1OFLA

Crystal structure of chondroitinase b complexed to dermatan sulfate hexasaccharide
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
481
structure length
481
Chain Sequence
b'EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
source organism Pedobacter heparinus
molecule tags Lyase
total genus 185
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oflA00
1O8LA 2NSPA 3GQ9A 3GQ7A 5C1CA 4XLHA 2PECA 2X3HA 4OJOA 2NZMA 1O8GA 1PLUA 3VSUA 1DBGA 4OJPA 4W8RA 4XKVA 1DBOA 4XKWA 4YZXA 2X6YA 1RMGA 4XNFA 2NSTA 3JURA 4XOPA 3LMWA 1OGOX 1O8JA 2QX3A 2O04A 4XLAA 4AVZA 4MXNA 4YZQA 4C2LA 1BHEA 2PYGA 1QCXA 4XQFA 4HWVA 4YELA 4XONA 5C1EA 1HG8A 4XMYA 2ODLA 2X6XA 4URRA 1OFMA 2O0WA 4XN0A 4XL9A 1QJVA 4OZYA 3GQ8A 3SUCA 4U49A 4Z03A 4YEJA 1O8FA 2O17A 3FY3A 3UW0A 3VSTA 1BN8A 2NT9A 4W8TA 3KRGA 2VBKA 1NHCA 4NK8A 4YZ0A 1AIRA 1PE9A 3GRHA 4W8SA 4MR0A 4PMHA 2PYHA 2NTBA 2EWEA 2O1DA 4XOTA 1PXZA 2QXZA 1O8DA 2X85A 4U4BA 2NTPA 2VJIA 4XORA 2Z8GA 3B90A 3ZSCA 4OJ6A 2O0VA 1VBLA 1EE6A 1IDKA 4Z06A 1O8KA 1K5CA 1IDJA 3B4NA 2VBEA 2VBMA 2QY1A 4OJ5A 4XN3A 1X0CA 2NT6A 3WWGA 1RU4A 4Z05A 4XM3A 4YZAA 4XR6A 1GQ8A 1O8HA 1O8IA 5AMVA 1IB4A 3VSVA 4XLCA 4OJLA 4I84A 1O88A 3T9GA 3VMWA 4NK6A 1OGMX 1O8MA 3EQOA 1OFLA 1JRGA 1IA5A 4OZZA 3VMVA 3EQNA 1JTAA 4EW9A 2NTQA 2IQ7A 1KCDA 3ZPPA 4W8QA 2UVFA 1KTWA 1WMRA 1O8EA 1KCCA 3B8YA 2INVA 1RWRA 2UVEA 3GQAA 2BSPA 4XLEA 1OOCA 1CZFA 2VJJA 2X6WA 1H80A 2INUA 4XLFA 1XG2A
chains in the Genus database with same CATH superfamily
1O8LA 2NSPA 3GQ9A 3GQ7A 3DU1X 5C1CA 4XLHA 2PECA 4YCQA 2X3HA 4OJOA 1OFDA 1WXRA 2NZMA 1O8GA 1PLUA 2B0RA 3VSUA 1DBGA 4OJPA 4W8RA 4XKVA 1DBOA 4XKWA 4YZXA 2IOUG 2QYUA 3PSZA 2W7ZA 2X6YA 1RMGA 4YFOA 3SZEA 2VFOA 2NSTA 4XNFA 3JURA 3P4GA 4XOPA 3LMWA 1QA1A 3NAWA 1OGOX 1L1IA 1TYXA 2F3LA 1O8JA 2QX3A 3SY2A 3SYJA 3N6ZA 1TYUA 1EZGA 1QRCA 2O04A 3BH7B 4XLAA 4MXNA 1TYWA 4AVZA 4YZQA 1QA3A 3SQVA 4C2LA 1BHEA 2QZAA 2PYGA 1K4ZA 1EA0A 3ML3A 1QA2A 1QCXA 4XQFA 4HWVA 4YELA 4XONA 2BM5A 5C1EA 2O6WA 1LM1A 5JLVC 1HG8A 