2XTWA

Structure of qnrb1 (full length), a plasmid-mediated fluoroquinolone resistance protein
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
213
structure length
213
Chain Sequence
GSHMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords QNRB1
publication title Structure of Qnrb1, a Plasmid-Mediated Fluoroquinolone Resistance Factor.
pubmed doi rcsb
source organism Klebsiella pneumoniae
molecule tags Cell cycle
total genus 79
structure length 213
sequence length 213
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2xtwA00
4YDTA 3PSZA 2QYUA 3NAWA 2XTYA 2O6WA 4YFOA 4YC5A 2XTXA 2XTWA 4YEIA 2QZAA 3SQVA 3DU1X 2J8KA 3NB2A 4YCQA 5DNSA 3SY2A 2XT2A 3PSSA 2XT4A
chains in the Genus database with same CATH superfamily
1LLZA 1QRCA 4YDTA 2W7ZA 3SUCA 1RWRA 4AVZA 3N90A 4NK6A 2O6WA 2NTPA 4PMHA 4XOPA 1PLUA 2VFNA 4OJLA 4XQFA 2G0YA 2YUHA 3GQ7A 4NK8A 1IB4A 4YFOA 4OM9A 4YC5A 1LM1A 4XLHA 3SYJA 3VSTA 2IOUG 2NSTA 1OFDA 1RU4A 1HF2A 4OJ6A 3ZPPA 2UVEA 1O8DA 1TYUA 1XG2A 1O8HA 1OGMX 2F3LA 2NSPA 2VBKA 2X6YA 2VFOA 4OZYA 4URRA 1O8FA 4XL9A 1K4ZA 4YEJA 2NTBA 3GQAA 1O8GA 3B4NA 1EE6A 2O1DA 3AK5A 1OFLA 1BN8A 3LJYA 4I84A 1KTWA 2VBEA 4XONA 4YZAA 2BM4A 1AIRA 4XKVA 1QCXA 2XTYA 1BHEA 4Z03A 1RMGA 4OPWA 1KCCA 2O04A 3RIQA 3ZSCA 4EW9A 2BM5A 2XTXA 4C2LA 1GQ8A 1IDKA 3B8YA 1JRGA 3H09A 4YEIA 3VMWA 1WXRA 5JLVC 2X3HA 1CZFA 2EWEA 4OJPA 3EQNA 4OJ5A 4XLCA 2UVFA 2X6WA 3ML3A 1H80A 1QRBA 4HWVA 5C1EA 3VSVA 1IDJA 2BX6A 2BM6A 2PYHA 1VBLA 4U49A 2QY1A 4XNFA 1QA2A 3JURA 5JMCB 2J8KA 1EA0A 1K8FA 2NZMA 2BM7A 2VJJA 2X85A 3PETA 4YCQA 4Z06A 1DABA 3P4GA 5DNSA 4XOTA 1PXZA 2J8IA 3VMVA 3UW0A 1NHCA 1O8EA 1JTAA 4W8TA 4YZXA 4OJOA 1O8KA 1OFMA 3BH7B 2XC1A 1QA3A 1O88A 4XMYA 1CLWA 1LLWA 2V5IA 3GRHA 4YZ0A 2NTQA 3N6ZA 4XKWA 1HG8A 2QXZA 4XLAA 4XM3A 3BH6B 2ODLA 1O8JA 2XTWA 2Z8GA 3EQOA 1TYVA 1O8MA 4XN0A 4YELA 3T9GA 3GQ9A 2BSPA 4XN3A 1IA5A 3FY3A 3DU1X 2VFPA 1WMRA 1EZGA 2O0VA 2NT9A 4MXNA 1DBGA 4W8RA 1OFEA 1DBOA 3B90A 2INVA 3GQ8A 3KRGA 2X6XA 4V02C 4KH3A 4W8QA 4XLFA 2VFMA 4MR0A 1K5CA 3PSSA 1QA1A 4XORA 1KCDA 3PSZA 1X0CA 2PECA 2QYUA 4YZQA 1TYWA 3NAWA 1TSPA 2IQ7A 3LYCA 2NT6A 1KQ5A 1PE9A 4U4BA 2O0WA 1L1IA 1OGOX 1OOCA 1O8LA 2O17A 3JX8A 4XR6A 4OZZA 2QZAA 2PYGA 3SQVA 3VSUA 2VFQA 1TYXA 1QJVA 3TH0A 3WWGA 4W8SA 2QX3A 2INUA 5AMVA 1O8IA 3SZEA 5C1CA 2VJIA 3NB2A 3LMWA 4JRAC 4Z05A 4XLEA 3SY2A 1QQ1A 2XT2A 2VBMA 2XT4A 2B0RA
chains in the Genus database with same CATH topology
4YDTA 3PSZA 2QYUA 3NAWA 2XTYA 2O6WA 4YFOA 4YC5A 2XTXA 2XTWA 4YEIA 2QZAA 3SQVA 3DU1X 2J8KA 3NB2A 4YCQA 5DNSA 3SY2A 2XT2A 3PSSA 2XT4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YDT A;  3PSZ A;  2QYU A;  3NAW A;  2XTY A;  2O6W A;  4YFO A;  4YC5 A;  2XTX A;  2XTW A;  4YEI A;  2QZA A;  3SQV A;  3DU1 X;  2J8K A;  3NB2 A;  4YCQ A;  5DNS A;  3SY2 A;  2XT2 A;  3PSS A;  2XT4 A; 
