3DU1X

The 2.0 angstrom resolution crystal structure of hetl, a pentapeptide repeat protein involved in heterocyst differentiation regulation from the cyanobacterium nostoc sp. strain pcc 7120
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
237
structure length
237
Chain Sequence
HMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords All3740 protein
publication title The 2A resolution crystal structure of HetL, a pentapeptide repeat protein involved in regulation of heterocyst differentiation in the cyanobacterium Nostoc sp. strain PCC 7120
pubmed doi rcsb
source organism Nostoc sp.
molecule tags Structural protein
total genus 107
structure length 237
sequence length 237
ec nomenclature
pdb deposition date 2008-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 3du1X00
5DNSA 2XTYA 3PSSA 3NAWA 3SY2A 4YC5A 2XTXA 2QZAA 3SQVA 4YEIA 4YDTA 2QYUA 4YCQA 4YFOA 2J8KA 2XTWA 3DU1X 3PSZA 2XT2A 2XT4A 2O6WA 3NB2A
chains in the Genus database with same CATH superfamily
1O8GA 2VBKA 4YZ0A 1EZGA 4V02C 3BH6B 1PE9A 1K5CA 1XG2A 3FY3A 1RMGA 3B4NA 3H09A 3PSSA 4XL9A 4OJ5A 4XLEA 3GRHA 3SY2A 2INUA 1QA2A 2QXZA 2QZAA 4OZZA 2BM5A 4OJPA 4YELA 4U4BA 3WWGA 1HG8A 2Z8GA 4XNFA 4MXNA 1TYWA 4YCQA 3VSTA 2J8KA 1LLWA 4W8QA 1TYUA 2XC1A 3VSVA 4XN0A 2XT2A 3JURA 3B8YA 3LJYA 3PETA 4OM9A 3GQ7A 4XOPA 1JRGA 2VFMA 1IB4A 1H80A 2NT6A 1IDJA 1PLUA 3NB2A 4I84A 1QCXA 3KRGA 4NK8A 4NK6A 5JLVC 1PXZA 2B0RA 1TYVA 2PYGA 1DBGA 3VMWA 4W8RA 2QY1A 1OFEA 1OOCA 2VBMA 1KTWA 1EE6A 1O8HA 1RU4A 3NAWA 3TH0A 1O8EA 4PMHA 2VBEA 4XN3A 4XMYA 4YZXA 1QA3A 1OFLA 4YDTA 1K8FA 1X0CA 2QYUA 3EQOA 3LMWA 4XLFA 3UW0A 3AK5A 1K4ZA 1QRCA 3DU1X 4Z05A 1GQ8A 2V5IA 3B90A 1JTAA 3SYJA 1BHEA 2NZMA 4JRAC 2O0VA 4XR6A 1HF2A 2F3LA 3LYCA 1EA0A 1OFMA 5JMCB 2INVA 4XORA 2EWEA 2X85A 1O8KA 4XOTA 4YZAA 3BH7B 1BN8A 1O8FA 2IQ7A 4OZYA 2YUHA 4XKWA 1OGOX 1CLWA 3GQAA 2NTQA 2X6WA 2NSPA 3ZSCA 2VFNA 4YC5A 2XTXA 1O8MA 2O17A 4URRA 1L1IA 3SQVA 4C2LA 3N90A 2X3HA 4U49A 1QA1A 1O8LA 4OJOA 2O0WA 2VJJA 2VFOA 4W8SA 4YFOA 2XTWA 1OGMX 3JX8A 3VSUA 3PSZA 4KH3A 2NTPA 3RIQA 2BSPA 2X6XA 1QJVA 1VBLA 1DABA 2XT4A 4HWVA 5AMVA 2O6WA 3EQNA 1IDKA 2VJIA 4EW9A 2ODLA 4Z06A 2NT9A 2BM6A 1TSPA 4XLCA 4XQFA 4MR0A 4XLAA 1O88A 1WMRA 2X6YA 3GQ8A 4XM3A 5DNSA 2W7ZA 1WXRA 2BM7A 2XTYA 1CZFA 1KQ5A 4XLHA 2NTBA 3GQ9A 4Z03A 2O04A 3SZEA 2NSTA 1QRBA 5C1EA 3SUCA 3T9GA 2J8IA 1AIRA 1TYXA 1OFDA 2QX3A 1DBOA 2IOUG 2BM4A 2PECA 1IA5A 2BX6A 1QQ1A 3ML3A 4YEIA 2O1DA 1KCDA 4XONA 4OJLA 4YEJA 2VFPA 1KCCA 2UVEA 2G0YA 1NHCA 2PYHA 3N6ZA 1O8JA 1O8IA 2UVFA 4OPWA 3VMVA 3ZPPA 5C1CA 3P4GA 4AVZA 1LM1A 4W8TA 2VFQA 1RWRA 1O8DA 4OJ6A 4YZQA 1LLZA 4XKVA
chains in the Genus database with same CATH topology
5DNSA 2XTYA 3PSSA 3NAWA 3SY2A 4YC5A 2XTXA 2QZAA 3SQVA 4YEIA 4YDTA 2QYUA 4YCQA 4YFOA 2J8KA 2XTWA 3DU1X 3PSZA 2XT2A 2XT4A 2O6WA 3NB2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DNS A;  2XTY A;  3PSS A;  3NAW A;  3SY2 A;  4YC5 A;  2XTX A;  2QZA A;  3SQV A;  4YEI A;  4YDT A;  2QYU A;  4YCQ A;  4YFO A;  2J8K A;  2XTW A;  3DU1 X;  3PSZ A;  2XT2 A;  2XT4 A;  2O6W A;  3NB2 A; 
