3ZPPA

Structure of the streptococcus pneumoniae surface protein and adhesin pfba
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
421
structure length
421
Chain Sequence
TALSVKDYGAVGDGIHDDRQAIQDAIDAAAQGLGGGNVYFPEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDDGAQVEWGPTEDISYSGGTIDMNGALNEEGTKAKNLPLINSSGAFAIGNSNNVTIKNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQIEPLTRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGTHYQTLSTQNPSNIKIQNNHFDNMMYAGVRFTGFTDVLIKGNRFDKKVKGESVHYRESGAALVNAYSYKNTKDLLDLNKQVVIAENIFNIADPKTKAIRVAKDSAEYLGKVSDITVTKNVINNNSKETEQPNIELLRVSDNLVVSENSIFGGKEGIVIEDSKGKITVLNNQFYNLSGKYISFIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CELL WALL SURFACE ANCHOR FAMILY PROTEIN
publication title Structure of the Streptococcus Pneumoniae Surface Protein and Adhesin Pfba.
pubmed doi rcsb
source organism Streptococcus pneumoniae
molecule tags Cell adhesion
total genus 161
structure length 421
sequence length 421
ec nomenclature
pdb deposition date 2013-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3zppA00
1HG8A 1OFMA 2QY1A 1KCDA 3B90A 2VBKA 1PLUA 4XOPA 2O17A 2X6YA 4OJ6A 2NTBA 1PXZA 4OJLA 4W8RA 3GQ9A 1IB4A 4XM3A 2Z8GA 1OOCA 4W8QA 3GQ8A 4XLAA 2BSPA 4OJOA 1O8HA 1O8MA 4Z06A 1KTWA 1RWRA 4XKVA 5C1EA 5AMVA 1WMRA 2O04A 4YEJA 3B8YA 3KRGA 3ZSCA 1IDJA 3SUCA 4MR0A 2NTQA 4NK6A 3JURA 1EE6A 1AIRA 3VSTA 2EWEA 3FY3A 2INVA 4YZ0A 4C2LA 3GQAA 3WWGA 2O1DA 4XNFA 1O8LA 1O8JA 4XONA 2ODLA 2UVEA 4PMHA 4EW9A 2VBMA 4U49A 1OFLA 2VBEA 4XLHA 4XKWA 1JTAA 1KCCA 4XQFA 4W8TA 3ZPPA 1NHCA 1QJVA 2NSTA 4XN3A 2O0VA 2VJIA 2PYHA 1QCXA 1O8GA 1GQ8A 2IQ7A 1RMGA 4AVZA 4XLFA 4I84A 3EQOA 3EQNA 3LMWA 1CZFA 4NK8A 2X6WA 4XL9A 2NT9A 1K5CA 1X0CA 1OGMX 1VBLA 1O8FA 1XG2A 3GQ7A 4XOTA 1BN8A 1DBGA 4YZQA 4Z03A 4W8SA 2PYGA 4OJPA 3T9GA 4XLEA 4MXNA 1H80A 3VSUA 1O8DA 1IDKA 1PE9A 3UW0A 2UVFA 4YZAA 1RU4A 2PECA 4OJ5A 2INUA 3VMVA 4XLCA 4OZZA 2VJJA 4XORA 4U4BA 3B4NA 5C1CA 1O8IA 1O8KA 2NZMA 1O88A 3VSVA 4HWVA 2O0WA 2NTPA 2NSPA 1O8EA 2QXZA 4XR6A 1DBOA 4URRA 4YELA 1OGOX 4Z05A 2QX3A 2NT6A 1IA5A 2X6XA 4XN0A 4YZXA 1JRGA 3GRHA 2X3HA 4OZYA 3VMWA 2X85A 4XMYA 1BHEA
