4C2LA

Crystal structure of endo-xylogalacturonan hydrolase from aspergillus tubingensis
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
372
structure length
372
Chain Sequence
b'AVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGSTYYLNSVLDLGSCSDCDIQVEGLLKFASDTDYWSGRTAMISVSNVDGLKLRSLTGSGVIDGNGQDAWDLFASDSSYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGGATNVVFSNLKMDANSKSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPSSNYVTVDTISCTGSHGISVGSLGKSSDDSVKNIYVTGATMINSTKAAGIKTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSSFSGTTSDKYDPVVANLDCGADGTCGISISGFDVKAPSGKSEVLCANTPSDLGVTCTSGASG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ENDO-XYLOGALACTURONAN HYDROLASE A
publication title Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.
pubmed doi rcsb
source organism Aspergillus tubingensis
molecule tags Hydrolase
total genus 149
structure length 372
sequence length 372
ec nomenclature ec 3.2.1.-:
pdb deposition date 2013-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4c2lA00
1BHEA 4W8TA 4XN3A 4OJPA 2X6XA 3GQ7A 4OZZA 1KCDA 2PYGA 4XLEA 4Z06A 1JRGA 5C1EA 3WWGA 3VSTA 1QCXA 4XLHA 4YZQA 4YZ0A 2BSPA 4XLFA 1QJVA 3GRHA 4W8SA 3VMVA 2QXZA 2QY1A 2EWEA 3B8YA 1O8GA 1HG8A 2NTPA 4OJLA 4W8RA 4XQFA 2O04A 2NTQA 4W8QA 1PE9A 1RMGA 1O8FA 4U4BA 4U49A 4Z03A 1VBLA 4C2LA 4NK8A 1K5CA 2NT6A 2X3HA 4MXNA 2PECA 1OFMA 2O17A 3VSUA 4YEJA 2O0VA 3JURA 4NK6A 2VJIA 4XM3A 1WMRA 1DBGA 4XONA 2NSTA 4I84A 3GQ8A 2O1DA 1RWRA 3B90A 4OZYA 4Z05A 1DBOA 1OGMX 3GQAA 1O8MA 1O8IA 2PYHA 4XOPA 2NTBA 1IA5A 1O8EA 2INUA 3FY3A 1PLUA 2INVA 3EQOA 4MR0A 1EE6A 2X6YA 1O8LA 4XR6A 3ZSCA 4XKVA 2NT9A 2UVEA 4YELA 2NSPA 3EQNA 4AVZA 2IQ7A 2VBMA 1CZFA 1OOCA 4XL9A 4YZAA 4XORA 4XLAA 3GQ9A 3UW0A 1IB4A 4OJOA 1IDJA 4XNFA 1BN8A 4XMYA 2QX3A 1AIRA 5AMVA 1X0CA 1O8DA 2X6WA 2UVFA 1O8JA 2X85A 1PXZA 3B4NA 4YZXA 4PMHA 1OFLA 2ODLA 5C1CA 2O0WA 3SUCA 2VBEA 1XG2A 1GQ8A 1NHCA 1JTAA 1IDKA 3T9GA 1OGOX 4XN0A 1KTWA 4XLCA 4URRA 2VBKA 4XKWA 2VJJA 3VSVA 1O88A 4OJ5A 2NZMA 1KCCA 1O8HA 4OJ6A 3ZPPA 4HWVA 4EW9A 2Z8GA 3KRGA 3VMWA 3LMWA 1RU4A 1O8KA 1H80A 4XOTA
