XLHA 2NTBA 4XN3A 2NSTA 2IQ7A 2EWEA 4XKVA 2X85A 4AVZA 3EQNA 5AMVA 4W8QA 4URRA 2PYHA 3T9GA 2NSPA 1IA5A 4YZ0A 2O0VA 2X3HA 1JTAA 4YELA 1BHEA 5C1CA 4OZZA 1WMRA 2BSPA 4PMHA 1X0CA 4OJOA 1OFLA 4XONA 1O8IA 2PECA 2QX3A 2VJIA 1QJVA 2NZMA 1OGOX 1O8EA 2NT9A 4XMYA 1JRGA 1O8LA 2QXZA 1CZFA 1IDKA 3B4NA 2NT6A 1PXZA 2X6WA 2ODLA 1RWRA 4W8SA 4XL9A 4XNFA 4HWVA 3B90A 3ZPPA 1RMGA 3VSUA 4Z05A 1O8KA 3VMVA 3JURA 1KCCA 4OZYA 3GQ8A 4MR0A 4XLAA 3UW0A 1O8HA 2VBMA 4NK6A 1H80A 2PYGA 4OJLA 3WWGA 4XOTA 5C1EA 4EW9A 3EQOA 3FY3A 1OOCA 4W8RA 4YZQA 2VJJA 4YZXA 1O8JA 2VBEA 4XLCA 2X6YA 1IB4A 4OJ6A 4YEJA 3GQAA 4OJPA 3VMWA 3VSVA 1NHCA 1OGMX 2INVA 2UVFA 2X6XA 1VBLA 2INUA 1KCDA 3B8YA 2NTPA 3KRGA 2O04A 1O8FA 1O88A 4C2LA 3SUCA 4XR6A 1O8MA 1PLUA 1EE6A 3GQ9A 1OFMA 4NK8A 4W8TA 1RU4A 2O1DA 4U4BA 2O17A 4XKWA 4OJ5A 1XG2A 4I84A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GQ8 A;  4Z06 A;  1HG8 A;  1PE9 A;  1O8G A;  2O0W A;  3ZSC A;  4MXN A;  4XOR A;  4Z03 A;  1O8D A;  2QY1 A;  3GRH A;  3LMW A;  1DBG A;  2NTQ A;  2UVE A;  4XLF A;  4YZA A;  4XQF A;  4XN0 A;  4XM3 A;  1BN8 A;  1IDJ A;  4XLE A;  1QCX A;  4U49 A;  1DBO A;  1KTW A;  3GQ7 A;  4XOP A;  3VST A;  1AIR A;  2Z8G A;  2VBK A;  1K5C A;  4XLH A;  2NTB A;  4XN3 A;  2NST A;  2IQ7 A;  2EWE A;  4XKV A;  2X85 A;  4AVZ A;  3EQN A;  5AMV A;  4W8Q A;  4URR A;  2PYH A;  3T9G A;  2NSP A;  1IA5 A;  4YZ0 A;  2O0V A;  2X3H A;  1JTA A;  4YEL A;  1BHE A;  5C1C A;  4OZZ A;  1WMR A;  2BSP A;  4PMH A;  1X0C A;  4OJO A;  1OFL A;  4XON A;  1O8I A;  2PEC A;  2QX3 A;  2VJI A;  1QJV A;  2NZM A;  1OGO X;  1O8E A;  2NT9 A;  4XMY A;  1JRG A;  1O8L A;  2QXZ A;  1CZF A;  1IDK A;  3B4N A;  2NT6 A;  1PXZ A;  2X6W A;  2ODL A;  1RWR A;  4W8S A;  4XL9 A;  4XNF A;  4HWV A;  3B90 A;  3ZPP A;  1RMG A;  3VSU A;  4Z05 A;  1O8K A;  3VMV A;  3JUR A;  1KCC A;  4OZY A;  3GQ8 A;  4MR0 A;  4XLA A;  3UW0 A;  1O8H A;  2VBM A;  4NK6 A;  1H80 A;  2PYG A;  4OJL A;  3WWG A;  4XOT A;  5C1E A;  4EW9 A;  3EQO A;  3FY3 A;  1OOC A;  4W8R A;  4YZQ A;  2VJJ A;  4YZX A;  1O8J A;  2VBE A;  4XLC A;  2X6Y A;  1IB4 A;  4OJ6 A;  4YEJ A;  3GQA A;  4OJP A;  3VMW A;  3VSV A;  1NHC A;  1OGM X;  2INV A;  2UVF A;  2X6X A;  1VBL A;  2INU A;  1KCD A;  3B8Y A;  2NTP A;  3KRG A;  2O04 A;  1O8F A;  1O88 A;  4C2L A;  3SUC A;  4XR6 A;  1O8M A;  1PLU A;  1EE6 A;  3GQ9 A;  1OFM A;  4NK8 A;  4W8T A;  1RU4 A;  2O1D A;  4U4B A;  2O17 A;  4XKW A;  4OJ5 A;  1XG2 A;  4I84 A; 
