1OFLA

Crystal structure of chondroitinase b complexed to dermatan sulfate hexasaccharide
Total Genus 185
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
481
structure length
481
Chain Sequence
EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
source organism Pedobacter heparinus
molecule tags Lyase
total genus 185
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oflA00
3B90A 4XLFA 4OJ5A 1O8DA 4U4BA 1IDKA 4OJ6A 4OJLA 2O0VA 5C1CA 4AVZA 4YEJA 1IDJA 2UVFA 1KCDA 2VBKA 3GQAA 1PLUA 1H80A 4XLCA 2VBMA 3JURA 1CZFA 3GQ8A 4OJPA 3EQNA 4XL9A 4I84A 1OFMA 2ODLA 3GRHA 1O8FA 3VMWA 4C2LA 1VBLA 1BHEA 1O8GA 1AIRA 3SUCA 1OFLA 3ZSCA 1KTWA 2Z8GA 4XLEA 4HWVA 1OGOX 2EWEA 2O17A 1K5CA 4PMHA 2X85A 1GQ8A 4YZXA 2IQ7A 4XQFA 2NSTA 2QX3A 4Z06A 4W8TA 1XG2A 3GQ9A 4XLAA 4XORA 4W8SA 4YZQA 2NZMA 1BN8A 1DBOA 1X0CA 2INVA 3UW0A 4XLHA 2X6YA 4XR6A 4W8QA 1RWRA 4XN3A 4MXNA 4XONA 4YZAA 1WMRA 3EQOA 2PYHA 4XM3A 1QJVA 2UVEA 3ZPPA 5C1EA 1RU4A 4URRA 1IB4A 2X6WA 2INUA 1O8JA 2NSPA 2O0WA 4XKVA 3VSUA 4W8RA 3KRGA 3WWGA 2PYGA 4XOPA 1O8HA 4XMYA 4OZYA 4Z03A 1OOCA 3VSTA 2QXZA 2NT9A 2BSPA 4YZ0A 1QCXA 3LMWA 5AMVA 3B8YA 4NK8A 1O8LA 1RMGA 4NK6A 1OGMX 1JRGA 2NTBA 4U49A 1JTAA 1IA5A 1O8EA 2NTQA 2NTPA 2PECA 4XOTA 1O8KA 2QY1A 2O04A 1O8IA 4XNFA 1KCCA 1O88A 2O1DA 4Z05A 4EW9A 3VSVA 4XKWA 1O8MA 2VJIA 3GQ7A 2X3HA 4MR0A 4XN0A 4OZZA 2NT6A 3T9GA 2X6XA 1NHCA 4OJOA 1EE6A 2VBEA 3VMVA 4YELA 1PE9A 3B4NA 3FY3A 1DBGA 2VJJA 1HG8A 1PXZA
chains in the Genus database with same CATH superfamily
2BM7A 3B90A 2B0RA 2QZAA 1O8DA 4OJ5A 4U4BA 4XLFA 2BM4A 1IDKA 1EA0A 1K8FA 4OJ6A 4OJLA 2O0VA 5C1CA 4AVZA 4YEJA 1IDJA 2UVFA 2VFMA 1DABA 2VFOA 2VBKA 5JMCB 1KCDA 1L1IA 3BH7B 3GQAA 3ML3A 1PLUA 1H80A 4XLCA 2VBMA 1TSPA 3JURA 3SQVA 1CZFA 2BM6A 3GQ8A 3PETA 3EQNA 4OJPA 3SZEA 3H09A 4XL9A 3TH0A 4I84A 1OFEA 5JLVC 1LLWA 1OFMA 1QRBA 1OFDA 2ODLA 1CLWA 3GRHA 4OPWA 1O8FA 3LJYA 4YC5A 3SY2A 3VMWA 4C2LA 1VBLA 1BHEA 4JRAC 1O8GA 1AIRA 3SUCA 1OFLA 3ZSCA 1KTWA 2Z8GA 4XLEA 2XT2A 4HWVA 3PSZA 1OGOX 2EWEA 