4C2LA

Crystal structure of endo-xylogalacturonan hydrolase from aspergillus tubingensis
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
372
structure length
372
Chain Sequence
AVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGSTYYLNSVLDLGSCSDCDIQVEGLLKFASDTDYWSGRTAMISVSNVDGLKLRSLTGSGVIDGNGQDAWDLFASDSSYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGGATNVVFSNLKMDANSKSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPSSNYVTVDTISCTGSHGISVGSLGKSSDDSVKNIYVTGATMINSTKAAGIKTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSSFSGTTSDKYDPVVANLDCGADGTCGISISGFDVKAPSGKSEVLCANTPSDLGVTCTSGASG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ENDO-XYLOGALACTURONAN HYDROLASE A
publication title Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.
pubmed doi rcsb
source organism Aspergillus tubingensis
total genus 149
structure length 372
sequence length 372
ec nomenclature ec 3.2.1.-:
pdb deposition date 2013-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4c2lA00
1BN8A 2NTQA 3GRHA 4W8TA 3VMWA 2O04A 4U4BA 1RMGA 2VJJA 3KRGA 4XKVA 4AVZA 3B8YA 2O1DA 2IQ7A 4XKWA 4XM3A 2UVEA 2PYGA 4URRA 1KCDA 4PMHA 5C1CA 2NZMA 1HG8A 3VSUA 4YEJA 4U49A 4XONA 1O8FA 2QX3A 4XLHA 1RWRA 4XLAA 3WWGA 2PYHA 1JRGA 3EQOA 1EE6A 1RU4A 2ODLA 4C2LA 3VSTA 1OGOX 4Z03A 4W8QA 4I84A 1JTAA 1OFMA 3GQAA 4XLFA 4XLCA 1O8GA 1AIRA 2X6XA 4XN0A 3VMVA 1IA5A 2VBEA 2NT9A 4XLEA 1OFLA 1KCCA 1CZFA 4NK6A 3SUCA 2UVFA 4XNFA 1X0CA 3GQ7A 4Z05A 2X6YA 1O8LA 3JURA 4XQFA 1IDKA 1IDJA 4HWVA 1QCXA 3GQ9A 1O8EA 4MR0A 4XOPA 4OJOA 2NTBA 5C1EA 4YZXA 2O17A 4OJLA 2X3HA 4W8RA 2NSTA 2INVA 2NSPA 1IB4A 2QXZA 4YZ0A 3LMWA 1O8MA 1XG2A 4W8SA 2X85A 4XMYA 4OJ6A 1K5CA 1OGMX 1DBGA 2X6WA 2VBKA 4YZQA 2PECA 1OOCA 1O8HA 1NHCA 4OZZA 1PLUA 4Z06A 4OJPA 4XORA 4NK8A 2QY1A 3B90A 3UW0A 1H80A 1O8DA 4YZAA 1O8JA 1KTWA 3T9GA 3FY3A 4XL9A 5AMVA 1O8KA 4EW9A 4XR6A 2O0WA 1O88A 4XOTA 4XN3A 1O8IA 2BSPA 2VJIA 3EQNA 3GQ8A 4OJ5A 2NTPA 3ZSCA 3ZPPA 1QJVA 2INUA 4OZYA 4MXNA 2Z8GA 1VBLA 1PXZA 1WMRA 2VBMA 3B4NA 2EWEA 3VSVA 1DBOA 1BHEA 2NT6A 1PE9A 2O0VA 4YELA 1GQ8A
chains in the Genus database with same CATH superfamily