#chains in the Genus database with same CATH topology
 1GQ8 A;  2VFP A;  2VFN A;  4Z06 A;  1HG8 A;  1PE9 A;  3TH0 A;  5JMC B;  1O8G A;  2O0W A;  3ZSC A;  4MXN A;  3PSZ A;  4XOR A;  4YDT A;  1O8D A;  2QY1 A;  3GRH A;  3LMW A;  1DBG A;  2NTQ A;  2UVE A;  4KH3 A;  4XLF A;  4Z03 A;  4YZA A;  4XQF A;  4XN0 A;  4XM3 A;  1BN8 A;  1QA3 A;  1IDJ A;  4XLE A;  1QCX A;  4U49 A;  1DBO A;  3VMV A;  1EA0 A;  4YC5 A;  1KTW A;  3GQ7 A;  2QYU A;  4XOP A;  3VST A;  1AIR A;  2Z8G A;  2VBK A;  3ML3 A;  1K5C A;  4XLH A;  2NTB A;  4XN3 A;  2NST A;  2IQ7 A;  2EWE A;  4XKV A;  1QQ1 A;  2X85 A;  4AVZ A;  1QRB A;  3EQN A;  5AMV A;  2XTX A;  4W8Q A;  4URR A;  2PYH A;  3T9G A;  2NSP A;  1IA5 A;  4YZ0 A;  2O0V A;  4YCQ A;  2X3H A;  1JTA A;  1TYV A;  2BM7 A;  3LYC A;  1QRC A;  1BHE A;  4YEL A;  5C1C A;  4OZZ A;  1WMR A;  2BSP A;  1OFD A;  2IOU G;  4PMH A;  1EZG A;  1X0C A;  4OJO A;  2XTW A;  5DNS A;  1OFL A;  4XON A;  1O8I A;  2PEC A;  2QX3 A;  2VJI A;  1QJV A;  2NZM A;  5JLV C;  1OGO X;  1O8E A;  4V02 C;  2NT9 A;  3H09 A;  4XMY A;  3PET A;  1JRG A;  1O8L A;  2QXZ A;  1QA1 A;  1CZF A;  2BM6 A;  2J8K A;  1IDK A;  3B4N A;  2NT6 A;  1PXZ A;  4JRA C;  2X6W A;  2XT4 A;  1K4Z A;  2ODL A;  1RWR A;  4W8S A;  4XL9 A;  2VFM A;  4XNF A;  2V5I A;  4HWV A;  3B90 A;  1LLZ A;  3ZPP A;  1QA2 A;  1RMG A;  1TSP A;  2VFQ A;  3BH7 B;  3VSU A;  2W7Z A;  1O8K A;  2VFO A;  2YUH A;  3JUR A;  1TYU A;  3LJY A;  3N90 A;  4OZY A;  4Z05 A;  1KCC A;  3GQ8 A;  4MR0 A;  2B0R A;  3SQV A;  3BH6 B;  4XLA A;  3RIQ A;  1O8H A;  2XC1 A;  2VBM A;  4NK6 A;  3UW0 A;  1K8F A;  1H80 A;  2PYG A;  4OJL A;  3WWG A;  2O6W A;  4XOT A;  5C1E A;  2QZA A;  4EW9 A;  3EQO A;  3FY3 A;  1OOC A;  4W8R A;  1WXR A;  4YZQ A;  2VJJ A;  4YZX A;  1O8J A;  2VBE A;  4XLC A;  2X6Y A;  1IB4 A;  3SYJ A;  4OJ6 A;  4YEJ A;  3GQA A;  1KQ5 A;  1LLW A;  4OM9 A;  3AK5 A;  1CLW A;  4OPW A;  4OJP A;  3VMW A;  3VSV A;  2G0Y A;  1NHC A;  1OGM X;  4YFO A;  2INV A;  2UVF A;  2X6X