chains in the Genus database with same CATH superfamily
1BHEA 1TSPA 3NAWA 4W8TA 4XN3A 4KH3A 4OJPA 1TYWA 2X6XA 3GQ7A 4OZZA 1KCDA 2PYGA 4XLEA 4Z06A 2BM5A 1JRGA 5C1EA 3SY2A 3N6ZA 3WWGA 2XTXA 3VSTA 1QCXA 4XLHA 4YDTA 4YZQA 4YZ0A 1DABA 2BSPA 3LJYA 4XLFA 1QJVA 3GRHA 5JMCB 4W8SA 3VMVA 3DU1X 2QXZA 2QY1A 1CLWA 1QA3A 1QRBA 2EWEA 3B8YA 2IOUG 1O8GA 3NB2A 3JX8A 1HG8A 2NTPA 4OJLA 4OPWA 4W8RA 4XQFA 2O04A 1LM1A 2NTQA 2BM7A 3TH0A 4W8QA 1PE9A 1RMGA 1O8FA 3RIQA 4U4BA 5DNSA 4U49A 4Z03A 1VBLA 4C2LA 4NK8A 1K5CA 2XTYA 2NT6A 2X3HA 4MXNA 2PECA 1OFMA 1OFEA 2O17A 1K8FA 2QZAA 3VSUA 4YEJA 2O0VA 3JURA 4NK6A 1OFDA 2VJIA 4XM3A 1WMRA 1DBGA 1TYXA 4XONA 2NSTA 2VFOA 4I84A 1TYUA 3GQ8A 3SQVA 1K4ZA 2O1DA 1RWRA 2QYUA 3B90A 3BH6B 4OZYA 4Z05A 1L1IA 1DBOA 1OGMX 3GQAA 1O8MA 3SYJA 1O8IA 2PYHA 4XOPA 2NTBA 1IA5A 1QRCA 3AK5A 1O8EA 2INUA 3FY3A 3PSSA 4YFOA 2W7ZA 1PLUA 2INVA 3EQOA 2YUHA 4MR0A 1EE6A 2X6YA 1O8LA 4XR6A 3ZSCA 1KQ5A 2NT9A 2UVEA 4XKVA 4YELA 4V02C 2NSPA 2XT4A 3EQNA 4XOTA 1LLZA 4AVZA 2IQ7A 1EZGA 2VBMA 3BH7B 1QA1A 1CZFA 1OOCA 2XC1A 4XL9A 4YZAA 4XORA 4XLAA 3GQ9A 3UW0A 1IB4A 2XTWA 4OJOA 1IDJA 1QQ1A 1BN8A 4XNFA 4XMYA 1QA2A 2QX3A 1AIRA 5AMVA 2BX6A 2VFNA 1X0CA 1O8DA 3PSZA 2X6WA 2UVFA 4OM9A 2F3LA 1O8JA 2X85A 1PXZA 3B4NA 3P4GA 4YZXA 2BM6A 4PMHA 4YEIA 1OFLA 2ODLA 1EA0A 2BM4A 3SZEA 3H09A 2O0WA 3SUCA 2VBEA 5C1CA 2VFQA 2B0RA 1XG2A 1GQ8A 1LLWA 2O6WA 3ML3A 1NHCA 1JTAA 1IDKA 3N90A 1TYVA 3PETA 1OGOX 4XN0A 1KTWA 3T9GA 4XLCA 2G0YA 2VFMA 5JLVC 1HF2A 4URRA 2VBKA 4XKWA 2VJJA 3VSVA 4YC5A 1O88A 2J8KA 4OJ5A 2NZMA 1KCCA 2V5IA 1O8HA 4OJ6A 3ZPPA 2VFPA 3LYCA 4HWVA 4EW9A 2J8IA 2Z8GA 1WXRA 3KRGA 3VMWA 3LMWA 1RU4A 1O8KA 4YCQA 1H80A 2XT2A 4JRAC
chains in the Genus database with same CATH topology
1BHEA 4W8TA 4XN3A 4OJPA 2X6XA 3GQ7A 4OZZA 1KCDA 2PYGA 4XLEA 4Z06A 1JRGA 5C1EA 3WWGA 3VSTA 1QCXA 4XLHA 4YZQA 4YZ0A 2BSPA 4XLFA 1QJVA 3GRHA 4W8SA 3VMVA 2QXZA 2QY1A 2EWEA 3B8YA 1O8GA 1HG8A 2NTPA 4OJLA 4W8RA 4XQFA 2O04A 2NTQA 4W8QA 1PE9A 1RMGA 1O8FA 4U4BA 4U49A 4Z03A 1VBLA 4C2LA 4NK8A 1K5CA 2NT6A 2X3HA 4MXNA 2PECA 1OFMA 2O17A 3VSUA 4YEJA 2O0VA 3JURA 4NK6A 2VJIA 4XM3A 1WMRA 1DBGA 4XONA 2NSTA 4I84A 3GQ8A 2O1DA 1RWRA 3B90A 4OZYA 