3ZPPA

Structure of the streptococcus pneumoniae surface protein and adhesin pfba
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
421
structure length
421
Chain Sequence
TALSVKDYGAVGDGIHDDRQAIQDAIDAAAQGLGGGNVYFPEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDDGAQVEWGPTEDISYSGGTIDMNGALNEEGTKAKNLPLINSSGAFAIGNSNNVTIKNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQIEPLTRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGTHYQTLSTQNPSNIKIQNNHFDNMMYAGVRFTGFTDVLIKGNRFDKKVKGESVHYRESGAALVNAYSYKNTKDLLDLNKQVVIAENIFNIADPKTKAIRVAKDSAEYLGKVSDITVTKNVINNNSKETEQPNIELLRVSDNLVVSENSIFGGKEGIVIEDSKGKITVLNNQFYNLSGKYISFIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords CELL WALL SURFACE ANCHOR FAMILY PROTEIN
publication title Structure of the Streptococcus Pneumoniae Surface Protein and Adhesin Pfba.
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 161
structure length 421
sequence length 421
ec nomenclature
pdb deposition date 2013-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3zppA00
3ZPPA 1VBLA 4MR0A 2PYGA 1O8HA 4XL9A 4XOPA 2ODLA 4NK6A 4XOTA 4XLEA 2VJJA 2QXZA 4Z03A 3SUCA 1IB4A 1JTAA 3FY3A 1DBOA 2VJIA 1O8MA 2PECA 4I84A 3WWGA 1O88A 1IA5A 1RU4A 2IQ7A 1O8DA 4XQFA 1OGOX 1QJVA 3EQOA 4U4BA 3B4NA 4XMYA 2VBMA 2UVEA 2NSTA 4XKWA 4AVZA 1BHEA 1WMRA 4Z05A 1DBGA 1EE6A 1OFMA 4OJ5A 4W8TA 4XNFA 2UVFA 5C1EA 2INUA 4OJ6A 4YZXA 3GQ8A 4OZZA 4U49A 4XLHA 4XR6A 3UW0A 4OZYA 4W8SA 2X6WA 4W8QA 4OJLA 1NHCA 4HWVA 1KCDA 2NT9A 2O04A 1O8KA 1H80A 4XN3A 5AMVA 4MXNA 2NT6A 4XLFA 2EWEA 2PYHA 3B8YA 3VSTA 1O8LA 4YZ0A 2O0WA 1KCCA 1JRGA 2NTQA 2NTPA 4XM3A 1O8GA 1AIRA 4OJOA 4C2LA 5C1CA 4XORA 1XG2A 1KTWA 3KRGA 1IDKA 4Z06A 2QX3A 3VMVA 4YELA 2X85A 1OOCA 3ZSCA 4W8RA 2X6XA 3VSVA 1O8FA 3T9GA 4EW9A 3GQAA 1GQ8A 4OJPA 1PLUA 2NZMA 4XLCA 4YZQA 2QY1A 4XKVA 3JURA 2Z8GA 1CZFA 1O8JA 2NSPA 2X3HA 2BSPA 3GRHA 2INVA 4YZAA 3B90A 1O8EA 3GQ9A 1O8IA 4URRA 1BN8A 3LMWA 2O0VA 3VSUA 2O17A 4NK8A 2VBEA 1HG8A 4XN0A 4PMHA 4YEJA 1IDJA 1RMGA 2NTBA 2X6YA 1K5CA 1OFLA 3EQNA 2O1DA 3VMWA 3GQ7A 1RWRA 4XLAA 1OGMX 1PXZA 2VBKA 4XONA 1QCXA 1X0CA 1PE9A
chains in the Genus database with same CATH superfamily
