1OFLA

Crystal structure of chondroitinase b complexed to dermatan sulfate hexasaccharide
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
481
structure length
481
Chain Sequence
EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
pubmed doi rcsb
source organism Pedobacter heparinus
molecule tags Lyase
molecule keywords CHONDROITINASE B
total genus 185
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 2003-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oflA00
3B8YA 3EQNA 4MR0A 1O8DA 1O8LA 2NTBA 4XOPA 2VJIA 4OJ6A 3GQ8A 4EW9A 2O0WA 4PMHA 2X6YA 1K5CA 1IDKA 3GQAA 2EWEA 2INUA 4OJ5A 3VMVA 2NSPA 3GRHA 1BN8A 2O04A 1O8KA 3VSTA 4YEJA 1IDJA 1QJVA 1O8HA 4U49A 3ZSCA 2O0VA 3GQ9A 4W8SA 4OJPA 4Z05A 3B4NA 4W8QA 4XONA 1JTAA 4XL9A 1PXZA 1X0CA 5C1CA 1KCDA 4XOTA 1AIRA 3T9GA 4XN3A 1EE6A 1DBGA 4NK6A 1JRGA 1OGOX 4OJOA 1WMRA 4XLCA 4XLEA 4YZAA 3FY3A 1XG2A 4AVZA 1PLUA 2ODLA 3VSUA 4URRA 4XQFA 3VMWA 4YZ0A 3LMWA 2X3HA 2NT6A 1OFLA 2NZMA 3B90A 3ZPPA 2O17A 4C2LA 4OZYA 4XNFA 1RU4A 2NT9A 4W8TA 4XLAA 4XMYA 1BHEA 4XN0A 2BSPA 2IQ7A 4XLHA 3JURA 1QCXA 1IB4A 4Z06A 4HWVA 2X6WA 1O8JA 2PYGA 2INVA 2QX3A 2NTPA 1O8GA 4U4BA 1O8FA 2X85A 2PECA 4I84A 1KTWA 2UVEA 4W8RA 2QY1A 4MXNA 4Z03A 4YZQA 1DBOA 1HG8A 4YZXA 3KRGA 5C1EA 1NHCA 4XLFA 1O8EA 1PE9A 2VBKA 4OJLA 2NTQA 1RMGA 3VSVA 2Z8GA 4XR6A 1IA5A 2QXZA 1O8IA 2O1DA 2PYHA 2VJJA 2VBMA 4NK8A 5AMVA 4OZZA 3UW0A 1H80A 2UVFA 3GQ7A 1KCCA 4YELA 2X6XA 4XM3A 1OGMX 4XKWA 3WWGA 1GQ8A 1RWRA 1OOCA 1VBLA 2NSTA 3SUCA 1O88A 2VBEA 1O8MA 4XORA 4XKVA 1OFMA 1CZFA 3EQOA
chains in the Genus database with same CATH superfamily
3B8YA 3EQNA 4MR0A 3TH0A 1O8DA 1O8LA 2NTBA 4XOPA 2F3LA 5DNSA 1K4ZA 4YCQA 1QRBA 2VJIA 4OJ6A 3GQ8A 4EW9A 2O0WA 3PETA 4PMHA 2X6YA 1K5CA 1TYXA 1IDKA 3GQAA 2EWEA 1QRCA 2INUA 2VFMA 4OJ5A 3VMVA 2NSPA 2VFOA 2XTXA 3GRHA 1BN8A 1OFEA 2O04A 1QA2A 1O8KA 3VSTA 4YEJA 1IDJA 3N90A 1QJVA 3DU1X 2XT4A 1O8HA 4OM9A 4U49A 3ZSCA 2O0VA 3GQ9A 4W8SA 2BM7A 4OJPA 4Z05A 3B4NA 4W8QA 3SYJA 4XONA 1JTAA 2BM4A 1PXZA 1X0CA 4XL9A 5C1CA 