1QA3A 2O17A 4YCQA 1K5CA 4PMHA 1QQ1A 2W7ZA 2X85A 1GQ8A 4YZXA 1QA2A 2IQ7A 4XQFA 2NSTA 2QX3A 4Z06A 4W8TA 1XG2A 3GQ9A 4XLAA 4XORA 4V02C 4W8SA 2IOUG 1K4ZA 4YZQA 3AK5A 2NZMA 1BN8A 2XT4A 3NB2A 1EZGA 1DBOA 2XTYA 3P4GA 1X0CA 2INVA 3UW0A 3BH6B 2BM5A 4XLHA 2X6YA 4XR6A 4W8QA 1RWRA 4XN3A 4MXNA 4XONA 4YZAA 4YFOA 1WMRA 2V5IA 2YUHA 2J8IA 2QYUA 4YEIA 3EQOA 2PYHA 4XM3A 1QJVA 2O6WA 2UVEA 3ZPPA 1WXRA 5C1EA 1RU4A 4URRA 1IB4A 2X6WA 2F3LA 2INUA 1O8JA 2NSPA 2O0WA 4XKVA 3VSUA 4W8RA 3KRGA 3WWGA 2XC1A 3DU1X 2PYGA 3LYCA 4XOPA 1O8HA 1TYXA 2G0YA 4OZYA 4XMYA 4Z03A 1OOCA 2XTXA 3VSTA 1LLZA 2QXZA 2NT9A 2BSPA 4YZ0A 1QCXA 1HF2A 3LMWA 3JX8A 5AMVA 3B8YA 4NK8A 1O8LA 1RMGA 4NK6A 1TYVA 1OGMX 2J8KA 4KH3A 1JRGA 1QA1A 2NTBA 4U49A 3RIQA 1JTAA 1IA5A 1O8EA 2NTQA 1TYWA 2NTPA 2PECA 3N90A 3PSSA 4XOTA 1O8KA 1TYUA 3N6ZA 2QY1A 1KQ5A 2O04A 3NAWA 1O8IA 4XNFA 1KCCA 5DNSA 1O88A 2O1DA 4Z05A 4EW9A 1QRCA 3VSVA 3SYJA 2VFQA 2VFNA 4XKWA 1O8MA 1LM1A 2VJIA 3GQ7A 2X3HA 4YDTA 4MR0A 4XN0A 4OZZA 2NT6A 3T9GA 2X6XA 1NHCA 2BX6A 4OJOA 1EE6A 2XTWA 2VBEA 3VMVA 4YELA 2VFPA 1PE9A 3B4NA 3FY3A 1DBGA 2VJJA 4OM9A 1HG8A 1PXZA
chains in the Genus database with same CATH topology
3B90A 4XLFA 4OJ5A 1O8DA 4U4BA 1IDKA 4OJ6A 4OJLA 2O0VA 5C1CA 4AVZA 4YEJA 1IDJA 2UVFA 1KCDA 2VBKA 3GQAA 1PLUA 1H80A 4XLCA 2VBMA 3JURA 1CZFA 3GQ8A 4OJPA 3EQNA 4XL9A 4I84A 1OFMA 2ODLA 3GRHA 1O8FA 3VMWA 4C2LA 1VBLA 1BHEA 1O8GA 1AIRA 3SUCA 1OFLA 3ZSCA 1KTWA 2Z8GA 4XLEA 4HWVA 1OGOX 2EWEA 2O17A 1K5CA 4PMHA 2X85A 1GQ8A 4YZXA 2IQ7A 4XQFA 2NSTA 2QX3A 4Z06A 4W8TA 1XG2A 3GQ9A 4XLAA 4XORA 4W8SA 4YZQA 2NZMA 1BN8A 1DBOA 1X0CA 2INVA 3UW0A 4XLHA 2X6YA 4XR6A 4W8QA 1RWRA 4XN3A 4MXNA 4XONA 4YZAA 1WMRA 3EQOA 2PYHA 4XM3A 1QJVA 2UVEA 3ZPPA 5C1EA 1RU4A 4URRA 1IB4A 2X6WA 2INUA 1O8JA 2NSPA 2O0WA 4XKVA 3VSUA 4W8RA 3KRGA 3WWGA 2PYGA 4XOPA 1O8HA 4XMYA 4OZYA 4Z03A 1OOCA 3VSTA 2QXZA 2NT9A 2BSPA 4YZ0A 1QCXA 3LMWA 5AMVA 3B8YA 4NK8A 1O8LA 1RMGA 4NK6A 1OGMX 1JRGA 2NTBA 4U49A 1JTAA 1IA5A 1O8EA 2NTQA 2NTPA 2PECA 4XOTA 1O8KA 2QY1A 2O04A 