4Z05A 1DBOA 1OGMX 3GQAA 1O8MA 1O8IA 2PYHA 4XOPA 2NTBA 1IA5A 1O8EA 2INUA 3FY3A 1PLUA 2INVA 3EQOA 4MR0A 1EE6A 2X6YA 1O8LA 4XR6A 3ZSCA 4XKVA 2NT9A 2UVEA 4YELA 2NSPA 3EQNA 4AVZA 2IQ7A 2VBMA 1CZFA 1OOCA 4XL9A 4YZAA 4XORA 4XLAA 3GQ9A 3UW0A 1IB4A 4OJOA 1IDJA 4XNFA 1BN8A 4XMYA 2QX3A 1AIRA 5AMVA 1X0CA 1O8DA 2X6WA 2UVFA 1O8JA 2X85A 1PXZA 3B4NA 4YZXA 4PMHA 1OFLA 2ODLA 5C1CA 2O0WA 3SUCA 2VBEA 1XG2A 1GQ8A 1NHCA 1JTAA 1IDKA 3T9GA 1OGOX 4XN0A 1KTWA 4XLCA 4URRA 2VBKA 4XKWA 2VJJA 3VSVA 1O88A 4OJ5A 2NZMA 1KCCA 1O8HA 4OJ6A 3ZPPA 4HWVA 4EW9A 2Z8GA 3KRGA 3VMWA 3LMWA 1RU4A 1O8KA 1H80A 4XOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BHE A;  4W8T A;  4XN3 A;  4OJP A;  2X6X A;  3GQ7 A;  4OZZ A;  1KCD A;  2PYG A;  4XLE A;  4Z06 A;  1JRG A;  5C1E A;  3WWG A;  3VST A;  1QCX A;  4XLH A;  4YZQ A;  4YZ0 A;  2BSP A;  4XLF A;  1QJV A;  3GRH A;  4W8S A;  3VMV A;  2QXZ A;  2QY1 A;  2EWE A;  3B8Y A;  1O8G A;  1HG8 A;  2NTP A;  4OJL A;  4W8R A;  4XQF A;  2O04 A;  2NTQ A;  4W8Q A;  1PE9 A;  1RMG A;  1O8F A;  4U4B A;  4U49 A;  4Z03 A;  1VBL A;  4C2L A;  4NK8 A;  1K5C A;  2NT6 A;  2X3H A;  4MXN A;  2PEC A;  1OFM A;  2O17 A;  3VSU A;  4YEJ A;  2O0V A;  3JUR A;  4NK6 A;  2VJI A;  4XM3 A;  1WMR A;  1DBG A;  4XON A;  2NST A;  4I84 A;  3GQ8 A;  2O1D A;  1RWR A;  3B90 A;  4OZY A;  4Z05 A;  1DBO A;  1OGM X;  3GQA A;  1O8M A;  1O8I A;  2PYH A;  4XOP A;  2NTB A;  1IA5 A;  1O8E A;  2INU A;  3FY3 A;  1PLU A;  2INV A;  3EQO A;  4MR0 A;  1EE6 A;  2X6Y A;  1O8L A;  4XR6 A;  3ZSC A;  4XKV A;  2NT9 A;  2UVE A;  4YEL A;  2NSP A;  3EQN A;  4AVZ A;  2IQ7 A;  2VBM A;  1CZF A;  1OOC A;  4XL9 A;  4YZA A;  4XOR A;  4XLA A;  3GQ9 A;  3UW0 A;  1IB4 A;  4OJO A;  1IDJ A;  4XNF A;  1BN8 A;  4XMY A;  2QX3 A;  1AIR A;  5AMV A;  1X0C A;  1O8D A;  2X6W A;  2UVF A;  1O8J A;  2X85 A;  1PXZ A;  3B4N A;  4YZX A;  4PMH A;  1OFL A;  2ODL A;  5C1C A;  2O0W A;  3SUC A;  2VBE A;  1XG2 A;  1GQ8 A;  1NHC A;  1JTA A;  1IDK A;  3T9G A;  1OGO X;  4XN0 A;  1KTW A;  4XLC A;  4URR A;  2VBK A;  4XKW A;  2VJJ A;  3VSV A;  1O88 A;  4OJ5 A;  2NZM A;  1KCC A;  1O8H A;  4OJ6 A;  3ZPP A;  4HWV A;  4EW9 A;  2Z8G A;  3KRG A;  3VMW A;  3LMW A;  1RU4 A;  1O8K A;  1H80 A;  4XOT A; 
