1OFLA

Crystal structure of chondroitinase b complexed to dermatan sulfate hexasaccharide
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
481
structure length
481
Chain Sequence
b'EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
molecule tags Lyase
source organism Pedobacter heparinus
publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
total genus 185
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oflA00
1PXZA 1OGMX 1RMGA 2QY1A 3GQAA 1VBLA 4HWVA 4MXNA 4Z03A 4U49A 2O1DA 2X3HA 1OGOX 4W8SA 2QX3A 4OJOA 2IQ7A 3B4NA 4OZYA 4C2LA 4YELA 4XM3A 2O04A 2INUA 4YZAA 1PE9A 2ODLA 2PECA 1X0CA 4OJPA 3EQOA 1O8IA 4OZZA 3LMWA 1PLUA 3GQ8A 3VSVA 1IA5A 1QCXA 3KRGA 4EW9A 4XORA 4OJ5A 4Z05A 2VBMA 3T9GA 2X6YA 4XR6A 1QJVA 2BSPA 2O17A 1O8HA 1BHEA 4XOPA 4PMHA 2EWEA 1H80A 2NT6A 2VBEA 4I84A 1AIRA 4YZXA 4W8TA 3B90A 4XN0A 3VMWA 3UW0A 4XLAA 2Z8GA 4XQFA 3B8YA 2PYHA 1BN8A 1GQ8A 3FY3A 1DBOA 4YEJA 2UVEA 4XONA 2NTQA 2NTPA 4XL9A 1IDKA 3VMVA 1K5CA 1RU4A 1O8KA 4OJLA 2QXZA 1DBGA 5AMVA 2NT9A 4XLCA 1IB4A 2NSTA 1HG8A 4U4BA 2UVFA 2NSPA 4XNFA 3VSTA 4YZQA 2INVA 2VJIA 1EE6A 4NK8A 4XKWA 2VBKA 2X85A 3ZPPA 1WMRA 4XMYA 3WWGA 2PYGA 4W8RA 1KCCA 3SUCA 2X6WA 4W8QA 4XKVA 4XLHA 1OFMA 3EQNA 3VSUA 1O88A 5C1EA 1KTWA 1O8EA 4NK6A 3ZSCA 1JRGA 3GQ7A 1O8MA 2VJJA 1OFLA 4URRA 2O0WA 1JTAA 1RWRA 1XG2A 4XLFA 4XLEA 2O0VA 1NHCA 3JURA 4YZ0A 3GRHA 1O8GA 1O8LA 2NTBA 4XOTA 1O8JA 1O8DA 4Z06A 5C1CA 4XN3A 2X6XA 2NZMA 1IDJA 4MR0A 4AVZA 3GQ9A 1OOCA 4OJ6A 1O8FA 1KCDA 1CZFA
chains in the Genus database with same CATH superfamily
1PXZA 3TH0A 1OGMX 1RMGA 2QY1A 3GQAA 1VBLA 4HWVA 2W7ZA 2XTYA 4MXNA 4Z03A 4U49A 2O1DA 2X3HA 1OGOX 3LJYA 4W8SA 5JMCB 4OPWA 1WXRA 2QX3A 4OJOA 3AK5A 2IQ7A 3H09A 4JRAC 3B4NA 2IOUG 4OZYA 3N90A 4C2LA 4YELA 4XM3A 2O04A 3N6ZA 2INUA 3JX8A 4YZAA 1PE9A 2ODLA 2PECA 1X0CA 2VFNA 2YUHA 4OJPA 3EQOA 1O8IA 1DABA 4OZZA 1KQ5A 3LMWA 1PLUA 2BM6A 2XT2A 3SYJA 3GQ8A 3VSVA 1IA5A 1QCXA 2BM7A 3KRGA 4XORA 4EW9A 4OJ5A 2F3LA 4Z05A 2VBMA 3PSSA 3T9GA 1TSPA 2J8KA 2X6YA 4XR6A 