1KCDA 4XOTA 1AIRA 3T9GA 4XN3A 1EE6A 1DBGA 4NK6A 1JRGA 1OGOX 4KH3A 4OJOA 1WMRA 4XLCA 1EZGA 4XLEA 4YC5A 3BH6B 2G0YA 3LJYA 4YZAA 1LLWA 4V02C 1CLWA 3JX8A 3FY3A 1XG2A 4AVZA 1PLUA 2ODLA 3VSUA 3PSZA 4URRA 4XQFA 3VMWA 4OPWA 4YZ0A 3LMWA 4YDTA 2X3HA 2NT6A 3SZEA 1OFLA 2NZMA 3B90A 3ZPPA 1EA0A 2O17A 3AK5A 4C2LA 2O6WA 1DABA 4OZYA 5JLVC 2J8IA 4XNFA 3BH7B 1OFDA 1RU4A 2NT9A 4W8TA 1LLZA 3SQVA 3H09A 2XT2A 4XLAA 4XMYA 1BHEA 4XN0A 3SY2A 2BSPA 2IQ7A 2YUHA 4XLHA 3JURA 2VFPA 1QCXA 1IB4A 2VFNA 4HWVA 4Z06A 3P4GA 2XTYA 2V5IA 2X6WA 1LM1A 1O8JA 2PYGA 2INVA 2QX3A 2QYUA 1L1IA 2NTPA 5JMCB 1O8GA 2W7ZA 4U4BA 3PSSA 1O8FA 2X85A 2PECA 2XC1A 3NB2A 4I84A 4JRAC 1HF2A 1KQ5A 1KTWA 2UVEA 2VFQA 3N6ZA 4W8RA 2QY1A 2BM5A 4MXNA 4Z03A 1WXRA 4YZQA 1DBOA 1HG8A 4YZXA 3KRGA 2J8KA 5C1EA 4YFOA 1NHCA 4XLFA 1O8EA 1PE9A 2VBKA 4OJLA 1QA1A 2NTQA 1TYUA 3ML3A 1RMGA 1QQ1A 3VSVA 2Z8GA 2IOUG 4XR6A 1IA5A 1TYVA 2QXZA 1O8IA 2O1DA 2PYHA 1K8FA 2VJJA 2XTWA 2B0RA 2VBMA 1TYWA 2QZAA 4NK8A 5AMVA 3RIQA 4OZZA 3UW0A 2BM6A 1H80A 2UVFA 3GQ7A 1KCCA 4YELA 1QA3A 2BX6A 2X6XA 4XM3A 1OGMX 4XKWA 3WWGA 1GQ8A 1RWRA 1OOCA 1VBLA 2NSTA 3SUCA 1O88A 3LYCA 2VBEA 1O8MA 4XORA 4XKVA 4YEIA 1OFMA 1CZFA 3NAWA 1TSPA 3EQOA
chains in the Genus database with same CATH topology
3B8YA 3EQNA 4MR0A 1O8DA 1O8LA 2NTBA 4XOPA 2VJIA 4OJ6A 3GQ8A 4EW9A 2O0WA 4PMHA 2X6YA 1K5CA 1IDKA 3GQAA 2EWEA 2INUA 4OJ5A 3VMVA 2NSPA 3GRHA 1BN8A 2O04A 1O8KA 3VSTA 4YEJA 1IDJA 1QJVA 1O8HA 4U49A 3ZSCA 2O0VA 3GQ9A 4W8SA 4OJPA 4Z05A 3B4NA 4W8QA 4XONA 1JTAA 4XL9A 1PXZA 1X0CA 5C1CA 1KCDA 4XOTA 1AIRA 3T9GA 4XN3A 1EE6A 1DBGA 4NK6A 1JRGA 1OGOX 4OJOA 1WMRA 4XLCA 4XLEA 4YZAA 3FY3A 1XG2A 4AVZA 1PLUA 2ODLA 3VSUA 4URRA 4XQFA 3VMWA 4YZ0A 3LMWA 2X3HA 2NT6A 1OFLA 2NZMA 3B90A 3ZPPA 2O17A 4C2LA 4OZYA 4XNFA 1RU4A 2NT9A 4W8TA 4XLAA 4XMYA 1BHEA 4XN0A 2BSPA 2IQ7A 4XLHA 3JURA 1QCXA 1IB4A 4Z06A 4HWVA 2X6WA 1O8JA 2PYGA 2INVA 2QX3A 2NTPA 1O8GA 4U4BA 1O8FA 2X85A 2PECA 4I84A 1KTWA 2UVEA 4W8RA 2QY1A 4MXNA 4Z03A 4YZQA 1DBOA 1HG8A 4YZXA 3KRGA 5C1EA 1NHCA 4XLFA 1O8EA 1PE9A 