4YDTA 3RIQA 1QA2A 1BN8A 3BH7B 2VFNA 3PETA 2NTQA 1QA1A 2VFQA 3DU1X 2F3LA 3GRHA 2J8KA 4W8TA 3VMWA 2O04A 2BM4A 4U4BA 1RMGA 2VJJA 3KRGA 3ML3A 1LM1A 4XKVA 4AVZA 3B8YA 2O1DA 2IQ7A 4XKWA 4XM3A 3N90A 1DABA 2UVEA 2PYGA 2BM7A 3H09A 1QQ1A 4URRA 3TH0A 1KCDA 4PMHA 5C1CA 2XTWA 3SZEA 3P4GA 2NZMA 4YEIA 1HG8A 2G0YA 2BM6A 2XT2A 4YEJA 3SQVA 3VSUA 1QA3A 4U49A 4XONA 1O8FA 2QX3A 4XLHA 2VFMA 1RWRA 4XLAA 2VFPA 4OPWA 3WWGA 2PYHA 1JRGA 2B0RA 3EQOA 1EE6A 1RU4A 1WXRA 2XT4A 2ODLA 4C2LA 3VSTA 1OGOX 4Z03A 4W8QA 5DNSA 4I84A 1JTAA 1OFMA 2BM5A 3GQAA 3LYCA 4XLFA 4XLCA 1O8GA 1AIRA 2X6XA 4XN0A 3VMVA 1IA5A 2VBEA 2NT9A 4V02C 4XLEA 1OFLA 1LLWA 2QZAA 1OFEA 2XC1A 1KCCA 1CZFA 4NK6A 3SUCA 2UVFA 4XNFA 1X0CA 3GQ7A 4Z05A 2X6YA 1O8LA 3JURA 4XQFA 1IDKA 1IDJA 4HWVA 1K8FA 1CLWA 1QCXA 1HF2A 3GQ9A 1O8EA 4MR0A 4XOPA 4OJOA 2NTBA 1LLZA 5C1EA 3JX8A 4YZXA 2O17A 4OJLA 2VFOA 1K4ZA 2X3HA 2XTYA 3NAWA 4OM9A 4W8RA 2NSTA 1KQ5A 1QRCA 3AK5A 2INVA 2NSPA 1QRBA 1IB4A 2QXZA 4YZ0A 3LMWA 2V5IA 1O8MA 1XG2A 1TYWA 4W8SA 2X85A 4XMYA 5JLVC 4OJ6A 2QYUA 3NB2A 5JMCB 1TYXA 1K5CA 1OGMX 4KH3A 3PSSA 1DBGA 2X6WA 3SYJA 2VBKA 4YZQA 2PECA 3N6ZA 1OOCA 1O8HA 1TYUA 2O6WA 3BH6B 1NHCA 4OZZA 1PLUA 4Z06A 4OJPA 4YCQA 2YUHA 4JRAC 4XORA 1L1IA 4NK8A 2J8IA 2QY1A 3LJYA 1EA0A 3B90A 3UW0A 1OFDA 1O8DA 1H80A 4YZAA 1O8JA 1KTWA 3T9GA 3FY3A 3PSZA 4XL9A 5AMVA 1O8KA 4EW9A 4XR6A 2O0WA 1O88A 4XOTA 4XN3A 1O8IA 2BSPA 2VJIA 3EQNA 3GQ8A 4OJ5A 4YC5A 4YFOA 2NTPA 1EZGA 3SY2A 1TSPA 3ZSCA 3ZPPA 1QJVA 2INUA 4OZYA 4MXNA 2BX6A 2Z8GA 1VBLA 2W7ZA 1PXZA 1WMRA 2VBMA 3B4NA 1TYVA 2IOUG 2EWEA 3VSVA 1DBOA 1BHEA 2NT6A 1PE9A 2XTXA 2O0VA 4YELA 1GQ8A
chains in the Genus database with same CATH topology
1BN8A 2NTQA 3GRHA 4W8TA 3VMWA 2O04A 4U4BA 1RMGA 2VJJA 3KRGA 4XKVA 4AVZA 3B8YA 2O1DA 2IQ7A 4XKWA 4XM3A 2UVEA 2PYGA 4URRA 1KCDA 4PMHA 5C1CA 2NZMA 1HG8A 3VSUA 4YEJA 4U49A 4XONA 1O8FA 2QX3A 4XLHA 1RWRA 4XLAA 3WWGA 2PYHA 1JRGA 3EQOA 1EE6A 1RU4A 2ODLA 4C2LA 3VSTA 1OGOX 4Z03A 4W8QA 4I84A 1JTAA 1OFMA 3GQAA 4XLFA 4XLCA 1O8GA 1AIRA 2X6XA 4XN0A 3VMVA 1IA5A 2VBEA 2NT9A 4XLEA 1OFLA 1KCCA 1CZFA 4NK6A 3SUCA 2UVFA 4XNFA 1X0CA 3GQ7A 4Z05A 2X6YA 1O8LA 3JURA 