1TYVA 1QJVA 2BSPA 2O17A 3LYCA 1K4ZA 1O8HA 3SY2A 1BHEA 4XOPA 4PMHA 2EWEA 1H80A 2NT6A 4YDTA 2V5IA 2G0YA 3SQVA 2BX6A 2VBEA 4I84A 1AIRA 4YZXA 4YEIA 4KH3A 4W8TA 3B90A 4XN0A 3VMWA 3PSZA 3UW0A 1OFDA 2QYUA 4XLAA 2Z8GA 5DNSA 1QRBA 4XQFA 1QQ1A 4YFOA 1LLWA 2QZAA 4YCQA 2VFOA 3B8YA 2PYHA 1BN8A 3P4GA 3ML3A 1GQ8A 3DU1X 1QA3A 1K8FA 2XTXA 1DBOA 3FY3A 2UVEA 2VFQA 2NTQA 2NTPA 4XL9A 1IDKA 4XONA 3VMVA 1K5CA 1LM1A 1RU4A 1TYXA 3PETA 1O8KA 4YEJA 4OJLA 1QA1A 2QXZA 1DBGA 2XC1A 5AMVA 2NT9A 1CLWA 2B0RA 4XLCA 1IB4A 2NSTA 2XTWA 1HG8A 3NB2A 1QA2A 2BM4A 4OM9A 2UVFA 1LLZA 2NSPA 4U4BA 4V02C 4XNFA 3VSTA 4YZQA 2INVA 2VJIA 1EE6A 2J8IA 4NK8A 4XKWA 2VBKA 2X85A 3ZPPA 1WMRA 4XMYA 5JLVC 1QRCA 3WWGA 2PYGA 4W8RA 1TYUA 1KCCA 3SUCA 2X6WA 4W8QA 2BM5A 4XKVA 1OFMA 4XLHA 4YC5A 1OFEA 3NAWA 3EQNA 2VFMA 3BH7B 3VSUA 3SZEA 1O88A 5C1EA 1KTWA 1O8EA 4NK6A 3ZSCA 2O6WA 1JRGA 2VFPA 3GQ7A 1EZGA 1O8MA 1OFLA 2VJJA 4URRA 2O0WA 1JTAA 1RWRA 2XT4A 1XG2A 4XLFA 4XLEA 1TYWA 2O0VA 1NHCA 3JURA 4YZ0A 1EA0A 3GRHA 1O8GA 1O8LA 2NTBA 1L1IA 4XOTA 1O8DA 1O8JA 4Z06A 5C1CA 4XN3A 3BH6B 2X6XA 2NZMA 1IDJA 1HF2A 4MR0A 3GQ9A 1OOCA 3RIQA 4OJ6A 4AVZA 1O8FA 1KCDA 1CZFA
chains in the Genus database with same CATH topology
1PXZA 1OGMX 1RMGA 2QY1A 3GQAA 1VBLA 4HWVA 4MXNA 4Z03A 4U49A 2O1DA 2X3HA 1OGOX 4W8SA 2QX3A 4OJOA 2IQ7A 3B4NA 4OZYA 4C2LA 4YELA 4XM3A 2O04A 2INUA 4YZAA 1PE9A 2ODLA 2PECA 1X0CA 4OJPA 3EQOA 1O8IA 4OZZA 3LMWA 1PLUA 3GQ8A 3VSVA 1IA5A 1QCXA 3KRGA 4EW9A 4XORA 4OJ5A 4Z05A 2VBMA 3T9GA 2X6YA 4XR6A 1QJVA 2BSPA 2O17A 1O8HA 1BHEA 4XOPA 4PMHA 2EWEA 1H80A 2NT6A 2VBEA 4I84A 1AIRA 4YZXA 4W8TA 3B90A 4XN0A 3VMWA 3UW0A 4XLAA 2Z8GA 4XQFA 3B8YA 2PYHA 1BN8A 1GQ8A 3FY3A 1DBOA 4YEJA 2UVEA 4XONA 2NTQA 2NTPA 4XL9A 1IDKA 3VMVA 1K5CA 1RU4A 1O8KA 4OJLA 2QXZA 1DBGA 5AMVA 2NT9A 4XLCA 1IB4A 2NSTA 1HG8A 4U4BA 2UVFA 2NSPA 4XNFA 3VSTA 4YZQA 2INVA 2VJIA 1EE6A 4NK8A 4XKWA 2VBKA 2X85A 3ZPPA 1WMRA 4XMYA 3WWGA 2PYGA 4W8RA 1KCCA 3SUCA 2X6WA 4W8QA 4XKVA 4XLHA 1OFMA 3EQNA 3VSUA 1O88A 5C1EA 1KTWA 1O8EA 4NK6A 3ZSCA 