1O8IA 4XNFA 1KCCA 1O88A 2O1DA 4Z05A 4EW9A 3VSVA 4XKWA 1O8MA 2VJIA 3GQ7A 2X3HA 4MR0A 4XN0A 4OZZA 2NT6A 3T9GA 2X6XA 1NHCA 4OJOA 1EE6A 2VBEA 3VMVA 4YELA 1PE9A 3B4NA 3FY3A 1DBGA 2VJJA 1HG8A 1PXZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B90 A;  4XLF A;  4OJ5 A;  1O8D A;  4U4B A;  1IDK A;  4OJ6 A;  4OJL A;  2O0V A;  5C1C A;  4AVZ A;  4YEJ A;  1IDJ A;  2UVF A;  1KCD A;  2VBK A;  3GQA A;  1PLU A;  1H80 A;  4XLC A;  2VBM A;  3JUR A;  1CZF A;  3GQ8 A;  4OJP A;  3EQN A;  4XL9 A;  4I84 A;  1OFM A;  2ODL A;  3GRH A;  1O8F A;  3VMW A;  4C2L A;  1VBL A;  1BHE A;  1O8G A;  1AIR A;  3SUC A;  1OFL A;  3ZSC A;  1KTW A;  2Z8G A;  4XLE A;  4HWV A;  1OGO X;  2EWE A;  2O17 A;  1K5C A;  4PMH A;  2X85 A;  1GQ8 A;  4YZX A;  2IQ7 A;  4XQF A;  2NST A;  2QX3 A;  4Z06 A;  4W8T A;  1XG2 A;  3GQ9 A;  4XLA A;  4XOR A;  4W8S A;  4YZQ A;  2NZM A;  1BN8 A;  1DBO A;  1X0C A;  2INV A;  3UW0 A;  4XLH A;  2X6Y A;  4XR6 A;  4W8Q A;  1RWR A;  4XN3 A;  4MXN A;  4XON A;  4YZA A;  1WMR A;  3EQO A;  2PYH A;  4XM3 A;  1QJV A;  2UVE A;  3ZPP A;  5C1E A;  1RU4 A;  4URR A;  1IB4 A;  2X6W A;  2INU A;  1O8J A;  2NSP A;  2O0W A;  4XKV A;  3VSU A;  4W8R A;  3KRG A;  3WWG A;  2PYG A;  4XOP A;  1O8H A;  4XMY A;  4OZY A;  4Z03 A;  1OOC A;  3VST A;  2QXZ A;  2NT9 A;  2BSP A;  4YZ0 A;  1QCX A;  3LMW A;  5AMV A;  3B8Y A;  4NK8 A;  1O8L A;  1RMG A;  4NK6 A;  1OGM X;  1JRG A;  2NTB A;  4U49 A;  1JTA A;  1IA5 A;  1O8E A;  2NTQ A;  2NTP A;  2PEC A;  4XOT A;  1O8K A;  2QY1 A;  2O04 A;  1O8I A;  4XNF A;  1KCC A;  1O88 A;  2O1D A;  4Z05 A;  4EW9 A;  3VSV A;  4XKW A;  1O8M A;  2VJI A;  3GQ7 A;  2X3H A;  4MR0 A;  4XN0 A;  4OZZ A;  2NT6 A;  3T9G A;  2X6X A;  1NHC A;  4OJO A;  1EE6 A;  2VBE A;  3VMV A;  4YEL A;  1PE9 A;  3B4N A;  3FY3 A;  1DBG A;  2VJJ A;  1HG8 A;  1PXZ A; 
#chains in the Genus database with same CATH topology