4XQFA 1IDKA 1IDJA 4HWVA 1QCXA 3GQ9A 1O8EA 4MR0A 4XOPA 4OJOA 2NTBA 5C1EA 4YZXA 2O17A 4OJLA 2X3HA 4W8RA 2NSTA 2INVA 2NSPA 1IB4A 2QXZA 4YZ0A 3LMWA 1O8MA 1XG2A 4W8SA 2X85A 4XMYA 4OJ6A 1K5CA 1OGMX 1DBGA 2X6WA 2VBKA 4YZQA 2PECA 1OOCA 1O8HA 1NHCA 4OZZA 1PLUA 4Z06A 4OJPA 4XORA 4NK8A 2QY1A 3B90A 3UW0A 1H80A 1O8DA 4YZAA 1O8JA 1KTWA 3T9GA 3FY3A 4XL9A 5AMVA 1O8KA 4EW9A 4XR6A 2O0WA 1O88A 4XOTA 4XN3A 1O8IA 2BSPA 2VJIA 3EQNA 3GQ8A 4OJ5A 2NTPA 3ZSCA 3ZPPA 1QJVA 2INUA 4OZYA 4MXNA 2Z8GA 1VBLA 1PXZA 1WMRA 2VBMA 3B4NA 2EWEA 3VSVA 1DBOA 1BHEA 2NT6A 1PE9A 2O0VA 4YELA 1GQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BN8 A;  2NTQ A;  3GRH A;  4W8T A;  3VMW A;  2O04 A;  4U4B A;  1RMG A;  2VJJ A;  3KRG A;  4XKV A;  4AVZ A;  3B8Y A;  2O1D A;  2IQ7 A;  4XKW A;  4XM3 A;  2UVE A;  2PYG A;  4URR A;  1KCD A;  4PMH A;  5C1C A;  2NZM A;  1HG8 A;  3VSU A;  4YEJ A;  4U49 A;  4XON A;  1O8F A;  2QX3 A;  4XLH A;  1RWR A;  4XLA A;  3WWG A;  2PYH A;  1JRG A;  3EQO A;  1EE6 A;  1RU4 A;  2ODL A;  4C2L A;  3VST A;  1OGO X;  4Z03 A;  4W8Q A;  4I84 A;  1JTA A;  1OFM A;  3GQA A;  4XLF A;  4XLC A;  1O8G A;  1AIR A;  2X6X A;  4XN0 A;  3VMV A;  1IA5 A;  2VBE A;  2NT9 A;  4XLE A;  1OFL A;  1KCC A;  1CZF A;  4NK6 A;  3SUC A;  2UVF A;  4XNF A;  1X0C A;  3GQ7 A;  4Z05 A;  2X6Y A;  1O8L A;  3JUR A;  4XQF A;  1IDK A;  1IDJ A;  4HWV A;  1QCX A;  3GQ9 A;  1O8E A;  4MR0 A;  4XOP A;  4OJO A;  2NTB A;  5C1E A;  4YZX A;  2O17 A;  4OJL A;  2X3H A;  4W8R A;  2NST A;  2INV A;  2NSP A;  1IB4 A;  2QXZ A;  4YZ0 A;  3LMW A;  1O8M A;  1XG2 A;  4W8S A;  2X85 A;  4XMY A;  4OJ6 A;  1K5C A;  1OGM X;  1DBG A;  2X6W A;  2VBK A;  4YZQ A;  2PEC A;  1OOC A;  1O8H A;  1NHC A;  4OZZ A;  1PLU A;  4Z06 A;  4OJP A;  4XOR A;  4NK8 A;  2QY1 A;  3B90 A;  3UW0 A;  1H80 A;  1O8D A;  4YZA A;  1O8J A;  1KTW A;  3T9G A;  3FY3 A;  4XL9 A;  5AMV A;  1O8K A;  4EW9 A;  4XR6 A;  2O0W A;  1O88 A;  4XOT A;  4XN3 A;  1O8I A;  2BSP A;  2VJI A;  3EQN A;  3GQ8 A;  4OJ5 A;  2NTP A;  3ZSC A;  3ZPP A;  1QJV A;  2INU A;  4OZY A;  4MXN A;  2Z8G A;  1VBL A;  1PXZ A;  1WMR A;  2VBM A;  3B4N A;  2EWE A;  3VSV A;  1DBO A;  1BHE A;  2NT6 A;  1PE9 A;  2O0V A;  4YEL A;  1GQ8 A; 