1JRGA 3GQ7A 1O8MA 2VJJA 1OFLA 4URRA 2O0WA 1JTAA 1RWRA 1XG2A 4XLFA 4XLEA 2O0VA 1NHCA 3JURA 4YZ0A 3GRHA 1O8GA 1O8LA 2NTBA 4XOTA 1O8JA 1O8DA 4Z06A 5C1CA 4XN3A 2X6XA 2NZMA 1IDJA 4MR0A 4AVZA 3GQ9A 1OOCA 4OJ6A 1O8FA 1KCDA 1CZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXZ A;  1OGM X;  1RMG A;  2QY1 A;  3GQA A;  1VBL A;  4HWV A;  4MXN A;  4Z03 A;  4U49 A;  2O1D A;  2X3H A;  1OGO X;  4W8S A;  2QX3 A;  4OJO A;  2IQ7 A;  3B4N A;  4OZY A;  4C2L A;  4YEL A;  4XM3 A;  2O04 A;  2INU A;  4YZA A;  1PE9 A;  2ODL A;  2PEC A;  1X0C A;  4OJP A;  3EQO A;  1O8I A;  4OZZ A;  3LMW A;  1PLU A;  3GQ8 A;  3VSV A;  1IA5 A;  1QCX A;  3KRG A;  4EW9 A;  4XOR A;  4OJ5 A;  4Z05 A;  2VBM A;  3T9G A;  2X6Y A;  4XR6 A;  1QJV A;  2BSP A;  2O17 A;  1O8H A;  1BHE A;  4XOP A;  4PMH A;  2EWE A;  1H80 A;  2NT6 A;  2VBE A;  4I84 A;  1AIR A;  4YZX A;  4W8T A;  3B90 A;  4XN0 A;  3VMW A;  3UW0 A;  4XLA A;  2Z8G A;  4XQF A;  3B8Y A;  2PYH A;  1BN8 A;  1GQ8 A;  3FY3 A;  1DBO A;  4YEJ A;  2UVE A;  4XON A;  2NTQ A;  2NTP A;  4XL9 A;  1IDK A;  3VMV A;  1K5C A;  1RU4 A;  1O8K A;  4OJL A;  2QXZ A;  1DBG A;  5AMV A;  2NT9 A;  4XLC A;  1IB4 A;  2NST A;  1HG8 A;  4U4B A;  2UVF A;  2NSP A;  4XNF A;  3VST A;  4YZQ A;  2INV A;  2VJI A;  1EE6 A;  4NK8 A;  4XKW A;  2VBK A;  2X85 A;  3ZPP A;  1WMR A;  4XMY A;  3WWG A;  2PYG A;  4W8R A;  1KCC A;  3SUC A;  2X6W A;  4W8Q A;  4XKV A;  4XLH A;  1OFM A;  3EQN A;  3VSU A;  1O88 A;  5C1E A;  1KTW A;  1O8E A;  4NK6 A;  3ZSC A;  1JRG A;  3GQ7 A;  1O8M A;  2VJJ A;  1OFL A;  4URR A;  2O0W A;  1JTA A;  1RWR A;  1XG2 A;  4XLF A;  4XLE A;  2O0V A;  1NHC A;  3JUR A;  4YZ0 A;  3GRH A;  1O8G A;  1O8L A;  2NTB A;  4XOT A;  1O8J A;  1O8D A;  4Z06 A;  5C1C A;  4XN3 A;  2X6X A;  2NZM A;  1IDJ A;  4MR0 A;  4AVZ A;  3GQ9 A;  1OOC A;  4OJ6 A;  1O8F A;  1KCD A;  1CZF A; 
#chains in the Genus database with same CATH topology