2XC1A 4XMYA 2ODLA 3H09A 2X6XA 4URRA 1OFMA 2O0WA 2XTYA 4XN0A 4XL9A 1QJVA 4OZYA 2BM4A 2J8KA 3GQ8A 3SUCA 4U49A 3N90A 4Z03A 3BH6B 4YEJA 1O8FA 2O17A 3FY3A 2G0YA 3UW0A 3VSTA 1BN8A 1DABA 1TSPA 2NT9A 4W8TA 3KRGA 1K8FA 2VBKA 4KH3A 1NHCA 4NK8A 1HF2A 1TYVA 1AIRA 1PE9A 2XTXA 3GRHA 4W8SA 4YZ0A 4MR0A 3LYCA 4PMHA 2PYHA 2NTBA 2EWEA 2VFNA 5JMCB 2O1DA 4XOTA 1PXZA 2QXZA 3PSSA 1O8DA 2X85A 4YDTA 2XT4A 4U4BA 2NTPA 2YUHA 2VJIA 4XORA 2VFPA 2Z8GA 3B90A 3ZSCA 4OJ6A 2O0VA 2V5IA 1VBLA 4YC5A 1EE6A 1IDKA 4Z06A 1O8KA 5DNSA 2VFMA 1K5CA 1IDJA 3B4NA 2VBEA 2VBMA 2QY1A 4V02C 2BM7A 4OJ5A 4XN3A 1X0CA 2NT6A 3TH0A 3PETA 3WWGA 1RU4A 4Z05A 4XM3A 4YZAA 4XR6A 1GQ8A 1O8HA 1O8IA 5AMVA 2XTWA 1IB4A 3AK5A 3VSVA 4XLCA 4OJLA 4I84A 1O88A 3T9GA 3LJYA 3VMWA 4OPWA 4NK6A 1OGMX 1O8MA 3EQOA 1OFLA 2BX6A 1JRGA 1IA5A 4OZZA 3VMVA 3EQNA 1JTAA 4EW9A 2NTQA 2IQ7A 1KCDA 3ZPPA 4W8QA 2UVFA 1KTWA 3NB2A 1WMRA 1O8EA 1KCCA 3B8YA 3JX8A 1QRBA 2INVA 1RWRA 2UVEA 1CLWA 3GQAA 1QQ1A 1KQ5A 2BSPA 4YEIA 1LLZA 4XLEA 1OOCA 1LLWA 1CZFA 4JRAC 3RIQA 2VJJA 2VFQA 1H80A 2X6WA 2INUA 4OM9A 2J8IA 1OFEA 4XLFA 1XG2A 2BM6A 2XT2A
chains in the Genus database with same CATH topology
1O8LA 2NSPA 3GQ9A 3GQ7A 5C1CA 4XLHA 2PECA 2X3HA 4OJOA 2NZMA 1O8GA 1PLUA 3VSUA 1DBGA 4OJPA 4W8RA 4XKVA 1DBOA 4XKWA 4YZXA 2X6YA 1RMGA 4XNFA 2NSTA 3JURA 4XOPA 3LMWA 1OGOX 1O8JA 2QX3A 2O04A 4XLAA 4AVZA 4MXNA 4YZQA 4C2LA 1BHEA 2PYGA 1QCXA 4XQFA 4HWVA 4YELA 4XONA 5C1EA 1HG8A 4XMYA 2ODLA 2X6XA 4URRA 1OFMA 2O0WA 4XN0A 4XL9A 1QJVA 4OZYA 3GQ8A 3SUCA 4U49A 4Z03A 4YEJA 1O8FA 2O17A 3FY3A 3UW0A 3VSTA 1BN8A 2NT9A 4W8TA 3KRGA 2VBKA 1NHCA 4NK8A 4YZ0A 1AIRA 1PE9A 3GRHA 4W8SA 4MR0A 4PMHA 2PYHA 2NTBA 2EWEA 2O1DA 4XOTA 1PXZA 2QXZA 1O8DA 2X85A 4U4BA 2NTPA 2VJIA 4XORA 2Z8GA 3B90A 3ZSCA 4OJ6A 2O0VA 1VBLA 1EE6A 1IDKA 4Z06A 1O8KA 1K5CA 1IDJA 3B4NA 2VBEA 2VBMA 2QY1A 4OJ5A 4XN3A 1X0CA 2NT6A 3WWGA 1RU4A 4Z05A 4XM3A 4YZAA 4XR6A 1GQ8A 1O8HA 1O8IA 5AMVA 1IB4A 3VSVA 4XLCA 4OJLA 4I84A 1O88A 3T9GA 3VMWA 4NK6A 1OGMX 1O8MA 3EQOA 1OFLA 1JRGA 