3ZPPA 1VBLA 4MR0A 2PYGA 3PSZA 1O8HA 1EZGA 4XL9A 2ODLA 4NK6A 4XOTA 4XOPA 5JMCB 4XLEA 2VJJA 3NB2A 2QXZA 4Z03A 2W7ZA 3SUCA 1IB4A 1TYWA 1JTAA 3FY3A 1QA3A 2J8IA 1DBOA 2VJIA 4V02C 3LJYA 3SZEA 1O8MA 1OFDA 2PECA 1K8FA 1QRBA 3N90A 4I84A 3SY2A 1O88A 3WWGA 1IA5A 1RU4A 2IQ7A 2BM4A 1O8DA 4XQFA 1OGOX 1QJVA 3EQOA 4U4BA 3B4NA 4XMYA 2VBMA 2UVEA 2NSTA 4XKWA 4YDTA 4AVZA 1BHEA 2XTXA 1WMRA 2YUHA 3H09A 4Z05A 1DBGA 1EE6A 2B0RA 1OFMA 3N6ZA 4OJ5A 4W8TA 3BH6B 4XNFA 4OPWA 2UVFA 5JLVC 5C1EA 2XT2A 2INUA 4OJ6A 4YZXA 2XC1A 3GQ8A 4OZZA 1WXRA 4U49A 4XLHA 4XR6A 3UW0A 4OZYA 4W8SA 4YFOA 4YEIA 2XT4A 2X6WA 4W8QA 4OJLA 1NHCA 1OFEA 4HWVA 1KCDA 2NT9A 3ML3A 2O04A 1O8KA 1H80A 4XN3A 5AMVA 1TSPA 4MXNA 1QQ1A 2NT6A 2IOUG 4XLFA 2EWEA 2PYHA 3B8YA 3VSTA 1O8LA 4YZ0A 2O0WA 1KCCA 1JRGA 2NTQA 2NTPA 4XM3A 1O8GA 1AIRA 3PETA 4OJOA 1LLWA 4C2LA 5C1CA 1QA2A 1LM1A 4XORA 1XG2A 1KTWA 3KRGA 1IDKA 4Z06A 1TYVA 2QX3A 3VMVA 4YELA 1L1IA 1KQ5A 2X85A 1OOCA 3BH7B 3ZSCA 2BM5A 4W8RA 2X6XA 1K4ZA 3VSVA 1O8FA 2VFNA 3T9GA 2QZAA 4EW9A 3GQAA 3DU1X 3TH0A 5DNSA 2V5IA 1GQ8A 4OJPA 1PLUA 2NZMA 4XLCA 1HF2A 4YZQA 2QY1A 4XKVA 1QA1A 3JURA 2BM7A 2G0YA 2Z8GA 1CLWA 1CZFA 1O8JA 2NSPA 4OM9A 2X3HA 2BSPA 2VFPA 3GRHA 2INVA 3AK5A 3RIQA 2BX6A 3B90A 2J8KA 1O8EA 4YZAA 3GQ9A 1O8IA 2VFOA 4URRA 1BN8A 3LMWA 2O0VA 1TYUA 2XTWA 2O17A 2VFMA 2XTYA 4NK8A 3SYJA 3VSUA 3SQVA 2VBEA 1HG8A 4XN0A 4YCQA 2O6WA 4PMHA 1EA0A 3PSSA 1LLZA 4YEJA 1IDJA 4KH3A 1RMGA 2NTBA 2X6YA 1K5CA 1OFLA 3EQNA 2O1DA 3VMWA 2F3LA 2BM6A 3GQ7A 3JX8A 1DABA 1RWRA 3NAWA 4XLAA 1OGMX 1PXZA 2VFQA 2VBKA 3LYCA 4JRAC 4XONA 3P4GA 1TYXA 1QRCA 1QCXA 2QYUA 1X0CA 1PE9A 4YC5A
chains in the Genus database with same CATH topology
3ZPPA 1VBLA 4MR0A 2PYGA 1O8HA 4XL9A 4XOPA 2ODLA 4NK6A 4XOTA 4XLEA 2VJJA 2QXZA 4Z03A 3SUCA 1IB4A 1JTAA 3FY3A 1DBOA 2VJIA 1O8MA 2PECA 4I84A 3WWGA 1O88A 1IA5A 1RU4A 2IQ7A 1O8DA 4XQFA 1OGOX 1QJVA 3EQOA 4U4BA 3B4NA 4XMYA 2VBMA 2UVEA 2NSTA 4XKWA 4AVZA 1BHEA 1WMRA 4Z05A 1DBGA 1EE6A 1OFMA 4OJ5A 4W8TA 4XNFA 2UVFA 5C1EA 2INUA 4OJ6A 4YZXA 3GQ8A 4OZZA 4U49A 4XLHA 4XR6A 3UW0A 4OZYA 4W8SA 2X6WA 4W8QA 4OJLA 1NHCA 4HWVA 1KCDA 2NT9A 2O04A 1O8KA 