 1PXZ A;  3TH0 A;  1OGM X;  1RMG A;  2QY1 A;  3GQA A;  1VBL A;  4HWV A;  2W7Z A;  2XTY A;  4MXN A;  4Z03 A;  4U49 A;  2O1D A;  2X3H A;  1OGO X;  3LJY A;  4W8S A;  5JMC B;  4OPW A;  1WXR A;  2QX3 A;  4OJO A;  3AK5 A;  2IQ7 A;  3H09 A;  4JRA C;  3B4N A;  2IOU G;  4OZY A;  3N90 A;  4C2L A;  4YEL A;  4XM3 A;  2O04 A;  3N6Z A;  2INU A;  3JX8 A;  4YZA A;  1PE9 A;  2ODL A;  2PEC A;  1X0C A;  2VFN A;  2YUH A;  4OJP A;  3EQO A;  1O8I A;  1DAB A;  4OZZ A;  1KQ5 A;  3LMW A;  1PLU A;  2BM6 A;  2XT2 A;  3SYJ A;  3GQ8 A;  3VSV A;  1IA5 A;  1QCX A;  2BM7 A;  3KRG A;  4XOR A;  4EW9 A;  4OJ5 A;  2F3L A;  4Z05 A;  2VBM A;  3PSS A;  3T9G A;  1TSP A;  2J8K A;  2X6Y A;  4XR6 A;  1TYV A;  1QJV A;  2BSP A;  2O17 A;  3LYC A;  1K4Z A;  1O8H A;  3SY2 A;  1BHE A;  4XOP A;  4PMH A;  2EWE A;  1H80 A;  2NT6 A;  4YDT A;  2V5I A;  2G0Y A;  3SQV A;  2BX6 A;  2VBE A;  4I84 A;  1AIR A;  4YZX A;  4YEI A;  4KH3 A;  4W8T A;  3B90 A;  4XN0 A;  3VMW A;  3PSZ A;  3UW0 A;  1OFD A;  2QYU A;  4XLA A;  2Z8G A;  5DNS A;  1QRB A;  4XQF A;  1QQ1 A;  4YFO A;  1LLW A;  2QZA A;  4YCQ A;  2VFO A;  3B8Y A;  2PYH A;  1BN8 A;  3P4G A;  3ML3 A;  1GQ8 A;  3DU1 X;  1QA3 A;  1K8F A;  2XTX A;  1DBO A;  3FY3 A;  2UVE A;  2VFQ A;  2NTQ A;  2NTP A;  4XL9 A;  1IDK A;  4XON A;  3VMV A;  1K5C A;  1LM1 A;  1RU4 A;  1TYX A;  3PET A;  1O8K A;  4YEJ A;  4OJL A;  1QA1 A;  2QXZ A;  1DBG A;  2XC1 A;  5AMV A;  2NT9 A;  1CLW A;  2B0R A;  4XLC A;  1IB4 A;  2NST A;  2XTW A;  1HG8 A;  3NB2 A;  1QA2 A;  2BM4 A;  4OM9 A;  2UVF A;  1LLZ A;  2NSP A;  4U4B A;  4V02 C;  4XNF A;  3VST A;  4YZQ A;  2INV A;  2VJI A;  1EE6 A;  2J8I A;  4NK8 A;  4XKW A;  2VBK A;  2X85 A;  3ZPP A;  1WMR A;  4XMY A;  5JLV C;  1QRC A;  3WWG A;  2PYG A;  4W8R A;  1TYU A;  1KCC A;  3SUC A;  2X6W A;  4W8Q A;  2BM5 A;  4XKV A;  1OFM A;  4XLH A;  4YC5 A;  1OFE A;  3NAW A;  3EQN A;  2VFM A;  3BH7 B;  3VSU A;  3SZE A;  1O88 A;  5C1E A;  1KTW A;  1O8E A;  4NK6 A;  3ZSC A;  2O6W A;  1JRG A;  2VFP A;  3GQ7 A;  1EZG A;  1O8M A;  1OFL A;  2VJJ A;  4URR A;  2O0W A;  1JTA A;  1RWR A;  2XT4 A;  1XG2 A;  4XLF A;  4XLE A;  1TYW A;  2O0V A;  1NHC A;  3JUR A;  4YZ0 A;  1EA0 A;  3GRH A;  1O8G A;  1O8L A;  2NTB A;  1L1I A;  4XOT A;  1O8D A;  1O8J A;  4Z06 A;  5C1C A;  4XN3 A;  3BH6 B;  2X6X A;  2NZM A;  1IDJ A;  1HF2 A;  4MR0 A;  3GQ9 A;  1OOC A;  3RIQ A;  4OJ6 A;  4AVZ A;  1O8F A;  1KCD A;  1CZF A; 
