3DU1X

The 2.0 angstrom resolution crystal structure of hetl, a pentapeptide repeat protein involved in heterocyst differentiation regulation from the cyanobacterium nostoc sp. strain pcc 7120
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
237
structure length
237
Chain Sequence
HMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Nostoc sp.
publication title The 2A resolution crystal structure of HetL, a pentapeptide repeat protein involved in regulation of heterocyst differentiation in the cyanobacterium Nostoc sp. strain PCC 7120
pubmed doi rcsb
molecule keywords All3740 protein
total genus 107
structure length 237
sequence length 237
ec nomenclature
pdb deposition date 2008-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 3du1X00
3NB2A 4YEIA 2XT4A 4YDTA 2O6WA 3SY2A 4YFOA 4YC5A 3PSZA 2XT2A 3PSSA 2J8KA 2XTYA 2QYUA 2XTWA 2XTXA 3DU1X 4YCQA 2QZAA 3SQVA 5DNSA 3NAWA
chains in the Genus database with same CATH superfamily
3NB2A 2INUA 4U49A 2QXZA 2NSTA 2XT4A 3BH7B 2PYGA 3LJYA 3ZSCA 2INVA 2VFQA 1OGMX 4U4BA 1EE6A 4MR0A 4XR6A 4XN0A 3UW0A 4XOTA 4AVZA 1LLZA 4W8TA 1CZFA 3ML3A 4V02C 1PLUA 4XLEA 4YC5A 1RMGA 2IQ7A 2VJJA 4KH3A 4NK8A 3VMVA 1HG8A 4I84A 2J8KA 4YEJA 3VSTA 1CLWA 2BSPA 2UVFA 3TH0A 1QRBA 4XLHA 1QA3A 2YUHA 2BM7A 1DBGA 4XQFA 3KRGA 1DBOA 1IDKA 1OFMA 4Z06A 1TYWA 3GQ9A 1LM1A 4XLFA 3N90A 4W8QA 4XONA 2NTPA 2VFMA 4XOPA 4Z05A 5DNSA 3VSUA 1O8DA 1QQ1A 3EQOA 2X3HA 1WXRA 2BX6A 3JURA 4YDTA 4EW9A 4YZAA 1O8JA 3B8YA 2O6WA 4OJ5A 2EWEA 4YELA 5C1CA 1QJVA 2X6WA 1X0CA 1K5CA 1OGOX 2VFOA 4URRA 2F3LA 2XT2A 4OPWA 3SUCA 3PSSA 2XC1A 4XN3A 2NTQA 1O8LA 4OJOA 2O0VA 1OFEA 1TYVA 2O17A 3H09A 2XTXA 3B4NA 1DABA 4OZZA 1K4ZA 1JTAA 2VFPA 1OFDA 3JX8A 3LMWA 4W8RA 3VSVA 2VBKA 1IA5A 4OJLA 4OZYA 2UVEA 2O0WA 3NAWA 3BH6B 1L1IA 1QRCA 3SYJA 4YZ0A 4YEIA 3N6ZA 4PMHA 1O8FA 1JRGA 4XORA 1QA1A 1WMRA 4MXNA 2BM4A 2O1DA 3SY2A 4XLAA 1PE9A 1AIRA 5C1EA 1KCDA 1K8FA 3PSZA 3T9GA 4OJ6A 3P4GA 4HWVA 4YZQA 1LLWA 2VBMA 3SZEA 2XTYA 2NZMA 2QYUA 1QA2A 1O8GA 1O8EA 1O88A 3DU1X 2NTBA 3GQ7A 4YCQA 4Z03A 3AK5A 1TYUA 2QZAA 1BN8A 1RU4A 2IOUG 2ODLA 1H80A 2B0RA 2PYHA 1XG2A 5JMCB 2VBEA 4XKVA 1KTWA 2PECA 2NT6A 1IDJA 4XMYA 1GQ8A 4NK6A 3WWGA 1IB4A 3VMWA 4C2LA 2J8IA 1TSPA 2VJIA 1KCCA 4OM9A 1NHCA 4OJPA 2X6YA 2X6XA 1O8MA 1OFLA 3PETA 2NSPA 2BM5A 3RIQA 2QY1A 3GRHA 1EZGA 4XL9A 4YZXA 1O8HA 3EQNA 4YFOA 2BM6A 1PXZA 4XKWA 4XNFA 3GQ8A 2Z8GA 3ZPPA 1BHEA 2NT9A 3B90A 3FY3A 1O8IA 2V5IA 2XTWA 4XLCA 2X85A 5AMVA 1O8KA 2W7ZA 1RWRA 4W8SA 3SQVA 1QCXA 1VBLA 2QX3A 2VFNA 1EA0A 2G0YA 3LYCA 1OOCA 5JLVC 1TYXA 2O04A 4JRAC 1KQ5A 1HF2A 3GQAA 4XM3A
chains in the Genus database with same CATH topology
3NB2A 4YEIA 2XT4A 4YDTA 2O6WA 3SY2A 4YFOA 4YC5A 3PSZA 2XT2A 3PSSA 2J8KA 2XTYA 2QYUA 2XTWA 2XTXA 3DU1X 4YCQA 2QZAA 3SQVA 5DNSA 3NAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NB2 A;  4YEI A;  2XT4 A;  4YDT A;  2O6W A;  3SY2 A;  4YFO A;  4YC5 A;  3PSZ A;  2XT2 A;  3PSS A;  2J8K A;  2XTY A;  2QYU A;  2XTW A;  2XTX A;  3DU1 X;  4YCQ A;  2QZA A;  3SQV A;  5DNS A;  3NAW A; 