2VBKA 4OJLA 2NTQA 1RMGA 3VSVA 2Z8GA 4XR6A 1IA5A 2QXZA 1O8IA 2O1DA 2PYHA 2VJJA 2VBMA 4NK8A 5AMVA 4OZZA 3UW0A 1H80A 2UVFA 3GQ7A 1KCCA 4YELA 2X6XA 4XM3A 1OGMX 4XKWA 3WWGA 1GQ8A 1RWRA 1OOCA 1VBLA 2NSTA 3SUCA 1O88A 2VBEA 1O8MA 4XORA 4XKVA 1OFMA 1CZFA 3EQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B8Y A;  3EQN A;  4MR0 A;  1O8D A;  1O8L A;  2NTB A;  4XOP A;  2VJI A;  4OJ6 A;  3GQ8 A;  4EW9 A;  2O0W A;  4PMH A;  2X6Y A;  1K5C A;  1IDK A;  3GQA A;  2EWE A;  2INU A;  4OJ5 A;  3VMV A;  2NSP A;  3GRH A;  1BN8 A;  2O04 A;  1O8K A;  3VST A;  4YEJ A;  1IDJ A;  1QJV A;  1O8H A;  4U49 A;  3ZSC A;  2O0V A;  3GQ9 A;  4W8S A;  4OJP A;  4Z05 A;  3B4N A;  4W8Q A;  4XON A;  1JTA A;  4XL9 A;  1PXZ A;  1X0C A;  5C1C A;  1KCD A;  4XOT A;  1AIR A;  3T9G A;  4XN3 A;  1EE6 A;  1DBG A;  4NK6 A;  1JRG A;  1OGO X;  4OJO A;  1WMR A;  4XLC A;  4XLE A;  4YZA A;  3FY3 A;  1XG2 A;  4AVZ A;  1PLU A;  2ODL A;  3VSU A;  4URR A;  4XQF A;  3VMW A;  4YZ0 A;  3LMW A;  2X3H A;  2NT6 A;  1OFL A;  2NZM A;  3B90 A;  3ZPP A;  2O17 A;  4C2L A;  4OZY A;  4XNF A;  1RU4 A;  2NT9 A;  4W8T A;  4XLA A;  4XMY A;  1BHE A;  4XN0 A;  2BSP A;  2IQ7 A;  4XLH A;  3JUR A;  1QCX A;  1IB4 A;  4Z06 A;  4HWV A;  2X6W A;  1O8J A;  2PYG A;  2INV A;  2QX3 A;  2NTP A;  1O8G A;  4U4B A;  1O8F A;  2X85 A;  2PEC A;  4I84 A;  1KTW A;  2UVE A;  4W8R A;  2QY1 A;  4MXN A;  4Z03 A;  4YZQ A;  1DBO A;  1HG8 A;  4YZX A;  3KRG A;  5C1E A;  1NHC A;  4XLF A;  1O8E A;  1PE9 A;  2VBK A;  4OJL A;  2NTQ A;  1RMG A;  3VSV A;  2Z8G A;  4XR6 A;  1IA5 A;  2QXZ A;  1O8I A;  2O1D A;  2PYH A;  2VJJ A;  2VBM A;  4NK8 A;  5AMV A;  4OZZ A;  3UW0 A;  1H80 A;  2UVF A;  3GQ7 A;  1KCC A;  4YEL A;  2X6X A;  4XM3 A;  1OGM X;  4XKW A;  3WWG A;  1GQ8 A;  1RWR A;  1OOC A;  1VBL A;  2NST A;  3SUC A;  1O88 A;  2VBE A;  1O8M A;  4XOR A;  4XKV A;  1OFM A;  1CZF A;  3EQO A; 
#chains in the Genus database with same CATH topology