1IA5A 4OZZA 3VMVA 3EQNA 1JTAA 4EW9A 2NTQA 2IQ7A 1KCDA 3ZPPA 4W8QA 2UVFA 1KTWA 1WMRA 1O8EA 1KCCA 3B8YA 2INVA 1RWRA 2UVEA 3GQAA 2BSPA 4XLEA 1OOCA 1CZFA 2VJJA 2X6WA 1H80A 2INUA 4XLFA 1XG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8L A;  2NSP A;  3GQ9 A;  3GQ7 A;  5C1C A;  4XLH A;  2PEC A;  2X3H A;  4OJO A;  2NZM A;  1O8G A;  1PLU A;  3VSU A;  1DBG A;  4OJP A;  4W8R A;  4XKV A;  1DBO A;  4XKW A;  4YZX A;  2X6Y A;  1RMG A;  4XNF A;  2NST A;  3JUR A;  4XOP A;  3LMW A;  1OGO X;  1O8J A;  2QX3 A;  2O04 A;  4XLA A;  4AVZ A;  4MXN A;  4YZQ A;  4C2L A;  1BHE A;  2PYG A;  1QCX A;  4XQF A;  4HWV A;  4YEL A;  4XON A;  5C1E A;  1HG8 A;  4XMY A;  2ODL A;  2X6X A;  4URR A;  1OFM A;  2O0W A;  4XN0 A;  4XL9 A;  1QJV A;  4OZY A;  3GQ8 A;  3SUC A;  4U49 A;  4Z03 A;  4YEJ A;  1O8F A;  2O17 A;  3FY3 A;  3UW0 A;  3VST A;  1BN8 A;  2NT9 A;  4W8T A;  3KRG A;  2VBK A;  1NHC A;  4NK8 A;  4YZ0 A;  1AIR A;  1PE9 A;  3GRH A;  4W8S A;  4MR0 A;  4PMH A;  2PYH A;  2NTB A;  2EWE A;  2O1D A;  4XOT A;  1PXZ A;  2QXZ A;  1O8D A;  2X85 A;  4U4B A;  2NTP A;  2VJI A;  4XOR A;  2Z8G A;  3B90 A;  3ZSC A;  4OJ6 A;  2O0V A;  1VBL A;  1EE6 A;  1IDK A;  4Z06 A;  1O8K A;  1K5C A;  1IDJ A;  3B4N A;  2VBE A;  2VBM A;  2QY1 A;  4OJ5 A;  4XN3 A;  1X0C A;  2NT6 A;  3WWG A;  1RU4 A;  4Z05 A;  4XM3 A;  4YZA A;  4XR6 A;  1GQ8 A;  1O8H A;  1O8I A;  5AMV A;  1IB4 A;  3VSV A;  4XLC A;  4OJL A;  4I84 A;  1O88 A;  3T9G A;  3VMW A;  4NK6 A;  1OGM X;  1O8M A;  3EQO A;  1OFL A;  1JRG A;  1IA5 A;  4OZZ A;  3VMV A;  3EQN A;  1JTA A;  4EW9 A;  2NTQ A;  2IQ7 A;  1KCD A;  3ZPP A;  4W8Q A;  2UVF A;  1KTW A;  1WMR A;  1O8E A;  1KCC A;  3B8Y A;  2INV A;  1RWR A;  2UVE A;  3GQA A;  2BSP A;  4XLE A;  1OOC A;  1CZF A;  2VJJ A;  2X6W A;  1H80 A;  2INU A;  4XLF A;  1XG2 A; 
#chains in the Genus database with same CATH topology