 2BM7 A;  3B90 A;  2B0R A;  2QZA A;  1O8D A;  4OJ5 A;  4U4B A;  4XLF A;  2BM4 A;  1IDK A;  1EA0 A;  1K8F A;  4OJ6 A;  4OJL A;  2O0V A;  5C1C A;  4AVZ A;  4YEJ A;  1IDJ A;  2UVF A;  2VFM A;  1DAB A;  2VFO A;  2VBK A;  5JMC B;  1KCD A;  1L1I A;  3BH7 B;  3GQA A;  3ML3 A;  1PLU A;  1H80 A;  4XLC A;  2VBM A;  1TSP A;  3JUR A;  3SQV A;  1CZF A;  2BM6 A;  3GQ8 A;  3PET A;  3EQN A;  4OJP A;  3SZE A;  3H09 A;  4XL9 A;  3TH0 A;  4I84 A;  1OFE A;  5JLV C;  1LLW A;  1OFM A;  1QRB A;  1OFD A;  2ODL A;  1CLW A;  3GRH A;  4OPW A;  1O8F A;  3LJY A;  4YC5 A;  3SY2 A;  3VMW A;  4C2L A;  1VBL A;  1BHE A;  4JRA C;  1O8G A;  1AIR A;  3SUC A;  1OFL A;  3ZSC A;  1KTW A;  2Z8G A;  4XLE A;  2XT2 A;  4HWV A;  3PSZ A;  1OGO X;  2EWE A;  1QA3 A;  2O17 A;  4YCQ A;  1K5C A;  4PMH A;  1QQ1 A;  2W7Z A;  2X85 A;  1GQ8 A;  4YZX A;  1QA2 A;  2IQ7 A;  4XQF A;  2NST A;  2QX3 A;  4Z06 A;  4W8T A;  1XG2 A;  3GQ9 A;  4XLA A;  4XOR A;  4V02 C;  4W8S A;  2IOU G;  1K4Z A;  4YZQ A;  3AK5 A;  2NZM A;  1BN8 A;  2XT4 A;  3NB2 A;  1EZG A;  1DBO A;  2XTY A;  3P4G A;  1X0C A;  2INV A;  3UW0 A;  3BH6 B;  2BM5 A;  4XLH A;  2X6Y A;  4XR6 A;  4W8Q A;  1RWR A;  4XN3 A;  4MXN A;  4XON A;  4YZA A;  4YFO A;  1WMR A;  2V5I A;  2YUH A;  2J8I A;  2QYU A;  4YEI A;  3EQO A;  2PYH A;  4XM3 A;  1QJV A;  2O6W A;  2UVE A;  3ZPP A;  1WXR A;  5C1E A;  1RU4 A;  4URR A;  1IB4 A;  2X6W A;  2F3L A;  2INU A;  1O8J A;  2NSP A;  2O0W A;  4XKV A;  3VSU A;  4W8R A;  3KRG A;  3WWG A;  2XC1 A;  3DU1 X;  2PYG A;  3LYC A;  4XOP A;  1O8H A;  1TYX A;  2G0Y A;  4OZY A;  4XMY A;  4Z03 A;  1OOC A;  2XTX A;  3VST A;  1LLZ A;  2QXZ A;  2NT9 A;  2BSP A;  4YZ0 A;  1QCX A;  1HF2 A;  3LMW A;  3JX8 A;  5AMV A;  3B8Y A;  4NK8 A;  1O8L A;  1RMG A;  4NK6 A;  1TYV A;  1OGM X;  2J8K A;  4KH3 A;  1JRG A;  1QA1 A;  2NTB A;  4U49 A;  3RIQ A;  1JTA A;  1IA5 A;  1O8E A;  2NTQ A;  1TYW A;  2NTP A;  2PEC A;  3N90 A;  3PSS A;  4XOT A;  1O8K A;  1TYU A;  3N6Z A;  2QY1 A;  1KQ5 A;  2O04 A;  3NAW A;  1O8I A;  4XNF A;  1KCC A;  5DNS A;  1O88 A;  2O1D A;  4Z05 A;  4EW9 A;  1QRC A;  3VSV A;  3SYJ A;  2VFQ A;  2VFN A;  4XKW A;  1O8M A;  1LM1 A;  2VJI A;  3GQ7 A;  2X3H A;  4YDT A;  4MR0 A;  4XN0 A;  4OZZ A;  2NT6 A;  3T9G A;  2X6X A;  1NHC A;  2BX6 A;  4OJO A;  1EE6 A;  2XTW A;  2VBE A;  3VMV A;  4YEL A;  2VFP A;  1PE9 A;  3B4N A;  3FY3 A;  1DBG A;  2VJJ A;  4OM9 A;  1HG8 A;  1PXZ A; 