chains in the Genus database with same CATH superfamily
1HG8A 3JX8A 1OFMA 2QY1A 1K8FA 3B90A 1KCDA 2VBKA 1PLUA 3P4GA 4XOPA 1LM1A 2O17A 3NB2A 2X6YA 4OJ6A 2NTBA 2F3LA 1PXZA 4OJLA 4W8RA 2BM7A 3GQ9A 4XM3A 4YFOA 2Z8GA 4JRAC 1OOCA 4W8QA 3GQ8A 2VFNA 4XLAA 1DABA 3NAWA 4OPWA 2BSPA 2BM5A 4OJOA 1O8HA 3N90A 1O8MA 4Z06A 1KTWA 1RWRA 4XKVA 5C1EA 5AMVA 1WMRA 2O04A 4YEJA 1L1IA 2XT2A 3B8YA 3KRGA 3LYCA 3ZSCA 1IDJA 2O6WA 3SUCA 4MR0A 3TH0A 2NTQA 4NK6A 3JURA 1EE6A 3SZEA 1AIRA 2VFMA 2XTWA 3VSTA 2J8KA 4OM9A 2B0RA 4YDTA 2EWEA 3FY3A 2INVA 4YZ0A 4C2LA 3GQAA 3WWGA 2O1DA 2VFQA 4XNFA 1O8LA 5JMCB 1QA2A 1O8JA 2YUHA 2XC1A 4XONA 2ODLA 1QQ1A 4YCQA 2UVEA 2W7ZA 4PMHA 4EW9A 2VBMA 4U49A 1OFLA 2VBEA 3PSZA 4XLHA 4XKWA 1WXRA 1JTAA 1TSPA 4XQFA 4W8TA 1KCCA 3ZPPA 5JLVC 1NHCA 1QJVA 2NSTA 2V5IA 2O0VA 2VJIA 2PYHA 4XN3A 1QCXA 1IB4A 1O8GA 1GQ8A 1OFDA 3PSSA 3AK5A 2XTYA 2IQ7A 1RMGA 3PETA 4AVZA 4XLFA 4I84A 3EQOA 1EZGA 3EQNA 1LLWA 3LMWA 2G0YA 1CZFA 4NK8A 2X6WA 4XL9A 1TYXA 2NT9A 3BH7B 1HF2A 1K5CA 3SY2A 2J8IA 1X0CA 1OGMX 1VBLA 1O8FA 1XG2A 3GQ7A 4XOTA 1BN8A 1DBGA 4YZQA 4Z03A 4W8SA 2PYGA 4OJPA 3H09A 3T9GA 4XLEA 3RIQA 5DNSA 1OFEA 2VFPA 1KQ5A 4MXNA 1H80A 3VSUA 3ML3A 1O8DA 2BM4A 2QYUA 1IDKA 1PE9A 2VFOA 1TYWA 3UW0A 2UVFA 3LJYA 4YZAA 1RU4A 2PECA 2XTXA 2INUA 4OJ5A 3VMVA 2BM6A 4XLCA 1EA0A 4OZZA 1K4ZA 1TYVA 2VJJA 4XORA 1CLWA 4U4BA 3B4NA 5C1CA 1O8IA 1O8KA 1TYUA 2QZAA 4YC5A 2NZMA 1O88A 1QRBA 3DU1X 4HWVA 3VSVA 2O0WA 2IOUG 2NTPA 3BH6B 1QA1A 2NSPA 1O8EA 2QXZA 4XR6A 1DBOA 4V02C 3SYJA 1QA3A 3N6ZA 4URRA 4YELA 2BX6A 1OGOX 4Z05A 1QRCA 2QX3A 2NT6A 3SQVA 4YEIA 2X6XA 4XN0A 4YZXA 1IA5A 1JRGA 3GRHA 2X3HA 4OZYA 3VMWA 2XT4A 4KH3A 2X85A 4XMYA 1BHEA 1LLZA
chains in the Genus database with same CATH topology
1HG8A 1OFMA 2QY1A 1KCDA 3B90A 2VBKA 1PLUA 4XOPA 2O17A 2X6YA 4OJ6A 2NTBA 1PXZA 4OJLA 4W8RA 3GQ9A 1IB4A 4XM3A 2Z8GA 1OOCA 4W8QA 3GQ8A 4XLAA 2BSPA 4OJOA 1O8HA 1O8MA 4Z06A 1KTWA 1RWRA 4XKVA 5C1EA 5AMVA 1WMRA 2O04A 4YEJA 3B8YA 3KRGA 3ZSCA 1IDJA 3SUCA 4MR0A 2NTQA 4NK6A 3JURA 1EE6A 1AIRA 3VSTA 2EWEA 3FY3A 2INVA 4YZ0A 4C2LA 3GQAA 3WWGA 2O1DA 4XNFA 1O8LA 1O8JA 4XONA 2ODLA 2UVEA 4PMHA 4EW9A 2VBMA 4U49A 1OFLA 2VBEA 