 1O8L A;  2NSP A;  3GQ9 A;  3GQ7 A;  3DU1 X;  5C1C A;  4XLH A;  2PEC A;  4YCQ A;  2X3H A;  4OJO A;  1OFD A;  1WXR A;  2NZM A;  1O8G A;  1PLU A;  2B0R A;  3VSU A;  1DBG A;  4OJP A;  4W8R A;  4XKV A;  1DBO A;  4XKW A;  4YZX A;  2IOU G;  2QYU A;  3PSZ A;  2W7Z A;  2X6Y A;  1RMG A;  4YFO A;  3SZE A;  2VFO A;  2NST A;  4XNF A;  3JUR A;  3P4G A;  4XOP A;  3LMW A;  1QA1 A;  3NAW A;  1OGO X;  1L1I A;  1TYX A;  2F3L A;  1O8J A;  2QX3 A;  3SY2 A;  3SYJ A;  3N6Z A;  1TYU A;  1EZG A;  1QRC A;  2O04 A;  3BH7 B;  4XLA A;  4MXN A;  1TYW A;  4AVZ A;  4YZQ A;  1QA3 A;  3SQV A;  4C2L A;  1BHE A;  2QZA A;  2PYG A;  1K4Z A;  1EA0 A;  3ML3 A;  1QA2 A;  1QCX A;  4XQF A;  4HWV A;  4YEL A;  4XON A;  2BM5 A;  5C1E A;  2O6W A;  1LM1 A;  5JLV C;  1HG8 A;  2XC1 A;  4XMY A;  2ODL A;  3H09 A;  2X6X A;  4URR A;  1OFM A;  2O0W A;  2XTY A;  4XN0 A;  4XL9 A;  1QJV A;  4OZY A;  2BM4 A;  2J8K A;  3GQ8 A;  3SUC A;  4U49 A;  3N90 A;  4Z03 A;  3BH6 B;  4YEJ A;  1O8F A;  2O17 A;  3FY3 A;  2G0Y A;  3UW0 A;  3VST A;  1BN8 A;  1DAB A;  1TSP A;  2NT9 A;  4W8T A;  3KRG A;  1K8F A;  2VBK A;  4KH3 A;  1NHC A;  4NK8 A;  1HF2 A;  1TYV A;  1AIR A;  1PE9 A;  2XTX A;  3GRH A;  4W8S A;  4YZ0 A;  4MR0 A;  3LYC A;  4PMH A;  2PYH A;  2NTB A;  2EWE A;  2VFN A;  5JMC B;  2O1D A;  4XOT A;  1PXZ A;  2QXZ A;  3PSS A;  1O8D A;  2X85 A;  4YDT A;  2XT4 A;  4U4B A;  2NTP A;  2YUH A;  2VJI A;  4XOR A;  2VFP A;  2Z8G A;  3B90 A;  3ZSC A;  4OJ6 A;  2O0V A;  2V5I A;  1VBL A;  4YC5 A;  1EE6 A;  1IDK A;  4Z06 A;  1O8K A;  5DNS A;  2VFM A;  1K5C A;  1IDJ A;  3B4N A;  2VBE A;  2VBM A;  2QY1 A;  4V02 C;  2BM7 A;  4OJ5 A;  4XN3 A;  1X0C A;  2NT6 A;  3TH0 A;  3PET A;  3WWG A;  1RU4 A;  4Z05 A;  4XM3 A;  4YZA A;  4XR6 A;  1GQ8 A;  1O8H A;  1O8I A;  5AMV A;  2XTW A;  1IB4 A;  3AK5 A;  3VSV A;  4XLC A;  4OJL A;  4I84 A;  1O88 A;  3T9G A;  3LJY A;  3VMW A;  4OPW A;  4NK6 A;  1OGM X;  1O8M A;  3EQO A;  1OFL A;  2BX6 A;  1JRG A;  1IA5 A;  4OZZ A;  3VMV A;  3EQN A;  1JTA A;  4EW9 A;  2NTQ A;  2IQ7 A;  1KCD A;  3ZPP A;  4W8Q A;  2UVF A;  1KTW A;  3NB2 A;  1WMR A;  1O8E A;  1KCC A;  3B8Y A;  3JX8 A;  1QRB A;  2INV A;  1RWR A;  2UVE A;  1CLW A;  3GQA A;  1QQ1 A;  1KQ5 A;  2BSP A;  4YEI A;  1LLZ A;  4XLE A;  1OOC A;  1LLW A;  1CZF A;  4JRA C;  3RIQ A;  2VJJ A;  2VFQ A;  1H80 A;  2X6W A;  2INU A;  4OM9 A;  2J8I A;  1OFE A;  4XLF A;  1XG2 A;  2BM6 A;  2XT2 A; 