#chains in the Genus database with same CATH topology
 4YDT A;  3RIQ A;  1QA2 A;  1BN8 A;  3BH7 B;  2VFN A;  3PET A;  2NTQ A;  1QA1 A;  2VFQ A;  3DU1 X;  2F3L A;  3GRH A;  2J8K A;  4W8T A;  3VMW A;  2O04 A;  2BM4 A;  4U4B A;  1RMG A;  2VJJ A;  3KRG A;  3ML3 A;  1LM1 A;  4XKV A;  4AVZ A;  3B8Y A;  2O1D A;  2IQ7 A;  4XKW A;  4XM3 A;  3N90 A;  1DAB A;  2UVE A;  2PYG A;  2BM7 A;  3H09 A;  1QQ1 A;  4URR A;  3TH0 A;  1KCD A;  4PMH A;  5C1C A;  2XTW A;  3SZE A;  3P4G A;  2NZM A;  4YEI A;  1HG8 A;  2G0Y A;  2BM6 A;  2XT2 A;  4YEJ A;  3SQV A;  3VSU A;  1QA3 A;  4U49 A;  4XON A;  1O8F A;  2QX3 A;  4XLH A;  2VFM A;  1RWR A;  4XLA A;  2VFP A;  4OPW A;  3WWG A;  2PYH A;  1JRG A;  2B0R A;  3EQO A;  1EE6 A;  1RU4 A;  1WXR A;  2XT4 A;  2ODL A;  4C2L A;  3VST A;  1OGO X;  4Z03 A;  4W8Q A;  5DNS A;  4I84 A;  1JTA A;  1OFM A;  2BM5 A;  3GQA A;  3LYC A;  4XLF A;  4XLC A;  1O8G A;  1AIR A;  2X6X A;  4XN0 A;  3VMV A;  1IA5 A;  2VBE A;  2NT9 A;  4V02 C;  4XLE A;  1OFL A;  1LLW A;  2QZA A;  1OFE A;  2XC1 A;  1KCC A;  1CZF A;  4NK6 A;  3SUC A;  2UVF A;  4XNF A;  1X0C A;  3GQ7 A;  4Z05 A;  2X6Y A;  1O8L A;  3JUR A;  4XQF A;  1IDK A;  1IDJ A;  4HWV A;  1K8F A;  1CLW A;  1QCX A;  1HF2 A;  3GQ9 A;  1O8E A;  4MR0 A;  4XOP A;  4OJO A;  2NTB A;  1LLZ A;  5C1E A;  3JX8 A;  4YZX A;  2O17 A;  4OJL A;  2VFO A;  1K4Z A;  2X3H A;  2XTY A;  3NAW A;  4OM9 A;  4W8R A;  2NST A;  1KQ5 A;  1QRC A;  3AK5 A;  2INV A;  2NSP A;  1QRB A;  1IB4 A;  2QXZ A;  4YZ0 A;  3LMW A;  2V5I A;  1O8M A;  1XG2 A;  1TYW A;  4W8S A;  2X85 A;  4XMY A;  5JLV C;  4OJ6 A;  2QYU A;  3NB2 A;  5JMC B;  1TYX A;  1K5C A;  1OGM X;  4KH3 A;  3PSS A;  1DBG A;  2X6W A;  3SYJ A;  2VBK A;  4YZQ A;  2PEC A;  3N6Z A;  1OOC A;  1O8H A;  1TYU A;  2O6W A;  3BH6 B;  1NHC A;  4OZZ A;  1PLU A;  4Z06 A;  4OJP A;  4YCQ A;  2YUH A;  4JRA C;  4XOR A;  1L1I A;  4NK8 A;  2J8I A;  2QY1 A;  3LJY A;  1EA0 A;  3B90 A;  3UW0 A;  1OFD A;  1O8D A;  1H80 A;  4YZA A;  1O8J A;  1KTW A;  3T9G A;  3FY3 A;  3PSZ A;  4XL9 A;  5AMV A;  1O8K A;  4EW9 A;  