#chains in the Genus database with same CATH topology
 1O8G A;  2VBK A;  4YZ0 A;  1EZG A;  4V02 C;  3BH6 B;  1PE9 A;  1K5C A;  1XG2 A;  3FY3 A;  1RMG A;  3B4N A;  3H09 A;  3PSS A;  4XL9 A;  4OJ5 A;  4XLE A;  3GRH A;  3SY2 A;  2INU A;  1QA2 A;  2QXZ A;  2QZA A;  4OZZ A;  2BM5 A;  4OJP A;  4YEL A;  4U4B A;  3WWG A;  1HG8 A;  2Z8G A;  4XNF A;  4MXN A;  1TYW A;  4YCQ A;  3VST A;  2J8K A;  1LLW A;  4W8Q A;  1TYU A;  2XC1 A;  3VSV A;  4XN0 A;  2XT2 A;  3JUR A;  3B8Y A;  3LJY A;  3PET A;  4OM9 A;  3GQ7 A;  4XOP A;  1JRG A;  2VFM A;  1IB4 A;  1H80 A;  2NT6 A;  1IDJ A;  1PLU A;  3NB2 A;  4I84 A;  1QCX A;  3KRG A;  4NK8 A;  4NK6 A;  5JLV C;  1PXZ A;  2B0R A;  1TYV A;  2PYG A;  1DBG A;  3VMW A;  4W8R A;  2QY1 A;  1OFE A;  1OOC A;  2VBM A;  1KTW A;  1EE6 A;  1O8H A;  1RU4 A;  3NAW A;  3TH0 A;  1O8E A;  4PMH A;  2VBE A;  4XN3 A;  4XMY A;  4YZX A;  1QA3 A;  1OFL A;  4YDT A;  1K8F A;  1X0C A;  2QYU A;  3EQO A;  3LMW A;  4XLF A;  3UW0 A;  3AK5 A;  1K4Z A;  1QRC A;  3DU1 X;  4Z05 A;  1GQ8 A;  2V5I A;  3B90 A;  1JTA A;  3SYJ A;  1BHE A;  2NZM A;  4JRA C;  2O0V A;  4XR6 A;  1HF2 A;  2F3L A;  3LYC A;  1EA0 A;  1OFM A;  5JMC B;  2INV A;  4XOR A;  2EWE A;  2X85 A;  1O8K A;  4XOT A;  4YZA A;  3BH7 B;  1BN8 A;  1O8F A;  2IQ7 A;  4OZY A;  2YUH A;  4XKW A;  1OGO X;  1CLW A;  3GQA A;  2NTQ A;  2X6W A;  2NSP A;  3ZSC A;  2VFN A;  4YC5 A;  2XTX A;  1O8M A;  2O17 A;  4URR A;  1L1I A;  3SQV A;  4C2L A;  3N90 A;  2X3H A;  4U49 A;  1QA1 A;  1O8L A;  4OJO A;  2O0W A;  2VJJ A;  2VFO A;  4W8S A;  4YFO A;  2XTW A;  1OGM X;  3JX8 A;  3VSU A;  3PSZ A;  4KH3 A;  2NTP A;  3RIQ A;  2BSP A;  2X6X A;  1QJV A;  1VBL A;  1DAB A;  2XT4 A;  4HWV A;  5AMV A;  2O6W A;  3EQN A;  1IDK A;  2VJI A;  4EW9 A;  2ODL A;  4Z06 A;  2NT9 A;  2BM6 A;  1TSP A;  4XLC A;  4XQF A;  4MR0 A;  4XLA A;  1O88 A;  1WMR A;  2X6Y A;  3GQ8 A;  4XM3 A;  5DNS A;  2W7Z A;  1WXR A;  2BM7 A;  2XTY A;  1CZF A;  1KQ5 A;  4XLH A;  2NTB A;  3GQ9 A;  4Z03 A;  2O04 A;  3SZE A;  2NST A;  1QRB A;  5C1E A;  3SUC A;  3T9G A;  2J8I A;  1AIR A;  1TYX A;  1OFD A;  2QX3 A;  1DBO A;  2IOU G;  2BM4 A;  2PEC A;  1IA5 A;  2BX6 A;  1QQ1 A;  3ML3 A;  4YEI A;  2O1D A;  1KCD A;  4XON A;  4OJL A;  4YEJ A;  2VFP A;  1KCC A;  2UVE A;  2G0Y A;  1NHC A;  2PYH A;  3N6Z A;  1O8J A;  1O8I A;  2UVF A;  4OPW A;  3VMV A;  3ZPP A;  5C1C A;  3P4G A;  4AVZ A;  1LM1 A;  4W8T A;  2VFQ A;  1RWR A;  1O8D A;  4OJ6 A;  4YZQ A;  1LLZ A;  4XKV A; 
#chains in the Genus database with same CATH homology
 5DNS A;  2XTY A;  3PSS A;  3NAW A;  3SY2 A;  4YC5 A;  2XTX A;  2QZA A;  3SQV A;  4YEI A;  4YDT A;  2QYU A;  4YCQ A;  4YFO A;  2J8K A;  2XTW A;  3DU1 X;  3PSZ A;  2XT2 A;  2XT4 A;  2O6W A;  3NB2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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