2XTWA

Structure of qnrb1 (full length), a plasmid-mediated fluoroquinolone resistance protein
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
213
structure length
213
Chain Sequence
GSHMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
source organism Klebsiella pneumoniae
publication title Structure of Qnrb1, a Plasmid-Mediated Fluoroquinolone Resistance Factor.
pubmed doi rcsb
molecule keywords QNRB1
total genus 79
structure length 213
sequence length 213
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2xtwA00
4YFOA 3PSSA 3SY2A 3SQVA 2XT2A 5DNSA 3NAWA 3NB2A 2XTXA 2XTWA 3DU1X 2J8KA 2O6WA 2QYUA 4YC5A 4YEIA 2XT4A 2XTYA 4YDTA 3PSZA 4YCQA 2QZAA
chains in the Genus database with same CATH superfamily
3SY2A 1OGOX 2UVEA 4I84A 1RU4A 3EQOA 4W8QA 1CZFA 1O88A 4C2LA 1IA5A 4XN3A 1OFMA 3VMWA 4XLHA 1LM1A 1WMRA 3JX8A 3SZEA 2BSPA 1DBOA 1LLZA 4XM3A 3VMVA 2QX3A 1QCXA 1QJVA 3GQ8A 4XOTA 3SYJA 3BH6B 4Z03A 4KH3A 4NK6A 1JTAA 1O8HA 1O8GA 2EWEA 4OM9A 1RMGA 1O8EA 4OJPA 2W7ZA 1K4ZA 4YZQA 1IDJA 4NK8A 3WWGA 1K8FA 2B0RA 2BM5A 2O17A 4YCQA 4YZXA 2NTPA 2O0WA 1QA1A 1O8IA 2VBEA 3AK5A 4XNFA 3H09A 3RIQA 3ZPPA 3LYCA 1VBLA 1GQ8A 1TYWA 2VFQA 4V02C 4OJ6A 3B4NA 4XLAA 4Z05A 1K5CA 4XN0A 1HF2A 2BM4A 3GRHA 3VSUA 1QRCA 3DU1X 3TH0A 2PYGA 2QYUA 1EE6A 4XLEA 1OFLA 1TYVA 1X0CA 2O0VA 1OFDA 1OGMX 2VFOA 3JURA 3KRGA 4XKWA 5C1EA 1L1IA 2ODLA 2XT4A 2NTBA 2Z8GA 3UW0A 1OFEA 2VFPA 1O8LA 4OJ5A 3GQAA 1KCDA 1QA3A 1PE9A 2X6YA 1IDKA 2YUHA 2QZAA 4YFOA 4YZ0A 1O8DA 3PSSA 1KTWA 3SQVA 2INVA 2XT2A 4OZYA 5DNSA 3ZSCA 4JRAC 4YZAA 4W8RA 3B90A 2INUA 2XTXA 1BN8A 1QRBA 1TSPA 2XTWA 5JMCB 2VFNA 3GQ7A 4AVZA 3P4GA 1RWRA 2X6WA 4OJOA 2XC1A 1JRGA 2NSPA 1CLWA 4MR0A 4U4BA 1IB4A 4URRA 4OJLA 1PLUA 2BM7A 3EQNA 4PMHA 4XL9A 1KCCA 5C1CA 1DABA 4YELA 2VFMA 4EW9A 2IQ7A 3VSVA 3VSTA 2X85A 1QQ1A 1O8MA 2F3LA 4W8SA 4XOPA 4YEIA 2PECA 4XR6A 1H80A 1KQ5A 1OOCA 4MXNA 4XMYA 5JLVC 1NHCA 4W8TA 1PXZA 4XKVA 2NTQA 4HWVA 4XQFA 3T9GA 2BX6A 3ML3A 4Z06A 3BH7B 2QY1A 1EZGA 2O04A 2G0YA 2VJIA 3N6ZA 1HG8A 3B8YA 1BHEA 4OPWA 4U49A 3NAWA 1O8KA 1LLWA 3NB2A 4XORA 1TYUA 4YEJA 2IOUG 2X3HA 3LMWA 4OZZA 3N90A 2NZMA 1XG2A 2NSTA 2O1DA 2UVFA 2BM6A 2J8KA 2O6WA 3FY3A 4YC5A 2VJJA 1WXRA 2NT9A 1AIRA 4XLCA 2PYHA 3LJYA 2VBKA 4XLFA 1QA2A 2J8IA 2XTYA 2VBMA 3PETA 1O8FA 4YDTA 1TYXA 1DBGA 2V5IA 3GQ9A 1O8JA 2NT6A 2QXZA 3PSZA 5AMVA 1EA0A 3SUCA 2X6XA 4XONA
chains in the Genus database with same CATH topology
4YFOA 3PSSA 3SY2A 3SQVA 2XT2A 5DNSA 3NAWA 3NB2A 2XTXA 2XTWA 3DU1X 2J8KA 2O6WA 2QYUA 4YC5A 4YEIA 2XT4A 2XTYA 4YDTA 3PSZA 4YCQA 2QZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YFO A;  3PSS A;  3SY2 A;  3SQV A;  2XT2 A;  5DNS A;  3NAW A;  3NB2 A;  2XTX A;  2XTW A;  3DU1 X;  2J8K A;  2O6W A;  2QYU A;  4YC5 A;  4YEI A;  2XT4 A;  2XTY A;  4YDT A;  3PSZ A;  4YCQ A;  2QZA A; 