#chains in the Genus database with same CATH topology
 1BHE A;  1TSP A;  3NAW A;  4W8T A;  4XN3 A;  4KH3 A;  4OJP A;  1TYW A;  2X6X A;  3GQ7 A;  4OZZ A;  1KCD A;  2PYG A;  4XLE A;  4Z06 A;  2BM5 A;  1JRG A;  5C1E A;  3SY2 A;  3N6Z A;  3WWG A;  2XTX A;  3VST A;  1QCX A;  4XLH A;  4YDT A;  4YZQ A;  4YZ0 A;  1DAB A;  2BSP A;  3LJY A;  4XLF A;  1QJV A;  3GRH A;  5JMC B;  4W8S A;  3VMV A;  3DU1 X;  2QXZ A;  2QY1 A;  1CLW A;  1QA3 A;  1QRB A;  2EWE A;  3B8Y A;  2IOU G;  1O8G A;  3NB2 A;  3JX8 A;  1HG8 A;  2NTP A;  4OJL A;  4OPW A;  4W8R A;  4XQF A;  2O04 A;  1LM1 A;  2NTQ A;  2BM7 A;  3TH0 A;  4W8Q A;  1PE9 A;  1RMG A;  1O8F A;  3RIQ A;  4U4B A;  5DNS A;  4U49 A;  4Z03 A;  1VBL A;  4C2L A;  4NK8 A;  1K5C A;  2XTY A;  2NT6 A;  2X3H A;  4MXN A;  2PEC A;  1OFM A;  1OFE A;  2O17 A;  1K8F A;  2QZA A;  3VSU A;  4YEJ A;  2O0V A;  3JUR A;  4NK6 A;  1OFD A;  2VJI A;  4XM3 A;  1WMR A;  1DBG A;  1TYX A;  4XON A;  2NST A;  2VFO A;  4I84 A;  1TYU A;  3GQ8 A;  3SQV A;  1K4Z A;  2O1D A;  1RWR A;  2QYU A;  3B90 A;  3BH6 B;  4OZY A;  4Z05 A;  1L1I A;  1DBO A;  1OGM X;  3GQA A;  1O8M A;  3SYJ A;  1O8I A;  2PYH A;  4XOP A;  2NTB A;  1IA5 A;  1QRC A;  3AK5 A;  1O8E A;  2INU A;  3FY3 A;  3PSS A;  4YFO A;  2W7Z A;  1PLU A;  2INV A;  3EQO A;  2YUH A;  4MR0 A;  1EE6 A;  2X6Y A;  1O8L A;  4XR6 A;  3ZSC A;  1KQ5 A;  2NT9 A;  2UVE A;  4XKV A;  4YEL A;  4V02 C;  2NSP A;  2XT4 A;  3EQN A;  4XOT A;  1LLZ A;  4AVZ A;  2IQ7 A;  1EZG A;  2VBM A;  3BH7 B;  1QA1 A;  1CZF A;  1OOC A;  2XC1 A;  4XL9 A;  4YZA A;  4XOR A;  4XLA A;  3GQ9 A;  3UW0 A;  1IB4 A;  2XTW A;  4OJO A;  1IDJ A;  1QQ1 A;  1BN8 A;  4XNF A;  4XMY A;  1QA2 A;  2QX3 A;  1AIR A;  5AMV A;  2BX6 A;  2VFN A;  1X0C A;  1O8D A;  3PSZ A;  2X6W A;  2UVF A;  4OM9 A;  2F3L A;  1O8J A;  2X85 A;  1PXZ A;  3B4N A;  3P4G A;  4YZX A;  2BM6 A;  4PMH A;  4YEI A;  1OFL A;  2ODL A;  1EA0 A;  2BM4 A;  3SZE A;  3H09 A;  2O0W A;  3SUC A;  2VBE A;  5C1C A;  2VFQ A;  2B0R A;  1XG2 A;  1GQ8 A;  1LLW A;  2O6W A;  3ML3 A;  1NHC A;  1JTA A;  1IDK