4XR6 A;  2O0W A;  1O88 A;  4XOT A;  4XN3 A;  1O8I A;  2BSP A;  2VJI A;  3EQN A;  3GQ8 A;  4OJ5 A;  4YC5 A;  4YFO A;  2NTP A;  1EZG A;  3SY2 A;  1TSP A;  3ZSC A;  3ZPP A;  1QJV A;  2INU A;  4OZY A;  4MXN A;  2BX6 A;  2Z8G A;  1VBL A;  2W7Z A;  1PXZ A;  1WMR A;  2VBM A;  3B4N A;  1TYV A;  2IOU G;  2EWE A;  3VSV A;  1DBO A;  1BHE A;  2NT6 A;  1PE9 A;  2XTX A;  2O0V A;  4YEL A;  1GQ8 A; 
#chains in the Genus database with same CATH homology
 1BN8 A;  2NTQ A;  3GRH A;  4W8T A;  3VMW A;  2O04 A;  4U4B A;  1RMG A;  2VJJ A;  3KRG A;  4XKV A;  4AVZ A;  3B8Y A;  2O1D A;  2IQ7 A;  4XKW A;  4XM3 A;  2UVE A;  2PYG A;  4URR A;  1KCD A;  4PMH A;  5C1C A;  2NZM A;  1HG8 A;  3VSU A;  4YEJ A;  4U49 A;  4XON A;  1O8F A;  2QX3 A;  4XLH A;  1RWR A;  4XLA A;  3WWG A;  2PYH A;  1JRG A;  3EQO A;  1EE6 A;  1RU4 A;  2ODL A;  4C2L A;  3VST A;  1OGO X;  4Z03 A;  4W8Q A;  4I84 A;  1JTA A;  1OFM A;  3GQA A;  4XLF A;  4XLC A;  1O8G A;  1AIR A;  2X6X A;  4XN0 A;  3VMV A;  1IA5 A;  2VBE A;  2NT9 A;  4XLE A;  1OFL A;  1KCC A;  1CZF A;  4NK6 A;  3SUC A;  2UVF A;  4XNF A;  1X0C A;  3GQ7 A;  4Z05 A;  2X6Y A;  1O8L A;  3JUR A;  4XQF A;  1IDK A;  1IDJ A;  4HWV A;  1QCX A;  3GQ9 A;  1O8E A;  4MR0 A;  4XOP A;  4OJO A;  2NTB A;  5C1E A;  4YZX A;  2O17 A;  4OJL A;  2X3H A;  4W8R A;  2NST A;  2INV A;  2NSP A;  1IB4 A;  2QXZ A;  4YZ0 A;  3LMW A;  1O8M A;  1XG2 A;  4W8S A;  2X85 A;  4XMY A;  4OJ6 A;  1K5C A;  1OGM X;  1DBG A;  2X6W A;  2VBK A;  4YZQ A;  2PEC A;  1OOC A;  1O8H A;  1NHC A;  4OZZ A;  1PLU A;  4Z06 A;  4OJP A;  4XOR A;  4NK8 A;  2QY1 A;  3B90 A;  3UW0 A;  1H80 A;  1O8D A;  4YZA A;  1O8J A;  1KTW A;  3T9G A;  3FY3 A;  4XL9 A;  5AMV A;  1O8K A;  4EW9 A;  4XR6 A;  2O0W A;  1O88 A;  4XOT A;  4XN3 A;  1O8I A;  2BSP A;  2VJI A;  3EQN A;  3GQ8 A;  4OJ5 A;  2NTP A;  3ZSC A;  3ZPP A;  1QJV A;  2INU A;  4OZY A;  4MXN A;  2Z8G A;  1VBL A;  1PXZ A;  1WMR A;  2VBM A;  3B4N A;  2EWE A;  3VSV A;  1DBO A;  1BHE A;  2NT6 A;  1PE9 A;  2O0V A;  4YEL A;  1GQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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