#chains in the Genus database with same CATH homology
 1O8L A;  2NSP A;  3GQ9 A;  3GQ7 A;  5C1C A;  4XLH A;  2PEC A;  2X3H A;  4OJO A;  2NZM A;  1O8G A;  1PLU A;  3VSU A;  1DBG A;  4OJP A;  4W8R A;  4XKV A;  1DBO A;  4XKW A;  4YZX A;  2X6Y A;  1RMG A;  4XNF A;  2NST A;  3JUR A;  4XOP A;  3LMW A;  1OGO X;  1O8J A;  2QX3 A;  2O04 A;  4XLA A;  4AVZ A;  4MXN A;  4YZQ A;  4C2L A;  1BHE A;  2PYG A;  1QCX A;  4XQF A;  4HWV A;  4YEL A;  4XON A;  5C1E A;  1HG8 A;  4XMY A;  2ODL A;  2X6X A;  4URR A;  1OFM A;  2O0W A;  4XN0 A;  4XL9 A;  1QJV A;  4OZY A;  3GQ8 A;  3SUC A;  4U49 A;  4Z03 A;  4YEJ A;  1O8F A;  2O17 A;  3FY3 A;  3UW0 A;  3VST A;  1BN8 A;  2NT9 A;  4W8T A;  3KRG A;  2VBK A;  1NHC A;  4NK8 A;  4YZ0 A;  1AIR A;  1PE9 A;  3GRH A;  4W8S A;  4MR0 A;  4PMH A;  2PYH A;  2NTB A;  2EWE A;  2O1D A;  4XOT A;  1PXZ A;  2QXZ A;  1O8D A;  2X85 A;  4U4B A;  2NTP A;  2VJI A;  4XOR A;  2Z8G A;  3B90 A;  3ZSC A;  4OJ6 A;  2O0V A;  1VBL A;  1EE6 A;  1IDK A;  4Z06 A;  1O8K A;  1K5C A;  1IDJ A;  3B4N A;  2VBE A;  2VBM A;  2QY1 A;  4OJ5 A;  4XN3 A;  1X0C A;  2NT6 A;  3WWG A;  1RU4 A;  4Z05 A;  4XM3 A;  4YZA A;  4XR6 A;  1GQ8 A;  1O8H A;  1O8I A;  5AMV A;  1IB4 A;  3VSV A;  4XLC A;  4OJL A;  4I84 A;  1O88 A;  3T9G A;  3VMW A;  4NK6 A;  1OGM X;  1O8M A;  3EQO A;  1OFL A;  1JRG A;  1IA5 A;  4OZZ A;  3VMV A;  3EQN A;  1JTA A;  4EW9 A;  2NTQ A;  2IQ7 A;  1KCD A;  3ZPP A;  4W8Q A;  2UVF A;  1KTW A;  1WMR A;  1O8E A;  1KCC A;  3B8Y A;  2INV A;  1RWR A;  2UVE A;  3GQA A;  2BSP A;  4XLE A;  1OOC A;  1CZF A;  2VJJ A;  2X6W A;  1H80 A;  2INU A;  4XLF A;  1XG2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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