1H80A 4XN3A 5AMVA 4MXNA 2NT6A 4XLFA 2EWEA 2PYHA 3B8YA 3VSTA 1O8LA 4YZ0A 2O0WA 1KCCA 1JRGA 2NTQA 2NTPA 4XM3A 1O8GA 1AIRA 4OJOA 4C2LA 5C1CA 4XORA 1XG2A 1KTWA 3KRGA 1IDKA 4Z06A 2QX3A 3VMVA 4YELA 2X85A 1OOCA 3ZSCA 4W8RA 2X6XA 3VSVA 1O8FA 3T9GA 4EW9A 3GQAA 1GQ8A 4OJPA 1PLUA 2NZMA 4XLCA 4YZQA 2QY1A 4XKVA 3JURA 2Z8GA 1CZFA 1O8JA 2NSPA 2X3HA 2BSPA 3GRHA 2INVA 4YZAA 3B90A 1O8EA 3GQ9A 1O8IA 4URRA 1BN8A 3LMWA 2O0VA 3VSUA 2O17A 4NK8A 2VBEA 1HG8A 4XN0A 4PMHA 4YEJA 1IDJA 1RMGA 2NTBA 2X6YA 1K5CA 1OFLA 3EQNA 2O1DA 3VMWA 3GQ7A 1RWRA 4XLAA 1OGMX 1PXZA 2VBKA 4XONA 1QCXA 1X0CA 1PE9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZPP A;  1VBL A;  4MR0 A;  2PYG A;  1O8H A;  4XL9 A;  4XOP A;  2ODL A;  4NK6 A;  4XOT A;  4XLE A;  2VJJ A;  2QXZ A;  4Z03 A;  3SUC A;  1IB4 A;  1JTA A;  3FY3 A;  1DBO A;  2VJI A;  1O8M A;  2PEC A;  4I84 A;  3WWG A;  1O88 A;  1IA5 A;  1RU4 A;  2IQ7 A;  1O8D A;  4XQF A;  1OGO X;  1QJV A;  3EQO A;  4U4B A;  3B4N A;  4XMY A;  2VBM A;  2UVE A;  2NST A;  4XKW A;  4AVZ A;  1BHE A;  1WMR A;  4Z05 A;  1DBG A;  1EE6 A;  1OFM A;  4OJ5 A;  4W8T A;  4XNF A;  2UVF A;  5C1E A;  2INU A;  4OJ6 A;  4YZX A;  3GQ8 A;  4OZZ A;  4U49 A;  4XLH A;  4XR6 A;  3UW0 A;  4OZY A;  4W8S A;  2X6W A;  4W8Q A;  4OJL A;  1NHC A;  4HWV A;  1KCD A;  2NT9 A;  2O04 A;  1O8K A;  1H80 A;  4XN3 A;  5AMV A;  4MXN A;  2NT6 A;  4XLF A;  2EWE A;  2PYH A;  3B8Y A;  3VST A;  1O8L A;  4YZ0 A;  2O0W A;  1KCC A;  1JRG A;  2NTQ A;  2NTP A;  4XM3 A;  1O8G A;  1AIR A;  4OJO A;  4C2L A;  5C1C A;  4XOR A;  1XG2 A;  1KTW A;  3KRG A;  1IDK A;  4Z06 A;  2QX3 A;  3VMV A;  4YEL A;  2X85 A;  1OOC A;  3ZSC A;  4W8R A;  2X6X A;  3VSV A;  1O8F A;  3T9G A;  4EW9 A;  3GQA A;  1GQ8 A;  4OJP A;  1PLU A;  2NZM A;  4XLC A;  4YZQ A;  2QY1 A;  4XKV A;  3JUR A;  2Z8G A;  1CZF A;  1O8J A;  2NSP A;  2X3H A;  2BSP A;  3GRH A;  2INV A;  4YZA A;  3B90 A;  1O8E A;  3GQ9 A;  1O8I A;  4URR A;  1BN8 A;  3LMW A;  2O0V A;  3VSU A;  2O17 A;  4NK8 A;  2VBE A;  1HG8 A;  4XN0 A;  4PMH A;  4YEJ A;  1IDJ A;  1RMG A;  2NTB A;  2X6Y A;  1K5C A;  1OFL A;  3EQN A;  2O1D A;  3VMW A;  3GQ7 A;  1RWR A;  4XLA A;  1OGM X;  1PXZ A;  2VBK A;  4XON A;  1QCX A;  1X0C A;  1PE9 A; 