#chains in the Genus database with same CATH topology
 3SY2 A;  1OGO X;  2UVE A;  4I84 A;  1RU4 A;  3EQO A;  4W8Q A;  1CZF A;  1O88 A;  4C2L A;  1IA5 A;  4XN3 A;  1OFM A;  3VMW A;  4XLH A;  1LM1 A;  1WMR A;  3JX8 A;  3SZE A;  2BSP A;  1DBO A;  1LLZ A;  4XM3 A;  3VMV A;  2QX3 A;  1QCX A;  1QJV A;  3GQ8 A;  4XOT A;  3SYJ A;  3BH6 B;  4Z03 A;  4KH3 A;  4NK6 A;  1JTA A;  1O8H A;  1O8G A;  2EWE A;  4OM9 A;  1RMG A;  1O8E A;  4OJP A;  2W7Z A;  1K4Z A;  4YZQ A;  1IDJ A;  4NK8 A;  3WWG A;  1K8F A;  2B0R A;  2BM5 A;  2O17 A;  4YCQ A;  4YZX A;  2NTP A;  2O0W A;  1QA1 A;  1O8I A;  2VBE A;  3AK5 A;  4XNF A;  3H09 A;  3RIQ A;  3ZPP A;  3LYC A;  1VBL A;  1GQ8 A;  1TYW A;  2VFQ A;  4V02 C;  4OJ6 A;  3B4N A;  4XLA A;  4Z05 A;  1K5C A;  4XN0 A;  1HF2 A;  2BM4 A;  3GRH A;  3VSU A;  1QRC A;  3DU1 X;  3TH0 A;  2PYG A;  2QYU A;  1EE6 A;  4XLE A;  1OFL A;  1TYV A;  1X0C A;  2O0V A;  1OFD A;  1OGM X;  2VFO A;  3JUR A;  3KRG A;  4XKW A;  5C1E A;  1L1I A;  2ODL A;  2XT4 A;  2NTB A;  2Z8G A;  3UW0 A;  1OFE A;  2VFP A;  1O8L A;  4OJ5 A;  3GQA A;  1KCD A;  1QA3 A;  1PE9 A;  2X6Y A;  1IDK A;  2YUH A;  2QZA A;  4YFO A;  4YZ0 A;  1O8D A;  3PSS A;  1KTW A;  3SQV A;  2INV A;  2XT2 A;  4OZY A;  5DNS A;  3ZSC A;  4JRA C;  4YZA A;  4W8R A;  3B90 A;  2INU A;  2XTX A;  1BN8 A;  1QRB A;  1TSP A;  2XTW A;  5JMC B;  2VFN A;  3GQ7 A;  4AVZ A;  3P4G A;  1RWR A;  2X6W A;  4OJO A;  2XC1 A;  1JRG A;  2NSP A;  1CLW A;  4MR0 A;  4U4B A;  1IB4 A;  4URR A;  4OJL A;  1PLU A;  2BM7 A;  3EQN A;  4PMH A;  4XL9 A;  1KCC A;  5C1C A;  1DAB A;  4YEL A;  2VFM A;  4EW9 A;  2IQ7 A;  3VSV A;  3VST A;  2X85 A;  1QQ1 A;  1O8M A;  2F3L A;  4W8S A;  4XOP A;  4YEI A;  2PEC A;  4XR6 A;  1H80 A;  1KQ5 A;  1OOC A;  4MXN A;  4XMY A;  5JLV C;  1NHC A;  4W8T A;  1PXZ A;  4XKV A;  2NTQ A;  4HWV A;  4XQF A;  3T9G A;  2BX6 A;  3ML3 A;  4Z06 A;  3BH7 B;  2QY1 A;  1EZG A;  2O04 A;  2G0Y A;  2VJI A;  3N6Z A;  1HG8 A;  3B8Y A;  1BHE A;  4OPW A;  4U49 A;  3NAW A;  1O8K A;  1LLW A;  3NB2 A;  4XOR A;  1TYU A;  4YEJ A;  2IOU G;  2X3H A;  3LMW A;  4OZZ A;  3N90 A;  2NZM A;  1XG2 A;  2NST A;  2O1D A;  2UVF A;  2BM6 A;  2J8K A;  2O6W A;  3FY3 A;  4YC5 A;  2VJJ A;  1WXR A;  2NT9 A;  1AIR A;  4XLC A;  2PYH A;  3LJY A;  2VBK A;  4XLF A;  1QA2 A;  2J8I A;  2XTY A;  2VBM A;  3PET A;  1O8F A;  4YDT A;  1TYX A;  1DBG A;  2V5I A;  3GQ9 A;  1O8J A;  2NT6 A;  2QXZ A;  3PSZ A;  5AMV A;  1EA0 A;  3SUC A;  2X6X A;  4XON A; 
#chains in the Genus database with same CATH homology
 4YFO A;  3PSS A;  3SY2 A;  3SQV A;  2XT2 A;  5DNS A;  3NAW A;  3NB2 A;  2XTX A;  2XTW A;  3DU1 X;  2J8K A;  2O6W A;  2QYU A;  4YC5 A;  4YEI A;  2XT4 A;  2XTY A;  4YDT A;  3PSZ A;  4YCQ A;  2QZA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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