 3B8Y A;  3EQN A;  4MR0 A;  3TH0 A;  1O8D A;  1O8L A;  2NTB A;  4XOP A;  2F3L A;  5DNS A;  1K4Z A;  4YCQ A;  1QRB A;  2VJI A;  4OJ6 A;  3GQ8 A;  4EW9 A;  2O0W A;  3PET A;  4PMH A;  2X6Y A;  1K5C A;  1TYX A;  1IDK A;  3GQA A;  2EWE A;  1QRC A;  2INU A;  2VFM A;  4OJ5 A;  3VMV A;  2NSP A;  2VFO A;  2XTX A;  3GRH A;  1BN8 A;  1OFE A;  2O04 A;  1QA2 A;  1O8K A;  3VST A;  4YEJ A;  1IDJ A;  3N90 A;  1QJV A;  3DU1 X;  2XT4 A;  1O8H A;  4OM9 A;  4U49 A;  3ZSC A;  2O0V A;  3GQ9 A;  4W8S A;  2BM7 A;  4OJP A;  4Z05 A;  3B4N A;  4W8Q A;  3SYJ A;  4XON A;  1JTA A;  2BM4 A;  1PXZ A;  1X0C A;  4XL9 A;  5C1C A;  1KCD A;  4XOT A;  1AIR A;  3T9G A;  4XN3 A;  1EE6 A;  1DBG A;  4NK6 A;  1JRG A;  1OGO X;  4KH3 A;  4OJO A;  1WMR A;  4XLC A;  1EZG A;  4XLE A;  4YC5 A;  3BH6 B;  2G0Y A;  3LJY A;  4YZA A;  1LLW A;  4V02 C;  1CLW A;  3JX8 A;  3FY3 A;  1XG2 A;  4AVZ A;  1PLU A;  2ODL A;  3VSU A;  3PSZ A;  4URR A;  4XQF A;  3VMW A;  4OPW A;  4YZ0 A;  3LMW A;  4YDT A;  2X3H A;  2NT6 A;  3SZE A;  1OFL A;  2NZM A;  3B90 A;  3ZPP A;  1EA0 A;  2O17 A;  3AK5 A;  4C2L A;  2O6W A;  1DAB A;  4OZY A;  5JLV C;  2J8I A;  4XNF A;  3BH7 B;  1OFD A;  1RU4 A;  2NT9 A;  4W8T A;  1LLZ A;  3SQV A;  3H09 A;  2XT2 A;  4XLA A;  4XMY A;  1BHE A;  4XN0 A;  3SY2 A;  2BSP A;  2IQ7 A;  2YUH A;  4XLH A;  3JUR A;  2VFP A;  1QCX A;  1IB4 A;  2VFN A;  4HWV A;  4Z06 A;  3P4G A;  2XTY A;  2V5I A;  2X6W A;  1LM1 A;  1O8J A;  2PYG A;  2INV A;  2QX3 A;  2QYU A;  1L1I A;  2NTP A;  5JMC B;  1O8G A;  2W7Z A;  4U4B A;  3PSS A;  1O8F A;  2X85 A;  2PEC A;  2XC1 A;  3NB2 A;  4I84 A;  4JRA C;  1HF2 A;  1KQ5 A;  1KTW A;  2UVE A;  2VFQ A;  3N6Z A;  4W8R A;  2QY1 A;  2BM5 A;  4MXN A;  4Z03 A;  1WXR A;  4YZQ A;  1DBO A;  1HG8 A;  4YZX A;  3KRG A;  2J8K A;  5C1E A;  4YFO A;  1NHC A;  4XLF A;  1O8E A;  1PE9 A;  2VBK A;  4OJL A;  1QA1 A;  2NTQ A;  1TYU A;  3ML3 A;  1RMG A;  1QQ1 A;  3VSV A;  2Z8G A;  2IOU G;  4XR6 A;  1IA5 A;  1TYV A;  2QXZ A;  1O8I A;  2O1D A;  2PYH A;  1K8F A;  2VJJ A;  2XTW A;  2B0R A;  2VBM A;  1TYW A;  2QZA A;  4NK8 A;  5AMV A;  3RIQ A;  4OZZ A;  3UW0 A;  2BM6 A;  1H80 A;  2UVF A;  3GQ7 A;  1KCC A;  4YEL A;  1QA3 A;  2BX6 A;  2X6X A;  4XM3 A;  1OGM X;  4XKW A;  3WWG A;  1GQ8 A;  1RWR A;  1OOC A;  1VBL A;  2NST A;  3SUC A;  1O88 A;  3LYC A;  2VBE A;  1O8M A;  4XOR A;  4XKV A;  4YEI A;  1OFM A;  1CZF A;  3NAW A;  1TSP A;  3EQO A; 