#chains in the Genus database with same CATH homology
 1PXZ A;  1OGM X;  1RMG A;  2QY1 A;  3GQA A;  1VBL A;  4HWV A;  4MXN A;  4Z03 A;  4U49 A;  2O1D A;  2X3H A;  1OGO X;  4W8S A;  2QX3 A;  4OJO A;  2IQ7 A;  3B4N A;  4OZY A;  4C2L A;  4YEL A;  4XM3 A;  2O04 A;  2INU A;  4YZA A;  1PE9 A;  2ODL A;  2PEC A;  1X0C A;  4OJP A;  3EQO A;  1O8I A;  4OZZ A;  3LMW A;  1PLU A;  3GQ8 A;  3VSV A;  1IA5 A;  1QCX A;  3KRG A;  4EW9 A;  4XOR A;  4OJ5 A;  4Z05 A;  2VBM A;  3T9G A;  2X6Y A;  4XR6 A;  1QJV A;  2BSP A;  2O17 A;  1O8H A;  1BHE A;  4XOP A;  4PMH A;  2EWE A;  1H80 A;  2NT6 A;  2VBE A;  4I84 A;  1AIR A;  4YZX A;  4W8T A;  3B90 A;  4XN0 A;  3VMW A;  3UW0 A;  4XLA A;  2Z8G A;  4XQF A;  3B8Y A;  2PYH A;  1BN8 A;  1GQ8 A;  3FY3 A;  1DBO A;  4YEJ A;  2UVE A;  4XON A;  2NTQ A;  2NTP A;  4XL9 A;  1IDK A;  3VMV A;  1K5C A;  1RU4 A;  1O8K A;  4OJL A;  2QXZ A;  1DBG A;  5AMV A;  2NT9 A;  4XLC A;  1IB4 A;  2NST A;  1HG8 A;  4U4B A;  2UVF A;  2NSP A;  4XNF A;  3VST A;  4YZQ A;  2INV A;  2VJI A;  1EE6 A;  4NK8 A;  4XKW A;  2VBK A;  2X85 A;  3ZPP A;  1WMR A;  4XMY A;  3WWG A;  2PYG A;  4W8R A;  1KCC A;  3SUC A;  2X6W A;  4W8Q A;  4XKV A;  4XLH A;  1OFM A;  3EQN A;  3VSU A;  1O88 A;  5C1E A;  1KTW A;  1O8E A;  4NK6 A;  3ZSC A;  1JRG A;  3GQ7 A;  1O8M A;  2VJJ A;  1OFL A;  4URR A;  2O0W A;  1JTA A;  1RWR A;  1XG2 A;  4XLF A;  4XLE A;  2O0V A;  1NHC A;  3JUR A;  4YZ0 A;  3GRH A;  1O8G A;  1O8L A;  2NTB A;  4XOT A;  1O8J A;  1O8D A;  4Z06 A;  5C1C A;  4XN3 A;  2X6X A;  2NZM A;  1IDJ A;  4MR0 A;  4AVZ A;  3GQ9 A;  1OOC A;  4OJ6 A;  1O8F A;  1KCD A;  1CZF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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