#chains in the Genus database with same CATH topology
 3ZPP A;  1VBL A;  4MR0 A;  2PYG A;  3PSZ A;  1O8H A;  1EZG A;  4XL9 A;  2ODL A;  4NK6 A;  4XOT A;  4XOP A;  5JMC B;  4XLE A;  2VJJ A;  3NB2 A;  2QXZ A;  4Z03 A;  2W7Z A;  3SUC A;  1IB4 A;  1TYW A;  1JTA A;  3FY3 A;  1QA3 A;  2J8I A;  1DBO A;  2VJI A;  4V02 C;  3LJY A;  3SZE A;  1O8M A;  1OFD A;  2PEC A;  1K8F A;  1QRB A;  3N90 A;  4I84 A;  3SY2 A;  1O88 A;  3WWG A;  1IA5 A;  1RU4 A;  2IQ7 A;  2BM4 A;  1O8D A;  4XQF A;  1OGO X;  1QJV A;  3EQO A;  4U4B A;  3B4N A;  4XMY A;  2VBM A;  2UVE A;  2NST A;  4XKW A;  4YDT A;  4AVZ A;  1BHE A;  2XTX A;  1WMR A;  2YUH A;  3H09 A;  4Z05 A;  1DBG A;  1EE6 A;  2B0R A;  1OFM A;  3N6Z A;  4OJ5 A;  4W8T A;  3BH6 B;  4XNF A;  4OPW A;  2UVF A;  5JLV C;  5C1E A;  2XT2 A;  2INU A;  4OJ6 A;  4YZX A;  2XC1 A;  3GQ8 A;  4OZZ A;  1WXR A;  4U49 A;  4XLH A;  4XR6 A;  3UW0 A;  4OZY A;  4W8S A;  4YFO A;  4YEI A;  2XT4 A;  2X6W A;  4W8Q A;  4OJL A;  1NHC A;  1OFE A;  4HWV A;  1KCD A;  2NT9 A;  3ML3 A;  2O04 A;  1O8K A;  1H80 A;  4XN3 A;  5AMV A;  1TSP A;  4MXN A;  1QQ1 A;  2NT6 A;  2IOU G;  4XLF A;  2EWE A;  2PYH A;  3B8Y A;  3VST A;  1O8L A;  4YZ0 A;  2O0W A;  1KCC A;  1JRG A;  2NTQ A;  2NTP A;  4XM3 A;  1O8G A;  1AIR A;  3PET A;  4OJO A;  1LLW A;  4C2L A;  5C1C A;  1QA2 A;  1LM1 A;  4XOR A;  1XG2 A;  1KTW A;  3KRG A;  1IDK A;  4Z06 A;  1TYV A;  2QX3 A;  3VMV A;  4YEL A;  1L1I A;  1KQ5 A;  2X85 A;  1OOC A;  3BH7 B;  3ZSC A;  2BM5 A;  4W8R A;  2X6X A;  1K4Z A;  3VSV A;  1O8F A;  2VFN A;  3T9G A;  2QZA A;  4EW9 A;  3GQA A;  3DU1 X;  3TH0 A;  5DNS A;  2V5I A;  1GQ8 A;  4OJP A;  1PLU A;  2NZM A;  4XLC A;  1HF2 A;  4YZQ A;  2QY1 A;  4XKV A;  1QA1 A;  3JUR A;  2BM7 A;  2G0Y A;  2Z8G A;  1CLW A;  1CZF A;  1O8J A;  2NSP A;  4OM9 A;  2X3H A;  2BSP A;  2VFP A;  3GRH A;  2INV A;  3AK5 A;  3RIQ A;  2BX6 A;  3B90 A;  2J8K A;  1O8E A;  4YZA A;  3GQ9 A;  1O8I A;  2VFO A;  4URR A;  1BN8 A;  3LMW A;  2O0V A;  1TYU A;  2XTW A;  2O17 A;  2VFM A;  2XTY A;  4NK8 A;  3SYJ A;  3VSU A;  3SQV