4XLHA 4XKWA 1JTAA 1KCCA 4XQFA 4W8TA 3ZPPA 1NHCA 1QJVA 2NSTA 4XN3A 2O0VA 2VJIA 2PYHA 1QCXA 1O8GA 1GQ8A 2IQ7A 1RMGA 4AVZA 4XLFA 4I84A 3EQOA 3EQNA 3LMWA 1CZFA 4NK8A 2X6WA 4XL9A 2NT9A 1K5CA 1X0CA 1OGMX 1VBLA 1O8FA 1XG2A 3GQ7A 4XOTA 1BN8A 1DBGA 4YZQA 4Z03A 4W8SA 2PYGA 4OJPA 3T9GA 4XLEA 4MXNA 1H80A 3VSUA 1O8DA 1IDKA 1PE9A 3UW0A 2UVFA 4YZAA 1RU4A 2PECA 4OJ5A 2INUA 3VMVA 4XLCA 4OZZA 2VJJA 4XORA 4U4BA 3B4NA 5C1CA 1O8IA 1O8KA 2NZMA 1O88A 3VSVA 4HWVA 2O0WA 2NTPA 2NSPA 1O8EA 2QXZA 4XR6A 1DBOA 4URRA 4YELA 1OGOX 4Z05A 2QX3A 2NT6A 1IA5A 2X6XA 4XN0A 4YZXA 1JRGA 3GRHA 2X3HA 4OZYA 3VMWA 2X85A 4XMYA 1BHEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HG8 A;  1OFM A;  2QY1 A;  1KCD A;  3B90 A;  2VBK A;  1PLU A;  4XOP A;  2O17 A;  2X6Y A;  4OJ6 A;  2NTB A;  1PXZ A;  4OJL A;  4W8R A;  3GQ9 A;  1IB4 A;  4XM3 A;  2Z8G A;  1OOC A;  4W8Q A;  3GQ8 A;  4XLA A;  2BSP A;  4OJO A;  1O8H A;  1O8M A;  4Z06 A;  1KTW A;  1RWR A;  4XKV A;  5C1E A;  5AMV A;  1WMR A;  2O04 A;  4YEJ A;  3B8Y A;  3KRG A;  3ZSC A;  1IDJ A;  3SUC A;  4MR0 A;  2NTQ A;  4NK6 A;  3JUR A;  1EE6 A;  1AIR A;  3VST A;  2EWE A;  3FY3 A;  2INV A;  4YZ0 A;  4C2L A;  3GQA A;  3WWG A;  2O1D A;  4XNF A;  1O8L A;  1O8J A;  4XON A;  2ODL A;  2UVE A;  4PMH A;  4EW9 A;  2VBM A;  4U49 A;  1OFL A;  2VBE A;  4XLH A;  4XKW A;  1JTA A;  1KCC A;  4XQF A;  4W8T A;  3ZPP A;  1NHC A;  1QJV A;  2NST A;  4XN3 A;  2O0V A;  2VJI A;  2PYH A;  1QCX A;  1O8G A;  1GQ8 A;  2IQ7 A;  1RMG A;  4AVZ A;  4XLF A;  4I84 A;  3EQO A;  3EQN A;  3LMW A;  1CZF A;  4NK8 A;  2X6W A;  4XL9 A;  2NT9 A;  1K5C A;  1X0C A;  1OGM X;  1VBL A;  1O8F A;  1XG2 A;  3GQ7 A;  4XOT A;  1BN8 A;  1DBG A;  4YZQ A;  4Z03 A;  4W8S A;  2PYG A;  4OJP A;  3T9G A;  4XLE A;  4MXN A;  1H80 A;  3VSU A;  1O8D A;  1IDK A;  1PE9 A;  3UW0 A;  2UVF A;  4YZA A;  1RU4 A;  2PEC A;  4OJ5 A;  2INU A;  3VMV A;  4XLC A;  4OZZ A;  2VJJ A;  4XOR A;  4U4B A;  3B4N A;  5C1C A;  1O8I A;  1O8K A;  2NZM A;  1O88 A;  3VSV A;  4HWV A;  2O0W A;  2NTP A;  2NSP A;  1O8E A;  2QXZ A;  4XR6 A;  1DBO A;  4URR A;  4YEL A;  1OGO X;  4Z05 A;  2QX3 A;  2NT6 A;  1IA5 A;  2X6X A;  4XN0 A;  4YZX A;  1JRG A;  3GRH A;  2X3H A;  4OZY A;  3VMW A;  2X85 A;  4XMY A;  1BHE A; 