#chains in the Genus database with same CATH homology
 3B90 A;  4XLF A;  4OJ5 A;  1O8D A;  4U4B A;  1IDK A;  4OJ6 A;  4OJL A;  2O0V A;  5C1C A;  4AVZ A;  4YEJ A;  1IDJ A;  2UVF A;  1KCD A;  2VBK A;  3GQA A;  1PLU A;  1H80 A;  4XLC A;  2VBM A;  3JUR A;  1CZF A;  3GQ8 A;  4OJP A;  3EQN A;  4XL9 A;  4I84 A;  1OFM A;  2ODL A;  3GRH A;  1O8F A;  3VMW A;  4C2L A;  1VBL A;  1BHE A;  1O8G A;  1AIR A;  3SUC A;  1OFL A;  3ZSC A;  1KTW A;  2Z8G A;  4XLE A;  4HWV A;  1OGO X;  2EWE A;  2O17 A;  1K5C A;  4PMH A;  2X85 A;  1GQ8 A;  4YZX A;  2IQ7 A;  4XQF A;  2NST A;  2QX3 A;  4Z06 A;  4W8T A;  1XG2 A;  3GQ9 A;  4XLA A;  4XOR A;  4W8S A;  4YZQ A;  2NZM A;  1BN8 A;  1DBO A;  1X0C A;  2INV A;  3UW0 A;  4XLH A;  2X6Y A;  4XR6 A;  4W8Q A;  1RWR A;  4XN3 A;  4MXN A;  4XON A;  4YZA A;  1WMR A;  3EQO A;  2PYH A;  4XM3 A;  1QJV A;  2UVE A;  3ZPP A;  5C1E A;  1RU4 A;  4URR A;  1IB4 A;  2X6W A;  2INU A;  1O8J A;  2NSP A;  2O0W A;  4XKV A;  3VSU A;  4W8R A;  3KRG A;  3WWG A;  2PYG A;  4XOP A;  1O8H A;  4XMY A;  4OZY A;  4Z03 A;  1OOC A;  3VST A;  2QXZ A;  2NT9 A;  2BSP A;  4YZ0 A;  1QCX A;  3LMW A;  5AMV A;  3B8Y A;  4NK8 A;  1O8L A;  1RMG A;  4NK6 A;  1OGM X;  1JRG A;  2NTB A;  4U49 A;  1JTA A;  1IA5 A;  1O8E A;  2NTQ A;  2NTP A;  2PEC A;  4XOT A;  1O8K A;  2QY1 A;  2O04 A;  1O8I A;  4XNF A;  1KCC A;  1O88 A;  2O1D A;  4Z05 A;  4EW9 A;  3VSV A;  4XKW A;  1O8M A;  2VJI A;  3GQ7 A;  2X3H A;  4MR0 A;  4XN0 A;  4OZZ A;  2NT6 A;  3T9G A;  2X6X A;  1NHC A;  4OJO A;  1EE6 A;  2VBE A;  3VMV A;  4YEL A;  1PE9 A;  3B4N A;  3FY3 A;  1DBG A;  2VJJ A;  1HG8 A;  1PXZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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