A;  2VBE A;  1HG8 A;  4XN0 A;  4YCQ A;  2O6W A;  4PMH A;  1EA0 A;  3PSS A;  1LLZ A;  4YEJ A;  1IDJ A;  4KH3 A;  1RMG A;  2NTB A;  2X6Y A;  1K5C A;  1OFL A;  3EQN A;  2O1D A;  3VMW A;  2F3L A;  2BM6 A;  3GQ7 A;  3JX8 A;  1DAB A;  1RWR A;  3NAW A;  4XLA A;  1OGM X;  1PXZ A;  2VFQ A;  2VBK A;  3LYC A;  4JRA C;  4XON A;  3P4G A;  1TYX A;  1QRC A;  1QCX A;  2QYU A;  1X0C A;  1PE9 A;  4YC5 A; 
#chains in the Genus database with same CATH homology
 3ZPP A;  1VBL A;  4MR0 A;  2PYG A;  1O8H A;  4XL9 A;  4XOP A;  2ODL A;  4NK6 A;  4XOT A;  4XLE A;  2VJJ A;  2QXZ A;  4Z03 A;  3SUC A;  1IB4 A;  1JTA A;  3FY3 A;  1DBO A;  2VJI A;  1O8M A;  2PEC A;  4I84 A;  3WWG A;  1O88 A;  1IA5 A;  1RU4 A;  2IQ7 A;  1O8D A;  4XQF A;  1OGO X;  1QJV A;  3EQO A;  4U4B A;  3B4N A;  4XMY A;  2VBM A;  2UVE A;  2NST A;  4XKW A;  4AVZ A;  1BHE A;  1WMR A;  4Z05 A;  1DBG A;  1EE6 A;  1OFM A;  4OJ5 A;  4W8T A;  4XNF A;  2UVF A;  5C1E A;  2INU A;  4OJ6 A;  4YZX A;  3GQ8 A;  4OZZ A;  4U49 A;  4XLH A;  4XR6 A;  3UW0 A;  4OZY A;  4W8S A;  2X6W A;  4W8Q A;  4OJL A;  1NHC A;  4HWV A;  1KCD A;  2NT9 A;  2O04 A;  1O8K A;  1H80 A;  4XN3 A;  5AMV A;  4MXN A;  2NT6 A;  4XLF A;  2EWE A;  2PYH A;  3B8Y A;  3VST A;  1O8L A;  4YZ0 A;  2O0W A;  1KCC A;  1JRG A;  2NTQ A;  2NTP A;  4XM3 A;  1O8G A;  1AIR A;  4OJO A;  4C2L A;  5C1C A;  4XOR A;  1XG2 A;  1KTW A;  3KRG A;  1IDK A;  4Z06 A;  2QX3 A;  3VMV A;  4YEL A;  2X85 A;  1OOC A;  3ZSC A;  4W8R A;  2X6X A;  3VSV A;  1O8F A;  3T9G A;  4EW9 A;  3GQA A;  1GQ8 A;  4OJP A;  1PLU A;  2NZM A;  4XLC A;  4YZQ A;  2QY1 A;  4XKV A;  3JUR A;  2Z8G A;  1CZF A;  1O8J A;  2NSP A;  2X3H A;  2BSP A;  3GRH A;  2INV A;  4YZA A;  3B90 A;  1O8E A;  3GQ9 A;  1O8I A;  4URR A;  1BN8 A;  3LMW A;  2O0V A;  3VSU A;  2O17 A;  4NK8 A;  2VBE A;  1HG8 A;  4XN0 A;  4PMH A;  4YEJ A;  1IDJ A;  1RMG A;  2NTB A;  2X6Y A;  1K5C A;  1OFL A;  3EQN A;  2O1D A;  3VMW A;  3GQ7 A;  1RWR A;  4XLA A;  1OGM X;  1PXZ A;  2VBK A;  4XON A;  1QCX A;  1X0C A;  1PE9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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