#chains in the Genus database with same CATH topology
 1HG8 A;  3JX8 A;  1OFM A;  2QY1 A;  1K8F A;  3B90 A;  1KCD A;  2VBK A;  1PLU A;  3P4G A;  4XOP A;  1LM1 A;  2O17 A;  3NB2 A;  2X6Y A;  4OJ6 A;  2NTB A;  2F3L A;  1PXZ A;  4OJL A;  4W8R A;  2BM7 A;  3GQ9 A;  4XM3 A;  4YFO A;  2Z8G A;  4JRA C;  1OOC A;  4W8Q A;  3GQ8 A;  2VFN A;  4XLA A;  1DAB A;  3NAW A;  4OPW A;  2BSP A;  2BM5 A;  4OJO A;  1O8H A;  3N90 A;  1O8M A;  4Z06 A;  1KTW A;  1RWR A;  4XKV A;  5C1E A;  5AMV A;  1WMR A;  2O04 A;  4YEJ A;  1L1I A;  2XT2 A;  3B8Y A;  3KRG A;  3LYC A;  3ZSC A;  1IDJ A;  2O6W A;  3SUC A;  4MR0 A;  3TH0 A;  2NTQ A;  4NK6 A;  3JUR A;  1EE6 A;  3SZE A;  1AIR A;  2VFM A;  2XTW A;  3VST A;  2J8K A;  4OM9 A;  2B0R A;  4YDT A;  2EWE A;  3FY3 A;  2INV A;  4YZ0 A;  4C2L A;  3GQA A;  3WWG A;  2O1D A;  2VFQ A;  4XNF A;  1O8L A;  5JMC B;  1QA2 A;  1O8J A;  2YUH A;  2XC1 A;  4XON A;  2ODL A;  1QQ1 A;  4YCQ A;  2UVE A;  2W7Z A;  4PMH A;  4EW9 A;  2VBM A;  4U49 A;  1OFL A;  2VBE A;  3PSZ A;  4XLH A;  4XKW A;  1WXR A;  1JTA A;  1TSP A;  4XQF A;  4W8T A;  1KCC A;  3ZPP A;  5JLV C;  1NHC A;  1QJV A;  2NST A;  2V5I A;  2O0V A;  2VJI A;  2PYH A;  4XN3 A;  1QCX A;  1IB4 A;  1O8G A;  1GQ8 A;  1OFD A;  3PSS A;  3AK5 A;  2XTY A;  2IQ7 A;  1RMG A;  3PET A;  4AVZ A;  4XLF A;  4I84 A;  3EQO A;  1EZG A;  3EQN A;  1LLW A;  3LMW A;  2G0Y A;  1CZF A;  4NK8 A;  2X6W A;  4XL9 A;  1TYX A;  2NT9 A;  3BH7 B;  1HF2 A;  1K5C A;  3SY2 A;  2J8I A;  1X0C A;  1OGM X;  1VBL A;  1O8F A;  1XG2 A;  3GQ7 A;  4XOT A;  1BN8 A;  1DBG A;  4YZQ A;  4Z03 A;  4W8S A;  2PYG A;  4OJP A;  3H09 A;  3T9G A;  4XLE A;  3RIQ A;  5DNS A;  1OFE A;  2VFP A;  1KQ5 A;  4MXN A;  1H80 A;  3VSU A;  3ML3 A;  1O8D A;  2BM4 A;  2QYU A;  1IDK A;  1PE9 A;  2VFO A;  1TYW A;  3UW0 A;  2UVF A;  3LJY A;  4YZA A;  1RU4 A;  2PEC A;  2XTX A;  2INU A;  4OJ5 A;  3VMV A;  2BM6 A;  4XLC A;  1EA0 A;  4OZZ A;  1K4Z A;  1TYV A;  2VJJ A;  4XOR A;  1CLW A;  4U4B A;  3B4N A;  5C1C A;  1O8I A;  1O8K A;  1TYU A;  2QZA A;  4YC5 A;  2NZM