#chains in the Genus database with same CATH topology
 1LLZ A;  1QRC A;  4YDT A;  2W7Z A;  3SUC A;  1RWR A;  4AVZ A;  3N90 A;  4NK6 A;  2O6W A;  2NTP A;  4PMH A;  4XOP A;  1PLU A;  2VFN A;  4OJL A;  4XQF A;  2G0Y A;  2YUH A;  3GQ7 A;  4NK8 A;  1IB4 A;  4YFO A;  4OM9 A;  4YC5 A;  1LM1 A;  4XLH A;  3SYJ A;  3VST A;  2IOU G;  2NST A;  1OFD A;  1RU4 A;  1HF2 A;  4OJ6 A;  3ZPP A;  2UVE A;  1O8D A;  1TYU A;  1XG2 A;  1O8H A;  1OGM X;  2F3L A;  2NSP A;  2VBK A;  2X6Y A;  2VFO A;  4OZY A;  4URR A;  1O8F A;  4XL9 A;  1K4Z A;  4YEJ A;  2NTB A;  3GQA A;  1O8G A;  3B4N A;  1EE6 A;  2O1D A;  3AK5 A;  1OFL A;  1BN8 A;  3LJY A;  4I84 A;  1KTW A;  2VBE A;  4XON A;  4YZA A;  2BM4 A;  1AIR A;  4XKV A;  1QCX A;  2XTY A;  1BHE A;  4Z03 A;  1RMG A;  4OPW A;  1KCC A;  2O04 A;  3RIQ A;  3ZSC A;  4EW9 A;  2BM5 A;  2XTX A;  4C2L A;  1GQ8 A;  1IDK A;  3B8Y A;  1JRG A;  3H09 A;  4YEI A;  3VMW A;  1WXR A;  5JLV C;  2X3H A;  1CZF A;  2EWE A;  4OJP A;  3EQN A;  4OJ5 A;  4XLC A;  2UVF A;  2X6W A;  3ML3 A;  1H80 A;  1QRB A;  4HWV A;  5C1E A;  3VSV A;  1IDJ A;  2BX6 A;  2BM6 A;  2PYH A;  1VBL A;  4U49 A;  2QY1 A;  4XNF A;  1QA2 A;  3JUR A;  5JMC B;  2J8K A;  1EA0 A;  1K8F A;  2NZM A;  2BM7 A;  2VJJ A;  2X85 A;  3PET A;  4YCQ A;  4Z06 A;  1DAB A;  3P4G A;  5DNS A;  4XOT A;  1PXZ A;  2J8I A;  3VMV A;  3UW0 A;  1NHC A;  1O8E A;  1JTA A;  4W8T A;  4YZX A;  4OJO A;  1O8K A;  1OFM A;  3BH7 B;  2XC1 A;  1QA3 A;  1O88 A;  4XMY A;  1CLW A;  1LLW A;  2V5I A;  3GRH A;  4YZ0 A;  2NTQ A;  3N6Z A;  4XKW A;  1HG8 A;  2QXZ A;  4XLA A;  4XM3 A;  3BH6 B;  2ODL A;  1O8J A;  2XTW A;  2Z8G A;  3EQO A;  1TYV A;  1O8M A;  4XN0 A;  4YEL A;  3T9G A;  3GQ9 A;  2BSP A;  4XN3 A;  1IA5 A;  3FY3 A;  3DU1 X;  2VFP A;  1WMR A;  1EZG A;  2O0V A;  2NT9 A;  4MXN A;  1DBG A;  4W8R A;  1OFE A;  1DBO A;  3B90 A;  2INV A;  3GQ8 A;  3KRG A;  2X6X A;  4V02 C;  4KH3 A;  4W8Q A;  4XLF A;  2VFM A;  4MR0 A;  1K5C A;  3PSS A;  1QA1 A;  4XOR A;  1KCD A;  3PSZ A;  1X0C A;  2PEC A;  2QYU A;  4YZQ A;  1TYW A;  3NAW A;  1TSP A;  2IQ7 A;  3LYC A;  2NT6 A;  1KQ5 A;  1PE9 A;  4U4B A;  2O0W A;  1L1I A;  1OGO X;  1OOC A;  1O8L A;  2O17 A;  3JX8 A;  4XR6 A;  4OZZ A;  2QZA A;  2PYG A;  3SQV A;  3VSU A;  2VFQ A;  1TYX A;  1QJV A;  3TH0 A;  3WWG A;  4W8S A;  2QX3 A;  2INU A;  5AMV A;  1O8I A;  3SZE A;  5C1C A;  2VJI A;  3NB2 A;  3LMW A;  4JRA C;  4Z05 A;  4XLE A;  3SY2 A;  1QQ1 A;  2XT2 A;  2VBM A;  2XT4 A;  2B0R A; 
#chains in the Genus database with same CATH homology
 4YDT A;  3PSZ A;  2QYU A;  3NAW A;  2XTY A;  2O6W A;  4YFO A;  4YC5 A;  2XTX A;  2XTW A;  4YEI A;  2QZA A;  3SQV A;  3DU1 X;  2J8K A;  3NB2 A;  4YCQ A;  5DNS A;  3SY2 A;  2XT2 A;  3PSS A;  2XT4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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