#chains in the Genus database with same CATH homology
 3B8Y A;  3EQN A;  4MR0 A;  1O8D A;  1O8L A;  2NTB A;  4XOP A;  2VJI A;  4OJ6 A;  3GQ8 A;  4EW9 A;  2O0W A;  4PMH A;  2X6Y A;  1K5C A;  1IDK A;  3GQA A;  2EWE A;  2INU A;  4OJ5 A;  3VMV A;  2NSP A;  3GRH A;  1BN8 A;  2O04 A;  1O8K A;  3VST A;  4YEJ A;  1IDJ A;  1QJV A;  1O8H A;  4U49 A;  3ZSC A;  2O0V A;  3GQ9 A;  4W8S A;  4OJP A;  4Z05 A;  3B4N A;  4W8Q A;  4XON A;  1JTA A;  4XL9 A;  1PXZ A;  1X0C A;  5C1C A;  1KCD A;  4XOT A;  1AIR A;  3T9G A;  4XN3 A;  1EE6 A;  1DBG A;  4NK6 A;  1JRG A;  1OGO X;  4OJO A;  1WMR A;  4XLC A;  4XLE A;  4YZA A;  3FY3 A;  1XG2 A;  4AVZ A;  1PLU A;  2ODL A;  3VSU A;  4URR A;  4XQF A;  3VMW A;  4YZ0 A;  3LMW A;  2X3H A;  2NT6 A;  1OFL A;  2NZM A;  3B90 A;  3ZPP A;  2O17 A;  4C2L A;  4OZY A;  4XNF A;  1RU4 A;  2NT9 A;  4W8T A;  4XLA A;  4XMY A;  1BHE A;  4XN0 A;  2BSP A;  2IQ7 A;  4XLH A;  3JUR A;  1QCX A;  1IB4 A;  4Z06 A;  4HWV A;  2X6W A;  1O8J A;  2PYG A;  2INV A;  2QX3 A;  2NTP A;  1O8G A;  4U4B A;  1O8F A;  2X85 A;  2PEC A;  4I84 A;  1KTW A;  2UVE A;  4W8R A;  2QY1 A;  4MXN A;  4Z03 A;  4YZQ A;  1DBO A;  1HG8 A;  4YZX A;  3KRG A;  5C1E A;  1NHC A;  4XLF A;  1O8E A;  1PE9 A;  2VBK A;  4OJL A;  2NTQ A;  1RMG A;  3VSV A;  2Z8G A;  4XR6 A;  1IA5 A;  2QXZ A;  1O8I A;  2O1D A;  2PYH A;  2VJJ A;  2VBM A;  4NK8 A;  5AMV A;  4OZZ A;  3UW0 A;  1H80 A;  2UVF A;  3GQ7 A;  1KCC A;  4YEL A;  2X6X A;  4XM3 A;  1OGM X;  4XKW A;  3WWG A;  1GQ8 A;  1RWR A;  1OOC A;  1VBL A;  2NST A;  3SUC A;  1O88 A;  2VBE A;  1O8M A;  4XOR A;  4XKV A;  1OFM A;  1CZF A;  3EQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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