A;  1DAB A;  1VBL A;  2BM5 A;  2INU A;  1TYW A;  3B8Y A;  1KCD A;  2NTP A;  3NB2 A;  3SZE A;  1LM1 A;  3KRG A;  1HF2 A;  2O04 A;  2XTY A;  2J8I A;  1O8F A;  2F3L A;  4YEI A;  1O88 A;  3DU1 X;  4C2L A;  3JX8 A;  2BX6 A;  3N6Z A;  3NAW A;  4XR6 A;  1O8M A;  2BM4 A;  1PLU A;  3SUC A;  1L1I A;  1TYX A;  1EE6 A;  1OFE A;  3GQ9 A;  1OFM A;  4NK8 A;  3SY2 A;  3P4G A;  4W8T A;  1RU4 A;  2O1D A;  2XT2 A;  2O17 A;  4U4B A;  4XKW A;  3PSS A;  4OJ5 A;  1XG2 A;  4I84 A; 
#chains in the Genus database with same CATH homology
 1GQ8 A;  4Z06 A;  1HG8 A;  1PE9 A;  1O8G A;  2O0W A;  3ZSC A;  4MXN A;  4XOR A;  4Z03 A;  1O8D A;  2QY1 A;  3GRH A;  3LMW A;  1DBG A;  2NTQ A;  2UVE A;  4XLF A;  4YZA A;  4XQF A;  4XN0 A;  4XM3 A;  1BN8 A;  1IDJ A;  4XLE A;  1QCX A;  4U49 A;  1DBO A;  1KTW A;  3GQ7 A;  4XOP A;  3VST A;  1AIR A;  2Z8G A;  2VBK A;  1K5C A;  4XLH A;  2NTB A;  4XN3 A;  2NST A;  2IQ7 A;  2EWE A;  4XKV A;  2X85 A;  4AVZ A;  3EQN A;  5AMV A;  4W8Q A;  4URR A;  2PYH A;  3T9G A;  2NSP A;  1IA5 A;  4YZ0 A;  2O0V A;  2X3H A;  1JTA A;  4YEL A;  1BHE A;  5C1C A;  4OZZ A;  1WMR A;  2BSP A;  4PMH A;  1X0C A;  4OJO A;  1OFL A;  4XON A;  1O8I A;  2PEC A;  2QX3 A;  2VJI A;  1QJV A;  2NZM A;  1OGO X;  1O8E A;  2NT9 A;  4XMY A;  1JRG A;  1O8L A;  2QXZ A;  1CZF A;  1IDK A;  3B4N A;  2NT6 A;  1PXZ A;  2X6W A;  2ODL A;  1RWR A;  4W8S A;  4XL9 A;  4XNF A;  4HWV A;  3B90 A;  3ZPP A;  1RMG A;  3VSU A;  4Z05 A;  1O8K A;  3VMV A;  3JUR A;  1KCC A;  4OZY A;  3GQ8 A;  4MR0 A;  4XLA A;  3UW0 A;  1O8H A;  2VBM A;  4NK6 A;  1H80 A;  2PYG A;  4OJL A;  3WWG A;  4XOT A;  5C1E A;  4EW9 A;  3EQO A;  3FY3 A;  1OOC A;  4W8R A;  4YZQ A;  2VJJ A;  4YZX A;  1O8J A;  2VBE A;  4XLC A;  2X6Y A;  1IB4 A;  4OJ6 A;  4YEJ A;  3GQA A;  4OJP A;  3VMW A;  3VSV A;  1NHC A;  1OGM X;  2INV A;  2UVF A;  2X6X A;  1VBL A;  2INU A;  1KCD A;  3B8Y A;  2NTP A;  3KRG A;  2O04 A;  1O8F A;  1O88 A;  4C2L A;  3SUC A;  4XR6 A;  1O8M A;  1PLU A;  1EE6 A;  3GQ9 A;  1OFM A;  4NK8 A;  4W8T A;  1RU4 A;  2O1D A;  4U4B A;  2O17 A;  4XKW A;  4OJ5 A;  1XG2 A;  4I84 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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