A;  1O88 A;  1QRB A;  3DU1 X;  4HWV A;  3VSV A;  2O0W A;  2IOU G;  2NTP A;  3BH6 B;  1QA1 A;  2NSP A;  1O8E A;  2QXZ A;  4XR6 A;  1DBO A;  4V02 C;  3SYJ A;  1QA3 A;  3N6Z A;  4URR A;  4YEL A;  2BX6 A;  1OGO X;  4Z05 A;  1QRC A;  2QX3 A;  2NT6 A;  3SQV A;  4YEI A;  2X6X A;  4XN0 A;  4YZX A;  1IA5 A;  1JRG A;  3GRH A;  2X3H A;  4OZY A;  3VMW A;  2XT4 A;  4KH3 A;  2X85 A;  4XMY A;  1BHE A;  1LLZ A; 
#chains in the Genus database with same CATH homology
 1HG8 A;  1OFM A;  2QY1 A;  1KCD A;  3B90 A;  2VBK A;  1PLU A;  4XOP A;  2O17 A;  2X6Y A;  4OJ6 A;  2NTB A;  1PXZ A;  4OJL A;  4W8R A;  3GQ9 A;  1IB4 A;  4XM3 A;  2Z8G A;  1OOC A;  4W8Q A;  3GQ8 A;  4XLA A;  2BSP A;  4OJO A;  1O8H A;  1O8M A;  4Z06 A;  1KTW A;  1RWR A;  4XKV A;  5C1E A;  5AMV A;  1WMR A;  2O04 A;  4YEJ A;  3B8Y A;  3KRG A;  3ZSC A;  1IDJ A;  3SUC A;  4MR0 A;  2NTQ A;  4NK6 A;  3JUR A;  1EE6 A;  1AIR A;  3VST A;  2EWE A;  3FY3 A;  2INV A;  4YZ0 A;  4C2L A;  3GQA A;  3WWG A;  2O1D A;  4XNF A;  1O8L A;  1O8J A;  4XON A;  2ODL A;  2UVE A;  4PMH A;  4EW9 A;  2VBM A;  4U49 A;  1OFL A;  2VBE A;  4XLH A;  4XKW A;  1JTA A;  1KCC A;  4XQF A;  4W8T A;  3ZPP A;  1NHC A;  1QJV A;  2NST A;  4XN3 A;  2O0V A;  2VJI A;  2PYH A;  1QCX A;  1O8G A;  1GQ8 A;  2IQ7 A;  1RMG A;  4AVZ A;  4XLF A;  4I84 A;  3EQO A;  3EQN A;  3LMW A;  1CZF A;  4NK8 A;  2X6W A;  4XL9 A;  2NT9 A;  1K5C A;  1X0C A;  1OGM X;  1VBL A;  1O8F A;  1XG2 A;  3GQ7 A;  4XOT A;  1BN8 A;  1DBG A;  4YZQ A;  4Z03 A;  4W8S A;  2PYG A;  4OJP A;  3T9G A;  4XLE A;  4MXN A;  1H80 A;  3VSU A;  1O8D A;  1IDK A;  1PE9 A;  3UW0 A;  2UVF A;  4YZA A;  1RU4 A;  2PEC A;  4OJ5 A;  2INU A;  3VMV A;  4XLC A;  4OZZ A;  2VJJ A;  4XOR A;  4U4B A;  3B4N A;  5C1C A;  1O8I A;  1O8K A;  2NZM A;  1O88 A;  3VSV A;  4HWV A;  2O0W A;  2NTP A;  2NSP A;  1O8E A;  2QXZ A;  4XR6 A;  1DBO A;  4URR A;  4YEL A;  1OGO X;  4Z05 A;  2QX3 A;  2NT6 A;  1IA5 A;  2X6X A;  4XN0 A;  4YZX A;  1JRG A;  3GRH A;  2X3H A;  4OZY A;  3VMW A;  2X85 A;  4XMY A;  1BHE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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