#chains in the Genus database with same CATH topology
 3NB2 A;  2INU A;  4U49 A;  2QXZ A;  2NST A;  2XT4 A;  3BH7 B;  2PYG A;  3LJY A;  3ZSC A;  2INV A;  2VFQ A;  1OGM X;  4U4B A;  1EE6 A;  4MR0 A;  4XR6 A;  4XN0 A;  3UW0 A;  4XOT A;  4AVZ A;  1LLZ A;  4W8T A;  1CZF A;  3ML3 A;  4V02 C;  1PLU A;  4XLE A;  4YC5 A;  1RMG A;  2IQ7 A;  2VJJ A;  4KH3 A;  4NK8 A;  3VMV A;  1HG8 A;  4I84 A;  2J8K A;  4YEJ A;  3VST A;  1CLW A;  2BSP A;  2UVF A;  3TH0 A;  1QRB A;  4XLH A;  1QA3 A;  2YUH A;  2BM7 A;  1DBG A;  4XQF A;  3KRG A;  1DBO A;  1IDK A;  1OFM A;  4Z06 A;  1TYW A;  3GQ9 A;  1LM1 A;  4XLF A;  3N90 A;  4W8Q A;  4XON A;  2NTP A;  2VFM A;  4XOP A;  4Z05 A;  5DNS A;  3VSU A;  1O8D A;  1QQ1 A;  3EQO A;  2X3H A;  1WXR A;  2BX6 A;  3JUR A;  4YDT A;  4EW9 A;  4YZA A;  1O8J A;  3B8Y A;  2O6W A;  4OJ5 A;  2EWE A;  4YEL A;  5C1C A;  1QJV A;  2X6W A;  1X0C A;  1K5C A;  1OGO X;  2VFO A;  4URR A;  2F3L A;  2XT2 A;  4OPW A;  3SUC A;  3PSS A;  2XC1 A;  4XN3 A;  2NTQ A;  1O8L A;  4OJO A;  2O0V A;  1OFE A;  1TYV A;  2O17 A;  3H09 A;  2XTX A;  3B4N A;  1DAB A;  4OZZ A;  1K4Z A;  1JTA A;  2VFP A;  1OFD A;  3JX8 A;  3LMW A;  4W8R A;  3VSV A;  2VBK A;  1IA5 A;  4OJL A;  4OZY A;  2UVE A;  2O0W A;  3NAW A;  3BH6 B;  1L1I A;  1QRC A;  3SYJ A;  4YZ0 A;  4YEI A;  3N6Z A;  4PMH A;  1O8F A;  1JRG A;  4XOR A;  1QA1 A;  1WMR A;  4MXN A;  2BM4 A;  2O1D A;  3SY2 A;  4XLA A;  1PE9 A;  1AIR A;  5C1E A;  1KCD A;  1K8F A;  3PSZ A;  3T9G A;  4OJ6 A;  3P4G A;  4HWV A;  4YZQ A;  1LLW A;  2VBM A;  3SZE A;  2XTY A;  2NZM A;  2QYU A;  1QA2 A;  1O8G A;  1O8E A;  1O88 A;  3DU1 X;  2NTB A;  3GQ7 A;  4YCQ A;  4Z03 A;  3AK5 A;  1TYU A;  2QZA A;  1BN8 A;  1RU4 A;  2IOU G;  2ODL A;  1H80 A;  2B0R A;  2PYH A;  1XG2 A;  5JMC B;  2VBE A;  4XKV A;  1KTW A;  2PEC A;  2NT6 A;  1IDJ A;  4XMY A;  1GQ8 A;  4NK6 A;  3WWG A;  1IB4 A;  3VMW A;  4C2L A;  2J8I A;  1TSP A;  2VJI A;  1KCC A;  4OM9 A;  1NHC A;  4OJP A;  2X6Y A;  2X6X A;  1O8M A;  1OFL A;  3PET A;  2NSP A;  2BM5 A;  3RIQ A;  2QY1 A;  3GRH A;  1EZG A;  4XL9 A;  4YZX A;  1O8H A;  3EQN A;  4YFO A;  2BM6 A;  1PXZ A;  4XKW A;  4XNF A;  3GQ8 A;  2Z8G A;  3ZPP A;  1BHE A;  2NT9 A;  3B90 A;  3FY3 A;  1O8I A;  2V5I A;  2XTW A;  4XLC A;  2X85 A;  5AMV A;  1O8K A;  2W7Z A;  1RWR A;  4W8S A;  3SQV A;  1QCX A;  1VBL A;  2QX3 A;  2VFN A;  1EA0 A;  2G0Y A;  3LYC A;  1OOC A;  5JLV C;  1TYX A;  2O04 A;  4JRA C;  1KQ5 A;  1HF2 A;  3GQA A;  4XM3 A; 
#chains in the Genus database with same CATH homology
 3NB2 A;  4YEI A;  2XT4 A;  4YDT A;  2O6W A;  3SY2 A;  4YFO A;  4YC5 A;  3PSZ A;  2XT2 A;  3PSS A;  2J8K A;  2XTY A;  2QYU A;  2XTW A;  2XTX A;  3DU1 X;  4YCQ A;  2QZA A;  3SQV A;  5DNS A;  3NAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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