A;  3N90 A;  1TYV A;  3PET A;  1OGO X;  4XN0 A;  1KTW A;  3T9G A;  4XLC A;  2G0Y A;  2VFM A;  5JLV C;  1HF2 A;  4URR A;  2VBK A;  4XKW A;  2VJJ A;  3VSV A;  4YC5 A;  1O88 A;  2J8K A;  4OJ5 A;  2NZM A;  1KCC A;  2V5I A;  1O8H A;  4OJ6 A;  3ZPP A;  2VFP A;  3LYC A;  4HWV A;  4EW9 A;  2J8I A;  2Z8G A;  1WXR A;  3KRG A;  3VMW A;  3LMW A;  1RU4 A;  1O8K A;  4YCQ A;  1H80 A;  2XT2 A;  4JRA C; 
#chains in the Genus database with same CATH homology
 1BHE A;  4W8T A;  4XN3 A;  4OJP A;  2X6X A;  3GQ7 A;  4OZZ A;  1KCD A;  2PYG A;  4XLE A;  4Z06 A;  1JRG A;  5C1E A;  3WWG A;  3VST A;  1QCX A;  4XLH A;  4YZQ A;  4YZ0 A;  2BSP A;  4XLF A;  1QJV A;  3GRH A;  4W8S A;  3VMV A;  2QXZ A;  2QY1 A;  2EWE A;  3B8Y A;  1O8G A;  1HG8 A;  2NTP A;  4OJL A;  4W8R A;  4XQF A;  2O04 A;  2NTQ A;  4W8Q A;  1PE9 A;  1RMG A;  1O8F A;  4U4B A;  4U49 A;  4Z03 A;  1VBL A;  4C2L A;  4NK8 A;  1K5C A;  2NT6 A;  2X3H A;  4MXN A;  2PEC A;  1OFM A;  2O17 A;  3VSU A;  4YEJ A;  2O0V A;  3JUR A;  4NK6 A;  2VJI A;  4XM3 A;  1WMR A;  1DBG A;  4XON A;  2NST A;  4I84 A;  3GQ8 A;  2O1D A;  1RWR A;  3B90 A;  4OZY A;  4Z05 A;  1DBO A;  1OGM X;  3GQA A;  1O8M A;  1O8I A;  2PYH A;  4XOP A;  2NTB A;  1IA5 A;  1O8E A;  2INU A;  3FY3 A;  1PLU A;  2INV A;  3EQO A;  4MR0 A;  1EE6 A;  2X6Y A;  1O8L A;  4XR6 A;  3ZSC A;  4XKV A;  2NT9 A;  2UVE A;  4YEL A;  2NSP A;  3EQN A;  4AVZ A;  2IQ7 A;  2VBM A;  1CZF A;  1OOC A;  4XL9 A;  4YZA A;  4XOR A;  4XLA A;  3GQ9 A;  3UW0 A;  1IB4 A;  4OJO A;  1IDJ A;  4XNF A;  1BN8 A;  4XMY A;  2QX3 A;  1AIR A;  5AMV A;  1X0C A;  1O8D A;  2X6W A;  2UVF A;  1O8J A;  2X85 A;  1PXZ A;  3B4N A;  4YZX A;  4PMH A;  1OFL A;  2ODL A;  5C1C A;  2O0W A;  3SUC A;  2VBE A;  1XG2 A;  1GQ8 A;  1NHC A;  1JTA A;  1IDK A;  3T9G A;  1OGO X;  4XN0 A;  1KTW A;  4XLC A;  4URR A;  2VBK A;  4XKW A;  2VJJ A;  3VSV A;  1O88 A;  4OJ5 A;  2NZM A;  1KCC A;  1O8H A;  4OJ6 A;  3ZPP A;  4HWV A;  4EW9 A;  2Z8G A;  3KRG A;  3VMW A;  3LMW A;  1RU4 A;  1O8K A;  1H80 A;  4XOT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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